Query 001305
Match_columns 1104
No_of_seqs 359 out of 2171
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0242 Kinesin-like protein [ 100.0 3.9E-84 8.6E-89 776.0 34.4 396 19-426 3-408 (675)
2 KOG0243 Kinesin-like protein [ 100.0 6.3E-84 1.4E-88 777.6 35.5 358 19-381 46-426 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 1.7E-83 3.7E-88 760.2 32.9 353 22-379 4-381 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 1.2E-83 2.6E-88 749.1 30.0 358 20-380 3-370 (574)
5 PF11995 DUF3490: Domain of un 100.0 7.8E-84 1.7E-88 637.2 10.8 152 931-1082 1-161 (161)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 6.2E-78 1.3E-82 686.2 32.4 337 20-366 5-352 (607)
7 PLN03188 kinesin-12 family pro 100.0 1.8E-77 3.9E-82 726.9 36.1 342 20-374 96-468 (1320)
8 cd01370 KISc_KIP3_like Kinesin 100.0 6.2E-76 1.4E-80 660.3 35.1 321 23-345 1-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 1.1E-75 2.4E-80 658.0 34.2 315 22-345 1-337 (337)
10 cd01368 KISc_KIF23_like Kinesi 100.0 2.7E-74 5.9E-79 648.7 33.6 317 22-343 1-345 (345)
11 KOG0241 Kinesin-like protein [ 100.0 4.4E-74 9.6E-79 667.4 33.2 379 21-401 3-406 (1714)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.5E-73 1.4E-77 639.5 35.0 329 22-352 1-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 5.7E-72 1.2E-76 626.8 34.7 322 22-345 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 7.9E-72 1.7E-76 623.2 32.5 311 22-343 1-322 (322)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.6E-71 3.4E-76 627.0 34.7 327 22-353 2-351 (352)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 3.6E-71 7.7E-76 617.0 35.3 314 23-345 1-321 (321)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 9.1E-71 2E-75 614.4 34.1 314 22-345 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 3.2E-70 7E-75 609.3 33.7 308 23-343 1-319 (319)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 3.7E-70 7.9E-75 612.9 33.7 316 23-346 2-341 (341)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.4E-69 5.2E-74 606.0 33.7 312 23-343 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 6.9E-68 1.5E-72 591.9 34.3 315 22-348 2-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 2.8E-67 6.1E-72 587.6 34.0 325 23-352 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 2.7E-66 5.8E-71 577.4 34.2 317 23-343 1-328 (328)
24 KOG0239 Kinesin (KAR3 subfamil 100.0 1.7E-67 3.6E-72 630.9 22.7 323 21-351 313-646 (670)
25 PF00225 Kinesin: Kinesin moto 100.0 2.9E-66 6.2E-71 578.7 22.8 316 29-345 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 5.4E-65 1.2E-69 578.2 27.1 323 18-350 204-546 (676)
27 KOG0247 Kinesin-like protein [ 100.0 1.7E-61 3.6E-66 562.4 31.8 327 20-352 29-443 (809)
28 KOG0244 Kinesin-like protein [ 100.0 1.5E-62 3.3E-67 585.1 13.8 336 30-379 1-350 (913)
29 COG5059 KIP1 Kinesin-like prot 100.0 7.8E-57 1.7E-61 534.8 28.6 282 67-353 55-344 (568)
30 cd01363 Motor_domain Myosin an 100.0 8.8E-46 1.9E-50 383.8 16.9 173 85-324 8-186 (186)
31 COG5059 KIP1 Kinesin-like prot 97.6 4.3E-07 9.3E-12 110.2 -12.5 253 19-288 302-566 (568)
32 COG0556 UvrB Helicase subunit 94.6 0.033 7.1E-07 66.9 4.4 84 69-157 4-101 (663)
33 PF00308 Bac_DnaA: Bacterial d 92.0 0.076 1.6E-06 57.6 1.8 52 68-122 3-54 (219)
34 PRK06893 DNA replication initi 91.9 0.12 2.6E-06 56.2 3.1 52 67-124 10-61 (229)
35 COG2805 PilT Tfp pilus assembl 88.6 0.18 4E-06 57.5 1.1 34 89-122 112-145 (353)
36 PRK06620 hypothetical protein; 87.5 0.36 7.7E-06 52.4 2.4 50 67-120 10-62 (214)
37 PRK14086 dnaA chromosomal repl 86.9 0.42 9.2E-06 59.4 2.9 54 67-123 282-335 (617)
38 PRK08084 DNA replication initi 86.3 0.53 1.1E-05 51.5 3.0 51 67-123 16-66 (235)
39 PRK12377 putative replication 85.6 0.56 1.2E-05 52.2 2.8 55 69-125 70-124 (248)
40 PRK06526 transposase; Provisio 85.6 0.4 8.6E-06 53.5 1.6 48 72-124 73-120 (254)
41 PRK09087 hypothetical protein; 84.8 0.54 1.2E-05 51.4 2.1 48 67-120 15-62 (226)
42 PRK05642 DNA replication initi 84.1 0.79 1.7E-05 50.2 3.1 49 67-122 13-65 (234)
43 PRK14088 dnaA chromosomal repl 84.1 0.64 1.4E-05 55.7 2.5 52 67-122 99-150 (440)
44 PRK08727 hypothetical protein; 83.9 0.68 1.5E-05 50.6 2.4 49 67-123 13-62 (233)
45 PRK08116 hypothetical protein; 83.5 0.66 1.4E-05 52.0 2.2 52 69-122 81-134 (268)
46 COG1474 CDC6 Cdc6-related prot 83.3 1.7 3.8E-05 51.0 5.6 58 86-151 26-83 (366)
47 PRK10884 SH3 domain-containing 83.1 5.7 0.00012 43.4 9.0 73 355-427 89-164 (206)
48 TIGR00362 DnaA chromosomal rep 82.7 0.77 1.7E-05 54.0 2.4 54 66-122 103-156 (405)
49 PRK07952 DNA replication prote 82.1 0.96 2.1E-05 50.3 2.7 54 69-124 68-121 (244)
50 TIGR03420 DnaA_homol_Hda DnaA 81.8 1.2 2.6E-05 47.3 3.3 50 67-122 9-58 (226)
51 PF04851 ResIII: Type III rest 81.7 0.63 1.4E-05 46.9 1.1 30 93-122 15-45 (184)
52 TIGR02928 orc1/cdc6 family rep 81.6 1.4 2.9E-05 50.6 3.8 46 69-119 11-57 (365)
53 PRK00411 cdc6 cell division co 81.5 1.4 2.9E-05 51.2 3.8 38 82-119 35-72 (394)
54 PRK00149 dnaA chromosomal repl 81.3 0.93 2E-05 54.2 2.4 54 66-122 115-168 (450)
55 PRK14087 dnaA chromosomal repl 80.1 1.1 2.3E-05 54.0 2.5 51 69-122 111-161 (450)
56 PRK08181 transposase; Validate 79.5 1.4 3.1E-05 49.6 3.0 26 99-126 105-130 (269)
57 PRK08939 primosomal protein Dn 79.0 1 2.2E-05 51.6 1.7 55 70-125 124-179 (306)
58 cd00009 AAA The AAA+ (ATPases 78.6 1.4 3.1E-05 41.7 2.4 27 93-119 10-36 (151)
59 COG2804 PulE Type II secretory 78.4 0.96 2.1E-05 54.8 1.3 31 91-121 247-277 (500)
60 COG0593 DnaA ATPase involved i 78.1 1.5 3.2E-05 52.3 2.7 51 67-120 81-131 (408)
61 PRK06835 DNA replication prote 75.8 1.4 3E-05 51.1 1.6 36 90-126 172-207 (329)
62 PRK08903 DnaA regulatory inact 75.5 2.5 5.4E-05 45.5 3.4 51 67-122 12-62 (227)
63 TIGR00631 uvrb excinuclease AB 74.3 2.8 6E-05 52.9 3.8 81 72-157 4-98 (655)
64 cd00046 DEXDc DEAD-like helica 73.9 1 2.2E-05 42.2 -0.0 18 105-122 3-20 (144)
65 KOG0239 Kinesin (KAR3 subfamil 73.1 1.4 3E-05 55.6 0.8 46 113-164 62-113 (670)
66 PTZ00112 origin recognition co 71.4 5.7 0.00012 51.6 5.5 23 99-121 778-800 (1164)
67 smart00053 DYNc Dynamin, GTPas 71.3 8.5 0.00018 42.9 6.3 54 186-257 85-138 (240)
68 PRK06921 hypothetical protein; 70.8 2.6 5.6E-05 47.3 2.2 35 90-124 102-139 (266)
69 COG1484 DnaC DNA replication p 69.3 3.3 7.1E-05 46.3 2.6 56 68-126 74-129 (254)
70 PF01935 DUF87: Domain of unkn 69.1 1.4 3.1E-05 47.3 -0.3 24 105-128 26-49 (229)
71 PTZ00454 26S protease regulato 68.7 7.9 0.00017 46.1 5.7 52 68-119 140-196 (398)
72 PF12846 AAA_10: AAA-like doma 68.4 1.6 3.4E-05 47.7 -0.2 21 102-122 1-21 (304)
73 PRK10436 hypothetical protein; 68.4 2.4 5.2E-05 51.3 1.4 29 93-121 209-237 (462)
74 TIGR02538 type_IV_pilB type IV 68.1 2.2 4.8E-05 52.8 1.0 29 93-121 307-335 (564)
75 PRK03992 proteasome-activating 68.0 5 0.00011 47.4 3.8 51 69-119 127-182 (389)
76 PF01695 IstB_IS21: IstB-like 67.7 2 4.4E-05 45.3 0.5 23 103-125 48-70 (178)
77 TIGR02533 type_II_gspE general 67.5 2.7 5.8E-05 51.3 1.5 29 93-121 233-261 (486)
78 TIGR01242 26Sp45 26S proteasom 66.8 5.7 0.00012 46.2 4.0 53 68-120 117-174 (364)
79 PF06005 DUF904: Protein of un 66.7 35 0.00076 31.6 8.2 52 361-427 20-71 (72)
80 PF13245 AAA_19: Part of AAA d 66.6 2.7 5.9E-05 38.6 1.0 28 94-122 3-30 (76)
81 TIGR03752 conj_TIGR03752 integ 66.6 35 0.00075 41.7 10.3 66 361-426 75-140 (472)
82 smart00382 AAA ATPases associa 66.4 2 4.3E-05 40.1 0.1 19 103-121 3-21 (148)
83 PF03999 MAP65_ASE1: Microtubu 65.7 2.1 4.6E-05 53.5 0.2 47 932-978 288-336 (619)
84 PRK12422 chromosomal replicati 65.7 4.1 8.8E-05 49.2 2.6 54 67-123 105-162 (445)
85 PF13401 AAA_22: AAA domain; P 65.1 1.8 3.8E-05 41.8 -0.5 18 102-119 4-21 (131)
86 cd01382 MYSc_type_VI Myosin mo 64.5 55 0.0012 42.2 12.2 37 84-120 73-109 (717)
87 KOG0989 Replication factor C, 64.3 4.9 0.00011 46.4 2.7 43 77-119 31-74 (346)
88 cd00124 MYSc Myosin motor doma 64.1 42 0.00091 42.8 11.1 35 84-119 68-103 (679)
89 PF00270 DEAD: DEAD/DEAH box h 63.9 3.1 6.7E-05 41.7 1.0 26 93-120 7-32 (169)
90 TIGR01420 pilT_fam pilus retra 63.9 3.2 7E-05 48.1 1.2 29 93-121 113-141 (343)
91 PF14282 FlxA: FlxA-like prote 63.8 48 0.001 32.6 9.1 56 357-416 17-72 (106)
92 cd01131 PilT Pilus retraction 63.6 2.4 5.3E-05 45.2 0.2 19 103-121 2-20 (198)
93 PRK09183 transposase/IS protei 63.3 3.2 7E-05 46.4 1.1 46 72-122 77-122 (259)
94 TIGR02525 plasmid_TraJ plasmid 63.1 3.7 8E-05 48.5 1.5 21 101-121 148-168 (372)
95 TIGR02524 dot_icm_DotB Dot/Icm 61.7 3.8 8.2E-05 48.1 1.3 24 98-121 130-153 (358)
96 cd01129 PulE-GspE PulE/GspE Th 61.3 4.1 8.8E-05 45.7 1.4 28 94-121 72-99 (264)
97 PLN00020 ribulose bisphosphate 61.2 15 0.00032 43.9 5.8 69 68-136 110-205 (413)
98 PF05673 DUF815: Protein of un 60.8 6.1 0.00013 44.3 2.6 126 68-222 22-155 (249)
99 PF04420 CHD5: CHD5-like prote 60.3 42 0.0009 35.3 8.5 63 359-424 40-102 (161)
100 cd01384 MYSc_type_XI Myosin mo 60.3 50 0.0011 42.2 10.7 37 84-120 70-106 (674)
101 PF00437 T2SE: Type II/IV secr 60.3 2.5 5.3E-05 46.8 -0.5 18 102-119 127-144 (270)
102 COG5008 PilU Tfp pilus assembl 60.0 5.6 0.00012 45.2 2.1 32 90-121 115-146 (375)
103 cd01378 MYSc_type_I Myosin mot 59.8 50 0.0011 42.2 10.6 36 84-119 68-103 (674)
104 PF01637 Arch_ATPase: Archaeal 59.4 3.9 8.3E-05 42.8 0.8 29 91-119 9-37 (234)
105 PF02388 FemAB: FemAB family; 59.1 57 0.0012 39.0 10.4 58 262-324 183-240 (406)
106 PF13604 AAA_30: AAA domain; P 58.5 4.5 9.8E-05 43.1 1.1 29 92-120 8-36 (196)
107 COG1222 RPT1 ATP-dependent 26S 57.8 22 0.00047 42.1 6.4 114 23-138 94-244 (406)
108 TIGR03015 pepcterm_ATPase puta 57.8 5.5 0.00012 43.5 1.7 22 98-119 39-60 (269)
109 PRK12402 replication factor C 57.1 7.1 0.00015 44.0 2.4 43 71-121 13-55 (337)
110 PF05970 PIF1: PIF1-like helic 55.8 7.4 0.00016 45.5 2.3 36 80-119 4-39 (364)
111 PF13086 AAA_11: AAA domain; P 55.4 4.3 9.3E-05 42.4 0.3 33 93-126 9-41 (236)
112 KOG0727 26S proteasome regulat 55.2 32 0.00069 39.1 6.8 115 24-138 99-248 (408)
113 PF12325 TMF_TATA_bd: TATA ele 55.0 36 0.00077 34.4 6.6 34 395-428 61-94 (120)
114 cd01380 MYSc_type_V Myosin mot 55.0 72 0.0016 40.9 10.9 37 84-120 68-104 (691)
115 PF13479 AAA_24: AAA domain 53.8 4.9 0.00011 43.4 0.4 19 102-120 3-21 (213)
116 PF00004 AAA: ATPase family as 53.6 3.9 8.4E-05 39.1 -0.4 15 105-119 1-15 (132)
117 PHA02544 44 clamp loader, smal 53.2 8.7 0.00019 43.3 2.3 23 99-121 39-62 (316)
118 TIGR03499 FlhF flagellar biosy 52.8 11 0.00023 42.7 2.9 21 104-124 196-216 (282)
119 smart00487 DEXDc DEAD-like hel 52.5 9 0.00019 38.2 2.1 27 94-121 17-43 (201)
120 TIGR02782 TrbB_P P-type conjug 52.3 6.6 0.00014 44.9 1.2 29 92-121 123-151 (299)
121 PTZ00361 26 proteosome regulat 52.2 26 0.00057 42.4 6.2 50 70-119 180-234 (438)
122 KOG2543 Origin recognition com 52.1 6.1 0.00013 46.8 0.9 36 105-153 33-68 (438)
123 PF00448 SRP54: SRP54-type pro 51.8 4.3 9.2E-05 43.6 -0.4 17 104-120 3-19 (196)
124 PRK11637 AmiB activator; Provi 51.6 1.1E+02 0.0023 36.8 11.1 14 362-375 50-63 (428)
125 PF13207 AAA_17: AAA domain; P 51.6 4.3 9.3E-05 38.8 -0.4 16 104-119 1-16 (121)
126 PF01580 FtsK_SpoIIIE: FtsK/Sp 50.9 3.5 7.5E-05 43.7 -1.2 19 104-122 40-58 (205)
127 PRK11448 hsdR type I restricti 50.7 8 0.00017 51.8 1.7 35 91-126 423-457 (1123)
128 PRK13833 conjugal transfer pro 50.3 9.8 0.00021 44.2 2.2 18 104-121 146-163 (323)
129 PRK13894 conjugal transfer ATP 49.4 8.5 0.00019 44.5 1.5 30 92-122 139-168 (319)
130 KOG0953 Mitochondrial RNA heli 49.2 17 0.00036 45.1 3.8 34 104-137 193-238 (700)
131 PF13191 AAA_16: AAA ATPase do 48.7 5.3 0.00011 40.6 -0.3 22 98-119 20-41 (185)
132 PRK12723 flagellar biosynthesi 48.2 13 0.00029 44.2 2.9 20 102-121 174-193 (388)
133 PF00580 UvrD-helicase: UvrD/R 48.0 6.3 0.00014 43.4 0.2 23 98-120 9-31 (315)
134 PF09726 Macoilin: Transmembra 47.8 90 0.002 40.2 10.1 70 359-428 418-500 (697)
135 PF06309 Torsin: Torsin; Inte 47.7 7.7 0.00017 39.5 0.7 25 104-132 54-79 (127)
136 CHL00081 chlI Mg-protoporyphyr 47.4 8.4 0.00018 45.3 1.0 46 68-121 12-57 (350)
137 TIGR01241 FtsH_fam ATP-depende 46.8 17 0.00037 44.3 3.6 52 68-120 50-106 (495)
138 cd01130 VirB11-like_ATPase Typ 46.2 11 0.00024 39.7 1.6 27 93-120 17-43 (186)
139 PF00910 RNA_helicase: RNA hel 46.1 6.4 0.00014 37.9 -0.2 26 105-134 1-26 (107)
140 PRK13764 ATPase; Provisional 46.0 7.4 0.00016 48.8 0.3 23 101-123 256-278 (602)
141 COG1201 Lhr Lhr-like helicases 45.9 24 0.00052 45.8 4.7 102 94-200 31-141 (814)
142 PF07989 Microtub_assoc: Micro 45.4 96 0.0021 28.9 7.3 67 358-424 6-72 (75)
143 PRK13342 recombination factor 45.3 9.1 0.0002 45.4 0.9 24 97-120 31-54 (413)
144 PHA00729 NTP-binding motif con 45.3 13 0.00029 41.2 2.1 36 90-125 5-40 (226)
145 PF00063 Myosin_head: Myosin h 45.0 11 0.00024 47.8 1.6 36 84-119 67-102 (689)
146 COG4962 CpaF Flp pilus assembl 44.5 10 0.00023 44.4 1.2 25 94-119 166-190 (355)
147 PF07693 KAP_NTPase: KAP famil 43.9 26 0.00055 39.5 4.2 44 100-151 18-62 (325)
148 TIGR00635 ruvB Holliday juncti 43.9 15 0.00033 41.1 2.4 38 82-120 9-48 (305)
149 PRK13900 type IV secretion sys 43.4 14 0.00031 42.9 2.1 28 92-120 151-178 (332)
150 PF06048 DUF927: Domain of unk 43.4 16 0.00035 41.3 2.5 33 86-119 178-210 (286)
151 COG3074 Uncharacterized protei 42.8 1.4E+02 0.003 27.8 7.7 58 360-425 19-76 (79)
152 COG4096 HsdR Type I site-speci 42.6 18 0.00039 46.6 2.9 41 85-126 168-209 (875)
153 cd00268 DEADc DEAD-box helicas 42.2 15 0.00033 38.3 1.9 23 94-118 30-52 (203)
154 COG3883 Uncharacterized protei 42.1 1.5E+02 0.0033 33.9 9.7 63 359-422 38-100 (265)
155 PF10458 Val_tRNA-synt_C: Valy 42.1 97 0.0021 27.8 6.7 24 358-381 3-26 (66)
156 COG1223 Predicted ATPase (AAA+ 42.1 18 0.00038 41.3 2.5 17 103-119 152-168 (368)
157 PF02562 PhoH: PhoH-like prote 42.1 15 0.00033 40.1 1.9 19 101-119 18-36 (205)
158 PRK06547 hypothetical protein; 42.0 16 0.00034 38.6 2.0 28 92-119 5-32 (172)
159 PRK11776 ATP-dependent RNA hel 41.9 14 0.0003 44.2 1.8 23 94-118 35-57 (460)
160 PF13238 AAA_18: AAA domain; P 41.9 7.4 0.00016 37.0 -0.4 21 105-125 1-21 (129)
161 COG2433 Uncharacterized conser 41.3 1.1E+02 0.0024 38.6 9.0 34 395-428 474-507 (652)
162 COG1419 FlhF Flagellar GTP-bin 41.2 18 0.00039 43.3 2.5 38 83-120 180-221 (407)
163 PRK13851 type IV secretion sys 41.2 9.3 0.0002 44.7 0.2 18 103-120 163-180 (344)
164 PTZ00424 helicase 45; Provisio 41.0 14 0.0003 42.9 1.6 26 92-119 57-82 (401)
165 PF13671 AAA_33: AAA domain; P 40.3 9.4 0.0002 37.4 0.0 15 105-119 2-16 (143)
166 PLN03025 replication factor C 40.1 19 0.00042 41.1 2.5 24 99-122 31-54 (319)
167 TIGR00348 hsdR type I site-spe 39.7 18 0.00039 45.9 2.4 37 89-126 246-287 (667)
168 KOG0739 AAA+-type ATPase [Post 39.7 25 0.00054 40.9 3.1 68 71-138 131-225 (439)
169 PF07728 AAA_5: AAA domain (dy 39.6 8.5 0.00018 37.9 -0.4 15 105-119 2-16 (139)
170 PRK00440 rfc replication facto 39.4 19 0.00042 40.2 2.3 22 99-120 35-56 (319)
171 PRK13341 recombination factor 39.3 17 0.00036 46.8 1.9 23 99-121 49-71 (725)
172 smart00242 MYSc Myosin. Large 39.0 24 0.00052 44.9 3.3 37 83-119 73-109 (677)
173 COG0606 Predicted ATPase with 38.7 19 0.00041 43.9 2.2 28 96-125 194-224 (490)
174 cd01127 TrwB Bacterial conjuga 38.5 10 0.00022 45.2 -0.2 22 102-123 42-63 (410)
175 PRK11192 ATP-dependent RNA hel 37.9 17 0.00037 43.1 1.6 25 93-119 31-55 (434)
176 PF07724 AAA_2: AAA domain (Cd 37.5 9.7 0.00021 40.1 -0.4 17 103-119 4-20 (171)
177 TIGR00376 DNA helicase, putati 37.0 16 0.00034 46.3 1.2 22 104-125 175-196 (637)
178 TIGR01817 nifA Nif-specific re 36.8 18 0.0004 44.3 1.7 45 69-119 192-236 (534)
179 PF03215 Rad17: Rad17 cell cyc 36.6 18 0.0004 44.6 1.7 30 90-119 31-62 (519)
180 PRK04837 ATP-dependent RNA hel 36.6 18 0.00038 42.9 1.5 25 93-119 38-62 (423)
181 PF10236 DAP3: Mitochondrial r 36.6 18 0.0004 41.6 1.6 29 97-125 18-46 (309)
182 PF06414 Zeta_toxin: Zeta toxi 36.5 13 0.00028 39.5 0.3 20 101-120 14-33 (199)
183 PF08317 Spc7: Spc7 kinetochor 36.4 1.3E+02 0.0028 35.0 8.4 14 404-417 246-259 (325)
184 PRK04406 hypothetical protein; 36.4 2.9E+02 0.0063 25.8 9.0 50 363-427 8-57 (75)
185 cd01383 MYSc_type_VIII Myosin 36.3 31 0.00067 44.1 3.6 35 84-119 74-109 (677)
186 PF05529 Bap31: B-cell recepto 36.2 1.2E+02 0.0025 32.4 7.5 31 393-423 159-189 (192)
187 TIGR02881 spore_V_K stage V sp 35.8 13 0.00029 41.2 0.3 19 103-121 43-61 (261)
188 PF05729 NACHT: NACHT domain 35.6 12 0.00027 37.0 0.0 18 104-121 2-19 (166)
189 PF00038 Filament: Intermediat 35.6 1.8E+02 0.0039 33.0 9.3 64 360-423 19-82 (312)
190 PRK14722 flhF flagellar biosyn 35.5 14 0.0003 43.9 0.4 23 102-124 137-159 (374)
191 TIGR01243 CDC48 AAA family ATP 35.4 49 0.0011 42.4 5.3 53 68-120 173-230 (733)
192 cd01385 MYSc_type_IX Myosin mo 35.3 28 0.0006 44.6 3.0 36 84-120 76-112 (692)
193 PF07106 TBPIP: Tat binding pr 35.2 1.6E+02 0.0034 30.9 8.1 21 361-381 88-108 (169)
194 smart00763 AAA_PrkA PrkA AAA d 35.1 36 0.00078 40.4 3.7 46 69-119 45-95 (361)
195 PF12329 TMF_DNA_bd: TATA elem 34.8 2.6E+02 0.0057 25.9 8.5 36 389-424 34-69 (74)
196 cd01387 MYSc_type_XV Myosin mo 34.6 33 0.00072 43.8 3.5 37 84-120 69-105 (677)
197 PRK10590 ATP-dependent RNA hel 34.6 22 0.00048 42.7 1.9 25 93-119 31-55 (456)
198 cd01381 MYSc_type_VII Myosin m 34.6 33 0.00071 43.8 3.5 36 84-120 68-104 (671)
199 PRK14961 DNA polymerase III su 34.5 24 0.00053 41.2 2.2 41 71-119 14-55 (363)
200 TIGR03007 pepcterm_ChnLen poly 34.3 3.9E+02 0.0083 32.6 12.3 148 275-426 78-235 (498)
201 COG3829 RocR Transcriptional r 34.1 28 0.0006 43.2 2.6 43 67-115 239-281 (560)
202 PRK15422 septal ring assembly 33.5 2E+02 0.0043 27.4 7.3 57 361-425 20-76 (79)
203 PRK11331 5-methylcytosine-spec 33.3 22 0.00047 43.4 1.5 27 310-340 320-346 (459)
204 KOG0735 AAA+-type ATPase [Post 33.1 25 0.00055 44.8 2.1 37 101-137 700-759 (952)
205 PRK10820 DNA-binding transcrip 33.0 24 0.00052 43.4 1.9 47 67-119 198-244 (520)
206 cd01120 RecA-like_NTPases RecA 33.0 15 0.00032 36.0 0.1 18 105-122 2-19 (165)
207 COG5019 CDC3 Septin family pro 32.5 75 0.0016 37.8 5.6 21 99-119 20-40 (373)
208 PRK11637 AmiB activator; Provi 32.4 1.9E+02 0.0041 34.7 9.2 34 392-425 93-126 (428)
209 PRK10416 signal recognition pa 32.3 31 0.00068 39.9 2.6 18 103-120 115-132 (318)
210 COG2256 MGS1 ATPase related to 32.3 18 0.00038 43.4 0.6 43 71-118 22-64 (436)
211 cd01377 MYSc_type_II Myosin mo 32.3 37 0.00079 43.5 3.4 36 83-119 72-108 (693)
212 TIGR00618 sbcc exonuclease Sbc 32.0 24 0.00052 47.0 1.8 23 103-125 27-56 (1042)
213 COG1219 ClpX ATP-dependent pro 31.8 19 0.00042 42.1 0.7 18 102-119 97-114 (408)
214 PF02456 Adeno_IVa2: Adenoviru 31.7 13 0.00029 43.1 -0.5 42 278-326 274-319 (369)
215 PRK10536 hypothetical protein; 31.7 25 0.00054 39.9 1.6 42 69-120 51-92 (262)
216 PRK10865 protein disaggregatio 31.5 34 0.00074 44.8 3.0 43 72-119 567-615 (857)
217 PRK04195 replication factor C 31.2 19 0.00041 43.8 0.6 29 91-119 27-56 (482)
218 KOG1803 DNA helicase [Replicat 31.2 30 0.00064 43.3 2.2 24 103-126 202-225 (649)
219 PF13851 GAS: Growth-arrest sp 30.6 2.7E+02 0.0058 30.5 9.1 35 390-424 88-122 (201)
220 TIGR00614 recQ_fam ATP-depende 30.4 28 0.0006 42.1 1.8 25 92-118 18-42 (470)
221 PRK00771 signal recognition pa 30.4 46 0.001 40.4 3.6 20 102-121 95-114 (437)
222 PF10412 TrwB_AAD_bind: Type I 30.2 13 0.00027 44.0 -1.1 19 103-121 16-34 (386)
223 PRK14974 cell division protein 30.1 47 0.001 38.9 3.5 20 102-121 140-159 (336)
224 PF08317 Spc7: Spc7 kinetochor 30.1 2.9E+02 0.0063 32.2 9.9 14 365-378 183-196 (325)
225 PRK10884 SH3 domain-containing 30.1 1.7E+02 0.0036 32.3 7.5 36 390-425 134-169 (206)
226 TIGR02237 recomb_radB DNA repa 29.8 24 0.00052 37.4 1.0 26 95-120 2-30 (209)
227 PHA02244 ATPase-like protein 29.7 43 0.00092 40.0 3.1 48 68-120 90-137 (383)
228 PRK14962 DNA polymerase III su 29.4 30 0.00065 42.3 1.9 41 71-119 12-53 (472)
229 PF15372 DUF4600: Domain of un 29.4 3.8E+02 0.0083 27.7 9.3 67 359-425 15-81 (129)
230 PRK15424 propionate catabolism 29.4 30 0.00065 43.0 1.9 45 69-119 215-259 (538)
231 TIGR02640 gas_vesic_GvpN gas v 29.3 39 0.00084 37.8 2.6 29 89-119 10-38 (262)
232 TIGR02902 spore_lonB ATP-depen 29.3 32 0.00069 42.6 2.1 43 69-119 61-103 (531)
233 PRK00080 ruvB Holliday junctio 29.1 35 0.00077 39.1 2.3 18 103-120 52-69 (328)
234 TIGR02688 conserved hypothetic 29.1 41 0.00088 40.9 2.8 29 95-125 204-232 (449)
