Query 001305
Match_columns 1104
No_of_seqs 359 out of 2171
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 9.2E-85 3.1E-89 736.4 27.8 340 19-372 8-360 (365)
2 3b6u_A Kinesin-like protein KI 100.0 4.5E-84 1.5E-88 731.8 29.9 345 18-365 17-372 (372)
3 1goj_A Kinesin, kinesin heavy 100.0 1.5E-83 5.1E-88 724.4 26.9 330 20-359 4-344 (355)
4 1t5c_A CENP-E protein, centrom 100.0 1.2E-82 4E-87 715.7 30.4 330 20-358 2-341 (349)
5 3bfn_A Kinesin-like protein KI 100.0 2E-83 7E-88 729.2 23.7 335 19-360 18-362 (388)
6 2vvg_A Kinesin-2; motor protei 100.0 2.7E-82 9.3E-87 712.8 28.2 332 21-357 3-347 (350)
7 1x88_A Kinesin-like protein KI 100.0 3.1E-82 1.1E-86 714.8 25.7 331 19-353 5-358 (359)
8 3cob_A Kinesin heavy chain-lik 100.0 6.4E-82 2.2E-86 713.9 28.2 338 21-379 4-351 (369)
9 1bg2_A Kinesin; motor protein, 100.0 1.1E-81 3.6E-86 702.1 28.8 312 19-345 4-325 (325)
10 2wbe_C Bipolar kinesin KRP-130 100.0 2.2E-81 7.6E-86 710.8 28.5 332 19-356 20-372 (373)
11 2zfi_A Kinesin-like protein KI 100.0 2E-81 6.7E-86 709.8 27.3 330 21-353 3-362 (366)
12 2owm_A Nckin3-434, related to 100.0 9.4E-81 3.2E-85 718.7 30.8 333 19-354 35-422 (443)
13 3lre_A Kinesin-like protein KI 100.0 5.4E-81 1.9E-85 703.7 27.8 323 20-345 8-355 (355)
14 4a14_A Kinesin, kinesin-like p 100.0 1.1E-80 3.6E-85 698.9 29.3 318 18-343 7-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 2.5E-79 8.4E-84 690.0 28.0 320 23-344 2-349 (354)
16 3nwn_A Kinesin-like protein KI 100.0 3E-79 1E-83 690.1 25.0 317 19-345 21-359 (359)
17 2heh_A KIF2C protein; kinesin, 100.0 7.3E-79 2.5E-83 691.7 26.7 318 19-348 48-385 (387)
18 2h58_A Kinesin-like protein KI 100.0 1.4E-78 4.8E-83 678.2 27.7 314 21-346 3-329 (330)
19 3t0q_A AGR253WP; kinesin, alph 100.0 1.2E-78 4.2E-83 683.3 25.5 321 21-349 4-348 (349)
20 1v8k_A Kinesin-like protein KI 100.0 1.6E-78 5.5E-83 692.8 26.7 320 19-350 68-407 (410)
21 1ry6_A Internal kinesin; kines 100.0 1.3E-78 4.5E-83 685.1 25.3 321 23-353 1-339 (360)
22 2rep_A Kinesin-like protein KI 100.0 3.8E-78 1.3E-82 684.5 29.0 319 20-345 20-376 (376)
23 2nr8_A Kinesin-like protein KI 100.0 2.6E-78 9E-83 682.2 25.3 319 17-345 18-358 (358)
24 1f9v_A Kinesin-like protein KA 100.0 1.4E-78 4.8E-83 682.3 22.5 319 22-350 3-346 (347)
25 3u06_A Protein claret segregat 100.0 1.5E-76 5.2E-81 678.3 30.4 321 21-353 58-391 (412)
26 3dc4_A Kinesin-like protein NO 100.0 1.5E-76 5E-81 664.9 27.0 307 16-350 16-340 (344)
27 4etp_A Kinesin-like protein KA 100.0 1.1E-76 3.7E-81 678.6 25.0 321 21-350 58-402 (403)
28 4h1g_A Maltose binding protein 100.0 7.3E-73 2.5E-77 687.4 23.8 320 20-346 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 2.5E-29 8.7E-34 236.6 8.3 99 270-368 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 2.2E-27 7.5E-32 229.5 11.4 98 274-371 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 8.3E-23 2.8E-27 221.6 5.9 262 22-350 24-294 (298)
32 3ec2_A DNA replication protein 90.8 0.054 1.8E-06 53.9 0.6 52 68-120 5-56 (180)
33 2w58_A DNAI, primosome compone 89.3 0.11 3.9E-06 52.3 1.6 51 69-120 21-72 (202)
34 2qgz_A Helicase loader, putati 88.1 0.12 4E-06 57.0 0.8 53 70-123 121-173 (308)
35 2bjv_A PSP operon transcriptio 83.4 0.32 1.1E-05 51.2 1.2 45 69-119 2-46 (265)
36 2r62_A Cell division protease 83.2 0.64 2.2E-05 48.9 3.4 52 68-120 6-62 (268)
37 1jbk_A CLPB protein; beta barr 79.5 0.74 2.5E-05 44.4 2.1 30 91-120 32-61 (195)
38 3t15_A Ribulose bisphosphate c 79.3 0.65 2.2E-05 50.4 1.8 48 72-119 2-53 (293)
39 1g8p_A Magnesium-chelatase 38 78.6 0.72 2.5E-05 50.1 1.9 44 68-119 19-62 (350)
40 1l8q_A Chromosomal replication 77.6 1.1 3.8E-05 48.7 3.0 52 67-121 5-56 (324)
41 3bos_A Putative DNA replicatio 77.0 1.3 4.4E-05 44.8 3.2 48 69-121 24-71 (242)
42 4b4t_M 26S protease regulatory 76.2 1.4 4.7E-05 51.3 3.4 71 68-138 176-274 (434)
43 2p65_A Hypothetical protein PF 75.9 0.87 3E-05 44.0 1.4 30 91-120 32-61 (187)
44 3h4m_A Proteasome-activating n 75.4 0.67 2.3E-05 49.1 0.5 52 68-119 12-68 (285)
45 3uk6_A RUVB-like 2; hexameric 74.6 1.3 4.5E-05 48.6 2.6 46 69-119 40-87 (368)
46 1ixz_A ATP-dependent metallopr 74.6 0.65 2.2E-05 48.6 0.2 52 68-120 11-67 (254)
47 3cf0_A Transitional endoplasmi 74.3 1 3.4E-05 48.9 1.6 51 69-119 11-66 (301)
48 3te6_A Regulatory protein SIR3 74.1 0.84 2.9E-05 51.0 0.9 33 87-119 30-62 (318)
49 4b4t_K 26S protease regulatory 72.9 1.2 4.2E-05 51.6 1.9 70 69-138 168-265 (428)
50 1xwi_A SKD1 protein; VPS4B, AA 69.0 2.8 9.5E-05 46.1 3.6 51 69-119 8-62 (322)
51 1d2n_A N-ethylmaleimide-sensit 68.9 1.8 6.3E-05 45.7 2.1 22 99-120 61-82 (272)
52 4b4t_L 26S protease subunit RP 68.6 1.9 6.6E-05 50.1 2.3 71 68-138 176-274 (437)
53 4b4t_I 26S protease regulatory 68.1 7.5 0.00026 45.3 7.0 70 69-138 178-275 (437)
54 2z4s_A Chromosomal replication 68.0 2.5 8.4E-05 48.7 3.0 52 66-121 98-149 (440)
55 2qby_B CDC6 homolog 3, cell di 67.4 2.5 8.6E-05 46.3 2.8 47 68-119 15-62 (384)
56 2chg_A Replication factor C sm 67.4 2.2 7.4E-05 42.1 2.1 22 99-120 35-56 (226)
57 3b9p_A CG5977-PA, isoform A; A 67.1 1.2 4E-05 47.6 0.1 51 69-119 17-71 (297)
58 4b4t_J 26S protease regulatory 67.1 3.2 0.00011 47.9 3.6 70 69-138 144-241 (405)
59 3eie_A Vacuolar protein sortin 67.0 2.5 8.7E-05 46.1 2.7 51 69-119 14-68 (322)
60 2v1u_A Cell division control p 66.9 1.4 4.9E-05 47.9 0.7 38 82-120 24-62 (387)
61 1iy2_A ATP-dependent metallopr 66.3 1.1 3.9E-05 47.6 -0.2 52 68-120 35-91 (278)
62 2kjq_A DNAA-related protein; s 66.1 1.8 6.2E-05 42.5 1.2 19 103-121 37-55 (149)
63 2qz4_A Paraplegin; AAA+, SPG7, 65.7 0.95 3.2E-05 47.0 -1.0 20 101-120 38-57 (262)
64 3d8b_A Fidgetin-like protein 1 65.2 1.1 3.9E-05 49.8 -0.5 52 69-120 80-135 (357)
65 4b4t_H 26S protease regulatory 64.7 2 7E-05 50.4 1.5 70 69-138 205-302 (467)
66 2c9o_A RUVB-like 1; hexameric 63.9 3.2 0.00011 47.8 2.9 47 69-120 33-81 (456)
67 1qde_A EIF4A, translation init 63.5 2.4 8.2E-05 43.0 1.6 24 93-118 44-67 (224)
68 1fnn_A CDC6P, cell division co 63.2 4 0.00014 44.6 3.4 46 69-119 13-61 (389)
69 4etp_B Spindle POLE BODY-assoc 63.2 12 0.00042 41.8 7.2 237 21-327 58-310 (333)
70 1vec_A ATP-dependent RNA helic 62.8 3.2 0.00011 41.4 2.3 24 94-119 34-57 (206)
71 3vfd_A Spastin; ATPase, microt 62.6 3.6 0.00012 46.1 2.9 52 68-119 110-165 (389)
72 2qp9_X Vacuolar protein sortin 62.5 4 0.00014 45.5 3.2 51 69-119 47-101 (355)
73 1lv7_A FTSH; alpha/beta domain 62.2 1.4 4.7E-05 46.2 -0.5 51 69-120 8-63 (257)
74 2gxq_A Heat resistant RNA depe 62.0 2.7 9.2E-05 41.9 1.6 23 94-118 32-54 (207)
75 1sxj_C Activator 1 40 kDa subu 61.4 3.4 0.00012 45.2 2.4 42 71-120 23-64 (340)
76 3s4r_A Vimentin; alpha-helix, 60.4 39 0.0013 31.3 8.9 64 361-427 25-88 (93)
77 3i00_A HIP-I, huntingtin-inter 59.1 48 0.0016 32.2 9.7 64 358-425 14-77 (120)
78 3dkp_A Probable ATP-dependent 58.4 3.4 0.00011 42.7 1.6 24 93-118 59-82 (245)
79 3syl_A Protein CBBX; photosynt 58.0 3.2 0.00011 44.3 1.4 20 100-119 65-84 (309)
80 2x8a_A Nuclear valosin-contain 56.9 1.2 4.2E-05 48.0 -2.1 51 69-119 6-61 (274)
81 2jee_A YIIU; FTSZ, septum, coi 56.7 40 0.0014 30.8 8.0 57 361-425 22-78 (81)
82 3bor_A Human initiation factor 56.7 2.3 7.9E-05 44.0 0.0 24 93-118 60-83 (237)
83 1p9r_A General secretion pathw 55.6 3.6 0.00012 47.5 1.4 29 92-120 157-185 (418)
84 2pl3_A Probable ATP-dependent 55.4 4 0.00014 41.8 1.6 24 93-118 55-78 (236)
85 1iqp_A RFCS; clamp loader, ext 54.0 5.2 0.00018 42.6 2.2 42 71-120 23-64 (327)
86 3ly5_A ATP-dependent RNA helic 53.8 3.7 0.00013 43.5 1.0 24 93-118 84-107 (262)
87 3pfi_A Holliday junction ATP-d 53.6 5.9 0.0002 42.9 2.6 44 71-119 27-72 (338)
88 1sxj_D Activator 1 41 kDa subu 53.6 4.5 0.00015 43.7 1.7 43 70-120 34-76 (353)
89 1t6n_A Probable ATP-dependent 53.3 4.6 0.00016 40.9 1.6 25 93-119 44-68 (220)
90 3nmd_A CGMP dependent protein 53.0 27 0.00091 31.2 6.1 27 394-420 39-65 (72)
91 2qby_A CDC6 homolog 1, cell di 52.1 4.1 0.00014 44.2 1.0 46 69-119 16-62 (386)
92 3b6e_A Interferon-induced heli 52.0 2.4 8.2E-05 42.3 -0.7 22 96-119 44-65 (216)
93 3jvv_A Twitching mobility prot 51.9 4 0.00014 46.0 1.0 25 96-120 117-141 (356)
94 3fmo_B ATP-dependent RNA helic 51.7 4.9 0.00017 43.6 1.6 26 93-118 122-147 (300)
95 3iuy_A Probable ATP-dependent 51.4 4.8 0.00017 41.0 1.4 23 94-118 51-73 (228)
96 1wrb_A DJVLGB; RNA helicase, D 51.3 5 0.00017 41.7 1.6 24 94-119 54-77 (253)
97 3eiq_A Eukaryotic initiation f 51.2 5.8 0.0002 43.6 2.1 26 92-119 69-94 (414)
98 3co5_A Putative two-component 50.9 5.9 0.0002 38.0 1.8 22 101-122 26-47 (143)
99 1in4_A RUVB, holliday junction 50.7 6.7 0.00023 43.1 2.5 17 103-119 52-68 (334)
100 3n70_A Transport activator; si 50.0 5.6 0.00019 38.2 1.5 21 99-119 21-41 (145)
101 2zan_A Vacuolar protein sortin 49.7 3.4 0.00012 47.5 -0.0 51 69-119 130-184 (444)
102 1ofh_A ATP-dependent HSL prote 49.3 6.1 0.00021 41.7 1.8 19 102-120 50-68 (310)
103 3h1t_A Type I site-specific re 49.0 5.1 0.00017 47.3 1.3 29 91-120 188-216 (590)
104 3fe2_A Probable ATP-dependent 48.9 5.3 0.00018 41.3 1.3 23 94-118 60-82 (242)
105 3llm_A ATP-dependent RNA helic 48.7 4.8 0.00017 41.7 0.9 25 93-119 69-93 (235)
106 2oxc_A Probable ATP-dependent 48.4 6 0.0002 40.6 1.6 23 94-118 55-77 (230)
107 3pxg_A Negative regulator of g 48.4 7.6 0.00026 45.0 2.6 44 71-122 178-221 (468)
108 1njg_A DNA polymerase III subu 48.3 6.7 0.00023 38.8 1.9 18 103-120 46-63 (250)
109 3hu3_A Transitional endoplasmi 48.3 5 0.00017 47.1 1.0 51 69-119 200-255 (489)
110 3mq9_A Bone marrow stromal ant 47.7 35 0.0012 39.1 8.0 65 363-427 401-468 (471)
111 3ber_A Probable ATP-dependent 47.5 6.4 0.00022 41.3 1.6 25 93-119 73-97 (249)
112 2oap_1 GSPE-2, type II secreti 47.3 6.8 0.00023 46.3 2.0 23 96-120 256-278 (511)
113 3pvs_A Replication-associated 46.8 4.1 0.00014 47.2 -0.0 44 71-119 24-67 (447)
114 3fht_A ATP-dependent RNA helic 45.8 7 0.00024 42.8 1.7 27 93-119 55-81 (412)
115 3sjb_C Golgi to ER traffic pro 45.5 87 0.003 29.2 8.6 62 358-422 22-83 (93)
116 3cf2_A TER ATPase, transitiona 45.4 17 0.00058 45.5 5.1 69 69-137 200-296 (806)
117 3fmp_B ATP-dependent RNA helic 44.9 6.7 0.00023 44.7 1.4 27 92-118 121-147 (479)
118 3hnw_A Uncharacterized protein 44.9 76 0.0026 31.3 8.7 33 393-425 101-133 (138)
119 1u0j_A DNA replication protein 44.7 8.8 0.0003 41.9 2.2 30 91-120 90-122 (267)
120 3u61_B DNA polymerase accessor 44.2 5.1 0.00017 43.3 0.2 42 71-120 24-66 (324)
121 1q0u_A Bstdead; DEAD protein, 44.1 4.7 0.00016 41.0 -0.1 23 94-118 35-57 (219)
122 3pey_A ATP-dependent RNA helic 44.1 7.8 0.00027 42.0 1.7 27 93-119 35-61 (395)
123 1hqc_A RUVB; extended AAA-ATPa 44.0 15 0.0005 39.3 3.8 45 70-119 9-55 (324)