235 PRK15429 formate hydrogenlyase 29.0 31 0.00066 43.9 1.9 44 70-119 373-416 (686)
236 TIGR01618 phage_P_loop phage n 29.0 18 0.00039 39.9 -0.1 20 102-121 12-31 (220)
237 PRK05703 flhF flagellar biosyn 28.9 17 0.00037 43.7 -0.3 22 103-124 222-243 (424)
238 PRK06067 flagellar accessory p 28.8 34 0.00073 37.1 2.0 29 92-120 12-43 (234)
239 KOG0340 ATP-dependent RNA heli 28.7 58 0.0013 38.7 3.8 28 91-120 35-62 (442)
240 PHA02653 RNA helicase NPH-II; 28.6 45 0.00099 42.6 3.3 25 92-118 171-195 (675)
241 PRK05580 primosome assembly pr 28.5 24 0.00052 44.9 0.9 18 102-119 162-179 (679)
242 TIGR02030 BchI-ChlI magnesium 28.5 39 0.00085 39.6 2.5 43 70-120 1-43 (337)
243 TIGR02903 spore_lon_C ATP-depe 28.3 32 0.00069 43.4 1.9 44 69-120 150-193 (615)
244 PRK02119 hypothetical protein; 28.3 4.9E+02 0.011 24.2 9.0 50 363-427 6-55 (73)
245 smart00787 Spc7 Spc7 kinetocho 28.2 3.2E+02 0.007 31.9 9.7 17 363-379 176-192 (312)
246 PRK00295 hypothetical protein; 28.0 4.7E+02 0.01 23.9 8.9 33 395-427 19-51 (68)
247 TIGR02329 propionate_PrpR prop 27.7 30 0.00066 42.8 1.5 46 68-119 207-252 (526)
248 PRK09270 nucleoside triphospha 27.7 46 0.001 36.2 2.8 37 83-119 13-50 (229)
249 cd01123 Rad51_DMC1_radA Rad51_ 27.7 28 0.00062 37.3 1.1 28 92-119 6-36 (235)
250 COG3883 Uncharacterized protei 27.6 2.4E+02 0.0052 32.4 8.3 66 361-427 33-98 (265)
251 CHL00176 ftsH cell division pr 27.4 26 0.00056 44.4 0.9 18 103-120 217-234 (638)
252 COG0464 SpoVK ATPases of the A 27.4 58 0.0012 39.6 3.8 67 69-135 238-332 (494)
253 PF13173 AAA_14: AAA domain 27.3 23 0.00049 34.9 0.3 18 103-120 3-20 (128)
254 PRK04328 hypothetical protein; 27.3 36 0.00079 37.7 1.9 27 92-118 10-39 (249)
255 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.2 1.7E+02 0.0038 29.6 6.6 25 395-419 105-129 (132)
256 cd01379 MYSc_type_III Myosin m 27.1 50 0.0011 42.1 3.3 36 84-120 68-104 (653)
257 TIGR02746 TraC-F-type type-IV 27.1 20 0.00044 45.9 -0.1 22 102-123 430-451 (797)
258 cd01386 MYSc_type_XVIII Myosin 26.9 48 0.001 43.0 3.1 35 84-119 68-103 (767)
259 KOG0729 26S proteasome regulat 26.8 62 0.0013 37.2 3.5 41 98-138 205-270 (435)
260 PF04102 SlyX: SlyX; InterPro 26.8 2.6E+02 0.0057 25.4 7.0 27 397-423 20-46 (69)
261 KOG1532 GTPase XAB1, interacts 26.8 51 0.0011 38.1 2.9 36 102-145 19-54 (366)
262 PF10205 KLRAQ: Predicted coil 26.8 2.2E+02 0.0048 28.3 6.8 39 389-427 34-72 (102)
263 CHL00195 ycf46 Ycf46; Provisio 26.7 48 0.001 40.8 2.9 17 103-119 260-276 (489)
264 cd02021 GntK Gluconate kinase 26.6 23 0.00049 35.4 0.2 15 105-119 2-16 (150)
265 PF00735 Septin: Septin; Inte 26.6 14 0.0003 42.0 -1.5 21 99-119 1-21 (281)
266 PRK11634 ATP-dependent RNA hel 26.6 34 0.00073 43.3 1.7 25 93-119 36-60 (629)
267 PF12775 AAA_7: P-loop contain 26.5 26 0.00056 39.7 0.6 18 102-119 33-50 (272)
268 PRK10917 ATP-dependent DNA hel 26.4 45 0.00098 42.5 2.8 22 99-120 279-300 (681)
269 PLN00206 DEAD-box ATP-dependen 26.3 46 0.00099 40.9 2.7 25 93-119 151-175 (518)
270 PRK09361 radB DNA repair and r 26.2 35 0.00075 36.7 1.5 29 92-120 10-41 (225)
271 TIGR01243 CDC48 AAA family ATP 26.1 53 0.0011 42.1 3.3 17 103-119 488-504 (733)
272 PRK00131 aroK shikimate kinase 26.1 26 0.00057 35.3 0.5 17 103-119 5-21 (175)
273 PRK04325 hypothetical protein; 26.0 2.6E+02 0.0057 26.0 6.9 48 364-426 7-54 (74)
274 PRK02793 phi X174 lysis protei 25.9 5E+02 0.011 24.0 8.6 33 395-427 22-54 (72)
275 TIGR03744 traC_PFL_4706 conjug 25.9 21 0.00046 46.8 -0.2 26 100-125 473-498 (893)
276 TIGR02788 VirB11 P-type DNA tr 25.8 40 0.00087 38.6 2.0 29 91-120 134-162 (308)
277 PRK09039 hypothetical protein; 25.6 2.5E+02 0.0054 33.1 8.4 18 361-378 139-156 (343)
278 TIGR01359 UMP_CMP_kin_fam UMP- 25.6 27 0.00059 36.0 0.5 15 105-119 2-16 (183)
279 PRK04537 ATP-dependent RNA hel 25.6 37 0.00079 42.4 1.7 25 93-119 39-63 (572)
280 smart00488 DEXDc2 DEAD-like he 25.5 59 0.0013 37.0 3.2 35 79-119 10-44 (289)
281 smart00489 DEXDc3 DEAD-like he 25.5 59 0.0013 37.0 3.2 35 79-119 10-44 (289)
282 KOG0926 DEAH-box RNA helicase 25.5 37 0.00081 43.8 1.7 18 102-119 271-288 (1172)
283 PRK07261 topology modulation p 25.2 28 0.0006 36.4 0.5 15 105-119 3-17 (171)
284 KOG0335 ATP-dependent RNA heli 25.1 27 0.00059 42.7 0.5 20 98-119 109-128 (482)
285 PF02367 UPF0079: Uncharacteri 25.1 25 0.00053 35.6 0.1 33 89-123 4-36 (123)
286 cd01850 CDC_Septin CDC/Septin. 24.7 26 0.00057 39.6 0.2 21 99-119 1-21 (276)
287 COG4942 Membrane-bound metallo 24.6 2.7E+02 0.0059 33.9 8.4 17 361-377 40-56 (420)
288 PF02534 T4SS-DNA_transf: Type 24.6 44 0.00096 40.0 2.1 22 103-126 45-66 (469)
289 PRK06696 uridine kinase; Valid 24.5 57 0.0012 35.4 2.7 35 84-119 5-39 (223)
290 PRK06995 flhF flagellar biosyn 24.5 26 0.00056 43.0 0.1 20 103-122 257-276 (484)
291 COG1125 OpuBA ABC-type proline 24.4 28 0.0006 39.8 0.4 13 107-119 32-44 (309)
292 PRK00846 hypothetical protein; 24.4 6E+02 0.013 24.1 8.9 49 364-427 11-59 (77)
293 PF08614 ATG16: Autophagy prot 24.4 4.4E+02 0.0096 28.3 9.4 58 358-423 115-172 (194)
294 PF12325 TMF_TATA_bd: TATA ele 24.3 5.2E+02 0.011 26.3 9.1 21 359-379 16-36 (120)
295 PF09726 Macoilin: Transmembra 24.0 2.9E+02 0.0062 35.8 9.0 31 395-425 488-518 (697)
296 TIGR02639 ClpA ATP-dependent C 23.8 54 0.0012 42.2 2.7 37 82-119 459-501 (731)
297 cd01126 TraG_VirD4 The TraG/Tr 23.7 37 0.00081 39.8 1.2 20 105-126 2-21 (384)
298 TIGR03819 heli_sec_ATPase heli 23.7 39 0.00084 39.6 1.4 29 91-120 168-196 (340)
299 cd01393 recA_like RecA is a b 23.7 48 0.001 35.4 2.0 29 92-120 6-37 (226)
300 KOG3859 Septins (P-loop GTPase 23.6 34 0.00074 39.4 0.8 24 96-119 36-59 (406)
301 PHA02624 large T antigen; Prov 23.6 38 0.00083 42.8 1.3 29 93-121 420-450 (647)
302 TIGR01389 recQ ATP-dependent D 23.6 42 0.00091 41.8 1.7 27 91-119 19-45 (591)
303 PRK14723 flhF flagellar biosyn 23.4 64 0.0014 41.8 3.3 19 103-121 186-204 (767)
304 TIGR03689 pup_AAA proteasome A 23.4 29 0.00062 42.9 0.3 16 104-119 218-233 (512)
305 PF08826 DMPK_coil: DMPK coile 23.4 2.7E+02 0.0057 25.3 6.2 24 390-413 34-57 (61)
306 PRK11889 flhF flagellar biosyn 23.3 60 0.0013 39.4 2.8 19 103-121 242-260 (436)
307 PF13476 AAA_23: AAA domain; P 23.3 25 0.00054 36.0 -0.3 17 103-119 20-36 (202)
308 PRK08118 topology modulation p 23.3 32 0.00069 35.9 0.5 14 105-118 4-17 (167)
309 PRK01297 ATP-dependent RNA hel 23.3 37 0.0008 41.0 1.1 27 91-119 115-141 (475)
310 cd00464 SK Shikimate kinase (S 23.2 32 0.0007 34.1 0.5 16 104-119 1-16 (154)
311 KOG0354 DEAD-box like helicase 23.2 51 0.0011 42.4 2.3 27 90-119 67-93 (746)
312 cd01428 ADK Adenylate kinase ( 23.2 32 0.0007 35.6 0.5 15 105-119 2-16 (194)
313 TIGR01313 therm_gnt_kin carboh 23.1 29 0.00063 35.2 0.1 14 105-118 1-14 (163)
314 KOG0735 AAA+-type ATPase [Post 23.1 80 0.0017 40.7 3.8 26 102-135 431-456 (952)
315 PF13555 AAA_29: P-loop contai 23.0 27 0.00059 31.4 -0.0 15 105-119 26-40 (62)
316 KOG0250 DNA repair protein RAD 22.9 2.5E+02 0.0055 37.7 8.3 38 389-426 395-432 (1074)
317 COG0419 SbcC ATPase involved i 22.8 53 0.0011 43.2 2.5 22 103-124 26-54 (908)
318 PRK04296 thymidine kinase; Pro 22.8 23 0.0005 37.6 -0.6 23 104-126 4-26 (190)
319 KOG0651 26S proteasome regulat 22.8 65 0.0014 37.8 2.8 73 67-139 126-226 (388)
320 PLN02199 shikimate kinase 22.5 1.1E+02 0.0023 35.7 4.5 31 86-119 89-119 (303)
321 TIGR02173 cyt_kin_arch cytidyl 22.4 39 0.00084 34.2 0.9 16 104-119 2-17 (171)
322 PF04859 DUF641: Plant protein 22.4 8.9E+02 0.019 25.1 11.7 100 330-430 18-122 (131)
323 KOG0804 Cytoplasmic Zn-finger 22.4 3.7E+02 0.0081 33.0 8.9 20 360-379 383-402 (493)
324 TIGR03881 KaiC_arch_4 KaiC dom 22.3 41 0.00088 36.2 1.1 28 93-120 8-38 (229)
325 PF01486 K-box: K-box region; 22.2 6.1E+02 0.013 24.3 9.0 21 360-380 20-40 (100)
326 TIGR03345 VI_ClpV1 type VI sec 22.1 74 0.0016 41.8 3.5 43 73-120 566-614 (852)
327 cd01394 radB RadB. The archaea 22.0 53 0.0012 35.0 1.9 29 92-120 6-37 (218)
328 PRK15483 type III restriction- 22.0 56 0.0012 43.4 2.4 15 106-120 63-77 (986)
329 TIGR02322 phosphon_PhnN phosph 22.0 30 0.00065 35.7 -0.0 17 104-120 3-19 (179)
330 PRK14963 DNA polymerase III su 21.8 46 0.001 41.0 1.6 41 71-119 12-53 (504)
331 PRK11034 clpA ATP-dependent Cl 21.8 75 0.0016 41.3 3.4 40 74-118 459-504 (758)
332 PF05496 RuvB_N: Holliday junc 21.7 81 0.0018 35.4 3.2 43 71-118 22-66 (233)
333 cd02020 CMPK Cytidine monophos 21.7 36 0.00078 33.3 0.5 15 105-119 2-16 (147)
334 TIGR02639 ClpA ATP-dependent C 21.6 49 0.0011 42.5 1.8 35 93-127 194-228 (731)
335 KOG0730 AAA+-type ATPase [Post 21.6 52 0.0011 41.7 1.9 36 103-138 469-527 (693)
336 TIGR02894 DNA_bind_RsfA transc 21.6 5E+02 0.011 27.8 8.7 36 393-428 116-151 (161)
337 KOG2185 Predicted RNA-processi 21.6 4.8E+02 0.01 31.8 9.4 32 316-347 324-355 (486)
338 KOG0726 26S proteasome regulat 21.6 85 0.0018 36.6 3.4 35 104-138 221-278 (440)
339 KOG2228 Origin recognition com 21.6 1.4E+02 0.0031 35.5 5.2 71 76-150 27-119 (408)
340 PRK05022 anaerobic nitric oxid 21.5 51 0.0011 40.4 1.9 43 71-119 185-227 (509)
341 PF07795 DUF1635: Protein of u 21.5 3.9E+02 0.0084 29.9 8.2 33 390-422 28-60 (214)
342 KOG4603 TBP-1 interacting prot 21.5 2.4E+02 0.0053 30.4 6.4 63 360-423 80-144 (201)
343 TIGR03158 cas3_cyano CRISPR-as 21.5 58 0.0012 38.1 2.2 25 95-119 7-31 (357)
344 PRK10867 signal recognition pa 21.4 72 0.0016 38.7 3.0 19 103-121 101-119 (433)
345 KOG2129 Uncharacterized conser 21.4 8.1E+02 0.018 30.0 11.2 23 358-380 252-274 (552)
346 PRK12726 flagellar biosynthesi 21.4 30 0.00066 41.5 -0.1 21 103-123 207-227 (407)
347 PF10923 DUF2791: P-loop Domai 21.2 59 0.0013 39.3 2.2 28 93-120 40-67 (416)
348 smart00787 Spc7 Spc7 kinetocho 21.2 3.6E+02 0.0078 31.6 8.4 13 82-94 64-76 (312)
349 PRK11388 DNA-binding transcrip 21.2 52 0.0011 41.4 1.8 45 69-119 321-365 (638)
350 PF14257 DUF4349: Domain of un 21.2 4.9E+02 0.011 29.1 9.3 132 269-426 57-193 (262)
351 TIGR02880 cbbX_cfxQ probable R 21.0 33 0.00073 38.9 0.1 17 104-120 60-76 (284)
352 KOG2959 Transcriptional regula 20.9 92 0.002 34.0 3.3 55 1022-1076 115-187 (238)
353 PRK08233 hypothetical protein; 20.9 36 0.00079 34.7 0.4 15 105-119 6-20 (182)
354 PF04977 DivIC: Septum formati 20.9 2.1E+02 0.0046 25.6 5.3 30 392-421 21-50 (80)
355 COG0630 VirB11 Type IV secreto 20.8 32 0.0007 39.7 -0.0 18 103-120 144-161 (312)
356 PTZ00014 myosin-A; Provisional 20.8 82 0.0018 41.3 3.5 35 85-120 166-201 (821)
357 PRK06217 hypothetical protein; 20.8 37 0.00079 35.6 0.4 15 105-119 4-18 (183)
358 CHL00181 cbbX CbbX; Provisiona 20.7 51 0.0011 37.6 1.5 16 105-120 62-77 (287)
359 TIGR00643 recG ATP-dependent D 20.7 66 0.0014 40.6 2.6 18 102-119 256-273 (630)
360 PF14662 CCDC155: Coiled-coil 20.7 4.6E+02 0.0099 28.9 8.4 20 361-380 38-57 (193)
361 TIGR02397 dnaX_nterm DNA polym 20.6 60 0.0013 37.1 2.1 22 98-119 31-53 (355)
362 cd02023 UMPK Uridine monophosp 20.6 33 0.00071 36.1 -0.0 15 105-119 2-16 (198)
363 PRK13729 conjugal transfer pil 20.5 2.2E+02 0.0048 35.1 6.7 22 397-418 99-120 (475)
364 PRK13767 ATP-dependent helicas 20.5 48 0.0011 43.5 1.4 23 95-119 42-64 (876)
365 TIGR00602 rad24 checkpoint pro 20.4 56 0.0012 41.5 1.9 17 104-120 112-128 (637)
366 cd01983 Fer4_NifH The Fer4_Nif 20.4 38 0.00082 30.0 0.3 18 105-122 2-19 (99)
367 PRK12724 flagellar biosynthesi 20.4 72 0.0016 38.8 2.7 19 103-121 224-242 (432)
368 PRK14970 DNA polymerase III su 20.3 68 0.0015 37.3 2.5 42 71-120 15-57 (367)
369 cd01124 KaiC KaiC is a circadi 20.3 43 0.00093 34.4 0.7 15 105-119 2-16 (187)
370 PRK11608 pspF phage shock prot 20.3 56 0.0012 37.8 1.7 42 72-119 5-46 (326)
371 KOG0971 Microtubule-associated 20.3 3.7E+02 0.008 35.7 8.7 19 361-379 370-388 (1243)
372 PRK13729 conjugal transfer pil 20.1 3.1E+02 0.0066 34.0 7.8 13 700-712 276-288 (475)
373 TIGR00231 small_GTP small GTP- 20.0 34 0.00075 32.5 -0.0 15 105-119 4-18 (161)
No 1
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-84 Score=775.96 Aligned_cols=396 Identities=56% Similarity=0.817 Sum_probs=360.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCC--ccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL--LERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~--~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~s 96 (1104)
+..++|.|+|||||+++++...++.+.|.|+++..+...... +.+.. +..|.||+||+++++|++||+..++|||++
T Consensus 3 ~~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 3 GTEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSK-PEKYEFDRVFGEESTQEDVYERTTKPLLLS 81 (675)
T ss_pred CccceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccccc-ccceeeeeecCCCCCHHHHHHhccHHHHHH
Confidence 356799999999999999888899999999999988766432 23322 689999999999999999999999999999
Q ss_pred HhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCCCCceee
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDSTPLRLL 170 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~ 170 (1104)
|+.|||++|||||||||||||||. ||+|+++.+||++|....++.|.|.|||+|||||.|+|||+++..+++++
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~ir 161 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLR 161 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEe
Confidence 999999999999999999999996 68899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEe
Q 001305 171 DDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250 (1104)
Q Consensus 171 ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVD 250 (1104)
+|+.+|++|.||+++.|.|+++++++|..|+++|+++.|.+|..|||||+||+|+|.+..+... . ..++|+|||
T Consensus 162 ED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-----~-~~s~L~lID 235 (675)
T KOG0242|consen 162 EDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-----S-RVSKLNLID 235 (675)
T ss_pred EcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-----c-hhheehhhh
Confidence 9999999999999999999999999999999999999999999999999999999998766532 2 778999999
Q ss_pred cCCCccccccccccccccccccchhhHHHHHHHHHHhcCC-CCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCCh
Q 001305 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-RNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329 (1104)
Q Consensus 251 LAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~ 329 (1104)
||||||+.++++.|.|++||++||+||++||+||++|+.+ ...||||||||||||||++|||||+|+|||||+|+..|+
T Consensus 236 LAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~ 315 (675)
T KOG0242|consen 236 LAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHY 315 (675)
T ss_pred hhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHH
Confidence 9999999999999999999999999999999999999988 567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHH-HHHHHHH
Q 001305 330 EQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMD-RQIRELT 408 (1104)
Q Consensus 330 eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele-~qi~EL~ 408 (1104)
+||.+||+||+|||.|++++++|+.+.++.+++.+++++..|+.++..++...... ......+..++ +++.++.
T Consensus 316 ~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~-----~~~~~~~~~~e~~~~~~~~ 390 (675)
T KOG0242|consen 316 EETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPE-----REQELLIQKLEKEEVEELL 390 (675)
T ss_pred HHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccc-----hhhHHHHhHhhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999877654322 13455566666 7777777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001305 409 KERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 409 ~erd~~q~~i~~L~q~~~ 426 (1104)
.+++.++...+.+.+...
T Consensus 391 ~~~~~~~~~~~~~~~~~~ 408 (675)
T KOG0242|consen 391 PQRSEIQSLVELLKRLSA 408 (675)
T ss_pred hhhhHHHHHHHHHhhhcc
Confidence 777777777776665544
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-84 Score=777.56 Aligned_cols=358 Identities=37% Similarity=0.615 Sum_probs=327.2
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~sv 97 (1104)
..+.+|+|+|||||++.+|.......++.|.+ ...|.++...... ...+.|+||+||||.+.|.+||+.++.|+|..|
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccc-cccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 34569999999999999998888788888888 4457777663322 246899999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCCcccC--------------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCC
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMG--------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTD 163 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~--------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~ 163 (1104)
+.|||||||||||||+||||||. |||||++.+||+.++... .+|+|+|||+|+|||.|+|||++.
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999995 699999999999998776 799999999999999999999876
Q ss_pred CC---CceeeeCC-----CCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccC
Q 001305 164 ST---PLRLLDDP-----EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG 235 (1104)
Q Consensus 164 s~---~L~i~ed~-----~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~ 235 (1104)
.. .+++.+++ .+|++|.||.++.|+++.+++.+|..|.+.|++++|.||..|||||+||+|+|...... .
T Consensus 204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t--~ 281 (1041)
T KOG0243|consen 204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENT--P 281 (1041)
T ss_pred cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCC--C
Confidence 53 45555554 78999999999999999999999999999999999999999999999999999765443 3
Q ss_pred CCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCce
Q 001305 236 AGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNAR 315 (1104)
Q Consensus 236 ~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSk 315 (1104)
.+..-+..|+|+||||||||.++++|+.+.|.+|++.||+||++||+||+||..+ .+|||||+|||||||||+|||.++
T Consensus 282 ~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGkTK 360 (1041)
T KOG0243|consen 282 EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGKTK 360 (1041)
T ss_pred cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCCce
Confidence 4555678899999999999999999999999999999999999999999999984 679999999999999999999999
Q ss_pred eeEEEecCCCCCChHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001305 316 TAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQST 381 (1104)
Q Consensus 316 T~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~~~ 381 (1104)
|+||+||||+..+++||++||.||.|||+|+|+|.+|.-+..+.+++.|-.||.+|+.+|.+.+..
T Consensus 361 T~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 361 TCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred eEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999999999999999999999999999999999988765
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-83 Score=760.22 Aligned_cols=353 Identities=37% Similarity=0.564 Sum_probs=317.8
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCC-------CChHHHHHHHHHHHH
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCE-------CPTRQVYEEAAKEVT 94 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~-------asQeeVYe~vv~plV 94 (1104)
..|+|+|||||++.+|..+...+++...++++-++++.... ....|+||++|+.. ++|.+||+.++.+++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k---~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK---DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc---cCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 35999999999999999886666666655555454444222 23459999999754 689999999999999
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccC--------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCC-CC
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMG--------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLS-TD 163 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~--------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs-~~ 163 (1104)
+++++|||+||||||||||||||||+ ||||+++++||..|...+ +..|.|.|||+|||||+|+|||+ +.
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 99999999999999999999999996 799999999999997654 57899999999999999999999 44
Q ss_pred C-CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeE
Q 001305 164 S-TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSIL 242 (1104)
Q Consensus 164 s-~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~ 242 (1104)
+ .+|+++++|..|+||++|+.+.|.|+.|+..+|..|+++|++++|+||+.|||||+||+|++.+....... +..+..