124 2eyu_A Twitching motility prot 43.0 6.3 0.00022 42.3 0.7 20 101-120 24-43 (261)
125 1ojl_A Transcriptional regulat 42.2 7.6 0.00026 42.3 1.2 20 100-119 23-42 (304)
126 2j0s_A ATP-dependent RNA helic 42.2 8.3 0.00028 42.6 1.6 25 93-119 67-91 (410)
127 4b3f_X DNA-binding protein smu 41.8 6.1 0.00021 47.6 0.4 28 93-121 197-224 (646)
128 1qvr_A CLPB protein; coiled co 41.5 7.5 0.00026 48.4 1.2 62 358-419 400-461 (854)
129 1w5s_A Origin recognition comp 41.4 11 0.00038 41.4 2.4 26 95-120 40-70 (412)
130 4fcw_A Chaperone protein CLPB; 41.1 6.4 0.00022 41.8 0.4 17 103-119 48-64 (311)
131 2chq_A Replication factor C sm 41.0 7.2 0.00025 41.3 0.8 22 99-120 35-56 (319)
132 1gvn_B Zeta; postsegregational 40.8 17 0.00058 39.3 3.7 32 88-119 14-50 (287)
133 1s2m_A Putative ATP-dependent 40.3 8.7 0.0003 42.1 1.3 24 94-119 52-75 (400)
134 3a7p_A Autophagy protein 16; c 39.8 1.3E+02 0.0044 30.4 9.4 58 358-423 67-124 (152)
135 2ce7_A Cell division protein F 39.7 6.9 0.00024 45.9 0.4 51 68-119 11-66 (476)
136 2fz4_A DNA repair protein RAD2 39.4 8.9 0.0003 40.1 1.2 23 96-120 104-126 (237)
137 2z0m_A 337AA long hypothetical 38.9 10 0.00035 40.2 1.6 24 94-119 25-48 (337)
138 2r44_A Uncharacterized protein 38.9 7 0.00024 42.3 0.3 18 103-120 47-64 (331)
139 1tue_A Replication protein E1; 38.3 7.8 0.00027 41.1 0.5 27 95-121 49-77 (212)
140 3hnw_A Uncharacterized protein 38.2 80 0.0027 31.2 7.7 25 394-418 109-133 (138)
141 2dhr_A FTSH; AAA+ protein, hex 38.1 6.8 0.00023 46.2 0.0 51 68-119 26-81 (499)
142 1c4o_A DNA nucleotide excision 37.6 13 0.00045 45.1 2.4 79 70-162 2-94 (664)
143 1nlw_A MAD protein, MAX dimeri 36.9 1.1E+02 0.0037 27.5 7.7 40 386-425 38-77 (80)
144 1e9r_A Conjugal transfer prote 36.8 5.6 0.00019 45.1 -1.0 25 102-126 53-77 (437)
145 2i4i_A ATP-dependent RNA helic 36.4 12 0.0004 41.3 1.6 24 94-119 46-69 (417)
146 4ayb_H DNA-directed RNA polyme 36.3 17 0.00058 33.3 2.3 45 1009-1072 20-64 (84)
147 1sxj_B Activator 1 37 kDa subu 35.6 12 0.00043 39.5 1.6 22 99-120 39-60 (323)
148 2v66_B Nuclear distribution pr 35.6 2E+02 0.0067 27.7 9.6 62 362-427 6-67 (111)
149 2d7d_A Uvrabc system protein B 35.5 33 0.0011 41.6 5.5 79 69-152 4-96 (661)
150 3mq7_A Bone marrow stromal ant 35.5 1E+02 0.0035 29.8 7.5 32 396-427 72-103 (121)
151 1w36_D RECD, exodeoxyribonucle 35.3 8.7 0.0003 46.1 0.4 23 102-124 164-186 (608)
152 3fho_A ATP-dependent RNA helic 35.1 13 0.00046 43.1 1.9 25 95-119 151-175 (508)
153 3oiy_A Reverse gyrase helicase 34.9 13 0.00044 41.4 1.6 24 93-118 29-52 (414)
154 1l8d_A DNA double-strand break 34.7 2.3E+02 0.0078 26.1 10.0 66 361-426 26-102 (112)
155 2ewv_A Twitching motility prot 34.6 7.6 0.00026 43.8 -0.3 20 101-120 135-154 (372)
156 1n0w_A DNA repair protein RAD5 34.1 12 0.00042 38.0 1.2 29 92-120 11-42 (243)
157 2p5t_B PEZT; postsegregational 33.7 22 0.00074 37.4 3.1 34 86-119 11-49 (253)
158 3nmd_A CGMP dependent protein 33.3 97 0.0033 27.7 6.5 25 390-414 42-66 (72)
159 1xti_A Probable ATP-dependent 33.2 14 0.00049 40.1 1.6 25 93-119 38-62 (391)
160 3i5x_A ATP-dependent RNA helic 32.6 14 0.0005 42.8 1.6 27 92-118 101-127 (563)
161 3c8u_A Fructokinase; YP_612366 32.5 19 0.00064 36.5 2.3 30 90-119 8-39 (208)
162 3hws_A ATP-dependent CLP prote 32.5 13 0.00043 41.1 1.1 18 102-119 51-68 (363)
163 1jr3_A DNA polymerase III subu 32.5 22 0.00075 38.6 2.9 18 102-119 38-55 (373)
164 1rif_A DAR protein, DNA helica 31.6 8.6 0.00029 40.8 -0.5 22 97-120 125-146 (282)
165 4a2p_A RIG-I, retinoic acid in 31.5 16 0.00053 41.9 1.6 25 93-119 15-39 (556)
166 2dfs_A Myosin-5A; myosin-V, in 31.5 1.3E+02 0.0044 38.9 10.1 22 98-119 152-173 (1080)
167 1sxj_E Activator 1 40 kDa subu 31.4 12 0.00042 40.5 0.7 16 105-120 39-54 (354)
168 4emc_A Monopolin complex subun 31.3 1.6E+02 0.0056 30.6 8.8 49 357-420 18-66 (190)
169 2gk6_A Regulator of nonsense t 30.8 12 0.0004 45.0 0.4 20 103-122 196-215 (624)
170 3oja_B Anopheles plasmodium-re 30.6 63 0.0021 37.9 6.6 16 319-334 391-406 (597)
171 1hv8_A Putative ATP-dependent 30.2 15 0.0005 39.4 1.0 25 94-119 37-61 (367)
172 2v1x_A ATP-dependent DNA helic 29.8 26 0.0009 41.9 3.2 25 93-119 52-76 (591)
173 2cvh_A DNA repair and recombin 29.7 16 0.00055 36.5 1.2 29 92-120 7-38 (220)
174 2db3_A ATP-dependent RNA helic 29.7 19 0.00067 40.7 2.0 24 93-118 86-109 (434)
175 1fuu_A Yeast initiation factor 29.6 10 0.00036 41.1 -0.2 25 93-119 51-75 (394)
176 3tbk_A RIG-I helicase domain; 29.6 18 0.0006 41.3 1.6 24 94-119 13-36 (555)
177 1nkp_A C-MYC, MYC proto-oncoge 29.3 2E+02 0.0068 26.1 8.3 42 385-426 42-83 (88)
178 3upu_A ATP-dependent DNA helic 29.1 20 0.0007 41.1 2.1 37 79-120 27-63 (459)
179 2w0m_A SSO2452; RECA, SSPF, un 29.1 15 0.00051 36.8 0.8 28 93-120 11-41 (235)
180 1um8_A ATP-dependent CLP prote 29.1 16 0.00054 40.5 1.1 18 102-119 72-89 (376)
181 1rz3_A Hypothetical protein rb 28.8 22 0.00074 35.9 2.0 18 102-119 22-39 (201)
182 3b85_A Phosphate starvation-in 27.6 20 0.00069 37.1 1.5 25 93-119 15-39 (208)
183 3sja_C Golgi to ER traffic pro 27.3 2.3E+02 0.0078 24.9 7.7 22 359-380 6-27 (65)
184 3pxi_A Negative regulator of g 27.3 22 0.00074 43.6 1.9 45 70-122 177-221 (758)
185 1r6b_X CLPA protein; AAA+, N-t 27.1 18 0.00061 44.1 1.1 46 71-124 184-229 (758)
186 2fwr_A DNA repair protein RAD2 26.8 19 0.00064 40.9 1.2 23 95-119 103-125 (472)