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~-~l~sek 239 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT-GLDSEK 239 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC-CCccee
Confidence 3 68999999999999999999999999999999999999999999999999999999999999998765432 244678
Q ss_pred EEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC------CCCcccCCCCchhhHHhhhccCCCcee
Q 001305 243 SASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK------GRNAHIPYRDSKLTRILQNSLGGNART 316 (1104)
Q Consensus 243 ~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~------gk~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1104)
+|+|+|||||||||++.+++.|.|+|||.+|||||++||+||.||+. ++..+||||||.||+||++.||||+||
T Consensus 240 ~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKT 319 (1221)
T KOG0245|consen 240 VSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKT 319 (1221)
T ss_pred eeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchh
Confidence 99999999999999999999999999999999999999999999974 234599999999999999999999999
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhc
Q 001305 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQ 379 (1104)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~ 379 (1104)
+||++|||+..||+|||+||+||.|||+|+|+|.||+.++.+ ||+.|++|+.+|+..|+...
T Consensus 320 aMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 320 AMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQG 381 (1221)
T ss_pred hhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999998877 88999999999999987654
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-83 Score=749.14 Aligned_cols=358 Identities=42% Similarity=0.602 Sum_probs=324.0
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEecC-ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECINN-NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~-~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
...+|+|+||+||++..+...+....+.+... ..+.+.++.......++.|+||.||+++++|++||..++.|+|++|+
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 35789999999999998876665554444332 23444444333334577899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCCcccC-------CChHhHHHHHHHHhhhccc-ceEEEEeeEEEEecccccccCCCCC-CCcee
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG-------GITEYAIQDIYDYIDTHQE-REFVLKFSAMEIYNESVRDLLSTDS-TPLRL 169 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~-------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLLs~~s-~~L~i 169 (1104)
+|||+||||||||||||||||. ||+|+++.+||..|+..++ ..|.|+|||+|||||.|+|||++.+ ..+.+
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~l 162 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLEL 162 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCcee
Confidence 9999999999999999999995 7999999999999988763 4699999999999999999999988 58999
Q ss_pred eeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEE
Q 001305 170 LDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFV 249 (1104)
Q Consensus 170 ~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fV 249 (1104)
++++..|+||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++.. ....+......|+|+||
T Consensus 163 re~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~--~~~~~~~~~~~~rlnlv 240 (574)
T KOG4280|consen 163 REDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSE--KSDGGLMSGRSSKLNLV 240 (574)
T ss_pred eEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeec--ccCCCccccccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999832 22345667789999999
Q ss_pred ecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCCh
Q 001305 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329 (1104)
Q Consensus 250 DLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~ 329 (1104)
|||||||..++++.|.|++|+.+||+||++||+||.+|+.++++||||||||||+||||+|||||+|+|||||+|+..++
T Consensus 241 DLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 241 DLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNY 320 (574)
T ss_pred eccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhh
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhcC
Q 001305 330 EQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQS 380 (1104)
Q Consensus 330 eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~~ 380 (1104)
+||++||+||+|||.|+|+|.+|+++. .++++.||+||++|+.++...+.
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999999999875 56889999999999999988754
No 5
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=7.8e-84 Score=637.18 Aligned_cols=152 Identities=69% Similarity=1.140 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhhhcCcceeeeeeeeeeecCCCCCceeEEeeeeeehhccc----CCCC-----ccchhhhhHHhhHHH
Q 001305 931 EFERQRKEIIELWDACYVPLVHRTYFFLLFKGDPSDSVYMEVELRRLSFLKG----GNIT-----KESFNSSLKGLYRER 1001 (1104)
Q Consensus 931 ~F~~~~~~IIeLW~~C~VslvHRTyFfLLfkGd~~D~iYmEVElRRLs~lk~----~~~~-----~~~~~ss~k~l~~er 1001 (1104)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+ |+++ ++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999 4433 789999999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhccCCCCcchhhhhhhhhcCCCCcchhhHHHHHHHHHHhhhcCCCCcccccccccccc
Q 001305 1002 ETLSKQVHQKFSRKEREELYKKWGIALNTKQRSLQLARRIWSSTKDMNHIKESASLVAKLIDFVQPGQAPKEIFGLSFSH 1081 (1104)
Q Consensus 1002 ~~l~k~~~~kl~~~ere~ly~kwgi~l~~k~r~lql~~~lwt~~~d~~hv~esa~~vaklv~~~e~~~~~kemf~l~f~~ 1081 (1104)
+||||||++||+.+|||+||.||||||+||||||||||+|||+|+||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 001305 1082 G 1082 (1104)
Q Consensus 1082 ~ 1082 (1104)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.2e-78 Score=686.17 Aligned_cols=337 Identities=40% Similarity=0.576 Sum_probs=309.1
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
.+.+|+|+||+||++..|...++.......+ ..++.+... .+.+.|.||+||.|+++|++||+.++.|+|++||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-----~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-----KETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-----cccccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 5778999999999999987766544333333 445554432 2347999999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCCCCce
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1104)
.|||+||||||||||||||||. ||+||++++||++|.... ..+|.|+|||+|||+|+|+|||++...++.
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nls 159 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLS 159 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCce
Confidence 9999999999999999999994 799999999999998865 468999999999999999999999999999
Q ss_pred eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001305 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1104)
Q Consensus 169 i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1104)
+++|...+++|.|+++..|.+++++++++..|..+|+++.|+||.+|||||.||+|+|.+...+ ....+.|+|+|
T Consensus 160 vheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e-----~~~~~~gkLyL 234 (607)
T KOG0240|consen 160 VHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE-----DKRKLSGKLYL 234 (607)
T ss_pred eecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc-----chhhccccEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987654 33468999999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCC
Q 001305 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1104)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1104)
|||||||+++++++.|.-+.|+++||+||.|||+||++|+.|...|||||||||||||||+|||||||.||+|++|+..+
T Consensus 235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHH
Q 001305 329 VEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQK 366 (1104)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~Lqk 366 (1104)
..||.+||+|++|||.|+|.+.+|...+.++..+.|..
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~ 352 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEK 352 (607)
T ss_pred ccccccchhhccccccccchhhhhhHhhHHHHHHHHHH
Confidence 99999999999999999999999999888877766543
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.8e-77 Score=726.91 Aligned_cols=342 Identities=39% Similarity=0.615 Sum_probs=301.1
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhc
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN 99 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~ 99 (1104)
++.+|+|||||||++..|. +. ..+....++++.+. .+.|.||+||+++++|++||+.++.|+|+++++
T Consensus 96 ~ds~VkV~VRVRPl~~~E~--g~-~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLd 163 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE--GE-MIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLA 163 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC--CC-eeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3679999999999998763 22 23333455555543 358999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCCCCcccC----------------CChHhHHHHHHHHhhhc------ccceEEEEeeEEEEeccccc
Q 001305 100 GINSTFFAYGQTSSGKTYTMG----------------GITEYAIQDIYDYIDTH------QEREFVLKFSAMEIYNESVR 157 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~----------------GIi~rai~dLF~~I~~~------~~~~f~V~vS~lEIYNE~V~ 157 (1104)
|||+||||||||||||||||+ ||+||++++||..|... ....|.|+|||+|||||+||
T Consensus 164 GyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~ 243 (1320)
T PLN03188 164 GFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQIT 243 (1320)
T ss_pred CCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcce
Confidence 999999999999999999995 58999999999998653 24579999999999999999
Q ss_pred ccCCCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCC
Q 001305 158 DLLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAG 237 (1104)
Q Consensus 158 DLLs~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~ 237 (1104)
|||++....+.+++++.+|++|.||+++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|++..... ..+
T Consensus 244 DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~-~dg 322 (1320)
T PLN03188 244 DLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV-ADG 322 (1320)
T ss_pred eccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeeccc-CCC
Confidence 9999988899999999999999999999999999999999999999999999999999999999999998754432 223
Q ss_pred CceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC----CCCcccCCCCchhhHHhhhccCCC
Q 001305 238 NSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK----GRNAHIPYRDSKLTRILQNSLGGN 313 (1104)
Q Consensus 238 ~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~----gk~~hIPYRDSKLTrLLqdsLGGN 313 (1104)
......|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+|||++||||
T Consensus 323 ~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGN 402 (1320)
T PLN03188 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1320)
T ss_pred CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCC
Confidence 3456789999999999999999999999999999999999999999999974 356799999999999999999999
Q ss_pred ceeeEEEecCCCCCChHHHHHHHHHHHHHhhcccccccccccCHH-----HHHHHHHHHHHHHHHH
Q 001305 314 ARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDK-----ALVKQLQKELARLENE 374 (1104)
Q Consensus 314 SkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~-----aLik~LqkEi~rLe~e 374 (1104)
|+|+|||||||+..+++||++||+||+|||.|+|+|.+|..+.+. .+|++|+.||.+|+..
T Consensus 403 SKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred ceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999876543 2445555555555544
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.2e-76 Score=660.26 Aligned_cols=321 Identities=44% Similarity=0.679 Sum_probs=296.9
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCc--------cCCCCCCccccCeecCCCCChHHHHHHHHHHHH
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLL--------ERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~--------e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV 94 (1104)
+|+|+|||||+++.|...+....|.+.++.++++.+... .....++.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999888888889998888887765432 112346799999999999999999999999999
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCCCCc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPL 167 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~~L 167 (1104)
+++++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999996 699999999999998776 67899999999999999999999988899
Q ss_pred eeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEE
Q 001305 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247 (1104)
Q Consensus 168 ~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~ 247 (1104)
.+++++.++++|.|++++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|.+..... ........|+|+
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~--~~~~~~~~s~l~ 238 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA--SINQQVRIGKLS 238 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC--CCCCcEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998875431 123457889999
Q ss_pred EEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CcccCCCCchhhHHhhhccCCCceeeEEEecCCC
Q 001305 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPA 325 (1104)
Q Consensus 248 fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs 325 (1104)
|||||||||..+++..|.+++|+++||+||++|++||.+|+.+. ..||||||||||+||+|+|||||+|+|||||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999865 3899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhc
Q 001305 326 RSHVEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 326 ~~~~eETLsTLrFAsrAK~I 345 (1104)
..+++||++||+||+|||+|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999986
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.1e-75 Score=658.05 Aligned_cols=315 Identities=39% Similarity=0.596 Sum_probs=285.3
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCC
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGI 101 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~ 101 (1104)
.+|+|+|||||++..|...+....+...++.++++.... ++.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~------~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHP------PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCC------CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 379999999999998876555555555555666654331 46899999999999999999999999999999999
Q ss_pred CcceeeeccCCCCCCcccC--------------CChHhHHHHHHHHhhhc-----ccceEEEEeeEEEEecccccccCCC
Q 001305 102 NSTFFAYGQTSSGKTYTMG--------------GITEYAIQDIYDYIDTH-----QEREFVLKFSAMEIYNESVRDLLST 162 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~--------------GIi~rai~dLF~~I~~~-----~~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1104)
|+||||||||||||||||+ ||+|+++++||..+... ....|.|++||+|||||+|||||++
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 9999999999999999995 68999999999988654 3467999999999999999999999
Q ss_pred CCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeE
Q 001305 163 DSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSIL 242 (1104)
Q Consensus 163 ~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~ 242 (1104)
....+.+++++.+|++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... .......
T Consensus 155 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~~~~ 231 (337)
T cd01373 155 TSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK---ASSTNIR 231 (337)
T ss_pred CCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecC---CCCCcEE
Confidence 8889999999999999999999999999999999999999999999999999999999999999876442 2222457
Q ss_pred EEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC---CCCcccCCCCchhhHHhhhccCCCceeeEE
Q 001305 243 SASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK---GRNAHIPYRDSKLTRILQNSLGGNARTAII 319 (1104)
Q Consensus 243 ~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~---gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI 319 (1104)
.|+|+|||||||||..++++.|.+++|+++||+||++|++||.+|+. ++..||||||||||+||||+|||||+|+||
T Consensus 232 ~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I 311 (337)
T cd01373 232 TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTII 311 (337)
T ss_pred EEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEE
Confidence 89999999999999999999999999999999999999999999974 346799999999999999999999999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHhhc
Q 001305 320 CTMSPARSHVEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 320 ~tISPs~~~~eETLsTLrFAsrAK~I 345 (1104)
|||||+..+++||++||+||+|||.|
T Consensus 312 ~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 312 ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999986
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.7e-74 Score=648.74 Aligned_cols=317 Identities=33% Similarity=0.543 Sum_probs=289.7
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCcc--------CCCCCCccccCeecCCCCChHHHHHHHHHHH
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLE--------RSVYPPAYTFDRVFGCECPTRQVYEEAAKEV 93 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e--------~s~~~~sF~FD~VF~~~asQeeVYe~vv~pl 93 (1104)
.+|+|||||||+++.|...++...+.+.++++|.+..+... ....++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 37999999999999998877888888999999988765321 1335678999999999999999999999999
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCCC--
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDST-- 165 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s~-- 165 (1104)
|+++++|||+||||||||||||||||+ ||+|+++++||+.+.. |.|++||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 999999999999999999999999997 6999999999999865 999999999999999999987543
Q ss_pred ----CceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCC---CC
Q 001305 166 ----PLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGA---GN 238 (1104)
Q Consensus 166 ----~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~---~~ 238 (1104)
++.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+......+. ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 69999999999999999999999999999999999999999999999999999999999998765432111 23
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC-----CCcccCCCCchhhHHhhhccCCC
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-----RNAHIPYRDSKLTRILQNSLGGN 313 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-----k~~hIPYRDSKLTrLLqdsLGGN 313 (1104)
.....|+|+|||||||||..++++.|.+++|+++||+||++|++||.+|+.+ +..||||||||||+||+++||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999999999999999863 46799999999999999999999
Q ss_pred ceeeEEEecCCCCCChHHHHHHHHHHHHHh
Q 001305 314 ARTAIICTMSPARSHVEQSRNTLLFASCAK 343 (1104)
Q Consensus 314 SkT~mI~tISPs~~~~eETLsTLrFAsrAK 343 (1104)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-74 Score=667.40 Aligned_cols=379 Identities=34% Similarity=0.543 Sum_probs=332.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCC---ccCCCCCCccccCeecCCC-------CChHHHHHHHH
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL---LERSVYPPAYTFDRVFGCE-------CPTRQVYEEAA 90 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~---~e~s~~~~sF~FD~VF~~~-------asQeeVYe~vv 90 (1104)
+.+|+|+|||||++.+|+.....+.+++...++++..++. .+.+..|++|.||++|.+. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4589999999999999998888888887777776654432 3344678999999999764 58999999999
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLST 162 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1104)
..+++++|+|||+||||||||||||||||+ ||||+.+..||..|.... ...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 999999999999999999999999999996 799999999999997644 568999999999999999999998
Q ss_pred CC--CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCce
Q 001305 163 DS--TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240 (1104)
Q Consensus 163 ~s--~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~ 240 (1104)
.. ..++++++.--|.||.||++..|.|++++..++..|+++|++++|+||..|||||+||.|.|.+.-.+. ..+.+.
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~-ktg~Sg 241 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL-KTGHSG 241 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc-ccCcch
Confidence 65 579999999999999999999999999999999999999999999999999999999999998875542 344555
Q ss_pred eEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC-----CCCcccCCCCchhhHHhhhccCCCce
Q 001305 241 ILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK-----GRNAHIPYRDSKLTRILQNSLGGNAR 315 (1104)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~-----gk~~hIPYRDSKLTrLLqdsLGGNSk 315 (1104)
...|+|.|||||||||+.++++.|.|++||++||+||.+||.||.+|+. |+..+||||||.||+||+|+|||||+
T Consensus 242 eKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsr 321 (1714)
T KOG0241|consen 242 EKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSR 321 (1714)
T ss_pred hheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCce
Confidence 6789999999999999999999999999999999999999999999974 34669999999999999999999999
Q ss_pred eeEEEecCCCCCChHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHH
Q 001305 316 TAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQ 395 (1104)
Q Consensus 316 T~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~ 395 (1104)
|+||+||||++.+|+||++||+||.|||.|+|.+.+|...... .++.|+.|+..|+.+|..............+++.+.
T Consensus 322 TvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-virElReEve~lr~qL~~ae~~~~~el~e~l~esek 400 (1714)
T KOG0241|consen 322 TVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VIRELREEVEKLREQLEQAEAMKLPELKEKLEESEK 400 (1714)
T ss_pred eEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887554 788999999999999988544322222223334444
Q ss_pred HHHHHH
Q 001305 396 VIEEMD 401 (1104)
Q Consensus 396 ~i~ele 401 (1104)
.|++|.
T Consensus 401 li~ei~ 406 (1714)
T KOG0241|consen 401 LIKEIT 406 (1714)
T ss_pred HHHHHH
Confidence 444443
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.5e-73 Score=639.54 Aligned_cols=329 Identities=37% Similarity=0.562 Sum_probs=297.8
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCc--cCCCCCCccccCeecCCC-------CChHHHHHHHHHH
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLL--ERSVYPPAYTFDRVFGCE-------CPTRQVYEEAAKE 92 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~--e~s~~~~sF~FD~VF~~~-------asQeeVYe~vv~p 92 (1104)
++|+|+||+||++..|...++...+.+.+ ..+.+.++.. .....++.|.||+||++. ++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 47999999999999998888777776655 6666655432 113346789999999999 9999999999999
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhccc--ceEEEEeeEEEEecccccccCCCCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQE--REFVLKFSAMEIYNESVRDLLSTDS 164 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~--~~f~V~vS~lEIYNE~V~DLLs~~s 164 (1104)
+|+++++|+|+||||||||||||||||+ ||+|+++++||+.+..... ..|.|++||+|||||+|||||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 9999999999999999999999999997 7899999999999977653 6899999999999999999999874
Q ss_pred ---CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCcee
Q 001305 165 ---TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSI 241 (1104)
Q Consensus 165 ---~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~ 241 (1104)
..+.+++++.+|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+...... ......
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~-~~~~~~ 238 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE-TDLTTE 238 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC-CCCCce
Confidence 6899999999999999999999999999999999999999999999999999999999999987654321 124456
Q ss_pred EEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC-------CCcccCCCCchhhHHhhhccCCCc
Q 001305 242 LSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-------RNAHIPYRDSKLTRILQNSLGGNA 314 (1104)
Q Consensus 242 ~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-------k~~hIPYRDSKLTrLLqdsLGGNS 314 (1104)
..|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+||+++||||+
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s 318 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS 318 (356)
T ss_pred EEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc
Confidence 8999999999999999999999999999999999999999999999764 357999999999999999999999
Q ss_pred eeeEEEecCCCCCChHHHHHHHHHHHHHhhcccccccc
Q 001305 315 RTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVN 352 (1104)
Q Consensus 315 kT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN 352 (1104)
+|+||+||||+..+++||++||+||+++++|++.|++|
T Consensus 319 ~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999876
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.7e-72 Score=626.77 Aligned_cols=322 Identities=40% Similarity=0.631 Sum_probs=293.9
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcC
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNG 100 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G 100 (1104)
++|+|+||+||+++.|...+....+... +..+|.+.++.......++.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 5799999999999998877666655543 345566665543334557899999999999999999999999999999999
Q ss_pred CCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC-CCceee
Q 001305 101 INSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS-TPLRLL 170 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s-~~L~i~ 170 (1104)
+|+||||||||||||||||+ ||+|+++++||+.+....+..|.|+|||+|||||+|+|||++.. .++.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 99999999999999999996 69999999999999888888999999999999999999999876 589999
Q ss_pred eCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEe
Q 001305 171 DDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250 (1104)
Q Consensus 171 ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVD 250 (1104)
+++.++++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|++..... .+......|+|+|||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~L~~VD 238 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE--DGENHIRVGKLNLVD 238 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC--CCCCcEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999998875532 234456789999999
Q ss_pred cCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChH
Q 001305 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVE 330 (1104)
Q Consensus 251 LAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~e 330 (1104)
||||||..+++..|.+++|++.||+||.+|++||.+|+.++..|||||+||||+||+++|||||+|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999887779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 001305 331 QSRNTLLFASCAKEV 345 (1104)
Q Consensus 331 ETLsTLrFAsrAK~I 345 (1104)
||++||+||+|||.|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999976
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.9e-72 Score=623.20 Aligned_cols=311 Identities=36% Similarity=0.566 Sum_probs=284.1
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCc--c--CCCCCCccccCeecCCCCChHHHHHHHHHHHHHHH
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLL--E--RSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~--e--~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~sv 97 (1104)
.+|+|+|||||+.+.|...++...+.+.+++++.+..+.. . ....++.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 3799999999999999877777777777766777764321 1 11125789999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCCCCceeee
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDSTPLRLLD 171 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~e 171 (1104)
++|+|+||||||||||||||||+ ||+|+++++||+.+.... ..|.|++||+|||||+|+|||++ ..++.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999998 999999999999997765 68999999999999999999987 56799999
Q ss_pred CCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEec
Q 001305 172 DPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDL 251 (1104)
Q Consensus 172 d~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDL 251 (1104)
++.++++|.|++++.|.+++|++.+|..|.++|+++.|.+|..|||||+||+|+|.+... ....|+|+||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--------~~~~s~l~~vDL 230 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL--------NKLLGKLSFIDL 230 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--------CeeEEEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999987643 347899999999
Q ss_pred CCCccccccc-cccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChH
Q 001305 252 AGSERASQTL-NAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVE 330 (1104)
Q Consensus 252 AGSER~~kt~-s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~e 330 (1104)
|||||...+. ..+.+++|+++||+||++|++||.+|+.+ ..||||||||||+|||++|||||+|+|||||||+..+++
T Consensus 231 AGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~-~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~ 309 (322)
T cd01367 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASN-KAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCE 309 (322)
T ss_pred CCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcC-CCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHH
Confidence 9999998765 46789999999999999999999999986 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001305 331 QSRNTLLFASCAK 343 (1104)
Q Consensus 331 ETLsTLrFAsrAK 343 (1104)
||++||+||+|+|
T Consensus 310 eTl~tL~fa~r~k 322 (322)
T cd01367 310 HTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.6e-71 Score=627.01 Aligned_cols=327 Identities=39% Similarity=0.605 Sum_probs=296.8
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecC-ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcC
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINN-NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNG 100 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~-~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G 100 (1104)
.+|+|+||+||+...|...+....+.+.++ ++|.+.+... .....+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999977666777777765 5666655422 22346789999999999999999999999999999999
Q ss_pred CCcceeeeccCCCCCCcccC-----------------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCC
Q 001305 101 INSTFFAYGQTSSGKTYTMG-----------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTD 163 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~-----------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~ 163 (1104)
+|+||||||||||||||||+ ||+|+++.+||+.+... ...|.|++||+|||||+|+|||++.
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 99999999999999999994 68999999999999776 5689999999999999999999987
Q ss_pred ---CCCceeeeC--CCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 164 ---STPLRLLDD--PEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 164 ---s~~L~i~ed--~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
..+++++++ ..+|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .+.
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~--~~~ 237 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI--SGE 237 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC--CCC
Confidence 468999999 5899999999999999999999999999999999999999999999999999998765431 233
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeE
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAI 318 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~m 318 (1104)
.....|+|+||||||+|+..+.++.+.+++|++.||+||++|++||.+|+.+ ..|||||+||||+||+++|||||+|+|
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~-~~~vpyR~S~LT~lL~~~Lgg~s~t~~ 316 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEK-SPHIPYRESKLTRLLQDSLGGRTKTSI 316 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcC-CCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 4456899999999999999999999999999999999999999999999875 579999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHhhccccccccc
Q 001305 319 ICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1104)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1104)
|+||||+..+++||++||+||++|++|+|.|.+|.
T Consensus 317 I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 317 IATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999885
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.6e-71 Score=617.04 Aligned_cols=314 Identities=57% Similarity=0.836 Sum_probs=292.0
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCC
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN 102 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~N 102 (1104)
+|+|+||+||+...|.. ++.+.|.+.++.+|.+.++ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 59999999999998874 5677888888878777654 23579999999999999999999999999999999999
Q ss_pred cceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCCCCceeeeCCCCC
Q 001305 103 STFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKG 176 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~ed~~~g 176 (1104)
+||||||||||||||||+ ||+|+++++||..+....+..|.|++||+|||||+|+|||++...++.+++++.+|
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~ 154 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKG 154 (321)
T ss_pred eeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCC
Confidence 999999999999999998 89999999999999888888999999999999999999999998899999999999
Q ss_pred eEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecCCCcc
Q 001305 177 TVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLAGSER 256 (1104)
Q Consensus 177 v~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER 256 (1104)
+++.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|.+..... ........|+|+|||||||||
T Consensus 155 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 155 VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--SESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCCc
Confidence 999999999999999999999999999999999999999999999999999865431 123456789999999999999
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHhcCCC-CcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHH
Q 001305 257 ASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR-NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNT 335 (1104)
Q Consensus 257 ~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk-~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsT 335 (1104)
..+.+ .+.+++|+.+||+||++|++||.+|+.+. ..|||||+||||+||+++||||++|+|||||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 89999999999999999999999999865 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 001305 336 LLFASCAKEV 345 (1104)
Q Consensus 336 LrFAsrAK~I 345 (1104)
|+||+||++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999976
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=9.1e-71 Score=614.44 Aligned_cols=314 Identities=41% Similarity=0.608 Sum_probs=292.6
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCC
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGI 101 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~ 101 (1104)
++|+|+|||||+++.|..+++...+.+.++++|.+.+. ...+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 58999999999999998777788888888888887654 2356999999999999999999999999999999999
Q ss_pred CcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCCCCceeee
Q 001305 102 NSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPLRLLD 171 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~e 171 (1104)
|+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||.|+|||++....+.+++
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 9999999999999999994 799999999999997654 457999999999999999999999888999999
Q ss_pred CCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEec
Q 001305 172 DPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDL 251 (1104)
Q Consensus 172 d~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDL 251 (1104)
++.+|++|.|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+||||
T Consensus 157 ~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~-----~~~~~~s~l~~VDL 231 (325)
T cd01369 157 DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE-----TGSKKRGKLFLVDL 231 (325)
T ss_pred cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC-----CCCEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999876432 23467899999999
Q ss_pred CCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHH
Q 001305 252 AGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQ 331 (1104)
Q Consensus 252 AGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eE 331 (1104)
||||+..+.+..|.+++|++.||+||++|++||.+|+.++..||||||||||+||+++|||||+|+||+||||+..+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999998776899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 001305 332 SRNTLLFASCAKEV 345 (1104)
Q Consensus 332 TLsTLrFAsrAK~I 345 (1104)
|++||+||+|||.|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999976
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.2e-70 Score=609.34 Aligned_cols=308 Identities=35% Similarity=0.551 Sum_probs=280.4
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecC-----ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHH
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINN-----NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~-----~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~sv 97 (1104)
+|+|+|||||+.+.|. +....+...+. .++.+.++. ....++.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~--~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 76 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPR--NRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHL 76 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCC--CCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 5899999999998884 34455555444 356555442 12336799999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCCCCceeee
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDSTPLRLLD 171 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~e 171 (1104)
++|+|+||||||||||||||||+ ||+|+++++||+.+.... ..|.|++||+|||||.|+|||++....+.+++
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 155 (319)
T cd01376 77 LSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIRE 155 (319)
T ss_pred hCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEE
Confidence 99999999999999999999996 899999999999886554 67999999999999999999999888899999
Q ss_pred CCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEec
Q 001305 172 DPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDL 251 (1104)
Q Consensus 172 d~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDL 251 (1104)
++.++++|.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.... ....|+|+||||
T Consensus 156 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-------~~~~s~l~~VDL 228 (319)
T cd01376 156 DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-------IQLEGKLNLIDL 228 (319)
T ss_pred cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-------ceEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999876432 257899999999
Q ss_pred CCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHH
Q 001305 252 AGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQ 331 (1104)
Q Consensus 252 AGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eE 331 (1104)
|||||..+++..|.+++|+.+||+||++|++||.+|+.+ ..|||||+||||+||+++|||||+|+|||||||...+++|
T Consensus 229 AGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~-~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 229 AGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKG-LPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcC-CCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999999875 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 001305 332 SRNTLLFASCAK 343 (1104)
Q Consensus 332 TLsTLrFAsrAK 343 (1104)
|++||+||+|||
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.7e-70 Score=612.91 Aligned_cols=316 Identities=41% Similarity=0.624 Sum_probs=286.8
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecC-ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCC
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINN-NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGI 101 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~-~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~ 101 (1104)
+|+|+||+||+...|...+....+.+... ..+++.+ ++.|.||+||+++++|++||+.++.|+|+++++|+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999876665555555443 3444332 46899999999999999999999999999999999
Q ss_pred CcceeeeccCCCCCCcccC------------CChHhHHHHHHHHhhhccc-ceEEEEeeEEEEecccccccCCCC---CC
Q 001305 102 NSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTHQE-REFVLKFSAMEIYNESVRDLLSTD---ST 165 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLLs~~---s~ 165 (1104)
|+||||||||||||||||+ ||+|+++++||+.+..... ..|.|.|||+|||||+|+|||++. ..
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 9999999999999999995 5999999999999987765 789999999999999999999987 46
Q ss_pred CceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeeccccc-----CCCCce
Q 001305 166 PLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYL-----GAGNSS 240 (1104)
Q Consensus 166 ~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~-----~~~~~~ 240 (1104)
.+.+++++.++++|.|++++.|.++++++.+|..|.++|..+.|.+|..|||||+||+|+|.+...... ......
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999998765311 113445
Q ss_pred eEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CcccCCCCchhhHHhhhccCCCceeeE
Q 001305 241 ILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNARTAI 318 (1104)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT~m 318 (1104)
...|+|+||||||+|+..++.+.|.+++|+..||+||++|++||++|+.+. ..|||||+||||+||+++||||++|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 789999999999999999999999999999999999999999999998765 379999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHhhcc
Q 001305 319 ICTMSPARSHVEQSRNTLLFASCAKEVA 346 (1104)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ik 346 (1104)
|+||||...+++||++||+||++||+|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999985
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.4e-69 Score=606.01 Aligned_cols=312 Identities=38% Similarity=0.552 Sum_probs=277.5
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCc------cCCCCCCccccCeecCCCCChHHHHHHHHHHHHH
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLL------ERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTL 95 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~------e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~ 95 (1104)
+|+|+||+||+...+. ..+.... +..+.+..+.. ........|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 5899999999987432 1222333 23333322110 11123467999999999 9999999999999999
Q ss_pred HHhcCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC--
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS-- 164 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s-- 164 (1104)
++++|+|+||||||||||||||||+ ||+|+++++||+.++...+..|.|++||+|||||+|+|||++..
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 9999999999999999999999995 69999999999999988888999999999999999999999874
Q ss_pred ----CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCce
Q 001305 165 ----TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240 (1104)
Q Consensus 165 ----~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~ 240 (1104)
..+.+++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... .....
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~---~~~~~ 231 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE---AGSEV 231 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecC---CCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999987543 23345
Q ss_pred eEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEE
Q 001305 241 ILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIIC 320 (1104)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~ 320 (1104)
...++|+|||||||||..+++..+..++|+++||+||++|++||.+|+.+...||||||||||+||+++|||||+|+|||
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred eEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 68899999999999999999999999999999999999999999999987658999999999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHh
Q 001305 321 TMSPARSHVEQSRNTLLFASCAK 343 (1104)
Q Consensus 321 tISPs~~~~eETLsTLrFAsrAK 343 (1104)
||||+..+++||++||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=6.9e-68 Score=591.88 Aligned_cols=315 Identities=37% Similarity=0.572 Sum_probs=287.4
Q ss_pred CCEEEEEEeCCCChhhhhcCCCcceEEecC--ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhc
Q 001305 22 ERILVFVRLRPLNEKEYARNDVSDWECINN--NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN 99 (1104)
Q Consensus 22 erIrV~VRVRPl~~~E~~~~~~~~~~~i~~--~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~ 99 (1104)
++|+|+||+||+...|. ......+.+.+. .+|.+.+. ....+.|.||+||+++++|++||+.+ .|+|+++++
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~ 75 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALD 75 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhC
Confidence 68999999999998876 334455666665 66666543 23356899999999999999999985 899999999
Q ss_pred CCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCCC---CCCce
Q 001305 100 GINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTD---STPLR 168 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~---s~~L~ 168 (1104)
|+|+||||||+|||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++. ..++.
T Consensus 76 G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~ 155 (329)
T cd01366 76 GYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLE 155 (329)
T ss_pred CCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceE
Confidence 999999999999999999996 589999999999998765 4789999999999999999999987 67899
Q ss_pred eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001305 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1104)
Q Consensus 169 i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1104)
+++++.+++++.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 156 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-----~~~~~~s~l~~ 230 (329)
T cd01366 156 IKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-----TGEQTRGKLNL 230 (329)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----CCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999886543 33467899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCC
Q 001305 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1104)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1104)
|||||+|+..+.+..+.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+++|||+++|+|||||||...+
T Consensus 231 VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~ 309 (329)
T cd01366 231 VDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESN 309 (329)
T ss_pred EECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhh
Confidence 999999999999999999999999999999999999999886 6799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccc
Q 001305 329 VEQSRNTLLFASCAKEVATN 348 (1104)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~ 348 (1104)
++||++||+||++|++|++.
T Consensus 310 ~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 310 LSETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999863
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.8e-67 Score=587.61 Aligned_cols=325 Identities=43% Similarity=0.664 Sum_probs=298.6
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCc--eEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcC
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNN--SIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNG 100 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~--tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G 100 (1104)
+|+|+|||||+...|...+....|.+.+.. +|.+.... ....++.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 689999999999998877777777776653 56655432 22446799999999999999999999999999999999
Q ss_pred CCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCCCCceeeeCC
Q 001305 101 INSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDP 173 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~ed~ 173 (1104)
+|+||||||+|||||||||+ ||+|+++++||+.+.... ...|.|++||+|||+|+|+|||++...++.+++++
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~ 158 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDK 158 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECC
Confidence 99999999999999999998 899999999999997655 56899999999999999999999999999999999
Q ss_pred CCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecCC
Q 001305 174 EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLAG 253 (1104)
Q Consensus 174 ~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAG 253 (1104)
.+++++.|++++.|.+++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.... ........++|+||||||
T Consensus 159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLaG 235 (335)
T smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN---SSSGSGKASKLNLVDLAG 235 (335)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC---CCCCCEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999976332 234457899999999999
Q ss_pred CccccccccccccccccccchhhHHHHHHHHHHhcCC-CCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHH
Q 001305 254 SERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-RNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQS 332 (1104)
Q Consensus 254 SER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eET 332 (1104)
+|+..+.++.|.+++|+..||+||.+|++||.+|+.+ +..|||||+||||+||+++|||+++|+||+||||...+++||
T Consensus 236 se~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eT 315 (335)
T smart00129 236 SERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEET 315 (335)
T ss_pred CCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHH
Confidence 9999999999999999999999999999999999985 577999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccc
Q 001305 333 RNTLLFASCAKEVATNAQVN 352 (1104)
Q Consensus 333 LsTLrFAsrAK~Ikn~p~vN 352 (1104)
++||+||+++++|+++|++|
T Consensus 316 l~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 316 LSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999875
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.7e-66 Score=577.37 Aligned_cols=317 Identities=45% Similarity=0.669 Sum_probs=289.7
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCC
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN 102 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~N 102 (1104)
+|+|+||+||+...| ..+....+.+.++++|.+.++.......++.|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 599999999998877 2345566666666888887654334445689999999999999999999999999999999999
Q ss_pred cceeeeccCCCCCCcccCC------ChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCCC--CCCceeeeC
Q 001305 103 STFFAYGQTSSGKTYTMGG------ITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTD--STPLRLLDD 172 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G------Ii~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~--s~~L~i~ed 172 (1104)
+||||||+|||||||||+| |+|+++++||+.+.... ...|.|++||+|||+|+|+|||++. ..++.++++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 9999999999999999986 99999999999998776 5789999999999999999999998 889999999
Q ss_pred CCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecC
Q 001305 173 PEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLA 252 (1104)
Q Consensus 173 ~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLA 252 (1104)
+.+++++.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+..... .......|+|+|||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~~~s~l~~VDLa 236 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTN---DGRSIKSSKLNLVDLA 236 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCC---CCccEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999875532 1113689999999999
Q ss_pred CCccccccccccccccccccchhhHHHHHHHHHHhcCCC-CcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHH
Q 001305 253 GSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR-NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQ 331 (1104)
Q Consensus 253 GSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk-~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eE 331 (1104)
|+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. ..|||||+||||+|||++|||+++|+|||||+|...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999988999999999999999999999999999865 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 001305 332 SRNTLLFASCAK 343 (1104)
Q Consensus 332 TLsTLrFAsrAK 343 (1104)
|++||+||+|||
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 24
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-67 Score=630.90 Aligned_cols=323 Identities=37% Similarity=0.545 Sum_probs=288.6
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecC-ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhc
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECINN-NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN 99 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~-~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~ 99 (1104)
.|+|+|||||||+.+.+... ....+...+. ..+.+..+....+..+..|.||+||+|.++|++||.++ .|+|.++|+
T Consensus 313 kGnIRV~CRvRP~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lD 390 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQR-LQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALD 390 (670)
T ss_pred hcCceEEEEecCCCcccccc-ccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHhc
Confidence 57999999999999888754 2233333333 23555544444444455799999999999999999997 999999999
Q ss_pred CCCcceeeeccCCCCCCcccC-------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCC--CCcee
Q 001305 100 GINSTFFAYGQTSSGKTYTMG-------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDS--TPLRL 169 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~-------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s--~~L~i 169 (1104)
|||+||||||||||||||||. ||+||++..||..+.... .+.|.+.++|+|||||.|+|||++.. ..+.|
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I 470 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEI 470 (670)
T ss_pred CcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeE
Confidence 999999999999999999996 599999999999887654 58999999999999999999999874 67999
Q ss_pred eeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEE
Q 001305 170 LDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFV 249 (1104)
Q Consensus 170 ~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fV 249 (1104)
+++++++.+|.+++.+.|.+.+++..++..|..+|.+++|.+|.+|||||+||+|+|.... ........+.|+||
T Consensus 471 ~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~-----~~t~~~~~g~l~LV 545 (670)
T KOG0239|consen 471 VDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN-----ELTGIRVTGVLNLV 545 (670)
T ss_pred EEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc-----cCcccccccceeEe
Confidence 9999999999999999999999999999999999999999999999999999999997652 23445678999999
Q ss_pred ecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCCh
Q 001305 250 DLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329 (1104)
Q Consensus 250 DLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~ 329 (1104)
|||||||+++++..|.|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||+++|+|+++|||...++
T Consensus 546 DLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~ 624 (670)
T KOG0239|consen 546 DLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAAL 624 (670)
T ss_pred ecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHH
Confidence 9999999999999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q 001305 330 EQSRNTLLFASCAKEVATNAQV 351 (1104)
Q Consensus 330 eETLsTLrFAsrAK~Ikn~p~v 351 (1104)
.||+++|+||+|++.+...+-.
T Consensus 625 ~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 625 FETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhhhccchHHHhhceeccccc
Confidence 9999999999999999877654
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.9e-66 Score=578.68 Aligned_cols=316 Identities=42% Similarity=0.637 Sum_probs=276.9
Q ss_pred EeCCCChhhhhcCCCcceEEecCceE-EecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceee
Q 001305 29 RLRPLNEKEYARNDVSDWECINNNSI-VFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFA 107 (1104)
Q Consensus 29 RVRPl~~~E~~~~~~~~~~~i~~~tI-v~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfA 107 (1104)
||||++..|...+....+.+.+.... ...............|.||+||+++++|++||+.++.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 99999999998888777766532111 11111112223356899999999999999999999999999999999999999
Q ss_pred eccCCCCCCcccCC--------ChHhHHHHHHHHhhhccc---ceEEEEeeEEEEecccccccCCCC----CCCceeeeC
Q 001305 108 YGQTSSGKTYTMGG--------ITEYAIQDIYDYIDTHQE---REFVLKFSAMEIYNESVRDLLSTD----STPLRLLDD 172 (1104)
Q Consensus 108 YGQTGSGKTyTM~G--------Ii~rai~dLF~~I~~~~~---~~f~V~vS~lEIYNE~V~DLLs~~----s~~L~i~ed 172 (1104)
||+|||||||||+| |+|+++++||..+..... ..|.|+|||+|||||+|+|||++. ..++.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 99999999999986 799999999999988765 489999999999999999999988 357999999
Q ss_pred CCCC-eEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEec
Q 001305 173 PEKG-TVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDL 251 (1104)
Q Consensus 173 ~~~g-v~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDL 251 (1104)
+..| ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+......... .....|+|+||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDL 239 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDL 239 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc-cceeecceeeeec
Confidence 9987 9999999999999999999999999999999999999999999999999998765421111 2368999999999
Q ss_pred CCCccccccccc-cccccccccchhhHHHHHHHHHHhcCC-CCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCCh
Q 001305 252 AGSERASQTLNA-GARLKEGSHINRSLLTLGTVIRKLSKG-RNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329 (1104)
Q Consensus 252 AGSER~~kt~s~-G~rlkEg~~INkSLlaLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~ 329 (1104)
||+|+..+..+. +.+++|++.||+||.+|++||.+|+.+ ...|||||+||||+||+|+|||||+|+||+||+|...++
T Consensus 240 aGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~ 319 (335)
T PF00225_consen 240 AGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDY 319 (335)
T ss_dssp EESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGH
T ss_pred ccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccH
Confidence 999999988764 778999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 001305 330 EQSRNTLLFASCAKEV 345 (1104)
Q Consensus 330 eETLsTLrFAsrAK~I 345 (1104)
+||++||+||+++|+|
T Consensus 320 ~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 320 EETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999986
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-65 Score=578.17 Aligned_cols=323 Identities=35% Similarity=0.547 Sum_probs=289.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCC----ccCCCCCCccccCeecCCCCChHHHHHHHHHHH
Q 001305 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL----LERSVYPPAYTFDRVFGCECPTRQVYEEAAKEV 93 (1104)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~----~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~pl 93 (1104)
...+++|.|+||-||++.+|....+...+.+...+.+++..+- .-+......|.||++|+..++++.||..+++||
T Consensus 204 ~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~Pl 283 (676)
T KOG0246|consen 204 GVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPL 283 (676)
T ss_pred CCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHH
Confidence 3568899999999999999999888888888788888776532 122334678999999999999999999999999
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccC------------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEeccccccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDL 159 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DL 159 (1104)
|..+|+|.-+|+||||||||||||||. ||.-.+.+|+|..+.... ...+.|++||||||+.+||||
T Consensus 284 V~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDL 363 (676)
T KOG0246|consen 284 VKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDL 363 (676)
T ss_pred HHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhh
Confidence 999999999999999999999999994 677789999999887643 457899999999999999999
Q ss_pred CCCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCc
Q 001305 160 LSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239 (1104)
Q Consensus 160 Ls~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~ 239 (1104)
|+. ...|++++|.+..+.|.||++..|.+.+++++||..|++.|+.+.|..|..|||||+||+|.+... ..
T Consensus 364 L~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~--------~~ 434 (676)
T KOG0246|consen 364 LND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH--------GE 434 (676)
T ss_pred hcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC--------Cc
Confidence 986 677999999999999999999999999999999999999999999999999999999999999643 22
Q ss_pred eeEEEeEEEEecCCCccccccccc-cccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCC-Cceee
Q 001305 240 SILSASVNFVDLAGSERASQTLNA-GARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGG-NARTA 317 (1104)
Q Consensus 240 ~~~~SkL~fVDLAGSER~~kt~s~-G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGG-NSkT~ 317 (1104)
..+.|++.||||||+||...+... .....||+.||+||+||..||+||.++ +.|+|||.||||.+|+|+|=| |++|+
T Consensus 435 ~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n-k~H~PFR~SKLTqVLRDSFIGenSrTc 513 (676)
T KOG0246|consen 435 FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-KSHLPFRGSKLTQVLRDSFIGENSRTC 513 (676)
T ss_pred ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC-CCCCCchhhhHHHHHHHhhcCCCCceE
Confidence 468999999999999999877654 446679999999999999999999875 679999999999999999977 99999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHhhcccccc
Q 001305 318 IICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1104)
Q Consensus 318 mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1104)
||+||||....++.|||||+||.|+|+......
T Consensus 514 MIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 514 MIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999765443
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-61 Score=562.41 Aligned_cols=327 Identities=32% Similarity=0.524 Sum_probs=290.5
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCc-------cCCCCCCccccCeecCCCCChHHHHHHHHHH
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLL-------ERSVYPPAYTFDRVFGCECPTRQVYEEAAKE 92 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~-------e~s~~~~sF~FD~VF~~~asQeeVYe~vv~p 92 (1104)
-...|.|+||+||+.. ..++.+++.+++..+|+...+.. ..+...+.|.|.+||+|.++|.+||+.++.|
T Consensus 29 ~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 3467999999999985 33567788999999999874321 1223356899999999999999999999999
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhc-----------------------------
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH----------------------------- 137 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~----------------------------- 137 (1104)
+|.+++.|.|..||+||.|||||||||+ ||+||+++-||..|...
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999996 79999999999866420
Q ss_pred ------------------------------------ccceEEEEeeEEEEecccccccCCCCCC-----C-ceeeeCCCC
Q 001305 138 ------------------------------------QEREFVLKFSAMEIYNESVRDLLSTDST-----P-LRLLDDPEK 175 (1104)
Q Consensus 138 ------------------------------------~~~~f~V~vS~lEIYNE~V~DLLs~~s~-----~-L~i~ed~~~ 175 (1104)
.+..|.|+|||+|||||.|||||.+.+. . ..+++|.++
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~ 265 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNG 265 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCC
Confidence 1125889999999999999999986542 2 567889999
Q ss_pred CeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecCCCc
Q 001305 176 GTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLAGSE 255 (1104)
Q Consensus 176 gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSE 255 (1104)
..||.|++++.|.+.+|+++||..|.++|++++|.+|..|||||+||+|.|.+.... .+...+..|.|.||||||||
T Consensus 266 ~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~---~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 266 NMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS---QDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred CeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc---cccCceeEEeeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999887654 24556889999999999999
Q ss_pred cccccccccccccccccchhhHHHHHHHHHHhcCC----CCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHH
Q 001305 256 RASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG----RNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQ 331 (1104)
Q Consensus 256 R~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g----k~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eE 331 (1104)
|..++.+.|.|++||++||+||++||+||.+|..+ .+.+|||||||||++++.+|.|..+.+||+||+|...+|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 99999999999999999999999999999999753 34689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccc
Q 001305 332 SRNTLLFASCAKEVATNAQVN 352 (1104)
Q Consensus 332 TLsTLrFAsrAK~Ikn~p~vN 352 (1104)
+++.|+||.-|+.|.....++
T Consensus 423 nl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHhcccccccCccc
Confidence 999999999999998766553
No 28
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-62 Score=585.05 Aligned_cols=336 Identities=35% Similarity=0.538 Sum_probs=299.9
Q ss_pred eCCCChhhhhcCCCcceEEe-cCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeee
Q 001305 30 LRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAY 108 (1104)
Q Consensus 30 VRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAY 108 (1104)
|||+...|..++...++.+. ....|.+.. ...|+||+||....+|.++|+.++.|+++.++.|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~--------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK--------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC--------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 69999999877755544422 223333322 368999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccC----------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC--CCceeeeCCCCC
Q 001305 109 GQTSSGKTYTMG----------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS--TPLRLLDDPEKG 176 (1104)
Q Consensus 109 GQTGSGKTyTM~----------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s--~~L~i~ed~~~g 176 (1104)
|||||||||||. |++|+++..+|..+.......|.|.|||+|||++.|+|||.+.. .++.+.+ +.++
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGE 151 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCc
Confidence 999999999993 99999999999999988878899999999999999999998544 3577777 7788
Q ss_pred eEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecCCCcc
Q 001305 177 TVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLAGSER 256 (1104)
Q Consensus 177 v~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER 256 (1104)
+.+.|+++..|.+..++...|..|...|++++|+||..|||||+||+|++++.... .....++++|+|||||||||
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~----~~~s~~~sKlhlVDLAGSER 227 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKL----SKRSSFCSKLHLVDLAGSER 227 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHh----hccchhhhhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999875432 23346789999999999999
Q ss_pred ccccccccccccccccchhhHHHHHHHHHHhcCC-CCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHH
Q 001305 257 ASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-RNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNT 335 (1104)
Q Consensus 257 ~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-k~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsT 335 (1104)
.++++++|.|++||++||.+|++||+||.+|... +.+||||||||||||||++||||+.|+||+||||+..+++||++|
T Consensus 228 ~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnT 307 (913)
T KOG0244|consen 228 VKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNT 307 (913)
T ss_pred ccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHH
Confidence 9999999999999999999999999999999764 356999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhc
Q 001305 336 LLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQ 379 (1104)
Q Consensus 336 LrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~ 379 (1104)
|+||.||++|+|+|.+|.. ...+.+..|+.+++.|+.+|....
T Consensus 308 l~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 308 LRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999983 345567789999999999887765
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-57 Score=534.81 Aligned_cols=282 Identities=44% Similarity=0.703 Sum_probs=264.9
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc-c
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-E 139 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~ 139 (1104)
...|.||+||++.++|++||+..++|++++++.||||||||||||||||||||. ||+|+++.+||+.++... +
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 457999999999999999999999999999999999999999999999999995 799999999999987654 4
Q ss_pred ceEEEEeeEEEEecccccccCCCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCce
Q 001305 140 REFVLKFSAMEIYNESVRDLLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSH 219 (1104)
Q Consensus 140 ~~f~V~vS~lEIYNE~V~DLLs~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSH 219 (1104)
..|.|.+||+|||||+++|||.+....+.++++...+++|.|+++..+.++++++.+|..|..+|+++.|.+|..|||||
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRsh 214 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSH 214 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccce
Confidence 67999999999999999999998887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeecccccCCCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC-CCCcccCCC
Q 001305 220 QILRLTIESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK-GRNAHIPYR 298 (1104)
Q Consensus 220 aIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~-gk~~hIPYR 298 (1104)
+||++++.+..+.. .....++|+||||||||++..++..+.+++|+..||+||++||+||.+|.. .+..|||||
T Consensus 215 si~~i~~~~~~~~~-----~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyR 289 (568)
T COG5059 215 SIFQIELASKNKVS-----GTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYR 289 (568)
T ss_pred EEEEEEEEEeccCc-----cceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchh
Confidence 99999999876542 122337899999999999999999999999999999999999999999985 356799999
Q ss_pred CchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhccccccccc
Q 001305 299 DSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1104)
Q Consensus 299 DSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1104)
+|||||+||++|||+++|++||||+|...++++|.+||+||++|+.|++.+..|.
T Consensus 290 eskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 290 ESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999995
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=8.8e-46 Score=383.75 Aligned_cols=173 Identities=44% Similarity=0.699 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccc
Q 001305 85 VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRD 158 (1104)
Q Consensus 85 VYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~D 158 (1104)
||+.++ |+|+.+++|+|+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999998 888888877
Q ss_pred cCCCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 159 LLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 159 LLs~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
++.++..|.++|+.+.|.+|..|||||+||+|+|.+..... .+.
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~--~~~ 101 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA--SAT 101 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC--CCc
Confidence 88999999999999999999999999999999998876542 223
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeE
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAI 318 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~m 318 (1104)
.....++|+||||||||+..+++..+.+++|++.||+||.+|++||.+|+.+ ..||||||||||+||||+|||||+|+|
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~ 180 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLM 180 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEE
Confidence 4567899999999999999999999999999999999999999999999875 579999999999999999999999999
Q ss_pred EEecCC
Q 001305 319 ICTMSP 324 (1104)
Q Consensus 319 I~tISP 324 (1104)
|+||||
T Consensus 181 i~~vsP 186 (186)
T cd01363 181 VACISP 186 (186)
T ss_pred EEEeCc
Confidence 999998
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.62 E-value=4.3e-07 Score=110.20 Aligned_cols=253 Identities=23% Similarity=0.221 Sum_probs=144.9
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCC---CcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARND---VSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTL 95 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~---~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~ 95 (1104)
|+..+++|+|+|+|.......-.. ...-.....+++..... .........|.||.+|.+...+..++... ...++
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~ 379 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLSQ 379 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhh
Confidence 344599999999998743211000 00000111223332211 11111234689999999998888888765 55666
Q ss_pred HHhcCCCcceeeeccCCCCCCcccC----CChHhHHHHHHHHhhhccc--ceEEEEeeEEEEecccccccCCCCC-CCce
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQE--REFVLKFSAMEIYNESVRDLLSTDS-TPLR 168 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~~--~~f~V~vS~lEIYNE~V~DLLs~~s-~~L~ 168 (1104)
..++| +++||++++|+++||. ++....+..+|..+..... ..+...+-++++|-....+++.... .+..
T Consensus 380 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 455 (568)
T COG5059 380 SSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKT 455 (568)
T ss_pred hhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Confidence 77777 9999999999999995 4555555666665544321 1222223334444222222221111 0000
Q ss_pred --eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeE
Q 001305 169 --LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASV 246 (1104)
Q Consensus 169 --i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL 246 (1104)
..........+..++.. .....+..... .+...+..+.+..|..++++|.+|+........- ..... +
T Consensus 456 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-----~~~~~---~ 525 (568)
T COG5059 456 KIHKLNKLRHDLSSLLSSI-PEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS-----TKELS---L 525 (568)
T ss_pred HHHHHHHHHHHHHHhhhhc-chhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh-----hHHHH---h
Confidence 00000000000011111 11111111111 4567788899999999999999998877432211 00111 7
Q ss_pred EEEecCCCccccccccccccccccccchhhHHHHHHHHHHhc
Q 001305 247 NFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLS 288 (1104)
Q Consensus 247 ~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs 288 (1104)
+.|||||+||. -...-|.++++...+|++|..+|.+|.++.
T Consensus 526 n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 526 NQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999999999 888889999999999999999999998763
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.033 Score=66.91 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=56.9
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHh-------------HHHHHHHHhh
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEY-------------AIQDIYDYID 135 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r-------------ai~dLF~~I~ 135 (1104)
.|..-.-|.|.-.|-+- ...++..+-.|.-. -...|.|||||||||..+|.. ....||..+.
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~-QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKH-QTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCcee-eEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46666678888777543 34455555555543 345699999999999765543 3566777665
Q ss_pred h-cccceEEEEeeEEEEeccccc
Q 001305 136 T-HQEREFVLKFSAMEIYNESVR 157 (1104)
Q Consensus 136 ~-~~~~~f~V~vS~lEIYNE~V~ 157 (1104)
. .++..+...|||+..|.-..|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 4 355677789999999965544
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.02 E-value=0.076 Score=57.58 Aligned_cols=52 Identities=31% Similarity=0.458 Sum_probs=31.3
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
..|+||..+.. ..++..|..+ ..++..--..+| .+|-||++|+||||-|.++
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~Ai 54 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQAI 54 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHHHH
Confidence 47999987653 3355666543 444443111233 4789999999999976543
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=91.91 E-value=0.12 Score=56.24 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChH
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
+..++||..++... .. .+..+....-.++|..++-||++|+||||.+.++..