187 4gl2_A Interferon-induced heli 26.8 20 0.00068 42.9 1.4 25 93-119 15-39 (699)
188 1wp9_A ATP-dependent RNA helic 26.7 19 0.00064 39.6 1.1 25 93-120 17-41 (494)
189 2gza_A Type IV secretion syste 26.7 20 0.00067 40.2 1.3 22 96-119 171-192 (361)
190 4gp7_A Metallophosphoesterase; 26.7 12 0.00042 36.8 -0.3 17 104-120 11-27 (171)
191 3ghg_A Fibrinogen alpha chain; 26.6 53 0.0018 39.0 4.8 38 391-428 113-150 (562)
192 3b9q_A Chloroplast SRP recepto 26.3 28 0.00095 38.1 2.4 16 104-119 102-117 (302)
193 4a74_A DNA repair and recombin 26.0 20 0.00068 36.0 1.1 28 92-119 12-42 (231)
194 3nbx_X ATPase RAVA; AAA+ ATPas 25.8 22 0.00076 41.9 1.6 26 93-120 34-59 (500)
195 3sqw_A ATP-dependent RNA helic 25.8 22 0.00076 41.8 1.6 26 93-118 51-76 (579)
196 3lw7_A Adenylate kinase relate 25.8 15 0.00052 34.8 0.1 16 104-119 3-18 (179)
197 4ag6_A VIRB4 ATPase, type IV s 25.6 14 0.00048 41.3 -0.2 20 102-121 35-54 (392)
198 2b8t_A Thymidine kinase; deoxy 25.4 11 0.00039 39.7 -0.9 24 102-125 12-35 (223)
199 1ypw_A Transitional endoplasmi 25.2 25 0.00085 43.7 2.0 52 68-119 199-255 (806)
200 2orw_A Thymidine kinase; TMTK, 25.1 11 0.00038 38.1 -1.0 21 104-124 5-25 (184)
201 1x79_B RAB GTPase binding effe 25.0 3.2E+02 0.011 26.3 9.0 63 359-425 6-68 (112)
202 3lfu_A DNA helicase II; SF1 he 24.7 19 0.00066 42.6 0.8 22 99-120 19-40 (647)
203 1sxj_A Activator 1 95 kDa subu 24.6 28 0.00095 40.7 2.1 18 102-119 77-94 (516)
204 2dr3_A UPF0273 protein PH0284; 24.5 20 0.00069 36.4 0.8 27 94-120 12-41 (247)
205 2xzl_A ATP-dependent helicase 24.3 18 0.00063 45.0 0.5 21 103-123 376-396 (802)
206 2wjy_A Regulator of nonsense t 24.2 18 0.00062 45.0 0.5 20 103-122 372-391 (800)
207 3tr0_A Guanylate kinase, GMP k 24.2 15 0.0005 36.5 -0.3 16 104-119 9-24 (205)
208 3e70_C DPA, signal recognition 23.7 33 0.0011 38.1 2.4 17 103-119 130-146 (328)
209 2ykg_A Probable ATP-dependent 23.6 29 0.00098 41.4 2.0 24 94-119 22-45 (696)
210 3vlc_E Golgi to ER traffic pro 23.4 69 0.0024 30.0 4.0 57 359-418 30-86 (94)
211 2pt7_A CAG-ALFA; ATPase, prote 23.4 29 0.00098 38.5 1.8 22 96-119 167-188 (330)
212 1gm5_A RECG; helicase, replica 23.2 31 0.0011 42.9 2.2 25 95-119 382-406 (780)
213 2v71_A Nuclear distribution pr 23.2 3.3E+02 0.011 28.4 9.5 34 394-427 87-120 (189)
214 2qag_C Septin-7; cell cycle, c 23.0 16 0.00055 42.1 -0.4 23 97-119 26-48 (418)
215 1i84_S Smooth muscle myosin he 22.9 38 0.0013 43.9 3.1 34 85-118 152-185 (1184)
216 3tau_A Guanylate kinase, GMP k 22.9 19 0.00065 36.6 0.2 17 103-119 9-25 (208)
217 3a00_A Guanylate kinase, GMP k 22.8 17 0.00058 36.1 -0.2 15 105-119 4-18 (186)
218 1lkx_A Myosin IE heavy chain; 22.7 33 0.0011 42.2 2.3 22 98-119 90-111 (697)
219 1kgd_A CASK, peripheral plasma 22.3 17 0.00057 36.1 -0.4 16 104-119 7-22 (180)
220 2qnr_A Septin-2, protein NEDD5 22.0 17 0.00057 39.7 -0.4 24 96-119 12-35 (301)
221 3e1s_A Exodeoxyribonuclease V, 21.8 23 0.00078 42.4 0.6 27 94-122 198-224 (574)
222 1zp6_A Hypothetical protein AT 21.7 17 0.00059 35.6 -0.4 16 104-119 11-26 (191)
223 3cf2_A TER ATPase, transitiona 21.6 31 0.0011 43.1 1.8 50 103-161 512-584 (806)
224 2r8r_A Sensor protein; KDPD, P 21.6 15 0.0005 39.3 -0.9 20 103-122 7-26 (228)
225 2dgc_A Protein (GCN4); basic d 21.2 1.3E+02 0.0045 25.9 5.1 35 392-426 27-61 (63)
226 1w9i_A Myosin II heavy chain; 21.2 37 0.0013 42.3 2.3 22 98-119 168-189 (770)
227 2og2_A Putative signal recogni 21.2 41 0.0014 38.0 2.5 16 104-119 159-174 (359)
228 3lnc_A Guanylate kinase, GMP k 21.1 25 0.00087 36.0 0.7 16 104-119 29-44 (231)
229 2v26_A Myosin VI; calmodulin-b 21.0 37 0.0013 42.3 2.3 22 98-119 136-157 (784)
230 1lvg_A Guanylate kinase, GMP k 21.0 18 0.00063 36.5 -0.3 16 104-119 6-21 (198)
231 1xx6_A Thymidine kinase; NESG, 20.9 14 0.00047 38.0 -1.3 23 104-126 10-32 (191)
232 3pxi_A Negative regulator of g 20.9 34 0.0012 41.9 1.9 16 104-119 523-538 (758)
233 1ly1_A Polynucleotide kinase; 20.8 21 0.00073 34.3 0.1 15 104-118 4-18 (181)
234 2qen_A Walker-type ATPase; unk 20.7 33 0.0011 36.5 1.6 17 103-119 32-48 (350)
235 1rj9_A FTSY, signal recognitio 20.2 23 0.00079 38.9 0.2 17 103-119 103-119 (304)
236 1g8x_A Myosin II heavy chain f 20.1 39 0.0013 43.4 2.2 22 98-119 168-189 (1010)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=9.2e-85 Score=736.39 Aligned_cols=340 Identities=39% Similarity=0.555 Sum_probs=290.4
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEec---CceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECIN---NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTL 95 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~---~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~ 95 (1104)
...++|+|+||+||++..|...+....+.+.+ ..++.+. .+.|.||+||+++++|++||+.++.|+|+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 78 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIVT 78 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHHH
Confidence 45789999999999999998877666555544 3444432 35899999999999999999999999999
Q ss_pred HHhcCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhc-ccceEEEEeeEEEEecccccccCCCCCC
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDST 165 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLLs~~s~ 165 (1104)
++++|||+||||||||||||||||. ||+||++++||+.+... ....|.|++||+|||||+|+|||++...