T Consensus 10 ~~~~~fd~f~~~~~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 10 IDDETLDNFYADNN-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred CCcccccccccCCh-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999997552 21 122222333457788899999999999999866543
No 35
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.61 E-value=0.18 Score=57.46 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 89 AAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 89 vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
...+++..++.--++.|+..|+||||||+||.-+
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlAam 145 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLAAM 145 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHH
Confidence 3567888889999999999999999999998543
No 36
>PRK06620 hypothetical protein; Validated
Probab=87.52 E-value=0.36 Score=52.36 Aligned_cols=50 Identities=28% Similarity=0.376 Sum_probs=33.8
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCC---cceeeeccCCCCCCcccC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN---STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~N---atIfAYGQTGSGKTyTM~ 120 (1104)
...|+||..+...+ +...|..+. .+... . |+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 45789998776444 455676653 23321 1 444 358999999999999885
No 37
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.86 E-value=0.42 Score=59.35 Aligned_cols=54 Identities=31% Similarity=0.425 Sum_probs=36.2
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCCh
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1104)
...|+||..+.... +..+|. .+..++...-.++|. ||-||.+|+||||.+.+|.
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AIa 335 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAIG 335 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHHH
Confidence 45799998664343 444553 344555443346675 8999999999999986544
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.34 E-value=0.53 Score=51.53 Aligned_cols=51 Identities=8% Similarity=0.195 Sum_probs=34.0
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCCh
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1104)
+..|+||..+.. .+..++..+.. +. .......++-||++|+||||.+.++.
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~-~~---~~~~~~~l~l~Gp~G~GKThLl~a~~ 66 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQN-AL---RQEHSGYIYLWSREGAGRSHLLHAAC 66 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHH-HH---hCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 467899976654 45566655422 22 12233478999999999999986543
No 39
>PRK12377 putative replication protein; Provisional
Probab=85.61 E-value=0.56 Score=52.24 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=37.5
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHh
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
..+||........|..++.. +..++..+..+. ..|+-||++|+||||.+.+|.-.
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHH
Confidence 34777655545556656654 466676666554 46888999999999998765443
No 40
>PRK06526 transposase; Provisional
Probab=85.57 E-value=0.4 Score=53.47 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=29.4
Q ss_pred cCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChH
Q 001305 72 FDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 72 FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
||.-+.+.-+...+..-.....+. .+.| |+.||++|+||||.+.+|..
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHH
Confidence 443344555555554433333332 4444 78999999999999976543
No 41
>PRK09087 hypothetical protein; Validated
Probab=84.76 E-value=0.54 Score=51.38 Aligned_cols=48 Identities=25% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
+..|+||..+..++. ..+|..+ .....-.+..++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCch-HHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 457899988864444 4466633 22222235568999999999999986
No 42
>PRK05642 DNA replication initiation factor; Validated
Probab=84.14 E-value=0.79 Score=50.19 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhc---CC-CcceeeeccCCCCCCcccCCC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN---GI-NSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~---G~-NatIfAYGQTGSGKTyTM~GI 122 (1104)
+..|+||..+... +..+ ...+..... +. ...++-||.+|+||||-+.++
T Consensus 13 ~~~~tfdnF~~~~--~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 13 RDDATFANYYPGA--NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CCcccccccCcCC--hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHH
Confidence 4578999887432 2222 333333322 22 346889999999999987654
No 43
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.08 E-value=0.64 Score=55.70 Aligned_cols=52 Identities=31% Similarity=0.422 Sum_probs=34.6
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
...|+||..+.. ..+...|..+ ..++.. -..+|. +|-||++|+||||.|..+
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ai 150 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQSI 150 (440)
T ss_pred CCCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHHH
Confidence 467999987743 3455556543 334432 123665 999999999999988543
No 44
>PRK08727 hypothetical protein; Validated
Probab=83.87 E-value=0.68 Score=50.58 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCC-CcceeeeccCCCCCCcccCCCh
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGI-NSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~-NatIfAYGQTGSGKTyTM~GIi 123 (1104)
+..|+||..+..++ + ....+ ..+ ..|. .-.|+-||++|+||||.+..+.
T Consensus 13 ~~~~~f~~f~~~~~-n--~~~~~-~~~----~~~~~~~~l~l~G~~G~GKThL~~a~~ 62 (233)
T PRK08727 13 PSDQRFDSYIAAPD-G--LLAQL-QAL----AAGQSSDWLYLSGPAGTGKTHLALALC 62 (233)
T ss_pred CCcCChhhccCCcH-H--HHHHH-HHH----HhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 45789998775443 2 22221 111 1233 2459999999999999986544
No 45
>PRK08116 hypothetical protein; Validated
Probab=83.49 E-value=0.66 Score=52.02 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=35.0
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhc--CCCcceeeeccCCCCCCcccCCC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVN--GINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~--G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.++||... .+..+...|.. +...++.+.. +.+..++-||.+|+||||.+..|
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ai 134 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACI 134 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHH
Confidence 46788644 34455555554 4666665543 34556999999999999988653
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=1.7 Score=50.99 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHhHHHHHHHHhhhcccceEEEEeeEEEE
Q 001305 86 YEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTHQEREFVLKFSAMEI 151 (1104)
Q Consensus 86 Ye~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEI 151 (1104)
++.++.-+...+-.|....++.||.||+|||.|+ +.+++.+.........+++-|.++
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCceEEEeeeeC
Confidence 4444443443333444445999999999999875 555555554433332566655554
No 47
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.06 E-value=5.7 Score=43.39 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCCcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 355 MSDKALVKQLQKELARLENEMKNLQSTPKKCDF---TLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 355 ~sd~aLik~LqkEi~rLe~eL~~l~~~~~~~~~---~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
++....+.++++|++.|+.+|..+......... ..+...++++.+++++.++|+++...++.+++.|......
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999887754221110 1233344556666777777777777777666666555443
No 48
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.70 E-value=0.77 Score=53.99 Aligned_cols=54 Identities=30% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 66 YPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 66 ~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.+..|+||.... ...+...|.. +..++..--..+| .++-||++|+||||.+..+
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ai 156 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 156 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHHH
Confidence 356899998443 2344555543 3444433111234 4788999999999998543
No 49
>PRK07952 DNA replication protein DnaC; Validated
Probab=82.07 E-value=0.96 Score=50.31 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=34.8
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChH
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
..+||........|..++..+ ...++....|. ..++-||.+|+||||.+.+|.-
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHHHHH
Confidence 567776543344555566543 44555544443 3689999999999999876543
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.75 E-value=1.2 Score=47.33 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=33.6
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
+..|+||..... .+..+++..- .++ ..+....|+-||++|+||||.+..+
T Consensus 9 ~~~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 9 PDDPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCchhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHHHH
Confidence 456888877732 4455555442 222 2566778999999999999987543
No 51
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.74 E-value=0.63 Score=46.87 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=20.6
Q ss_pred HHHHHhcC-CCcceeeeccCCCCCCcccCCC
Q 001305 93 VTLSVVNG-INSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 93 lV~svL~G-~NatIfAYGQTGSGKTyTM~GI 122 (1104)
++..+-.+ ...-++..|+||||||++|..+
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~ 45 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALAL 45 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhhh
Confidence 33333343 3556677789999999999753
No 52
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.55 E-value=1.4 Score=50.61 Aligned_cols=46 Identities=33% Similarity=0.484 Sum_probs=27.9
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|..+.+.+ .++-++.+..-+ ..++ .+....++-||++|+|||+++
T Consensus 11 ~~~p~~l~g----Re~e~~~l~~~l-~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 11 DYVPDRIVH----RDEQIEELAKAL-RPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCC----cHHHHHHHHHHH-HHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444444444 334444443332 2333 455678999999999999975
No 53
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.55 E-value=1.4 Score=51.23 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 82 TRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 82 QeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-++-++.+...+-..+-.+....++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444554333333333455567899999999999975
No 54
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.26 E-value=0.93 Score=54.23 Aligned_cols=54 Identities=30% Similarity=0.365 Sum_probs=33.4
Q ss_pred CCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 66 YPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 66 ~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
....|+||..... ..+...|..+ ..+...--..+| .++-||++|+||||.+..+
T Consensus 115 l~~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 115 LNPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCCCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHHH
Confidence 3567899984432 3444455543 434433212344 4888999999999998654
No 55
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.12 E-value=1.1 Score=54.00 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=32.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.|+||..+... +++..|.. +..++..-=..+| .+|-||.+|+||||.|..+
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai 161 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKAA 161 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHHH
Confidence 58999866544 45556643 3444432111234 4899999999999998543
No 56
>PRK08181 transposase; Validated
Probab=79.55 E-value=1.4 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred cCCCcceeeeccCCCCCCcccCCChHhH
Q 001305 99 NGINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
.|.| |+-||++|+||||-+.++...+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHH
Confidence 5555 8999999999999987654433
No 57
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.02 E-value=1 Score=51.57 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=34.6
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcC-CCcceeeeccCCCCCCcccCCChHh
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNG-INSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G-~NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
.+||.+-.....+..++.. +...+.....| ..-.|+-||++|+||||.+.++.-.
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4555443333355566664 35566555443 3346999999999999998765433
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.60 E-value=1.4 Score=41.65 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=19.0
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434557889999999999865
No 59
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.44 E-value=0.96 Score=54.83 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
...+..++..-++.|+.-|+||||||.||..
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3445577888999999999999999999854
No 60
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.12 E-value=1.5 Score=52.31 Aligned_cols=51 Identities=33% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
...|+||...... ++.-.|..+ ..+. ..-.+.---||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~aa~-~~va-~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYAAA-KAVA-ENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCC-chHHHHHHH-HHHH-hccCCcCCcEEEECCCCCCHHHHHH
Confidence 5689999866544 344444432 2222 2222233458999999999999984
No 61
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.84 E-value=1.4 Score=51.10 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHhH
Q 001305 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
+...++.+-.+. -.|+-||++|+||||.+.+|...+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHH
Confidence 455666665444 569999999999999887654433
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.47 E-value=2.5 Score=45.46 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
+..|+||.+++.. . ..++.. +..++.. .+.+..++-||.+|+||||.+..+
T Consensus 12 ~~~~~~d~f~~~~-~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 12 PPPPTFDNFVAGE-N-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CChhhhcccccCC-c-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHHH
Confidence 4578999988432 2 233332 3333321 234567999999999999987543
No 63
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=74.33 E-value=2.8 Score=52.94 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=53.1
Q ss_pred cCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHh-------------HHHHHHHHhhhc-
Q 001305 72 FDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEY-------------AIQDIYDYIDTH- 137 (1104)
Q Consensus 72 FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r-------------ai~dLF~~I~~~- 137 (1104)
...=|.|.-.|..-+... +..+-+|...- ..+|.||||||+||..++.. .+..|+..+...
T Consensus 4 ~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~ 78 (655)
T TIGR00631 4 LHSPFQPAGDQPKAIAKL----VEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFF 78 (655)
T ss_pred eccCCCCChHHHHHHHHH----HHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhC
Confidence 334467778887777654 33444553222 37899999999999754432 345666655443
Q ss_pred ccceEEEEeeEEEEeccccc
Q 001305 138 QEREFVLKFSAMEIYNESVR 157 (1104)
Q Consensus 138 ~~~~f~V~vS~lEIYNE~V~ 157 (1104)
++..+...|||+..|.-..|
T Consensus 79 p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 79 PENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred CCCeEEEEeeecccCCcccc
Confidence 34457788999999976644
No 64
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.94 E-value=1 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.093 Sum_probs=15.3
Q ss_pred eeeeccCCCCCCcccCCC
Q 001305 105 FFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GI 122 (1104)
++.+|+||+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 578899999999998654
No 65
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.10 E-value=1.4 Score=55.63 Aligned_cols=46 Identities=35% Similarity=0.577 Sum_probs=26.3
Q ss_pred CCCCcccCC------ChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC
Q 001305 113 SGKTYTMGG------ITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS 164 (1104)
Q Consensus 113 SGKTyTM~G------Ii~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s 164 (1104)
+|++|++.+ +..+....+++....... . ..++.|++.+.|++..-.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 62 AGLTYTMEGSNQPGGLLARLFKELIDLANSDKT----S--NVVEAYNERLRDLLSELQ 113 (670)
T ss_pred hhhhhhhhhhcCcchhHHHhhhhcccccccCCC----c--hhHHHHHHHHhhhccccc
Confidence 899999963 333333333322111111 1 167889999999986543
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.36 E-value=5.7 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=18.3
Q ss_pred cCCCcceeeeccCCCCCCcccCC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.|-+.+||.||++|+|||.|+.-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHHH
Confidence 34456788999999999998743
No 67
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=71.26 E-value=8.5 Score=42.90 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=34.2
Q ss_pred EeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecCCCccc
Q 001305 186 TLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLAGSERA 257 (1104)
Q Consensus 186 ~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~ 257 (1104)
.+.+++++...+..+... ..+. ...-|.-+++|.|..... -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~------------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV------------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC------------CceEEEeCCCcccc
Confidence 446888888888765432 2111 123466688888865422 24889999999543
No 68
>PRK06921 hypothetical protein; Provisional
Probab=70.80 E-value=2.6 Score=47.35 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHHHHHHh---cCCCcceeeeccCCCCCCcccCCChH
Q 001305 90 AKEVTLSVV---NGINSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 90 v~plV~svL---~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
+...++.+- .+....|+-||++|+||||.+.+|.-
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~ 139 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAAN 139 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHH
Confidence 344555443 22345689999999999999866543
No 69
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=69.29 E-value=3.3 Score=46.29 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=35.5
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHhH
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
+.|.|..+-.....+..+|... ..++..+-+|. .++-||++|+||||-+.+|.-.+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~--nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGE--NLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCC--cEEEECCCCCcHHHHHHHHHHHH
Confidence 3455444444455667777775 44554554444 46789999999999987654333
No 70
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=69.07 E-value=1.4 Score=47.27 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=17.6
Q ss_pred eeeeccCCCCCCcccCCChHhHHH
Q 001305 105 FFAYGQTSSGKTYTMGGITEYAIQ 128 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~rai~ 128 (1104)
+..+|.||||||+|+.-++..++.
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~l~~ 49 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEELLK 49 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 446799999999998665554443
No 71
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.68 E-value=7.9 Score=46.12 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=37.0
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhc--C--CCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--G--INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G--~NatIfAYGQTGSGKTyTM 119 (1104)
...+|+.|-|.+..-+++-+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4578888888776666676666666553 3333 2 2456889999999999987
No 72
>PF12846 AAA_10: AAA-like domain
Probab=68.43 E-value=1.6 Score=47.75 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=17.1
Q ss_pred CcceeeeccCCCCCCcccCCC
Q 001305 102 NSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GI 122 (1104)
|.-++..|.||||||++|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l 21 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNL 21 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 456788999999999988543
No 73
>PRK10436 hypothetical protein; Provisional
Probab=68.42 E-value=2.4 Score=51.34 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=23.4
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.+..++..-++.|+..|+||||||.||..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 34456667788999999999999999843
No 74
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=68.07 E-value=2.2 Score=52.77 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.+..++..-++.|+..|+||||||+||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 34566677788999999999999999854
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=67.97 E-value=5 Score=47.42 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=33.0
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc--C--CCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--G--INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G--~NatIfAYGQTGSGKTyTM 119 (1104)
.+.||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 566777766555555666655555543 2222 2 2346899999999999886
No 76
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=67.75 E-value=2 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.1
Q ss_pred cceeeeccCCCCCCcccCCChHh
Q 001305 103 STFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~r 125 (1104)
-.|+-||++|+||||...++.-.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH
Confidence 45899999999999998765443
No 77
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=67.52 E-value=2.7 Score=51.27 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 34456677778899999999999999843
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.80 E-value=5.7 Score=46.24 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=32.9
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhc--CC--CcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~ 120 (1104)
..+.||.|.+-+..-+++.+.+..|+.. ..+. |. ...|+-||++|+|||+++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3567777777555555555555444432 1221 22 3458999999999998863
No 79
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.68 E-value=35 Score=31.56 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
|..|+.|+..|+.+...+. .....+..+...|+.++...+.+++.|+..+.+
T Consensus 20 i~~Lq~e~eeLke~n~~L~---------------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELK---------------EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4456666666666544332 446678888888999999999999999877653
No 80
>PF13245 AAA_19: Part of AAA domain
Probab=66.57 E-value=2.7 Score=38.58 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
|..++. -+..++..|+.|||||+|+..+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~~ 30 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAAR 30 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHHH
Confidence 344455 3334445899999999997543
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.56 E-value=35 Score=41.66 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~ 426 (1104)
+..|.++++.|+.|.+.++......+..+....+...+++.++.++|+.++..++..+++|.+.+.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666543333333333444444556677777777777777777777766553
No 82
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=66.42 E-value=2 Score=40.08 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.9
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
..++-+|++|+|||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999998754
No 83
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=65.69 E-value=2.1 Score=53.48 Aligned_cols=47 Identities=32% Similarity=0.568 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHhhhcCcceeeeeeeeeeecCCCCCcee--EEeeeeeeh
Q 001305 932 FERQRKEIIELWDACYVPLVHRTYFFLLFKGDPSDSVY--MEVELRRLS 978 (1104)
Q Consensus 932 F~~~~~~IIeLW~~C~VslvHRTyFfLLfkGd~~D~iY--mEVElRRLs 978 (1104)
.++.|.+|-+||+.|++|--.|..|--.|-.+.++.+- +|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 47899999999999999999999988888766666654 899998874
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=65.67 E-value=4.1 Score=49.16 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=34.3
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHH--hcC--CCcceeeeccCCCCCCcccCCCh
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSV--VNG--INSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~sv--L~G--~NatIfAYGQTGSGKTyTM~GIi 123 (1104)
...|+||...-. .++...|.. +..+.... ..| || .+|-||++|+||||.+..+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~Ai~ 162 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQAAV 162 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHHHH
Confidence 567999987653 344444543 45454332 223 34 47889999999999986543
No 85
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=65.10 E-value=1.8 Score=41.79 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=13.0
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999876
No 86
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=64.47 E-value=55 Score=42.18 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-||.-+....-.-+-.|.|-||+.-|.+|||||.|.-
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 109 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTK 109 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHH
Confidence 3665433332222347999999999999999999873
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=64.34 E-value=4.9 Score=46.43 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcC-CCcceeeeccCCCCCCccc
Q 001305 77 GCECPTRQVYEEAAKEVTLSVVNG-INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 77 ~~~asQeeVYe~vv~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1104)
.|.+--+-++++.+-.++...+.+ .---.+-||+.|+|||.|.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 344334455555555555555544 4455788999999999996
No 88
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=64.10 E-value=42 Score=42.83 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCccc
Q 001305 84 QVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 84 eVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1104)
-||.-+ ......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 466543 33334444 699999999999999999986
No 89
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=63.91 E-value=3.1 Score=41.67 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=19.7
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
++..+++|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3445566766 7788999999999864
No 90
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=63.85 E-value=3.2 Score=48.10 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.+..++.--.+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 34444443457789999999999999843
No 91
>PF14282 FlxA: FlxA-like protein
Probab=63.84 E-value=48 Score=32.57 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 357 DKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKS 416 (1104)
Q Consensus 357 d~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~ 416 (1104)
....|+.|++.|..|..+|..+.....- -.+++..+++.|..+|..|..++..++.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~----~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDL----DAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668899999999999999998864211 1234556666666666666555544433
No 92
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=63.58 E-value=2.4 Score=45.15 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.3
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
+.|+-.|+||||||+++.-
T Consensus 2 GlilI~GptGSGKTTll~~ 20 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5788899999999999843
No 93
>PRK09183 transposase/IS protein; Provisional
Probab=63.33 E-value=3.2 Score=46.35 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=27.6
Q ss_pred cCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 72 FDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 72 FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
||.=|.+..+...+..-..-. .+-.|.| |+-+|++|+||||.+.++
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~---~i~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLS---FIERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCC---chhcCCe--EEEEeCCCCCHHHHHHHH
Confidence 555566665554443321111 1234554 667999999999998655
No 94
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=63.12 E-value=3.7 Score=48.50 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.4
Q ss_pred CCcceeeeccCCCCCCcccCC
Q 001305 101 INSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~G 121 (1104)
.++.|+..|+||||||+||..
T Consensus 148 ~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 456788899999999999844
No 95
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=61.70 E-value=3.8 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.4
Q ss_pred hcCCCcceeeeccCCCCCCcccCC
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
+.--.+.|+..|+||||||.||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 333568899999999999999844
No 96
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=61.28 E-value=4.1 Score=45.71 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
+..++..-.+.|+-.|.||||||.||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 3455555566788889999999999854
No 97
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=61.21 E-value=15 Score=43.93 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=48.1
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhc--C--CCcceeeeccCCCCCCcccC-----------------------
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN--G--INSTFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~--G--~NatIfAYGQTGSGKTyTM~----------------------- 120 (1104)
..+.||.+.+.-.--..+.+.++-.++...+. | .--.|.-||+.|+|||+...
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 45677777766655666777777777777763 2 23357789999999999851
Q ss_pred CChHhHHHHHHHHhhh
Q 001305 121 GITEYAIQDIYDYIDT 136 (1104)
Q Consensus 121 GIi~rai~dLF~~I~~ 136 (1104)
|=..+.++.+|.....
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4455778888876543
No 98
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=60.76 E-value=6.1 Score=44.33 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=71.8
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCc-ceeeeccCCCCCCcccCCChHhHHHHHHHHhhhcccceEEEEe
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINS-TFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTHQEREFVLKF 146 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~Na-tIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~v 146 (1104)
....+|...+-+...+.+.+.+ ..++.|..+ -++.||..|+|||.++-+++. ...... +
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkall~--------~y~~~G-------L 81 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKALLN--------EYADQG-------L 81 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHHHH--------HHhhcC-------c
Confidence 4567777777766666666665 466777755 367799999999988744322 221111 4
Q ss_pred eEEEEeccccccc------CCCCCCCceeeeCCCCCeEecCceEEE-eCCHHHHHHHHHHHHhhccccccccCCCCCCce
Q 001305 147 SAMEIYNESVRDL------LSTDSTPLRLLDDPEKGTVVERLTEET-LTDMSHLMELLAVCEAQRQIGETALNETSSRSH 219 (1104)
Q Consensus 147 S~lEIYNE~V~DL------Ls~~s~~L~i~ed~~~gv~V~gLtev~-V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSH 219 (1104)
-.+||..+.+.|| |.......-+ ++.+|+-.. =.++..+..+|.-|...| ....-+..+|.|-|
T Consensus 82 RlIev~k~~L~~l~~l~~~l~~~~~kFIl--------f~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRH 152 (249)
T PF05673_consen 82 RLIEVSKEDLGDLPELLDLLRDRPYKFIL--------FCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRH 152 (249)
T ss_pred eEEEECHHHhccHHHHHHHHhcCCCCEEE--------EecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhh
Confidence 4577777665554 3222222221 233333111 123566667776665444 34455667777777
Q ss_pred EEE
Q 001305 220 QIL 222 (1104)
Q Consensus 220 aIf 222 (1104)
.|=
T Consensus 153 Lv~ 155 (249)
T PF05673_consen 153 LVP 155 (249)
T ss_pred ccc
Confidence 763
No 99
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=60.34 E-value=42 Score=35.27 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQS 424 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~ 424 (1104)
.-.++|++|+.+|+.|+...... .+++.=...+.++.+++++++++.+++...+..++.....
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~q---DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQ---DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TT---TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999877443 3455445567778888888888888887777777665543
No 100
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=60.33 E-value=50 Score=42.24 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-||.-+-...-.-+-.|.|.||+.-|.+|||||.|.-
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 3665443333222337999999999999999999863
No 101
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=60.29 E-value=2.5 Score=46.78 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.0
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 455677799999999997
No 102
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.99 E-value=5.6 Score=45.24 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
..+++..+.--.-+.|+..|.|||||+.||..
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAa 146 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAA 146 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHH
Confidence 45667777767778899999999999999953
No 103
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=59.77 E-value=50 Score=42.18 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-||.-+-...-.-+-.|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 466544332222223799999999999999999986
No 104
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=59.43 E-value=3.9 Score=42.79 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+...+-.|.+.+++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 33444444567889999999999999876
No 105
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=59.09 E-value=57 Score=39.00 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=33.7
Q ss_pred cccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCC
Q 001305 262 NAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSP 324 (1104)
Q Consensus 262 s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISP 324 (1104)
..|..++++.. .-|..+-.++..-+.+ .++.+|+---=+-|.+.||.+++ ++|+.+..
T Consensus 183 k~GV~vr~~~~--e~l~~F~~l~~~T~~R--~~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~~ 240 (406)
T PF02388_consen 183 KKGVEVREGSR--EELDDFYDLYKETAER--KGFSIRSLEYFENLYDAFGDKAK-FFLAELNG 240 (406)
T ss_dssp CTTEEEEEE-C--HHHHHHHHHHHHHHHH--TT-----HHHHHHHHHHCCCCEE-EEEEEECC
T ss_pred cCceEEEEcCH--HHHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHhcCCCeE-EEEEEEcH
Confidence 34555555532 4577788888777653 36677776666667778877755 77888753
No 106
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=58.50 E-value=4.5 Score=43.15 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..+..++...+..++..|..|+||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 34455665555556678999999999874
No 107
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.80 E-value=22 Score=42.15 Aligned_cols=114 Identities=14% Similarity=0.230 Sum_probs=69.0
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccC---C------CCCCccccCeecCCCCChHHHHHHHHHHH
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLER---S------VYPPAYTFDRVFGCECPTRQVYEEAAKEV 93 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~---s------~~~~sF~FD~VF~~~asQeeVYe~vv~pl 93 (1104)
.-+.+|++.+.-+++... +....+++.++..+...++.. . .....-+|+.|=|-+..-++|.+.+-.|+
T Consensus 94 g~~~vV~i~~~vd~~~L~--pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL 171 (406)
T COG1222 94 GPKFVVNILSFVDRDLLE--PGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPL 171 (406)
T ss_pred CCeEEEeccCCcCHHHcC--CCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccc
Confidence 346789999987776543 333445554443332222111 0 01123455555555555567777777776
Q ss_pred HH-HHh--cCCC--cceeeeccCCCCCCcccC-----------------------CChHhHHHHHHHHhhhcc
Q 001305 94 TL-SVV--NGIN--STFFAYGQTSSGKTYTMG-----------------------GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 94 V~-svL--~G~N--atIfAYGQTGSGKTyTM~-----------------------GIi~rai~dLF~~I~~~~ 138 (1104)
.. ..+ =|+. -.|+.||+.|+|||-..- |==+|.+++||.....+.
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 64 233 3554 368999999999987651 455789999999876655
No 108
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=57.80 E-value=5.5 Score=43.51 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=17.2
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
+......++-+|+.|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444556888999999999876
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=57.09 E-value=7.1 Score=44.05 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=26.8
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
+||.+.+ +.++.+.+ ...+-.|....++-||++|+|||+++..