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 158 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKV 158 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCC
T ss_pred HHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcC
Confidence 9999999999999999999999995 79999999999999764 4578999999999999999999999888
Q ss_pred CceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEe
Q 001305 166 PLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSAS 245 (1104)
Q Consensus 166 ~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~Sk 245 (1104)
++.+++++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+
T Consensus 159 ~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~sk 233 (365)
T 2y65_A 159 NLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE-----NQKKLSGK 233 (365)
T ss_dssp SBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT-----TCCEEEEE
T ss_pred CceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC-----CCCEeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999876432 23457899
Q ss_pred EEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCC
Q 001305 246 VNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPA 325 (1104)
Q Consensus 246 L~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs 325 (1104)
|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+
T Consensus 234 L~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~ 313 (365)
T 2y65_A 234 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPA 313 (365)
T ss_dssp EEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCB
T ss_pred EEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCc
Confidence 99999999999999999999999999999999999999999998767899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHH
Q 001305 326 RSHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLE 372 (1104)
Q Consensus 326 ~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe 372 (1104)
..+++||++||+||+|||.|+|+|.+|...+.++++++|++|+++|+
T Consensus 314 ~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 314 SFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp GGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred cCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888777655
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.5e-84 Score=731.81 Aligned_cols=345 Identities=39% Similarity=0.606 Sum_probs=289.5
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHH
Q 001305 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1104)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~s 96 (1104)
.+..++|+|+||+||++..|...+....+.+.. ..++.+.++.......++.|+||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 345789999999999999998877766666654 4567666543222334678999999999999999999999999999
Q ss_pred HhcCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC-CC
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS-TP 166 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s-~~ 166 (1104)
+++|||+||||||||||||||||+ ||+|+++++||..+.......|.|++||+|||||+|+|||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 999999999999999999999995 68999999999999988888999999999999999999998764 57
Q ss_pred ceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeE
Q 001305 167 LRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASV 246 (1104)
Q Consensus 167 L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL 246 (1104)
+.+++++.+|++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..... .+......|+|
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~~~skL 254 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL--DGENHIRVGKL 254 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-------CCCEEEEEE
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC--CCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998765421 22345678999
Q ss_pred EEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCC
Q 001305 247 NFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPAR 326 (1104)
Q Consensus 247 ~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~ 326 (1104)
+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+.
T Consensus 255 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~ 334 (372)
T 3b6u_A 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPAS 334 (372)
T ss_dssp EEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBG
T ss_pred EEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999988778999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHH
Q 001305 327 SHVEQSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQ 365 (1104)
Q Consensus 327 ~~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~Lq 365 (1104)
.+++||++||+||+|||+|+|+|.+|....+ +++++||
T Consensus 335 ~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~~ 372 (372)
T 3b6u_A 335 YNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372 (372)
T ss_dssp GGHHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred cCHHHHHHHHHHHHHHhhccccceecCChHH-HHHHhcC
Confidence 9999999999999999999999999987644 5666553
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.5e-83 Score=724.40 Aligned_cols=330 Identities=35% Similarity=0.549 Sum_probs=305.7
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhc
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN 99 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~ 99 (1104)
..++|+|+||+||++..|...+....+.+.++.++.+... ...+.|.||+||+++++|++||+.++.|+|+++++
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 78 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK-----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILN 78 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST-----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTT
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC-----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhC
Confidence 3679999999999999999888777888877777765432 12468999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCCCCcccC----------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCCCCce
Q 001305 100 GINSTFFAYGQTSSGKTYTMG----------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~----------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1104)
|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++....+.
T Consensus 79 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~ 158 (355)
T 1goj_A 79 GYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLP 158 (355)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCC
T ss_pred CCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCce
Confidence 999999999999999999995 689999999999987643 568999999999999999999999888999
Q ss_pred eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001305 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1104)
Q Consensus 169 i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1104)
+++++.+|++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~l 233 (355)
T 1goj_A 159 VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-----TGSAKSGQLFL 233 (355)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-----TTEEEEEEEEE
T ss_pred eEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC-----CCceeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876432 33467899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCC
Q 001305 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1104)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1104)
||||||||..++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+
T Consensus 234 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~ 313 (355)
T 1goj_A 234 VDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYN 313 (355)
T ss_dssp EECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGG
T ss_pred EECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECccccc
Confidence 99999999999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCHHH
Q 001305 329 VEQSRNTLLFASCAKEVATNAQVNVVMSDKA 359 (1104)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~a 359 (1104)
++||++||+||+|||.|+|+|.+|...++..
T Consensus 314 ~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 314 DAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp HHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred HHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 9999999999999999999999998876543
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-82 Score=715.68 Aligned_cols=330 Identities=46% Similarity=0.667 Sum_probs=286.0
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
.+++|+|+||+||++..|...++...+.+. +++++...+ ..+.|.||+||+++++|++||+.++.|+|++++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~-------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 74 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAI 74 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT-------SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC-------CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999876655444333 334443221 146899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC--CCceee
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS--TPLRLL 170 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s--~~L~i~ 170 (1104)
+|||+||||||||||||||||+ ||+||++++||+.+....+..|.|++||+|||||+|+|||++.. .++.++
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 154 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIR 154 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEE
T ss_pred cCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEE
Confidence 9999999999999999999996 79999999999999988889999999999999999999998754 579999
Q ss_pred eCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEe
Q 001305 171 DDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250 (1104)
Q Consensus 171 ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVD 250 (1104)
+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++...............|+|+|||
T Consensus 155 ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVD 234 (349)
T 1t5c_A 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234 (349)
T ss_dssp ETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEE
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999886543222223346789999999
Q ss_pred cCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC-CcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCCh
Q 001305 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR-NAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHV 329 (1104)
Q Consensus 251 LAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk-~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~ 329 (1104)
||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ ..||||||||||+||||+||||++|+|||||||+ ++
T Consensus 235 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~ 312 (349)
T 1t5c_A 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SF 312 (349)
T ss_dssp CCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CS
T ss_pred CCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CH
Confidence 99999999999999999999999999999999999998764 4699999999999999999999999999999997 58
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCHH
Q 001305 330 EQSRNTLLFASCAKEVATNAQVNVVMSDK 358 (1104)
Q Consensus 330 eETLsTLrFAsrAK~Ikn~p~vN~~~sd~ 358 (1104)
+||++||+||+|||.|+|+|.+|+.....
T Consensus 313 ~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 313 DETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 99999999999999999999999876543
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-83 Score=729.19 Aligned_cols=335 Identities=31% Similarity=0.483 Sum_probs=250.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
+..++|+|+|||||++..|...+...++...++.++.+.+.. .......|+||+||+++++|++||+.++.|+|++++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~--~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 95 (388)
T 3bfn_A 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR--NHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLL 95 (388)
T ss_dssp SCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHT
T ss_pred CCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCC--CCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhh
Confidence 557899999999999999976655555555566665554321 112246899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhc----ccceEEEEeeEEEEecccccccCCCCCCCce
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH----QEREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~----~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1104)
+|||+||||||||||||||||+ ||+||++.+||+.+... ....|.|++||+|||||+|+|||++...++.
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ 175 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCC
T ss_pred cCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCce
Confidence 9999999999999999999996 79999999999998753 3468999999999999999999999888999
Q ss_pred eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001305 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1104)
Q Consensus 169 i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1104)
+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .......|+|+|
T Consensus 176 ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~----~~~~~~~skL~l 251 (388)
T 3bfn_A 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL----APFRQREGKLYL 251 (388)
T ss_dssp CEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESS----TTCCEEEEEEEE
T ss_pred EEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccC----CCCceeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876432 122357899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCC
Q 001305 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1104)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1104)
||||||||..++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+|||||||+..+
T Consensus 252 VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~ 330 (388)
T 3bfn_A 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRF 330 (388)
T ss_dssp EECCCTTC--------------CCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGG
T ss_pred EECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcC-CCCCcCcccHHHHHHHHhhCCCccEEEEEEECCcccc
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCHHHH
Q 001305 329 VEQSRNTLLFASCAKEVATNAQVNVVMSDKAL 360 (1104)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~p~vN~~~sd~aL 360 (1104)
++||++||+||+|||+|+|+|.+|...+..++
T Consensus 331 ~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 331 YLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp HHHHHHHHHHHCSEEEEC--------------
T ss_pred HHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 99999999999999999999999998877765
No 6
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.7e-82 Score=712.78 Aligned_cols=332 Identities=38% Similarity=0.578 Sum_probs=271.2
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEec-CceEEecCCCc-----cCCCCCCccccCeecCCCCChHHHHHHHHHHHH
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECIN-NNSIVFKNSLL-----ERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~-~~tIv~~~~~~-----e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV 94 (1104)
.++|+|+||+||++.+|...+....+.+.. ..+|.+.++.. .....++.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 468999999999999998877766666654 34666654321 112345789999999999999999999999999
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhh-cccceEEEEeeEEEEecccccccCCCCCCCc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDT-HQEREFVLKFSAMEIYNESVRDLLSTDSTPL 167 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~-~~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L 167 (1104)
+++++|||+||||||||||||||||+ ||+||++++||+.+.. .....|.|++||+|||||+|+|||++ ..++
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 99999999999999999999999996 7999999999999974 45678999999999999999999984 4579
Q ss_pred eeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEE
Q 001305 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247 (1104)
Q Consensus 168 ~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~ 247 (1104)
.+++++.+|++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.... .+......|+|+
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~~~skl~ 238 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI---ENKEVIRVGKLN 238 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-------CEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeecc---CCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 233456789999
Q ss_pred EEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCC
Q 001305 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARS 327 (1104)
Q Consensus 248 fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~ 327 (1104)
|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++ .||||||||||+||||+||||++|+|||||||+..