T Consensus 13 ~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 4677665 44444432 2222244434588899999999998743
No 110
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=55.78 E-value=7.4 Score=45.51 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 80 CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 80 asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..|+.+|+.+...+. ......+|.-|..|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468889998866554 234456788999999999976
No 111
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.42 E-value=4.3 Score=42.40 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCCChHhH
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
.|..++..-. ..+..|+.|||||+|+..++-.+
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHHHHHHh
Confidence 3444443333 45668999999999987655444
No 112
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=32 Score=39.15 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred EEEEEEeCCCChhhhhcCCCcceEEecCceEE-ecCCCcc------CCCCCCccccCeecCCCCChHHHHHHHHHHHHHH
Q 001305 24 ILVFVRLRPLNEKEYARNDVSDWECINNNSIV-FKNSLLE------RSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1104)
Q Consensus 24 IrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv-~~~~~~e------~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~s 96 (1104)
-.-||||-...++|+.....+.--....+.++ +-++... +.......++.-|=|-+..-++|-+.+-.|+...
T Consensus 99 sny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~ 178 (408)
T KOG0727|consen 99 SNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHA 178 (408)
T ss_pred CceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHH
Confidence 45689999999999765432211111111111 1111111 0111223445555565666677777776776654
Q ss_pred Hh---cCCC--cceeeeccCCCCCCccc-----------------------CCChHhHHHHHHHHhhhcc
Q 001305 97 VV---NGIN--STFFAYGQTSSGKTYTM-----------------------GGITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 97 vL---~G~N--atIfAYGQTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~ 138 (1104)
-+ =|+. -.++.||+.|+|||-.. .|-=||.++++|.....+.
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 33 2443 35899999999998543 1566899999998765544
No 113
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.02 E-value=36 Score=34.44 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001305 395 QVIEEMDRQIRELTKERDLAKSRVDNLLQSIGEE 428 (1104)
Q Consensus 395 ~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~~ 428 (1104)
........++..|+.+...++.+.+.+++.+|+.
T Consensus 61 e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 61 EELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3445566777888888888888888888888874
No 114
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=54.97 E-value=72 Score=40.93 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-||.-+-.....-+-.|.|-||+.-|.+|||||.+.-
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 3665433322222337999999999999999999863
No 115
>PF13479 AAA_24: AAA domain
Probab=53.77 E-value=4.9 Score=43.35 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCCCcccC
Q 001305 102 NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1104)
+..++.||++|+|||+++.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999999874
No 116
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=53.58 E-value=3.9 Score=39.14 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.1
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999875
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=53.24 E-value=8.7 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.3
Q ss_pred cCC-CcceeeeccCCCCCCcccCC
Q 001305 99 NGI-NSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 99 ~G~-NatIfAYGQTGSGKTyTM~G 121 (1104)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 454 44666699999999998754
No 118
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.79 E-value=11 Score=42.73 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.6
Q ss_pred ceeeeccCCCCCCcccCCChH
Q 001305 104 TFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ 124 (1104)
.|+-.|+||+|||+|+..+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 566679999999999866543
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=52.48 E-value=9 Score=38.24 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
+..++.+. ..++..|.+|||||.++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 33444442 4456778999999998753
No 120
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=52.34 E-value=6.6 Score=44.92 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.++..++.+ ...|+..|.||||||++|..
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~a 151 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLANA 151 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHHH
Confidence 344444543 45678889999999998743
No 121
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=52.25 E-value=26 Score=42.44 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=29.3
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHH-Hhc--CC--CcceeeeccCCCCCCccc
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLS-VVN--GI--NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~s-vL~--G~--NatIfAYGQTGSGKTyTM 119 (1104)
-+|+.|.+-+..-+++.+.+..|+... .+. |. ...|+-||++|+|||+++
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 455666554444455555554454421 121 22 224778999999999886
No 122
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=52.12 E-value=6.1 Score=46.84 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=26.6
Q ss_pred eeeeccCCCCCCcccCCChHhHHHHHHHHhhhcccceEEEEeeEEEEec
Q 001305 105 FFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTHQEREFVLKFSAMEIYN 153 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYN 153 (1104)
|+-||.+||||||++ +.+|+.... -.|++.++|-|.
T Consensus 33 ~~iyG~sgTGKT~~~--------r~~l~~~n~-----~~vw~n~~ecft 68 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV--------RQLLRKLNL-----ENVWLNCVECFT 68 (438)
T ss_pred EEEeccCCCchhHHH--------HHHHhhcCC-----cceeeehHHhcc
Confidence 588999999999985 556665422 238888888875
No 123
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.82 E-value=4.3 Score=43.63 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.6
Q ss_pred ceeeeccCCCCCCcccC
Q 001305 104 TFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1104)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46788999999999974
No 124
>PRK11637 AmiB activator; Provisional
Probab=51.60 E-value=1.1e+02 Score=36.82 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001305 362 KQLQKELARLENEM 375 (1104)
Q Consensus 362 k~LqkEi~rLe~eL 375 (1104)
+++++++..++.++
T Consensus 50 ~~l~~qi~~~~~~i 63 (428)
T PRK11637 50 KSIQQDIAAKEKSV 63 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 125
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=51.58 E-value=4.3 Score=38.84 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.9
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 126
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=50.93 E-value=3.5 Score=43.66 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=14.2
Q ss_pred ceeeeccCCCCCCcccCCC
Q 001305 104 TFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~GI 122 (1104)
-++.+|.||||||.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp SEEEE--TTSSHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHH
Confidence 5789999999999988654
No 127
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.70 E-value=8 Score=51.76 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccCCChHhH
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
..+...+..|...+++ ..+||||||+||.+++.+.
T Consensus 423 ~ai~~a~~~g~r~~Ll-~maTGSGKT~tai~li~~L 457 (1123)
T PRK11448 423 QAVEKAIVEGQREILL-AMATGTGKTRTAIALMYRL 457 (1123)
T ss_pred HHHHHHHHhccCCeEE-EeCCCCCHHHHHHHHHHHH
Confidence 3344455567665444 4899999999987765443
No 128
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=50.30 E-value=9.8 Score=44.22 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred ceeeeccCCCCCCcccCC
Q 001305 104 TFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~G 121 (1104)
.|+-.|.||||||++|..
T Consensus 146 nilI~G~tGSGKTTll~a 163 (323)
T PRK13833 146 NIVISGGTGSGKTTLANA 163 (323)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 477889999999999843
No 129
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=49.40 E-value=8.5 Score=44.53 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.++..++.+ ...|+..|.||||||++|..+
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~aL 168 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVNAI 168 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHHHH
Confidence 344555554 355677799999999887543
No 130
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=49.24 E-value=17 Score=45.06 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=27.5
Q ss_pred ceeeeccCCCCCCcccC------------CChHhHHHHHHHHhhhc
Q 001305 104 TFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTH 137 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~ 137 (1104)
-||..|+|.|||||-.. |-+-....++|+.+...
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 48999999999999872 66667788899887553
No 131
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=48.66 E-value=5.3 Score=40.62 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
..|....++.+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3666778999999999999874
No 132
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.16 E-value=13 Score=44.18 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.0
Q ss_pred CcceeeeccCCCCCCcccCC
Q 001305 102 NSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1104)
...|+.+|+||+|||+|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999844
No 133
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=47.99 E-value=6.3 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.2
Q ss_pred hcCCCcceeeeccCCCCCCcccC
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
+.-.++.++..|..|||||+||.
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHHH
Confidence 33377888888999999999984
No 134
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.83 E-value=90 Score=40.18 Aligned_cols=70 Identities=17% Similarity=0.356 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC----------cchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 359 ALVKQLQKELARLENEMKNLQSTPK----------KCDF---TLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~~~~----------~~~~---~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
..+.+|..++++|+.+|...++... ..+. ..|..+.+..++|+.++.+|...|..=++-++.|.+.+
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788999999988877654311 0111 13444556667777777777777777666666676666
Q ss_pred hhH
Q 001305 426 GEE 428 (1104)
Q Consensus 426 ~~~ 428 (1104)
.++
T Consensus 498 ~eE 500 (697)
T PF09726_consen 498 AEE 500 (697)
T ss_pred HHH
Confidence 665
No 135
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=47.70 E-value=7.7 Score=39.47 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=17.3
Q ss_pred cee-eeccCCCCCCcccCCChHhHHHHHHH
Q 001305 104 TFF-AYGQTSSGKTYTMGGITEYAIQDIYD 132 (1104)
Q Consensus 104 tIf-AYGQTGSGKTyTM~GIi~rai~dLF~ 132 (1104)
.|+ -.|.||+||||+- ..+++.||.
T Consensus 54 LVlSfHG~tGtGKn~v~----~liA~~ly~ 79 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS----RLIAEHLYK 79 (127)
T ss_pred EEEEeecCCCCcHHHHH----HHHHHHHHh
Confidence 344 4599999999974 344566665
No 136
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=47.42 E-value=8.4 Score=45.27 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=32.0
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
..|.|+.|-| |+++= .-++..+.+..-+.|+.+|.+|+|||+.+.+
T Consensus 12 ~~~pf~~ivG----q~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVG----QEEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhC----hHHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 4899999988 44433 3344444444445688999999999998743
No 137
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=46.84 E-value=17 Score=44.25 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=30.5
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhc--C--CCcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--G--INSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G--~NatIfAYGQTGSGKTyTM~ 120 (1104)
...+||.|.+.+...+++.+ ++..+.. ..+. | ..-.|+-||++|+|||+.+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 36788888876554444443 2222110 0111 2 23358899999999999973
No 138
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=46.18 E-value=11 Score=39.68 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
++..++.. ...+.-.|+||||||.+|.
T Consensus 17 ~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 17 YLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34444433 3456778999999999873
No 139
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=46.08 E-value=6.4 Score=37.86 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=18.3
Q ss_pred eeeeccCCCCCCcccCCChHhHHHHHHHHh
Q 001305 105 FFAYGQTSSGKTYTMGGITEYAIQDIYDYI 134 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~rai~dLF~~I 134 (1104)
|+-||++|.|||+.+.= .+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~----l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKE----LAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHH----HHHHHHHHh
Confidence 57899999999998743 344444444
No 140
>PRK13764 ATPase; Provisional
Probab=46.00 E-value=7.4 Score=48.75 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=18.1
Q ss_pred CCcceeeeccCCCCCCcccCCCh
Q 001305 101 INSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~GIi 123 (1104)
....|+..|+||||||+++..++
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~ 278 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALA 278 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 34458999999999999985543
No 141
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=45.89 E-value=24 Score=45.80 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccCCChHhHHHHHHHHh-hhcccceEEEEeeEEEEeccc-cccc---CCCCCCCce
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYI-DTHQEREFVLKFSAMEIYNES-VRDL---LSTDSTPLR 168 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I-~~~~~~~f~V~vS~lEIYNE~-V~DL---Ls~~s~~L~ 168 (1104)
+..+.+|.|+.|.| +||||||-+.+ +| ++..|+..- ....+.-+.|++|=+---|.- .+-| +..-.-++.
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAAf--Lp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~ 105 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAAF--LP-VINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVA 105 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHHH--HH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccc
Confidence 44557999999988 99999998743 21 233333321 111233556666655443321 1111 111111222
Q ss_pred eeeC----CCCCeEecCceEEEeCCHHHHHHHHHHH
Q 001305 169 LLDD----PEKGTVVERLTEETLTDMSHLMELLAVC 200 (1104)
Q Consensus 169 i~ed----~~~gv~V~gLtev~V~S~eE~l~LL~~g 200 (1104)
++.. ..+.-.+.+=..+-+++++.+.-+|...
T Consensus 106 vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~ 141 (814)
T COG1201 106 VRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP 141 (814)
T ss_pred eecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH
Confidence 2211 1223446666678888888887777543
No 142
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=45.35 E-value=96 Score=28.93 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQS 424 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~ 424 (1104)
...+..|++|+..|+-.+-.+............++...+.-+++-++..|+++.+..+..+.++...
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888877776665544221110001112222233345555666666666555555555443
No 143
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.27 E-value=9.1 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.2
Q ss_pred HhcCCCcceeeeccCCCCCCcccC
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
+-.+.-..++-||++|+|||+.+.
T Consensus 31 i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 31 IEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHcCCCceEEEECCCCCCHHHHHH
Confidence 345555577779999999998764
No 144
>PHA00729 NTP-binding motif containing protein
Probab=45.26 E-value=13 Score=41.19 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHh
Q 001305 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
++.++..+..|--..|+.+|.+|+||||....+..+
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666655444357999999999999987665443
No 145
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=44.97 E-value=11 Score=47.75 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-||.-+....-.-...|.|-||+..|.+|||||.++
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 477655444433334799999999999999999985
No 146
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=44.45 E-value=10 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=19.1
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+-.++.+. +.|+-.|.||||||+++
T Consensus 166 L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 166 LRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 33444444 77889999999999997
No 147
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=43.95 E-value=26 Score=39.49 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCCcceeeeccCCCCCCcccCCChHhHHHHHHHHhhhc-ccceEEEEeeEEEE
Q 001305 100 GINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTH-QEREFVLKFSAMEI 151 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEI 151 (1104)
.-+.+|.-||+=|||||+.| +.+.+.+... ...-+.|+++.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l--------~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL--------NMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH--------HHHHHHHhcccccceeeEEEccccC
Confidence 56778999999999999875 4455555554 33455666666654
No 148
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=43.89 E-value=15 Score=41.13 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHhc--CCCcceeeeccCCCCCCcccC
Q 001305 82 TRQVYEEAAKEVTLSVVN--GINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 82 QeeVYe~vv~plV~svL~--G~NatIfAYGQTGSGKTyTM~ 120 (1104)
|+++.+.+ ..++..... +....++-||+.|+|||+.+.
T Consensus 9 ~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 9 QEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 66666553 333332221 222347789999999998764
No 149
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=43.43 E-value=14 Score=42.95 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.++..++.+. ..|+..|.||||||.+|.
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 3444444332 347778999999999873
No 150
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.37 E-value=16 Score=41.34 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 86 YEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 86 Ye~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+...+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 178 ~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 178 CAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 344455666 666677788899999999999987
No 151
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.80 E-value=1.4e+02 Score=27.77 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 360 LVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 360 Lik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
.|.-||-||..|+.+...+... ..+.....+.++.+-..|+.+....+.++..|+-.+
T Consensus 19 TI~LLQmEieELKEknn~l~~e--------~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQE--------VQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455777777777765554322 123344566677777777777777777777766443
No 152
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=42.63 E-value=18 Score=46.56 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=30.6
Q ss_pred HHHH-HHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChHhH
Q 001305 85 VYEE-AAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 85 VYe~-vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
-|+. ++..+++.+-+|.+-.+++ -.||+|||+|.+-|+.+.
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlv-MATGTGKTrTAiaii~rL 209 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLV-MATGTGKTRTAIAIIDRL 209 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEE-EecCCCcceeHHHHHHHH
Confidence 3444 4577888888999995555 589999999997665544
No 153
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=42.18 E-value=15 Score=38.32 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=17.3
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++.++.|.| ++..++||+|||.+
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHH
Confidence 344456877 57778999999987
No 154
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.14 E-value=1.5e+02 Score=33.87 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLL 422 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~ 422 (1104)
.-+..++++...++.++..+...... ...-.++.+.++.+.+.+|++|+.+++.++.+|.+..
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~-~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEE-IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665432110 0112334445555555555555555555555555433
No 155
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.10 E-value=97 Score=27.80 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 001305 358 KALVKQLQKELARLENEMKNLQST 381 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~ 381 (1104)
.+.+.+|++++..++.++..+...
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888776543
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=42.08 E-value=18 Score=41.35 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.9
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
-.|+-||++|+|||++.
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 35789999999999986
No 157
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=42.07 E-value=15 Score=40.08 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=13.7
Q ss_pred CCcceeeeccCCCCCCccc
Q 001305 101 INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM 119 (1104)
.+-.+++.|+.||||||..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999864
No 158
>PRK06547 hypothetical protein; Provisional
Probab=42.03 E-value=16 Score=38.57 Aligned_cols=28 Identities=25% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.++..+..+.---|..+|.+|||||+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444555444555666699999999875
No 159
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=41.93 E-value=14 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.0
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345568887 67788999999965
No 160
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=41.90 E-value=7.4 Score=37.01 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=15.7
Q ss_pred eeeeccCCCCCCcccCCChHh
Q 001305 105 FFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~r 125 (1104)
|+-.|.+|||||+...-+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 577899999999886544333
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.34 E-value=1.1e+02 Score=38.57 Aligned_cols=34 Identities=35% Similarity=0.471 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001305 395 QVIEEMDRQIRELTKERDLAKSRVDNLLQSIGEE 428 (1104)
Q Consensus 395 ~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~~ 428 (1104)
..++.++.+|..|++++.....+++.|...+...
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777766666666666666655543
No 162
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=41.22 E-value=18 Score=43.30 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhcC----CCcceeeeccCCCCCCcccC
Q 001305 83 RQVYEEAAKEVTLSVVNG----INSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 83 eeVYe~vv~plV~svL~G----~NatIfAYGQTGSGKTyTM~ 120 (1104)
...|.....-+..++.+- ...-|.-.|+||.|||+|+.
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 344555444444444444 25667778999999999984
No 163
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=41.16 E-value=9.3 Score=44.74 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.1
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
..|+..|.||||||++|.
T Consensus 163 ~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred CeEEEECCCCccHHHHHH
Confidence 347788999999999984
No 164
>PTZ00424 helicase 45; Provisional
Probab=40.99 E-value=14 Score=42.92 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 344566789885 46789999999764
No 165
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=40.33 E-value=9.4 Score=37.43 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.2
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 166
>PLN03025 replication factor C subunit; Provisional
Probab=40.11 E-value=19 Score=41.14 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=17.6
Q ss_pred cCCCcceeeeccCCCCCCcccCCC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.|.-..++-||+.|+|||+++..+
T Consensus 31 ~~~~~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 31 DGNMPNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred cCCCceEEEECCCCCCHHHHHHHH
Confidence 343334677999999999998553
No 167
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=39.70 E-value=18 Score=45.89 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHHHHHHHHhc-----CCCcceeeeccCCCCCCcccCCChHhH
Q 001305 89 AAKEVTLSVVN-----GINSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 89 vv~plV~svL~-----G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
++..++..+.. |.+..|+.. .||||||+||..++..+
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~la~~l 287 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFAARKA 287 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHHHHHH
Confidence 34566666665 345555443 99999999997655443
No 168
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=25 Score=40.88 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=48.3
Q ss_pred ccCeecCCCCChHHHHHHHHHHHH-HHHhcCCC---cceeeeccCCCCCCccc-----------------------CCCh
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVT-LSVVNGIN---STFFAYGQTSSGKTYTM-----------------------GGIT 123 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV-~svL~G~N---atIfAYGQTGSGKTyTM-----------------------~GIi 123 (1104)
..+-|-|-+.--+.+-+.+..|+- .+++.|.- ..|+.||+.|+||+|.. +|--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 445565655555556666655652 46777664 67999999999999976 2667
Q ss_pred HhHHHHHHHHhhhcc
Q 001305 124 EYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 124 ~rai~dLF~~I~~~~ 138 (1104)
+..+..||....++.
T Consensus 211 EkLVknLFemARe~k 225 (439)
T KOG0739|consen 211 EKLVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788999998776655
No 169
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=39.60 E-value=8.5 Score=37.94 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.3
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 170
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=39.40 E-value=19 Score=40.18 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.2
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4544457889999999998874
No 171
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.31 E-value=17 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=18.3
Q ss_pred cCCCcceeeeccCCCCCCcccCC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.|.-..++-||++|+|||+++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45555788899999999998743
No 172
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=39.02 E-value=24 Score=44.94 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 83 RQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 83 eeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
--||.-+......-+-.|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 3467654443333334799999999999999999986
No 173
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=38.71 E-value=19 Score=43.92 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=21.3
Q ss_pred HHhcCCCcceeeeccCCCCCCccc---CCChHh
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTM---GGITEY 125 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM---~GIi~r 125 (1104)
.+..|.| +|.||+.|||||... .||+|-
T Consensus 194 AAAGgHn--Ll~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 194 AAAGGHN--LLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred HHhcCCc--EEEecCCCCchHHhhhhhcccCCC
Confidence 3445666 688999999999986 487763
No 174
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=38.46 E-value=10 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.6
Q ss_pred CcceeeeccCCCCCCcccCCCh
Q 001305 102 NSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi 123 (1104)
+--++.+|.||||||..|..++
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l~ 63 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELL 63 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHHH
Confidence 3457899999999998754443
No 175
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=37.89 E-value=17 Score=43.09 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3445678877 788899999999763
No 176
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=37.54 E-value=9.7 Score=40.07 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.3
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999954
No 177
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=37.02 E-value=16 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.5
Q ss_pred ceeeeccCCCCCCcccCCChHh
Q 001305 104 TFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~r 125 (1104)
.++..|++|+|||||+..++-.
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999998765433
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=36.81 E-value=18 Score=44.34 Aligned_cols=45 Identities=31% Similarity=0.364 Sum_probs=32.7
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|.||.+++....-..+.+.+. .+...+..|+-+|.+||||++..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~------~~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQAR------VVARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHHH------HHhCcCCCEEEECCCCccHHHHH
Confidence 4789999987665555554431 23467888999999999998754
No 179
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=36.63 E-value=18 Score=44.64 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCC--cceeeeccCCCCCCccc
Q 001305 90 AKEVTLSVVNGIN--STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 90 v~plV~svL~G~N--atIfAYGQTGSGKTyTM 119 (1104)
++..+...+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 3445555555553 46788999999999987
No 180
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.59 E-value=18 Score=42.88 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=18.8
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3445678987 566779999999863
No 181
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=36.55 E-value=18 Score=41.56 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.3
Q ss_pred HhcCCCcceeeeccCCCCCCcccCCChHh
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
--.+-+.-++-||+.|||||.+|.-++..
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 46 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLAQAVHY 46 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34566778999999999999998654433
No 182
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=36.54 E-value=13 Score=39.54 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=14.5
Q ss_pred CCcceeeeccCCCCCCcccC
Q 001305 101 INSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~ 120 (1104)
.-..+|..||.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34568888999999998763
No 183
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.38 E-value=1.3e+02 Score=34.95 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 001305 404 IRELTKERDLAKSR 417 (1104)
Q Consensus 404 i~EL~~erd~~q~~ 417 (1104)
|.++..++..++.+
T Consensus 246 i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 246 IEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 184
>PRK04406 hypothetical protein; Provisional
Probab=36.38 E-value=2.9e+02 Score=25.80 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 363 QLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 363 ~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
.+...|.+|+..+... +..|++|.+.+-+.+++++.++.++..|.+.+.+
T Consensus 8 ~le~Ri~~LE~~lAfQ---------------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQ---------------EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777665443 3445566666666666666666666666554433
No 185
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=36.29 E-value=31 Score=44.08 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCccc
Q 001305 84 QVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 84 eVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1104)
-||.-+-. ....++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA~~-Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIADT-AYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHHHH-HHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 46654433 333333 699999999999999999986
No 186
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.19 E-value=1.2e+02 Score=32.45 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 393 KEQVIEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 393 ~e~~i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
..+++++++++++..+.+.+.++.+.+++.+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666544
No 187
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=35.82 E-value=13 Score=41.16 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.7
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
..++-||++|+|||++...
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4578899999999998744
No 188
>PF05729 NACHT: NACHT domain
Probab=35.63 E-value=12 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=14.9
Q ss_pred ceeeeccCCCCCCcccCC
Q 001305 104 TFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~G 121 (1104)
.++-+|..|+|||..|..
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 367899999999998743
No 189
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=35.58 E-value=1.8e+02 Score=33.03 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 360 LVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 360 Lik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
-++.|..++..|+.++..+...........-..++..+..+..+|..+..++..++.+++++..
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 3566788888888888777655222111122333444445555555544444444444444433
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.53 E-value=14 Score=43.91 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.1
Q ss_pred CcceeeeccCCCCCCcccCCChH
Q 001305 102 NSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
...++-+|+||+|||+|+..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999865443
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=35.37 E-value=49 Score=42.40 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=32.2
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhcCC----CcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI----NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~----NatIfAYGQTGSGKTyTM~ 120 (1104)
..++||.|-+-+..-+.+.+.+..|+.. .++..+ ...|+-||++|+|||+.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHH
Confidence 4578888876554444555444433321 222221 2468899999999998763
No 192
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=35.28 E-value=28 Score=44.57 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHH-hcCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSV-VNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~sv-L~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-||.-+ ......+ -.|.|-||+.-|.+|||||.|.-
T Consensus 76 Hiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 76 HIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 466543 2233333 36899999999999999999974
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.17 E-value=1.6e+02 Score=30.87 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 001305 361 VKQLQKELARLENEMKNLQST 381 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~ 381 (1104)
+..|+.++..|+.+|..+...
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 344555555666666665544
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=35.09 E-value=36 Score=40.36 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=28.6
Q ss_pred ccc-cC-eecCCCCChHHHHHHHHHHHHHHHhcC---CCcceeeeccCCCCCCccc
Q 001305 69 AYT-FD-RVFGCECPTRQVYEEAAKEVTLSVVNG---INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~-FD-~VF~~~asQeeVYe~vv~plV~svL~G---~NatIfAYGQTGSGKTyTM 119 (1104)
.|. || .||| +++.-+.++.-+. ....| .+-.|.-.|++|+|||...
T Consensus 45 ~y~~F~~~~~G----~~~~i~~lv~~l~-~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 45 RYRFFDHDFFG----MEEAIERFVNYFK-SAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eccccchhccC----cHHHHHHHHHHHH-HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 444 45 7888 4445555544333 33333 4566788899999999764
No 195
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.78 E-value=2.6e+02 Score=25.91 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 389 LLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQS 424 (1104)
Q Consensus 389 ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~ 424 (1104)
..+....++.+++.++.++....+.+...+..|...
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666555543
No 196
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=34.62 E-value=33 Score=43.80 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-||.-+-...-.-+-.|.|-||+.-|.+|||||.|.-
T Consensus 69 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 69 HLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 4666543333222337999999999999999999973
No 197
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=34.60 E-value=22 Score=42.68 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455678887 677789999999873
No 198
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=34.56 E-value=33 Score=43.76 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH-hcCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSV-VNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~sv-L~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-||.-+ ......+ -.|.|-||+.-|.+|||||.|.-
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 68 HIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 466543 3333333 36899999999999999999873
No 199
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.50 E-value=24 Score=41.25 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=25.9
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcC-CCcceeeeccCCCCCCccc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNG-INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1104)
+||.|.| |+.+-+. +...+..| ...+++-||+.|+|||+++
T Consensus 14 ~~~~iiG----q~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 5666665 4444333 33333343 3456789999999999876
No 200
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.31 E-value=3.9e+02 Score=32.55 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHhcCCCCcccCCCCc----hhhHHhhhcc----CCCceeeEEEecCCCCCChHHHHHHHH--HHHHHhh
Q 001305 275 RSLLTLGTVIRKLSKGRNAHIPYRDS----KLTRILQNSL----GGNARTAIICTMSPARSHVEQSRNTLL--FASCAKE 344 (1104)
Q Consensus 275 kSLlaLg~VI~aLs~gk~~hIPYRDS----KLTrLLqdsL----GGNSkT~mI~tISPs~~~~eETLsTLr--FAsrAK~ 344 (1104)
+|-..+..|+..+.-... |++. ++..-|+..+ .+++.++=|..-+|++.....-.+++- |-..-..