T Consensus 239 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 317 (350)
T 2vvg_A 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPAST 317 (350)
T ss_dssp EEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999864 79999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCH
Q 001305 328 HVEQSRNTLLFASCAKEVATNAQVNVVMSD 357 (1104)
Q Consensus 328 ~~eETLsTLrFAsrAK~Ikn~p~vN~~~sd 357 (1104)
+++||++||+||+|||+|+|+|.+|..+.+
T Consensus 318 ~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 318 NYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp GHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred cHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999987654
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=3.1e-82 Score=714.78 Aligned_cols=331 Identities=38% Similarity=0.575 Sum_probs=277.0
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecC-ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINN-NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~-~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~sv 97 (1104)
...++|+|+|||||++..|...+....+.+... ..+.+...........+.|+||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 456799999999999999988777777777654 4555443211111234689999999999999999999999999999
Q ss_pred hcCCCcceeeeccCCCCCCcccC-----------------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccC
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMG-----------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL 160 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~-----------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 160 (1104)
++|||+||||||||||||||||+ ||+||++++||+.+.. ....|.|++||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 99999999999999999999995 7999999999999865 45789999999999999999999
Q ss_pred CCCC---CCceeeeCCC--CCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccC
Q 001305 161 STDS---TPLRLLDDPE--KGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG 235 (1104)
Q Consensus 161 s~~s---~~L~i~ed~~--~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~ 235 (1104)
++.. ..+.+++++. +|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... .
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~--~ 241 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT--I 241 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEEC--T
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEeccc--C
Confidence 8765 4688999874 7899999999999999999999999999999999999999999999999999875432 1
Q ss_pred CCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCce
Q 001305 236 AGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNAR 315 (1104)
Q Consensus 236 ~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSk 315 (1104)
.+......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCe
Confidence 2334567899999999999999999999999999999999999999999999975 579999999999999999999999
Q ss_pred eeEEEecCCCCCChHHHHHHHHHHHHHhhccccccccc
Q 001305 316 TAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1104)
Q Consensus 316 T~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1104)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999985
No 8
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=6.4e-82 Score=713.88 Aligned_cols=338 Identities=36% Similarity=0.551 Sum_probs=300.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHhcC
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNG 100 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G 100 (1104)
.++|+|+|||||++..|...+....+...+..++..... ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G 78 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK----DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDG 78 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECT----TSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTT
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCC----CCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcC
Confidence 468999999999999998766654444444445543221 1124689999999999999999999 69999999999
Q ss_pred CCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhccc-ceEEEEeeEEEEecccccccCCCCC---CCceee
Q 001305 101 INSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQE-REFVLKFSAMEIYNESVRDLLSTDS---TPLRLL 170 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLLs~~s---~~L~i~ 170 (1104)
||+||||||||||||||||+ ||+||++++||+.+..... ..|.|++||+|||||+|+|||++.. ..+.++
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~ 158 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 158 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEE
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEE
Confidence 99999999999999999995 7999999999999987654 6899999999999999999998753 579999
Q ss_pred eCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEe
Q 001305 171 DDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVD 250 (1104)
Q Consensus 171 ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVD 250 (1104)
+++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... ......|+|+|||
T Consensus 159 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~lVD 233 (369)
T 3cob_A 159 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-----TQAIARGKLSFVD 233 (369)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEEEE
T ss_pred ECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-----CCcEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999876432 3346789999999
Q ss_pred cCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChH
Q 001305 251 LAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVE 330 (1104)
Q Consensus 251 LAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~e 330 (1104)
||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 234 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp CCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTT-CSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 9999999999999999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHhhc
Q 001305 331 QSRNTLLFASCAKEVATNAQVNVVMSDKALVKQLQKELARLENEMKNLQ 379 (1104)
Q Consensus 331 ETLsTLrFAsrAK~Ikn~p~vN~~~sd~aLik~LqkEi~rLe~eL~~l~ 379 (1104)
||++||+||+|||.|+|+|.+|... +|+.+|+.+|..++
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~ 351 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWK 351 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHH
Confidence 9999999999999999999999876 34555555554443
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.1e-81 Score=702.10 Aligned_cols=312 Identities=41% Similarity=0.618 Sum_probs=292.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
...++|+|+|||||+++.|...++...+.+.++.++.+. .+.|.||+||+++++|++||+.+++|+|++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 74 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHh
Confidence 447899999999999999998888777888888887753 25899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhc-ccceEEEEeeEEEEecccccccCCCCCCCce
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDSTPLR 168 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLLs~~s~~L~ 168 (1104)
+|||+||||||||||||||||. ||+||++++||+.+... ....|.|++||+|||||+|+|||++...++.
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~ 154 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLS 154 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBC
T ss_pred CCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCce
Confidence 9999999999999999999996 69999999999999764 4678999999999999999999999888999
Q ss_pred eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001305 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1104)
Q Consensus 169 i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1104)
+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 155 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skl~l 229 (325)
T 1bg2_A 155 VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-----TEQKLSGKLYL 229 (325)
T ss_dssp EEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEE
T ss_pred EEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC-----CCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876432 33457899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCC
Q 001305 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1104)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1104)
||||||||..++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+
T Consensus 230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~ 308 (325)
T 1bg2_A 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308 (325)
T ss_dssp EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGG
T ss_pred EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcccc
Confidence 999999999999999999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhc
Q 001305 329 VEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 329 ~eETLsTLrFAsrAK~I 345 (1104)
++||++||+||+|||+|
T Consensus 309 ~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 309 ESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999976
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-81 Score=710.76 Aligned_cols=332 Identities=37% Similarity=0.592 Sum_probs=282.2
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
...++|+|+|||||++..|...+....+.+.++..+++..... ....+.|+||+||+++++|++||+.++.|+|++++
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l 97 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVL 97 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHHh
Confidence 4467899999999999999887777888888888887765432 22357899999999999999999999999999999
Q ss_pred cCCCcceeeeccCCCCCCcccC-----------------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG-----------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLS 161 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~-----------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs 161 (1104)
+|||+||||||||||||||||+ ||+||++++||+.+... +..|.|++||+|||||+|+|||+
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~ 176 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLS 176 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSC
T ss_pred CCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCC
Confidence 9999999999999999999995 68999999999998654 46899999999999999999998
Q ss_pred CCC-CCceeeeCC--CCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 162 TDS-TPLRLLDDP--EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 162 ~~s-~~L~i~ed~--~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
+.. ..+++++++ .++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... ..+.
T Consensus 177 ~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~--~~~~ 254 (373)
T 2wbe_C 177 TDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG--IEGE 254 (373)
T ss_dssp TTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTC--TTTC
T ss_pred CCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCC--CCCC
Confidence 764 468888874 56799999999999999999999999999999999999999999999999999875432 1233
Q ss_pred ceeEEEeEEEEecCCCccccccccc-cccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceee
Q 001305 239 SSILSASVNFVDLAGSERASQTLNA-GARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTA 317 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~-G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~ 317 (1104)
.....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+
T Consensus 255 ~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~ 333 (373)
T 2wbe_C 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKTS 333 (373)
T ss_dssp CEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC-SSCCCGGGCHHHHHTHHHHHSSSEEE
T ss_pred cceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC-CCcCccccchHHHHHHHHhCCCceEE
Confidence 4467899999999999999999887 999999999999999999999999875 57999999999999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHhhcccccccccccC
Q 001305 318 IICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVVMS 356 (1104)
Q Consensus 318 mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s 356 (1104)
|||||||+..+++||++||+||+|||+|+|+|.+|...+
T Consensus 334 mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999999998764
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2e-81 Score=709.85 Aligned_cols=330 Identities=35% Similarity=0.554 Sum_probs=277.9
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCC--------CChHHHHHHHHHH
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCE--------CPTRQVYEEAAKE 92 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~--------asQeeVYe~vv~p 92 (1104)
..+|+|+|||||++.+|...+..+.+.+.++.+++..+... ...++.|+||+||++. ++|++||+.+++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~--~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP--KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT--TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC--CCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 35799999999999999887777777666655544433211 2235789999999987 8999999999999
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC--------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG--------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLST 162 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~--------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1104)
+|+++++|||+||||||||||||||||+ ||+||++++||+.+.... ...|.|++||+|||||+|+|||++
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 9999999999999999999999999995 789999999999997653 468999999999999999999998
Q ss_pred CC-CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCcee
Q 001305 163 DS-TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSI 241 (1104)
Q Consensus 163 ~s-~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~ 241 (1104)
.. ..+++++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++..... ..+....
T Consensus 161 ~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~ 239 (366)
T 2zfi_A 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA-ETNITTE 239 (366)
T ss_dssp TTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECT-TTTCEEE
T ss_pred ccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccC-CCCccce
Confidence 65 579999999999999999999999999999999999999999999999999999999999998764431 1222345
Q ss_pred EEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC-----------CCcccCCCCchhhHHhhhcc
Q 001305 242 LSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG-----------RNAHIPYRDSKLTRILQNSL 310 (1104)
Q Consensus 242 ~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g-----------k~~hIPYRDSKLTrLLqdsL 310 (1104)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|
T Consensus 240 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsL 319 (366)
T 2zfi_A 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319 (366)
T ss_dssp EEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGS
T ss_pred eEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999752 35799999999999999999
Q ss_pred CCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhccccccccc
Q 001305 311 GGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1104)
Q Consensus 311 GGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1104)
|||++|+|||||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 320 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999998864
No 12
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=9.4e-81 Score=718.74 Aligned_cols=333 Identities=34% Similarity=0.538 Sum_probs=273.8
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCc-eEEecCCC-cc----------CCCCCCccccCeecCC-------C
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNN-SIVFKNSL-LE----------RSVYPPAYTFDRVFGC-------E 79 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~-tIv~~~~~-~e----------~s~~~~sF~FD~VF~~-------~ 79 (1104)
...++|+|+|||||++++|...+..+.+.+.... .+.+..+. .. .....+.|+||+||++ .
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 4457999999999999999887776666554432 23222111 00 1123578999999976 4
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhc----ccceEEEEeeEE
Q 001305 80 CPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH----QEREFVLKFSAM 149 (1104)
Q Consensus 80 asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~----~~~~f~V~vS~l 149 (1104)
++|++||+.++.|+|+++++|||+||||||||||||||||+ ||+||++++||+.|... .+..|.|+|||+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 89999999999999999999999999999999999999995 79999999999999764 357899999999
Q ss_pred EEecccccccCCCCC-----CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEE
Q 001305 150 EIYNESVRDLLSTDS-----TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRL 224 (1104)
Q Consensus 150 EIYNE~V~DLLs~~s-----~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI 224 (1104)
|||||+|+|||++.. ..|.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 999999999998732 359999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccCCCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCC------------
Q 001305 225 TIESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRN------------ 292 (1104)
Q Consensus 225 ~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~------------ 292 (1104)
+|++..... ..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.
T Consensus 275 ~v~~~~~~~-~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 275 MLKQIHHDL-ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEC--------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEeeccc-CCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 998764321 1223345789999999999999999999999999999999999999999999986432
Q ss_pred ---------cccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhcccccccccc
Q 001305 293 ---------AHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNVV 354 (1104)
Q Consensus 293 ---------~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~ 354 (1104)
.|||||||||||||||+||||++|+|||||||+ +++||++||+||+|||+|+|+|.+|.+
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999997 599999999999999999999999984
No 13
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.4e-81 Score=703.73 Aligned_cols=323 Identities=37% Similarity=0.557 Sum_probs=261.7
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCcc----------------CCCCCCccccCeecCCCCChH
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLE----------------RSVYPPAYTFDRVFGCECPTR 83 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e----------------~s~~~~sF~FD~VF~~~asQe 83 (1104)
-.++|+|+|||||++.+|...+....+.+.++.++++.+.... .......|.||+||+++++|+
T Consensus 8 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~ 87 (355)
T 3lre_A 8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQS 87 (355)
T ss_dssp ----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHH
T ss_pred ccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChH
Confidence 3578999999999999999988888888888887776543211 012245799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccc
Q 001305 84 QVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESV 156 (1104)
Q Consensus 84 eVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V 156 (1104)
+||+.++.|+|+++++|||+||||||||||||||||+ ||+|+++.+||..+.... ...|.|.+||+|||||+|
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i 167 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQI 167 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEE
Confidence 9999999999999999999999999999999999996 799999999999997754 568999999999999999
Q ss_pred cccCCCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCC
Q 001305 157 RDLLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGA 236 (1104)
Q Consensus 157 ~DLLs~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~ 236 (1104)
+|||++. .++.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++..... .
T Consensus 168 ~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~ 244 (355)
T 3lre_A 168 RDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA--S 244 (355)
T ss_dssp EESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTS--C
T ss_pred EECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCC--C
Confidence 9999864 579999999999999999999999999999999999999999999999999999999999999865432 2
Q ss_pred CCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC--CCcccCCCCchhhHHhhhccCCCc
Q 001305 237 GNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG--RNAHIPYRDSKLTRILQNSLGGNA 314 (1104)
Q Consensus 237 ~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g--k~~hIPYRDSKLTrLLqdsLGGNS 314 (1104)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 223456799999999999999999999999999999999999999999999875 346999999999999999999999
Q ss_pred eeeEEEecCCCCCChHHHHHHHHHHHHHhhc
Q 001305 315 RTAIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 315 kT~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1104)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.1e-80 Score=698.93 Aligned_cols=318 Identities=37% Similarity=0.578 Sum_probs=265.3
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCCcceEEecCc-eEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHH
Q 001305 18 AGQEERILVFVRLRPLNEKEYARNDVSDWECINNN-SIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1104)
Q Consensus 18 ~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~-tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~s 96 (1104)
...+++|+|+|||||++.+|...+...++.+..+. .+.+. .++.|.||+||+++++|++||+.++.|+|++
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~ 78 (344)
T 4a14_A 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAEDAGQEAVYQACVQPLLEA 78 (344)
T ss_dssp --CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecCcchhHHHHHHHHHHHHH
Confidence 46788999999999999999887776666655443 33321 1468999999999999999999999999999
Q ss_pred HhcCCCcceeeeccCCCCCCcccC------------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCCCC
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLSTDS 164 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~~s 164 (1104)
+++|||+||||||||||||||||. ||+||++++||+.+.......|.|++||+|||||+|+|||++..
T Consensus 79 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 158 (344)
T 4a14_A 79 FFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGT 158 (344)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCC
T ss_pred HHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcc
Confidence 999999999999999999999994 89999999999999988888999999999999999999998643
Q ss_pred --CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccC---CCCc
Q 001305 165 --TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLG---AGNS 239 (1104)
Q Consensus 165 --~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~---~~~~ 239 (1104)
.++.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++....... ....
T Consensus 159 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~ 238 (344)
T 4a14_A 159 ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238 (344)
T ss_dssp CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------
T ss_pred ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999986532111 1233
Q ss_pred eeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCC--CCcccCCCCchhhHHhhhccCCCceee
Q 001305 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKG--RNAHIPYRDSKLTRILQNSLGGNARTA 317 (1104)
Q Consensus 240 ~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~g--k~~hIPYRDSKLTrLLqdsLGGNSkT~ 317 (1104)
....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+||||++|+
T Consensus 239 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 318 (344)
T 4a14_A 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTV 318 (344)
T ss_dssp CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEE
T ss_pred ceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceE
Confidence 467899999999999999999999999999999999999999999999864 346999999999999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHh
Q 001305 318 IICTMSPARSHVEQSRNTLLFASCAK 343 (1104)
Q Consensus 318 mI~tISPs~~~~eETLsTLrFAsrAK 343 (1104)
|||||||+..+++||++||+||+|||
T Consensus 319 mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 319 MIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999996
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.5e-79 Score=690.03 Aligned_cols=320 Identities=35% Similarity=0.559 Sum_probs=258.5
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCC-----ccCCCCCCccccCeec--------CCCCChHHHHHHH
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSL-----LERSVYPPAYTFDRVF--------GCECPTRQVYEEA 89 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~-----~e~s~~~~sF~FD~VF--------~~~asQeeVYe~v 89 (1104)
+|+|+|||||++.+|...+..+.+.+.+.. +++.+.. ......++.|.||+|| ++.++|++||+.+
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANK-VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTE-EEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCe-EEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 799999999999999988777777665554 4443321 1112346789999999 4568999999999
Q ss_pred HHHHHHHHhcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhc--ccceEEEEeeEEEEecccccccCC
Q 001305 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLLS 161 (1104)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLLs 161 (1104)
+.|+|+++++|||+||||||||||||||||+ ||+|+++++||+.+... ....|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999995 79999999999998653 456899999999999999999998
Q ss_pred CCC--CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCc
Q 001305 162 TDS--TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNS 239 (1104)
Q Consensus 162 ~~s--~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~ 239 (1104)
+.. .++++++++..|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+...+. ..+..