T Consensus 78 ~Sr~v~~~vi~~l~l~~~----~~~~~~~~~~~~~l~~~l~v~~~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~ 153 (498)
T TIGR03007 78 LSRPNLEKVIRMLDLDLG----AKSPAQLEALITKLRKNISISLAGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLG 153 (498)
T ss_pred hChHHHHHHHHHcCCCcc----cCCHHHHHHHHHHHHhCcEEeecCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 455566777777633211 2221 1233455554 345666666666777766666666641 2111111
Q ss_pred cccccccccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 345 VATNAQVNVVMSDKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQS 424 (1104)
Q Consensus 345 Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~ 424 (1104)
.+.........--...+.++++++...+.++...+................++..++.++..++.++..++.+++.|.+.
T Consensus 154 ~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 154 SKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000000001223445555666656665554332111111112234556677777777777777777777776655
Q ss_pred Hh
Q 001305 425 IG 426 (1104)
Q Consensus 425 ~~ 426 (1104)
+.
T Consensus 234 l~ 235 (498)
T TIGR03007 234 LG 235 (498)
T ss_pred hc
Confidence 44
No 201
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=34.08 E-value=28 Score=43.17 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=31.8
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGK 115 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGK 115 (1104)
...|+||.+.+....-.++-+. + .-+.+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~-----a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLEL-----A-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHHHH-----H-HhhcCCCCcEEEecCCCccH
Confidence 4579999999865433333222 2 44689999999999999999
No 202
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.52 E-value=2e+02 Score=27.41 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
|.-||-||..|+.+...+... ..........+..+...|+.+....+.|+..|+-.+
T Consensus 20 I~LLqmEieELKekn~~L~~e--------~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQE--------VQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666554333211 011112234577778888888888888888887554
No 203
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=33.30 E-value=22 Score=43.37 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=19.2
Q ss_pred cCCCceeeEEEecCCCCCChHHHHHHHHHHH
Q 001305 310 LGGNARTAIICTMSPARSHVEQSRNTLLFAS 340 (1104)
Q Consensus 310 LGGNSkT~mI~tISPs~~~~eETLsTLrFAs 340 (1104)
+.-..+..||||++..... +..|.+|-
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Al 346 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYAL 346 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHH
Confidence 4556899999999988754 44555553
No 204
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=25 Score=44.79 Aligned_cols=37 Identities=22% Similarity=0.529 Sum_probs=28.6
Q ss_pred CCcceeeeccCCCCCCcccC-----------------------CChHhHHHHHHHHhhhc
Q 001305 101 INSTFFAYGQTSSGKTYTMG-----------------------GITEYAIQDIYDYIDTH 137 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~-----------------------GIi~rai~dLF~~I~~~ 137 (1104)
.-..|+.||+.|.||||... |--+..+++||......
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSA 759 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhcc
Confidence 34679999999999999872 55567888999865443
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.03 E-value=24 Score=43.43 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
...+.||.+++....-..+.+.+. . +...+..|+-+|.+||||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~-----~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQAR-----K-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCccHHHHH
Confidence 357899999986654444444431 1 2446788999999999998765
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=32.98 E-value=15 Score=35.97 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=14.7
Q ss_pred eeeeccCCCCCCcccCCC
Q 001305 105 FFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GI 122 (1104)
++-+|.+|+|||+.+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 467999999999987544
No 207
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=32.54 E-value=75 Score=37.81 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.4
Q ss_pred cCCCcceeeeccCCCCCCccc
Q 001305 99 NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|+.-+|++.|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 699999999999999999765
No 208
>PRK11637 AmiB activator; Provisional
Probab=32.41 E-value=1.9e+02 Score=34.75 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 392 EKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 392 e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
..+.+|..++.+|..++.++..++.+++.+...+
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555444444444444443333
No 209
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.31 E-value=31 Score=39.95 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.1
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
..|.-.|++|+|||+|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466777999999999974
No 210
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.28 E-value=18 Score=43.39 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=27.9
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+||.|+| |+.+... .+++-.-+-.|.-.+.+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 3455554 4444433 24444444567778889999999999864
No 211
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=32.28 E-value=37 Score=43.51 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHH-hcCCCcceeeeccCCCCCCccc
Q 001305 83 RQVYEEAAKEVTLSV-VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 83 eeVYe~vv~plV~sv-L~G~NatIfAYGQTGSGKTyTM 119 (1104)
--||.-+ ......+ -.|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 3467644 3333333 3699999999999999999986
No 212
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.98 E-value=24 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=17.6
Q ss_pred cceeeeccCCCCCCccc-------CCChHh
Q 001305 103 STFFAYGQTSSGKTYTM-------GGITEY 125 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM-------~GIi~r 125 (1104)
+.+.-+|+||||||..+ +|-.|+
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~ 56 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPR 56 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 45667899999999876 466665
No 213
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.75 E-value=19 Score=42.07 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.0
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
-+-|+..|+||||||+..
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356889999999999864
No 214
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=31.73 E-value=13 Score=43.12 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCcccCCCCchhhHHhhhccC---CCce-eeEEEecCCCC
Q 001305 278 LTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLG---GNAR-TAIICTMSPAR 326 (1104)
Q Consensus 278 laLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLG---GNSk-T~mI~tISPs~ 326 (1104)
+.|.+.|..-+.|-. +.|+-||+|.+. -|++ --+|-+-.|-.
T Consensus 274 ~QlsRFin~yt~glp-------~~i~~LLKdif~~~~~n~~ysWiiYnt~P~~ 319 (369)
T PF02456_consen 274 SQLSRFINNYTKGLP-------TAISLLLKDIFNHHQQNSKYSWIIYNTDPVS 319 (369)
T ss_pred HHHHHHHHHhccCCC-------hhHHHHHHHHHHHHHhcCCccEEEecCCCCc
Confidence 468888888776522 468888888874 3444 44444555543
No 215
>PRK10536 hypothetical protein; Provisional
Probab=31.70 E-value=25 Score=39.93 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=27.1
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.|.|-.|-+-+..|..... .+.+ +..++..|++|+||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4556666665555544333 2223 3488999999999999863
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.52 E-value=34 Score=44.80 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=0.0
Q ss_pred cCeecCCCCChHHHHHHHHHHHHHHHhcCCC------cceeeeccCCCCCCccc
Q 001305 72 FDRVFGCECPTRQVYEEAAKEVTLSVVNGIN------STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 72 FD~VF~~~asQeeVYe~vv~plV~svL~G~N------atIfAYGQTGSGKTyTM 119 (1104)
+.+|+| |...-..+ ...+..+..|.. +.++-+|++|+|||++.
T Consensus 567 ~~~viG----Q~~ai~~l-~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 567 HHRVIG----QNEAVEAV-SNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCeEeC----CHHHHHHH-HHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
No 217
>PRK04195 replication factor C large subunit; Provisional
Probab=31.24 E-value=19 Score=43.77 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=20.9
Q ss_pred HHHHHHHhcCC-CcceeeeccCCCCCCccc
Q 001305 91 KEVTLSVVNGI-NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 91 ~plV~svL~G~-NatIfAYGQTGSGKTyTM 119 (1104)
..++.....|. ...++.||++|+|||+++
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 33444444554 567889999999999886
No 218
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=31.20 E-value=30 Score=43.35 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=17.7
Q ss_pred cceeeeccCCCCCCcccCCChHhH
Q 001305 103 STFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
-..+-.|+.|+|||||+.-|+.++
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHHH
Confidence 445678999999999986554433
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.60 E-value=2.7e+02 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 390 LKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQS 424 (1104)
Q Consensus 390 l~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~ 424 (1104)
|......+..++++++.|+.+.+.+..++..+.+.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666666555544
No 220
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.43 E-value=28 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
..+..++.|.+ +++..+||||||.+
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~ 42 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLC 42 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHH
Confidence 34556678987 46667999999975
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=30.38 E-value=46 Score=40.38 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=16.6
Q ss_pred CcceeeeccCCCCCCcccCC
Q 001305 102 NSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1104)
-..|+-+|.+|+|||+|...
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45688899999999999744
No 222
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=30.17 E-value=13 Score=44.03 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=13.5
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
.-++..|.||||||.+|..
T Consensus 16 ~~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIRH 34 (386)
T ss_dssp G-EEEEE-TTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3478899999999976544
No 223
>PRK14974 cell division protein FtsY; Provisional
Probab=30.14 E-value=47 Score=38.93 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.7
Q ss_pred CcceeeeccCCCCCCcccCC
Q 001305 102 NSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1104)
...|.-.|.+|+|||.|+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 35788899999999999754
No 224
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.13 E-value=2.9e+02 Score=32.15 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q 001305 365 QKELARLENEMKNL 378 (1104)
Q Consensus 365 qkEi~rLe~eL~~l 378 (1104)
....+.|+.++..+
T Consensus 183 ~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 183 RERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 225
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.10 E-value=1.7e+02 Score=32.27 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 390 LKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 390 l~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
..+.+.+.+++.+++..++.+++.++.+++.+...+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777777777777666543
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=29.78 E-value=24 Score=37.36 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHhcCC---CcceeeeccCCCCCCcccC
Q 001305 95 LSVVNGI---NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 95 ~svL~G~---NatIfAYGQTGSGKTyTM~ 120 (1104)
|.++.|- ...+.-||.+|||||....
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3455444 5678899999999997653
No 227
>PHA02244 ATPase-like protein
Probab=29.67 E-value=43 Score=40.04 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=26.9
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
....||.-|-.... .+......+...+-.|.+ |+-+|++|+|||+...
T Consensus 90 ~l~~~d~~~ig~sp---~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 90 DISGIDTTKIASNP---TFHYETADIAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred chhhCCCcccCCCH---HHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 34556655543332 333332333333345555 5569999999998763
No 228
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.41 E-value=30 Score=42.29 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=25.9
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCC-cceeeeccCCCCCCccc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN-STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~N-atIfAYGQTGSGKTyTM 119 (1104)
+||.|.| |+.+ ...+...+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divG----q~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777777 3444 2223333334443 45789999999999886
No 229
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=29.41 E-value=3.8e+02 Score=27.74 Aligned_cols=67 Identities=15% Similarity=0.338 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
.+-.+|+++|..|+..+..+..........+..--......+..-++.|.+++..++.++.++.-.+
T Consensus 15 E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rL 81 (129)
T PF15372_consen 15 ELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999988876544322111111111224455555666666666666665544333
No 230
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=29.38 E-value=30 Score=43.04 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|.|+.+++....-+.+.+.+ ..+...+..|+-+|.+||||++..
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i------~~~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTI------LLYARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHHHH------HHHhCCCCcEEEECCCCCCHHHHH
Confidence 477888887554333333332 224667889999999999998654
No 231
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=29.33 E-value=39 Score=37.76 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 89 AAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 89 vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+...++..+..|.+ |+-+|++|+|||...
T Consensus 10 l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 10 VTSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 33444445556655 456899999999875
No 232
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=29.32 E-value=32 Score=42.59 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=28.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+|+.+++.+..- +.+...++.+....|+-||++|+|||+..
T Consensus 61 p~~f~~iiGqs~~i--------~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 61 PKSFDEIIGQEEGI--------KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred cCCHHHeeCcHHHH--------HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 35677888754222 22233345666677888999999999754
No 233
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=29.12 E-value=35 Score=39.13 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.4
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 467889999999999875
No 234
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=29.11 E-value=41 Score=40.89 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=21.1
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccCCChHh
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
.-+-.++| ++-.|++|+||||...++-+.
T Consensus 204 ~fve~~~N--li~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYN--LIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCc--EEEECCCCCCHHHHHHHHhHH
Confidence 33446666 466799999999998765555
No 235
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=29.05 E-value=31 Score=43.86 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=29.3
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+.|+.+++....-..+.+.+. .+...+..|+-+|.+|||||+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~------~~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVE------MVAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHHH------HHhCCCCCEEEECCCCcCHHHHH
Confidence 567777765544444444331 23467788999999999998753
No 236
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=28.99 E-value=18 Score=39.89 Aligned_cols=20 Identities=30% Similarity=0.565 Sum_probs=16.7
Q ss_pred CcceeeeccCCCCCCcccCC
Q 001305 102 NSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1104)
...++-||..|+|||+++.+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45689999999999997644
No 237
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.85 E-value=17 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.1
Q ss_pred cceeeeccCCCCCCcccCCChH
Q 001305 103 STFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ 124 (1104)
..|+-.|+||+|||+|+..+.-
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3667779999999999865433
No 238
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=28.81 E-value=34 Score=37.12 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHHHhcCC---CcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVNGI---NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~G~---NatIfAYGQTGSGKTyTM~ 120 (1104)
+-+|.++.|- .++++.+|.+|+|||+-..
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~ 43 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQ 43 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHH
Confidence 4466777543 6778888999999998653
No 239
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.71 E-value=58 Score=38.69 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..+|..+|+|.+| +....||||||....
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFa 62 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFA 62 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhh
Confidence 3456677899997 456699999998863
No 240
>PHA02653 RNA helicase NPH-II; Provisional
Probab=28.58 E-value=45 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
.++..++.|.+ |+..|+||||||..
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 34455567765 58899999999954
No 241
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.48 E-value=24 Score=44.92 Aligned_cols=18 Identities=44% Similarity=0.442 Sum_probs=14.8
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
...++.+|+||||||.+.
T Consensus 162 ~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCcEEEECCCCChHHHHH
Confidence 345889999999999775
No 242
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=28.46 E-value=39 Score=39.58 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=30.7
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
|.|..|.| |+++ ..-++..+++..-+.++-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 55666666 4433 3445567777666778899999999998874
No 243
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=28.34 E-value=32 Score=43.39 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..+||.+++. ...... ++..+..++...++-||++|+|||+.+.
T Consensus 150 p~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred cCcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 3567777763 333333 3444556778889999999999998763
No 244
>PRK02119 hypothetical protein; Provisional
Probab=28.26 E-value=4.9e+02 Score=24.18 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 363 QLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 363 ~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
.+...|.+|+..+... +..|++|.+.+-+..++++.++.++..|.+.+.+
T Consensus 6 ~~e~Ri~~LE~rla~Q---------------E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQ---------------ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666655433 3345555555555555556555555555554433
No 245
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.19 E-value=3.2e+02 Score=31.94 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001305 363 QLQKELARLENEMKNLQ 379 (1104)
Q Consensus 363 ~LqkEi~rLe~eL~~l~ 379 (1104)
.+.+..+.|+.++..++
T Consensus 176 ~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 176 KLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 246
>PRK00295 hypothetical protein; Provisional
Probab=27.98 E-value=4.7e+02 Score=23.91 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 395 QVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 395 ~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
..|++|.+.+-+..++++.++.++..|.+.+.+
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544443
No 247
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.72 E-value=30 Score=42.82 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=31.2
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..|.||.+++....-..+.+.+ ..+...+..|+-+|.+||||++..
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i------~~~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALV------RLYARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cccchhheeeCCHHHHHHHHHH------HHHhCCCCcEEEECCCCcCHHHHH
Confidence 3588888887554333333332 224667889999999999997654
No 248
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=27.69 E-value=46 Score=36.17 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhc-CCCcceeeeccCCCCCCccc
Q 001305 83 RQVYEEAAKEVTLSVVN-GINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 83 eeVYe~vv~plV~svL~-G~NatIfAYGQTGSGKTyTM 119 (1104)
..+|..++..+...+-. +..-.|.-.|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34565555555444333 44445556699999999876
No 249
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=27.66 E-value=28 Score=37.34 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=21.4
Q ss_pred HHHHHHhcC---CCcceeeeccCCCCCCccc
Q 001305 92 EVTLSVVNG---INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 92 plV~svL~G---~NatIfAYGQTGSGKTyTM 119 (1104)
+-+|.++.| ....+.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 446777765 3567788999999999765
No 250
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.61 E-value=2.4e+02 Score=32.38 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
+..-+.++..++.+...++...... .....+...++.+.+++|.++..+...++.+|..+...|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L-~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESL-DNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666665555544321100 00122223334444444444444444444444444444433
No 251
>CHL00176 ftsH cell division protein; Validated
Probab=27.38 E-value=26 Score=44.41 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
..|+-||++|+|||+.+.
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999873
No 252
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=58 Score=39.57 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=39.9
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc----CCCcceeeeccCCCCCCcccC-----------------------
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN----GINSTFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~----G~NatIfAYGQTGSGKTyTM~----------------------- 120 (1104)
.++|+.+-+-+.-.+.+.+.+..++.. ..+. +....|+-||+.|+|||++.-
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 344555544333333444444444332 2222 345579999999999999861
Q ss_pred CChHhHHHHHHHHhh
Q 001305 121 GITEYAIQDIYDYID 135 (1104)
Q Consensus 121 GIi~rai~dLF~~I~ 135 (1104)
|-....++.+|....
T Consensus 318 Gesek~ir~~F~~A~ 332 (494)
T COG0464 318 GESEKNIRELFEKAR 332 (494)
T ss_pred chHHHHHHHHHHHHH
Confidence 555667888887665
No 253
>PF13173 AAA_14: AAA domain
Probab=27.33 E-value=23 Score=34.88 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
-.++-+|+.|+|||+.|.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357889999999999863
No 254
>PRK04328 hypothetical protein; Provisional
Probab=27.29 E-value=36 Score=37.71 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHHHhcC---CCcceeeeccCCCCCCcc
Q 001305 92 EVTLSVVNG---INSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 92 plV~svL~G---~NatIfAYGQTGSGKTyT 118 (1104)
+-+|.++.| ..++++.+|.+|+|||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 346777866 478889999999999854
No 255
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.18 E-value=1.7e+02 Score=29.59 Aligned_cols=25 Identities=16% Similarity=0.533 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 395 QVIEEMDRQIRELTKERDLAKSRVD 419 (1104)
Q Consensus 395 ~~i~ele~qi~EL~~erd~~q~~i~ 419 (1104)
..+.+++.++.+|..++.++..+++
T Consensus 105 ~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555444
No 256
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=27.15 E-value=50 Score=42.09 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCcccC
Q 001305 84 QVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 84 eVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.||.-. ......++ .|.|-||+.-|.+|||||.|+-
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 68 HIFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 466543 22233333 6899999999999999999973
No 257
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=27.05 E-value=20 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.6
Q ss_pred CcceeeeccCCCCCCcccCCCh
Q 001305 102 NSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi 123 (1104)
|.-++..|.||||||++|..++
T Consensus 430 n~n~~I~G~tGsGKS~~~~~l~ 451 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQELI 451 (797)
T ss_pred ccceEEEcCCCCCHHHHHHHHH
Confidence 4457888999999999986544
No 258
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=26.87 E-value=48 Score=43.00 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCccc
Q 001305 84 QVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 84 eVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1104)
-||.-+-. ....++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~-Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLAQT-AYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHHHH-HHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 46654332 233333 799999999999999999986
No 259
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=62 Score=37.19 Aligned_cols=41 Identities=22% Similarity=0.453 Sum_probs=28.9
Q ss_pred hcCCCc--ceeeeccCCCCCCcccC-----------------------CChHhHHHHHHHHhhhcc
Q 001305 98 VNGINS--TFFAYGQTSSGKTYTMG-----------------------GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 98 L~G~Na--tIfAYGQTGSGKTyTM~-----------------------GIi~rai~dLF~~I~~~~ 138 (1104)
--|+.- .|+.||+.|+|||.... |-=.|.+++||+.....+
T Consensus 205 ~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 205 NLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 270 (435)
T ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 346643 58999999999998762 223477889998654443
No 260
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.84 E-value=2.6e+02 Score=25.43 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 397 IEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 397 i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
|++|.+.+-+..++++.++.++..|..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 261
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=26.82 E-value=51 Score=38.06 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.0
Q ss_pred CcceeeeccCCCCCCcccCCChHhHHHHHHHHhhhcccceEEEE
Q 001305 102 NSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTHQEREFVLK 145 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~ 145 (1104)
-+||+..|-.|||||..| +.|..++.......|.|-
T Consensus 19 p~~ilVvGMAGSGKTTF~--------QrL~~hl~~~~~ppYviN 54 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFM--------QRLNSHLHAKKTPPYVIN 54 (366)
T ss_pred CcEEEEEecCCCCchhHH--------HHHHHHHhhccCCCeEEe
Confidence 568999999999999865 445555545554455544
No 262
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.78 E-value=2.2e+02 Score=28.30 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 389 LLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 389 ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
.|+.+++.+..++.++.-|.-..+++..|+..|...+..
T Consensus 34 ~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 34 QLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999999999999999888876663
No 263
>CHL00195 ycf46 Ycf46; Provisional
Probab=26.65 E-value=48 Score=40.81 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.3
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999886
No 264
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=26.62 E-value=23 Score=35.41 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.7
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+..|..|||||+..
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 265
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=26.62 E-value=14 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.1
Q ss_pred cCCCcceeeeccCCCCCCccc
Q 001305 99 NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|++-+||..|++|+|||..+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 378889999999999998753
No 266
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=26.62 E-value=34 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455678876 678889999999874
No 267
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=26.54 E-value=26 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.0
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
+--++-+|++|+|||-++
T Consensus 33 ~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp TEEEEEESSTTSSHHHHH
T ss_pred CCcEEEECCCCCchhHHH
Confidence 556788999999999765
No 268
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=26.43 E-value=45 Score=42.46 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=17.0
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.+...-++..|+||||||....
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred ccCCceEEEECCCCCcHHHHHH
Confidence 4444568999999999998753
No 269
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=26.35 E-value=46 Score=40.90 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 4556678887 567779999999763
No 270
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=26.19 E-value=35 Score=36.70 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHhcCC---CcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVNGI---NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~G~---NatIfAYGQTGSGKTyTM~ 120 (1104)
+-+|.++.|- ...+.-+|.+|+|||..+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4467777543 4567899999999998764
No 271
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=26.12 E-value=53 Score=42.15 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.5
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34788999999999876
No 272
>PRK00131 aroK shikimate kinase; Reviewed
Probab=26.09 E-value=26 Score=35.28 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.7
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
-.|+.+|.+|||||+..
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999875
No 273
>PRK04325 hypothetical protein; Provisional
Probab=25.98 E-value=2.6e+02 Score=25.97 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001305 364 LQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 364 LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~ 426 (1104)
+...|.+|+..+... +..|++|.+.+-+.+++++.++.++..|...+.
T Consensus 7 ~e~Ri~~LE~klAfQ---------------E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 7 MEDRITELEIQLAFQ---------------EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566676655443 334555555555555555555555555544443
No 274
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.92 E-value=5e+02 Score=24.02 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 395 QVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 395 ~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
..|++|.+.+-+.+++++.++.++..|.+.+.+
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555556666666666666555444
No 275
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=25.90 E-value=21 Score=46.76 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCCcceeeeccCCCCCCcccCCChHh
Q 001305 100 GINSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
..|+-.+.+|+||||||++|..++-.
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~~li~q 498 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLTNLLMQ 498 (893)
T ss_pred CCcccEEEECCCCCCHHHHHHHHHHH
Confidence 34777889999999999998655433
No 276
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=25.79 E-value=40 Score=38.61 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.+++..++.+. ..|+-.|.||||||..|.
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 34555555443 456677999999999873
No 277
>PRK09039 hypothetical protein; Validated
Probab=25.56 E-value=2.5e+02 Score=33.10 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001305 361 VKQLQKELARLENEMKNL 378 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l 378 (1104)
+..|+.+|+.|+.+|..+
T Consensus 139 V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 139 VELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555544433
No 278
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=25.56 E-value=27 Score=35.98 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=13.1
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 279
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.55 E-value=37 Score=42.40 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456789988 566779999999764
No 280
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=25.51 E-value=59 Score=37.03 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 79 ~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-..|.++-+. +.+.+-.|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 3445544433 4444556755 455669999999875
No 281
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=25.51 E-value=59 Score=37.03 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 79 ~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-..|.++-+. +.+.+-.|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 3445544433 4444556755 455669999999875
No 282
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=25.45 E-value=37 Score=43.79 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 456778899999999987
No 283
>PRK07261 topology modulation protein; Provisional
Probab=25.23 E-value=28 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.8
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+..|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999764
No 284
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.12 E-value=27 Score=42.67 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=15.9
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+|.+ ++|++|||||||+.-
T Consensus 109 ~~Grd--l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAF 128 (482)
T ss_pred ecCCc--eEEEccCCCcchHHH
Confidence 34544 589999999999985
No 285
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=25.07 E-value=25 Score=35.58 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCcceeeeccCCCCCCcccCCCh
Q 001305 89 AAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 89 vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1104)
.++.+...+-.| ..|+-+|.-|+|||+-+.|+.
T Consensus 4 la~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l~ 36 (123)
T PF02367_consen 4 LAKKLAQILKPG--DVILLSGDLGAGKTTFVRGLA 36 (123)
T ss_dssp HHHHHHHHHSS---EEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCC--CEEEEECCCCCCHHHHHHHHH
Confidence 344455444233 568999999999999876643
No 286
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=24.65 E-value=26 Score=39.55 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.6
Q ss_pred cCCCcceeeeccCCCCCCccc
Q 001305 99 NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|+.-.|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999999764
No 287
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.64 E-value=2.7e+02 Score=33.92 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001305 361 VKQLQKELARLENEMKN 377 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~ 377 (1104)
+++.+++|++++.++..
T Consensus 40 l~q~q~ei~~~~~~i~~ 56 (420)
T COG4942 40 LKQIQKEIAALEKKIRE 56 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 288
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=24.56 E-value=44 Score=40.05 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.5
Q ss_pred cceeeeccCCCCCCcccCCChHhH
Q 001305 103 STFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
.-++.+|+||||||.++ ++|.+
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~l 66 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNL 66 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHH
Confidence 55789999999999987 35544
No 289
>PRK06696 uridine kinase; Validated
Probab=24.51 E-value=57 Score=35.37 Aligned_cols=35 Identities=26% Similarity=0.135 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++.+.++..++. .-.+....|..-|.+|||||+..
T Consensus 5 ~~~~~la~~~~~-~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILT-LNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHH-hCCCCceEEEEECCCCCCHHHHH
Confidence 444444444432 12444556667799999999875
No 290
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.46 E-value=26 Score=43.02 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.3
Q ss_pred cceeeeccCCCCCCcccCCC
Q 001305 103 STFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1104)
..|.-.|++|+|||+|+.-|
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKL 276 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKL 276 (484)
T ss_pred cEEEEECCCCccHHHHHHHH
Confidence 46777899999999998543
No 291
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.41 E-value=28 Score=39.79 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.5
Q ss_pred eeccCCCCCCccc
Q 001305 107 AYGQTSSGKTYTM 119 (1104)
Q Consensus 107 AYGQTGSGKTyTM 119 (1104)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 3599999999997
No 292
>PRK00846 hypothetical protein; Provisional
Probab=24.38 E-value=6e+02 Score=24.10 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 364 LQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 364 LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
+...|..|+..+... +..|++|.+.+.+..++++.++.++..|...+.+
T Consensus 11 le~Ri~~LE~rlAfQ---------------e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 11 LEARLVELETRLSFQ---------------EQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655432 3344555555555555555555555544444433
No 293
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.38 E-value=4.4e+02 Score=28.33 Aligned_cols=58 Identities=26% Similarity=0.446 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
...+..|+.++..|+.+++.+.. .++++...++.+..++..|.-+...++.++..|..
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~--------~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEE--------ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655432 34555555666666666665555555555555443
No 294
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.32 E-value=5.2e+02 Score=26.34 Aligned_cols=21 Identities=52% Similarity=0.763 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001305 359 ALVKQLQKELARLENEMKNLQ 379 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~ 379 (1104)
.++.+|+..|.+++.|+..++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 295
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.00 E-value=2.9e+02 Score=35.83 Aligned_cols=31 Identities=10% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 395 QVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 395 ~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
+.++.+|+++.+.+++|..+++++.+..+.-
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999988888887766543
No 296
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.85 E-value=54 Score=42.16 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhcCC------CcceeeeccCCCCCCccc
Q 001305 82 TRQVYEEAAKEVTLSVVNGI------NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 82 QeeVYe~vv~plV~svL~G~------NatIfAYGQTGSGKTyTM 119 (1104)
|.++-+.++..+. ....|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~-~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIK-RSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHH-HHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4445555443332 333444 346788999999999875
No 297
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=23.73 E-value=37 Score=39.77 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=15.6
Q ss_pred eeeeccCCCCCCcccCCChHhH
Q 001305 105 FFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~ra 126 (1104)
++.+|.||||||+++ ++|.+
T Consensus 2 ~lv~g~tGsGKt~~~--viP~l 21 (384)
T cd01126 2 VLVFAPTRSGKGVGF--VIPNL 21 (384)
T ss_pred eeEecCCCCCCccEE--Eccch
Confidence 578899999999987 34444
No 298
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=23.71 E-value=39 Score=39.57 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..++..++.+. +.|+..|.||||||.+|.
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 44555555543 678889999999998763
No 299
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=23.67 E-value=48 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHhc-CC--CcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVN-GI--NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~-G~--NatIfAYGQTGSGKTyTM~ 120 (1104)
+-+|.++. |+ ...+.-+|++|+|||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 45677775 44 4467889999999998764
No 300
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.64 E-value=34 Score=39.36 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred HHhcCCCcceeeeccCCCCCCccc
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++-+||.--|++.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 566999999999999999999765
No 301
>PHA02624 large T antigen; Provisional
Probab=23.58 E-value=38 Score=42.76 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=23.0
Q ss_pred HHHHHhcCCCc--ceeeeccCCCCCCcccCC
Q 001305 93 VTLSVVNGINS--TFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 93 lV~svL~G~Na--tIfAYGQTGSGKTyTM~G 121 (1104)
++..++.|... ||+-||+.|||||+-..+
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 35566777766 999999999999986544
No 302
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=23.57 E-value=42 Score=41.76 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..++..++.|.|+ ++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 4445566889874 55669999999874
No 303
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.44 E-value=64 Score=41.83 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.0
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
.+|.-.|++|+|||+|+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4677889999999999853
No 304
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=23.44 E-value=29 Score=42.93 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=14.0
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999864
No 305
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.42 E-value=2.7e+02 Score=25.29 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 390 LKEKEQVIEEMDRQIRELTKERDL 413 (1104)
Q Consensus 390 l~e~e~~i~ele~qi~EL~~erd~ 413 (1104)
|++.+.++.+|..+|+.|+++.+.
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 306
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.34 E-value=60 Score=39.36 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=16.2
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
..|+-.|++|+|||+|+.-
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4678899999999999854
No 307
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=23.31 E-value=25 Score=36.03 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=14.3
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45568999999999887
No 308
>PRK08118 topology modulation protein; Reviewed
Probab=23.30 E-value=32 Score=35.90 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=12.2
Q ss_pred eeeeccCCCCCCcc
Q 001305 105 FFAYGQTSSGKTYT 118 (1104)
Q Consensus 105 IfAYGQTGSGKTyT 118 (1104)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999964
No 309
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.29 E-value=37 Score=40.97 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
...+..+++|.|.. ..++||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 34566778998864 4569999999663
No 310
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=23.24 E-value=32 Score=34.10 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=13.5
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998764
No 311
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=23.18 E-value=51 Score=42.42 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-..++..+| |.|..|-+ +||+|||+..
T Consensus 67 Q~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 67 QEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 345677888 99976655 9999999864
No 312
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=23.16 E-value=32 Score=35.58 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=13.0
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998664
No 313
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=23.11 E-value=29 Score=35.24 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.2
Q ss_pred eeeeccCCCCCCcc
Q 001305 105 FFAYGQTSSGKTYT 118 (1104)
Q Consensus 105 IfAYGQTGSGKTyT 118 (1104)
|+..|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999854
No 314
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=80 Score=40.66 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=21.3
Q ss_pred CcceeeeccCCCCCCcccCCChHhHHHHHHHHhh
Q 001305 102 NSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYID 135 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~ 135 (1104)
++.|+-||+.|||||- .++.||++..
T Consensus 431 ~~~Ill~G~~GsGKT~--------L~kal~~~~~ 456 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTN--------LVKALFDYYS 456 (952)
T ss_pred cccEEEeCCCCCCHhH--------HHHHHHHHhc
Confidence 6789999999999984 5677777765
No 315
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=23.04 E-value=27 Score=31.36 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.7
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999876
No 316
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.90 E-value=2.5e+02 Score=37.69 Aligned_cols=38 Identities=13% Similarity=0.378 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001305 389 LLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 389 ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~ 426 (1104)
.+.+.+.+++.|++++..++.++..+....+.+.+.+.
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666555543
No 317
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.82 E-value=53 Score=43.20 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=16.6
Q ss_pred cceeeeccCCCCCCccc-------CCChH
Q 001305 103 STFFAYGQTSSGKTYTM-------GGITE 124 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM-------~GIi~ 124 (1104)
+..+-+|+||||||.-+ +|-.+
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~ 54 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTP 54 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCC
Confidence 34456799999998765 57766
No 318
>PRK04296 thymidine kinase; Provisional
Probab=22.80 E-value=23 Score=37.59 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.8
Q ss_pred ceeeeccCCCCCCcccCCChHhH
Q 001305 104 TFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
.++-+|+.|+|||..+.|++.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 46779999999998877755444
No 319
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.76 E-value=65 Score=37.84 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=50.1
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHh-c--CCCc--ceeeeccCCCCCCcccC---------------------
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV-N--GINS--TFFAYGQTSSGKTYTMG--------------------- 120 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL-~--G~Na--tIfAYGQTGSGKTyTM~--------------------- 120 (1104)
+..|+||.|-+-...-.++-+.+.-|++...+ . |+.. .+.-||+.|+|||+-..
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 56789999887555445555556666665333 2 4433 46889999999998751
Q ss_pred --CChHhHHHHHHHHhhhccc
Q 001305 121 --GITEYAIQDIYDYIDTHQE 139 (1104)
Q Consensus 121 --GIi~rai~dLF~~I~~~~~ 139 (1104)
|=.-|.+++.|.+...+..
T Consensus 206 yiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCc
Confidence 4445889999998876654
No 320
>PLN02199 shikimate kinase
Probab=22.54 E-value=1.1e+02 Score=35.75 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 86 YEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 86 Ye~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
-...+..+. ..+. +.+|+-.|..|||||+..
T Consensus 89 Lk~~a~~i~-~~l~--~~~I~LIG~~GSGKSTVg 119 (303)
T PLN02199 89 LKRKAEEVK-PYLN--GRSMYLVGMMGSGKTTVG 119 (303)
T ss_pred HHHHHHHHH-HHcC--CCEEEEECCCCCCHHHHH
Confidence 444444444 3333 457899999999999874
No 321
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=22.43 E-value=39 Score=34.15 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.5
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999775
No 322
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.41 E-value=8.9e+02 Score=25.15 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhcccccccc--cccCHHHHHHHHHHHHHHHHHHHHhhcCCCC---cchhhHHHHHHHHHHHHHHHH
Q 001305 330 EQSRNTLLFASCAKEVATNAQVN--VVMSDKALVKQLQKELARLENEMKNLQSTPK---KCDFTLLKEKEQVIEEMDRQI 404 (1104)
Q Consensus 330 eETLsTLrFAsrAK~Ikn~p~vN--~~~sd~aLik~LqkEi~rLe~eL~~l~~~~~---~~~~~ll~e~e~~i~ele~qi 404 (1104)
-.|+++|+.|----+--..|--. +...|.+++.+|++ +..|+..-........ .....-.++.+..|...+.-+
T Consensus 18 Fa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~-Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~ 96 (131)
T PF04859_consen 18 FATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRR-LSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVV 96 (131)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHH
Confidence 45677776653222222222211 22345556655553 4555554443333222 111234456666777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhh
Q 001305 405 RELTKERDLAKSRVDNLLQSIGEEDQ 430 (1104)
Q Consensus 405 ~EL~~erd~~q~~i~~L~q~~~~~~~ 430 (1104)
++|+.+.+...+++..|.+.+.+...
T Consensus 97 ~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 97 KKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777766543
No 323
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.37 E-value=3.7e+02 Score=33.00 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001305 360 LVKQLQKELARLENEMKNLQ 379 (1104)
Q Consensus 360 Lik~LqkEi~rLe~eL~~l~ 379 (1104)
.+.+++..++++.+++...+
T Consensus 383 k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776655
No 324
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=22.27 E-value=41 Score=36.22 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=20.8
Q ss_pred HHHHHh-cCC--CcceeeeccCCCCCCcccC
Q 001305 93 VTLSVV-NGI--NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL-~G~--NatIfAYGQTGSGKTyTM~ 120 (1104)
-+|.++ .|+ ..++..+|++|+|||+...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 456666 454 5678889999999998754
No 325
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.18 E-value=6.1e+02 Score=24.34 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 001305 360 LVKQLQKELARLENEMKNLQS 380 (1104)
Q Consensus 360 Lik~LqkEi~rLe~eL~~l~~ 380 (1104)
-+..|+.++..|+..++.+..
T Consensus 20 e~~~L~~~~~~L~~~~R~~~G 40 (100)
T PF01486_consen 20 EIAKLRKENESLQKELRHLMG 40 (100)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 345677777777777776654
No 326
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=22.07 E-value=74 Score=41.79 Aligned_cols=43 Identities=28% Similarity=0.467 Sum_probs=26.7
Q ss_pred CeecCCCCChHHHHHHHHHHHHHHHhcCCC------cceeeeccCCCCCCcccC
Q 001305 73 DRVFGCECPTRQVYEEAAKEVTLSVVNGIN------STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 73 D~VF~~~asQeeVYe~vv~plV~svL~G~N------atIfAYGQTGSGKTyTM~ 120 (1104)
.+|+| |.+.-+.++.-+. .+..|.+ ++++-+|+||+|||++..
T Consensus 566 ~~v~G----Q~~Av~~v~~~i~-~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 566 ERVIG----QDHALEAIAERIR-TARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred CeEcC----hHHHHHHHHHHHH-HHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 45666 4444444433333 3334543 468889999999999863
No 327
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=22.05 E-value=53 Score=35.03 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHHHHhc-CCC--cceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVN-GIN--STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~-G~N--atIfAYGQTGSGKTyTM~ 120 (1104)
+-+|.++. |+. ..+..+|.+|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 34677775 554 347899999999998754
No 328
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=22.03 E-value=56 Score=43.36 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=11.4
Q ss_pred eeeccCCCCCCcccC
Q 001305 106 FAYGQTSSGKTYTMG 120 (1104)
Q Consensus 106 fAYGQTGSGKTyTM~ 120 (1104)
..--.||||||||+.
T Consensus 63 ~~~M~TGtGKT~~~~ 77 (986)
T PRK15483 63 DIKMETGTGKTYVYT 77 (986)
T ss_pred EEEeCCCCCHHHHHH
Confidence 334489999999774
No 329
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=21.95 E-value=30 Score=35.70 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=14.3
Q ss_pred ceeeeccCCCCCCcccC
Q 001305 104 TFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1104)
.|+..|++|||||.++.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999998864
No 330
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.78 E-value=46 Score=41.02 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=25.2
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcC-CCcceeeeccCCCCCCccc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNG-INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1104)
+||.|.| |+.+.+.+ .. .+-.| ....++-||+.|+|||.++
T Consensus 12 ~~~dvvG----q~~v~~~L-~~---~i~~~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVVG----QEHVKEVL-LA---ALRQGRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhcC----hHHHHHHH-HH---HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4666666 55554433 11 22233 2345689999999999886
No 331
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=21.76 E-value=75 Score=41.27 Aligned_cols=40 Identities=30% Similarity=0.382 Sum_probs=0.0
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHhcCC------CcceeeeccCCCCCCcc
Q 001305 74 RVFGCECPTRQVYEEAAKEVTLSVVNGI------NSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 74 ~VF~~~asQeeVYe~vv~plV~svL~G~------NatIfAYGQTGSGKTyT 118 (1104)
+|+| |.+.-+.+ ...|.....|. .+.++-+|+||+|||++
T Consensus 459 ~ViG----Q~~ai~~l-~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~l 504 (758)
T PRK11034 459 LVFG----QDKAIEAL-TEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_pred eEeC----cHHHHHHH-HHHHHHHhccccCCCCCcceEEEECCCCCCHHHH
No 332
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=21.75 E-value=81 Score=35.40 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=26.6
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhc-C-CCcceeeeccCCCCCCcc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVN-G-INSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~-G-~NatIfAYGQTGSGKTyT 118 (1104)
+||.+.| |+.|-... +.++..+.. | .-..++-||+.|.|||..
T Consensus 22 ~L~efiG----Q~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEFIG----QEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-S-----HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHccC----cHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 4555554 88888764 566666553 2 234578899999999864
No 333
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=21.69 E-value=36 Score=33.32 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.6
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+-.|++|||||+..
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998764
No 334
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.65 E-value=49 Score=42.52 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCCChHhHH
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGGITEYAI 127 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~GIi~rai 127 (1104)
++.-+..+....++-||++|+|||+...|+..+++
T Consensus 194 ~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 194 TIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44333445555678999999999999877655443
No 335
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=52 Score=41.68 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.4
Q ss_pred cceeeeccCCCCCCcccC-----------------------CChHhHHHHHHHHhhhcc
Q 001305 103 STFFAYGQTSSGKTYTMG-----------------------GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~-----------------------GIi~rai~dLF~~I~~~~ 138 (1104)
-.|+.||+.|.|||.+.. |--++++.++|+......
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA 527 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC
Confidence 469999999999998862 566788999998765544
No 336
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.61 E-value=5e+02 Score=27.83 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001305 393 KEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGEE 428 (1104)
Q Consensus 393 ~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~~ 428 (1104)
...+++.|++++..|.++....+...+.|...|...
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777676665543
No 337
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=21.59 E-value=4.8e+02 Score=31.77 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=24.6
Q ss_pred eeEEEecCCCCCChHHHHHHHHHHHHHhhccc
Q 001305 316 TAIICTMSPARSHVEQSRNTLLFASCAKEVAT 347 (1104)
Q Consensus 316 T~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn 347 (1104)
+.|.+-|-|....+++.+.+++=+.+-+.-++
T Consensus 324 ~pI~a~vlp~grSLDecme~kqk~~r~r~gkr 355 (486)
T KOG2185|consen 324 NPILAKVLPAGRSLDECMEEKQKKKRSRGGKR 355 (486)
T ss_pred cchhhhhccCCCCHHHHHHHHHHhhccccccc
Confidence 45667888999999999999988877544443
No 338
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=85 Score=36.64 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=28.1
Q ss_pred ceeeeccCCCCCCccc-----------------------CCChHhHHHHHHHHhhhcc
Q 001305 104 TFFAYGQTSSGKTYTM-----------------------GGITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~ 138 (1104)
.|+.||..|+|||... .|-=|+.++.||...+.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a 278 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC
Confidence 5789999999998754 1566899999998776655
No 339
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=21.58 E-value=1.4e+02 Score=35.52 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC-------------------CChHh---HHHHHHHH
Q 001305 76 FGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG-------------------GITEY---AIQDIYDY 133 (1104)
Q Consensus 76 F~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~-------------------GIi~r---ai~dLF~~ 133 (1104)
||-...|..+++-+ -..++.|-.-.++-.|+.|||||+-+- |.+.- |+..|-.+
T Consensus 27 ~g~~~~~~~l~~~l----kqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 27 FGVQDEQKHLSELL----KQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred eehHHHHHHHHHHH----HHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 34344555666543 346678988889999999999999872 44433 66666655
Q ss_pred hhhcccceEEEEeeEEE
Q 001305 134 IDTHQEREFVLKFSAME 150 (1104)
Q Consensus 134 I~~~~~~~f~V~vS~lE 150 (1104)
+....++...+..|+-|
T Consensus 103 l~~e~~~~~k~~gsfte 119 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTE 119 (408)
T ss_pred HHHHHhhhheeecccch
Confidence 54444333444444444
No 340
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=21.53 E-value=51 Score=40.42 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=30.4
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|+.+.+....-..+++.+. . +...+..|+-+|.+|+||++..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~-----~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIE-----V-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCHHHHHHHHHHH-----H-HhCCCCcEEEECCCCccHHHHH
Confidence 67777776554455555442 2 4567889999999999998654
No 341
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=21.51 E-value=3.9e+02 Score=29.86 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 390 LKEKEQVIEEMDRQIRELTKERDLAKSRVDNLL 422 (1104)
Q Consensus 390 l~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~ 422 (1104)
++.+++++..+.+-++...++||.|+.+++.|+
T Consensus 28 lRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 28 LRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888899999999999887
No 342
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.51 E-value=2.4e+02 Score=30.44 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 360 LVKQLQKELARLENEMKNLQSTPKKCDFTLLKEK--EQVIEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 360 Lik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~--e~~i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
-+..|..+|.+|..+++.++..-+.-+ +-++++ ...+++|+++|.+|.++......++.++..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~ve-aEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVE-AEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888887777765422111 122222 244677888888888887777777777654
No 343
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=21.49 E-value=58 Score=38.11 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHhcCCCcceeeeccCCCCCCccc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+.+|.+..++..++||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 3456788777888899999999874
No 344
>PRK10867 signal recognition particle protein; Provisional
Probab=21.44 E-value=72 Score=38.72 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.9
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
..|+..|.+|+|||+|...
T Consensus 101 ~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678889999999999744
No 345
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.40 E-value=8.1e+02 Score=30.01 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 001305 358 KALVKQLQKELARLENEMKNLQS 380 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~ 380 (1104)
+..++.|+.|+.||+..|...+.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999987654
No 346
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.37 E-value=30 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=16.9
Q ss_pred cceeeeccCCCCCCcccCCCh
Q 001305 103 STFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi 123 (1104)
-.|+-.|++|+|||+|+..+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356788999999999986653
No 347
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=21.24 E-value=59 Score=39.32 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=24.5
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
-++.+-+|....-|..|.-||||||.+.
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 4577889999999999999999999863
No 348
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.21 E-value=3.6e+02 Score=31.55 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 001305 82 TRQVYEEAAKEVT 94 (1104)
Q Consensus 82 QeeVYe~vv~plV 94 (1104)
.-++|..+|+.+-
T Consensus 64 ~LElY~~sC~EL~ 76 (312)
T smart00787 64 LLELYQFSCKELK 76 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 349
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=21.17 E-value=52 Score=41.38 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=29.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|+|+.+.+....-..+.+.+ ..+ ...+..|+-+|.+|+||++..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~-----~~~-a~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFG-----RQA-AKSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEECCHHHHHHHHHH-----HHH-hCcCCCEEEECCCCcCHHHHH
Confidence 567888876544333333332 222 356778999999999998654
No 350
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.15 E-value=4.9e+02 Score=29.11 Aligned_cols=132 Identities=11% Similarity=0.176 Sum_probs=64.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhcccc
Q 001305 269 EGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATN 348 (1104)
Q Consensus 269 Eg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~ 348 (1104)
|...+.+....+.+.+.... ++|-.-+.--. ..-++.....|.+-|-| ..+++-+..|. ..-.|...
T Consensus 57 ev~d~~~a~~~i~~~~~~~g----G~i~~~~~~~~----~~~~~~~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~ 123 (262)
T PF14257_consen 57 EVKDVEKAVKKIENLVESYG----GYIESSSSSSS----GGSDDERSASLTIRVPA--DKFDSFLDELS---ELGKVTSR 123 (262)
T ss_pred EECCHHHHHHHHHHHHHHcC----CEEEEEeeecc----cCCCCcceEEEEEEECH--HHHHHHHHHHh---ccCceeee
Confidence 45556677777777777652 12211110000 11122334455555544 46777777776 11233322
Q ss_pred cccccccC-----HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 349 AQVNVVMS-----DKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 349 p~vN~~~s-----d~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
......++ -.+.++.++++..+|..-|+.... -..+-++++++.+.+.+++.++.++..|.+
T Consensus 124 ~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~-------------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 124 NISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT-------------VEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22112221 123344445555555544432210 122445777777888888888888877765
Q ss_pred HHh
Q 001305 424 SIG 426 (1104)
Q Consensus 424 ~~~ 426 (1104)
.+.
T Consensus 191 ~v~ 193 (262)
T PF14257_consen 191 RVD 193 (262)
T ss_pred hhc
Confidence 443
No 351
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=21.04 E-value=33 Score=38.87 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.5
Q ss_pred ceeeeccCCCCCCcccC
Q 001305 104 TFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1104)
-|+-+|++|+|||+...
T Consensus 60 ~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVAL 76 (284)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 48889999999998763
No 352
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=20.93 E-value=92 Score=34.03 Aligned_cols=55 Identities=31% Similarity=0.596 Sum_probs=34.4
Q ss_pred HHhccCCCCcchh-hhhh------hhhcCC-CCcchhhHH------HHHHHHHHhhhcC---CC-Cccccccc
Q 001305 1022 KKWGIALNTKQRS-LQLA------RRIWSS-TKDMNHIKE------SASLVAKLIDFVQ---PG-QAPKEIFG 1076 (1104)
Q Consensus 1022 ~kwgi~l~~k~r~-lql~------~~lwt~-~~d~~hv~e------sa~~vaklv~~~e---~~-~~~kemf~ 1076 (1104)
-+|.||..-|-|- -.|. .++-.. -.||+.|-+ --+|.-|||.||. +| +-+|+||.
T Consensus 115 ~~~kiPpePkg~~s~eL~~KI~k~y~~k~k~~mdmnrliq~~keFRNPsiydkLi~FcdI~E~gTnypkdm~D 187 (238)
T KOG2959|consen 115 PHWKIPPEPKGEVSTELEKKIKKFYKLKAKGIMDMNRLIQDNKEFRNPSIYDKLIDFCDIKEPGTNYPKDMWD 187 (238)
T ss_pred ccccCCCCCCCcccHHHHHHHHHHHHHHhhcchhHHHHHhhhhhccCcHHHHHHHHHhccccccccCChhhcC
Confidence 4699998888773 2222 222222 345555554 3489999999994 55 56777764
No 353
>PRK08233 hypothetical protein; Provisional
Probab=20.91 E-value=36 Score=34.73 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.2
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|.--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999875
No 354
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.86 E-value=2.1e+02 Score=25.63 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 392 EKEQVIEEMDRQIRELTKERDLAKSRVDNL 421 (1104)
Q Consensus 392 e~e~~i~ele~qi~EL~~erd~~q~~i~~L 421 (1104)
....++..++.++.+++.+.+.++.+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666666666666666
No 355
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.83 E-value=32 Score=39.72 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.4
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
.+|+-.|.||||||++|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 357888999999999984
No 356
>PTZ00014 myosin-A; Provisional
Probab=20.81 E-value=82 Score=41.28 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCcccC
Q 001305 85 VYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 85 VYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
||.-+ ......++ .+.|-||+.-|.+|||||.+.-
T Consensus 166 ifavA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK 201 (821)
T PTZ00014 166 VFTTA-RRALENLHGVKKSQTIIVSGESGAGKTEATK 201 (821)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 56543 33333333 6899999999999999998863
No 357
>PRK06217 hypothetical protein; Validated
Probab=20.78 E-value=37 Score=35.56 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=12.8
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|+-.|.+|||||+..
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999998753
No 358
>CHL00181 cbbX CbbX; Provisional
Probab=20.74 E-value=51 Score=37.56 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=13.9
Q ss_pred eeeeccCCCCCCcccC
Q 001305 105 FFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~ 120 (1104)
|+-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999999864
No 359
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.73 E-value=66 Score=40.58 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=14.7
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
..-++..|+||||||...
T Consensus 256 ~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 256 PMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CccEEEECCCCCcHHHHH
Confidence 345789999999999865
No 360
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.69 E-value=4.6e+02 Score=28.90 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 001305 361 VKQLQKELARLENEMKNLQS 380 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~ 380 (1104)
-.+|..++..|+.+++.++.
T Consensus 38 na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776653
No 361
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=20.62 E-value=60 Score=37.11 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.1
Q ss_pred hcCC-CcceeeeccCCCCCCccc
Q 001305 98 VNGI-NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~-NatIfAYGQTGSGKTyTM 119 (1104)
-.|. ..+++-||+.|+|||.+.
T Consensus 31 ~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 31 KNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HcCCCCeEEEEECCCCCCHHHHH
Confidence 3454 446889999999999876
No 362
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=20.59 E-value=33 Score=36.11 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=12.6
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999987
No 363
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.54 E-value=2.2e+02 Score=35.10 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001305 397 IEEMDRQIRELTKERDLAKSRV 418 (1104)
Q Consensus 397 i~ele~qi~EL~~erd~~q~~i 418 (1104)
.+.++.+|++|..++..++.++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444
No 364
>PRK13767 ATP-dependent helicase; Provisional
Probab=20.52 E-value=48 Score=43.50 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHhcCCCcceeeeccCCCCCCccc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+++|.|+.| ..+||||||...
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34578988655 459999999874
No 365
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.45 E-value=56 Score=41.53 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.1
Q ss_pred ceeeeccCCCCCCcccC
Q 001305 104 TFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1104)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999999985
No 366
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=20.45 E-value=38 Score=30.03 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=13.8
Q ss_pred eeeeccCCCCCCcccCCC
Q 001305 105 FFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~GI 122 (1104)
++.+|..|+|||.+...+
T Consensus 2 ~~~~g~~G~Gktt~~~~l 19 (99)
T cd01983 2 IVVTGKGGVGKTTLAANL 19 (99)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 466788899999987543
No 367
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.41 E-value=72 Score=38.78 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.4
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
..|+..|++|+|||+|+.-
T Consensus 224 ~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4577789999999999743
No 368
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.32 E-value=68 Score=37.28 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCC-CcceeeeccCCCCCCcccC
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGI-NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1104)
+||.|.+ |+.+. ..+...+-.|. ...++-||+.|+|||++..
T Consensus 15 ~~~~iig----~~~~~----~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 15 TFDDVVG----QSHIT----NTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred cHHhcCC----cHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 5666654 33333 33333434554 4478889999999998764
No 369
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=20.32 E-value=43 Score=34.37 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.1
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 370
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=20.27 E-value=56 Score=37.82 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=27.2
Q ss_pred cCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 72 FDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 72 FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
||.+++....-..+.+.+ ..+ ...+.-|+-+|.+||||++..
T Consensus 5 ~~~liG~S~~~~~~~~~i-----~~~-a~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV-----SRL-APLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCHHHHHHHHHH-----HHH-hCCCCCEEEECCCCCcHHHHH
Confidence 555666544444444443 222 356788999999999998754
No 371
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.27 E-value=3.7e+02 Score=35.67 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 001305 361 VKQLQKELARLENEMKNLQ 379 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~ 379 (1104)
+++|...+.+|++-|-.++
T Consensus 370 fkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444
No 372
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.14 E-value=3.1e+02 Score=33.96 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=6.8
Q ss_pred ccccccccccccc
Q 001305 700 DLSSLKMSRSASC 712 (1104)
Q Consensus 700 ~~~~~~~~rs~sc 712 (1104)
+.|....+.+-||
T Consensus 276 SER~~~R~~~lSC 288 (475)
T PRK13729 276 SERAIVRTRNISC 288 (475)
T ss_pred cceeEEEEeeEEe
Confidence 3444444555666
No 373
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=20.02 E-value=34 Score=32.51 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.9
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|..+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999865
Done!