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~ 239 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV-KSGTS 239 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT-TSCEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc-CCCCC
Confidence 764 579999999999999999999999999999999999999999999999999999999999998764321 22344
Q ss_pred eeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcC-----CCCcccCCCCchhhHHhhhccCCCc
Q 001305 240 SILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSK-----GRNAHIPYRDSKLTRILQNSLGGNA 314 (1104)
Q Consensus 240 ~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~-----gk~~hIPYRDSKLTrLLqdsLGGNS 314 (1104)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. ++..||||||||||+||||+|||||
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 56789999999999999999999999999999999999999999999975 3467999999999999999999999
Q ss_pred eeeEEEecCCCCCChHHHHHHHHHHHHHhh
Q 001305 315 RTAIICTMSPARSHVEQSRNTLLFASCAKE 344 (1104)
Q Consensus 315 kT~mI~tISPs~~~~eETLsTLrFAsrAK~ 344 (1104)
+|+|||||||+..+++||++||+||.+|+.
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999985
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-79 Score=690.12 Aligned_cols=317 Identities=33% Similarity=0.512 Sum_probs=255.0
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCc------cCCCCCCccccCeecCCCCChHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLL------ERSVYPPAYTFDRVFGCECPTRQVYEEAAK 91 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~------e~s~~~~sF~FD~VF~~~asQeeVYe~vv~ 91 (1104)
+..++|+|||||||++..|.. .+... +..+|.+..... ........|.||+||+ +++|++||+.+++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 457899999999999865532 22333 344555543321 1122345799999997 6899999999999
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccCCC
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLLST 162 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1104)
|+|+++++|||+||||||||||||||||+ ||+||++++||+.+.......|.|++||+|||||+|+|||++
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 174 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLST 174 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccc
Confidence 99999999999999999999999999996 799999999999999988899999999999999999999985
Q ss_pred CC------CCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCC
Q 001305 163 DS------TPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGA 236 (1104)
Q Consensus 163 ~s------~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~ 236 (1104)
.. ..+.+.+++ .|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... .
T Consensus 175 ~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~---~ 250 (359)
T 3nwn_A 175 LPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT---L 250 (359)
T ss_dssp STTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred ccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc---c
Confidence 32 346666765 5799999999999999999999999999999999999999999999999999876543 2
Q ss_pred CCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCcee
Q 001305 237 GNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNART 316 (1104)
Q Consensus 237 ~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1104)
.......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+|||||+|
T Consensus 251 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt 330 (359)
T 3nwn_A 251 SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 330 (359)
T ss_dssp ---CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred cCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccE
Confidence 23345789999999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHHHhhc
Q 001305 317 AIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1104)
+|||||||+..+++||++||+||+|||+|
T Consensus 331 ~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 331 VLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999986
No 17
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=7.3e-79 Score=691.68 Aligned_cols=318 Identities=34% Similarity=0.513 Sum_probs=262.4
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccC----CCCCCccccCeecCCCCChHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLER----SVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~----s~~~~sF~FD~VF~~~asQeeVYe~vv~plV 94 (1104)
...++|+|+|||||++.+|...+....+.+.++.++++..+.... ....+.|+||+||+++++|++||+.++.|+|
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 447899999999999999998887777777777776664332110 1123589999999999999999999999999
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccCC------------ChHhHHHHHHHHhhhc--ccceEEEEeeEEEEecccccccC
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMGG------------ITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLL 160 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~G------------Ii~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL 160 (1104)
+++++|||+||||||||||||||||.| |+|+++++||..+... ....|.|++||+|||||+|+|||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL 207 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence 999999999999999999999999964 8999999999998754 35689999999999999999999
Q ss_pred CCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCce
Q 001305 161 STDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240 (1104)
Q Consensus 161 s~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~ 240 (1104)
++. ..+.+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..
T Consensus 208 ~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------- 276 (387)
T 2heh_A 208 NKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG---------- 276 (387)
T ss_dssp TTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS----------
T ss_pred CCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC----------
Confidence 865 569999999999999999999999999999999999999999999999999999999999997641
Q ss_pred eEEEeEEEEecCCCcccccccc-ccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhc-cCCCceeeE
Q 001305 241 ILSASVNFVDLAGSERASQTLN-AGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS-LGGNARTAI 318 (1104)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~s-~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqds-LGGNSkT~m 318 (1104)
...|+|+|||||||||..+++. .+.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+ |||||+|+|
T Consensus 277 ~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~m 355 (387)
T 2heh_A 277 RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCM 355 (387)
T ss_dssp SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEEE
T ss_pred eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEEE
Confidence 3679999999999999988764 5678899999999999999999999974 579999999999999999 699999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHhhcccc
Q 001305 319 ICTMSPARSHVEQSRNTLLFASCAKEVATN 348 (1104)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ikn~ 348 (1104)
||||||+..+++||++||+||+|||+|++.
T Consensus 356 Ia~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 356 IATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999864
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-78 Score=678.23 Aligned_cols=314 Identities=33% Similarity=0.546 Sum_probs=268.2
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEe---cCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHH
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECI---NNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSV 97 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i---~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~sv 97 (1104)
.++|+|+|||||++..|........+.+. ++..+..... ..++.|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 76 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQEV-QALVTSC 76 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTTT-HHHHHHH
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHH
Confidence 57899999999999988654332222233 2233333221 1246899999999999999999985 8999999
Q ss_pred hcCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc-cceEEEEeeEEEEecccccccCCCCCC---Cc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ-EREFVLKFSAMEIYNESVRDLLSTDST---PL 167 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLLs~~s~---~L 167 (1104)
++|||+||||||||||||||||+ ||+|+++++||+.+.... +..|.|++||+|||||+|+|||++... .+
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999999996 699999999999997643 568999999999999999999986542 45
Q ss_pred eeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEE
Q 001305 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVN 247 (1104)
Q Consensus 168 ~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~ 247 (1104)
++.+++.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++.... ......|+|+
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~skL~ 231 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-----TGLRTTGKLN 231 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-----CCcEEEEEEE
Confidence 56678899999999999999999999999999999999999999999999999999999876432 3346789999
Q ss_pred EEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCC
Q 001305 248 FVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARS 327 (1104)
Q Consensus 248 fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~ 327 (1104)
|||||||||..++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+|||||||+..
T Consensus 232 lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~ 310 (330)
T 2h58_A 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEK 310 (330)
T ss_dssp EEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGG
T ss_pred EEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhcc
Q 001305 328 HVEQSRNTLLFASCAKEVA 346 (1104)
Q Consensus 328 ~~eETLsTLrFAsrAK~Ik 346 (1104)
+++||++||+||+|||+|+
T Consensus 311 ~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 311 NTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999986
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.2e-78 Score=683.30 Aligned_cols=321 Identities=31% Similarity=0.472 Sum_probs=256.9
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecC----ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHHHH
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECINN----NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLS 96 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~----~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~s 96 (1104)
.++|+|+|||||++..|...+....+...++ ..+.+.... ....++.|.||+||+++++|++||+.+ .|+|++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~ 80 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE--GRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQS 80 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHHH-HHHHHG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCC--CcccceeeecCEEECCCccHHHHHHHH-HHHHHH
Confidence 4789999999999998876543333322221 234433221 112246899999999999999999985 689999
Q ss_pred HhcCCCcceeeeccCCCCCCcccC----CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCCCC------
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTDS------ 164 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~s------ 164 (1104)
+++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++..
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 999999999999999999999994 899999999999987644 45899999999999999999998643
Q ss_pred -----CCceeeeCC-CCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 165 -----TPLRLLDDP-EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 165 -----~~L~i~ed~-~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
..+.+++++ .+|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~ 235 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH-----T 235 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT-----T
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC-----C
Confidence 456677665 45799999999999999999999999999999999999999999999999999876432 2
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CcccCCCCchhhHHhhhccCCCcee
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNART 316 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1104)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+||||++|
T Consensus 236 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 315 (349)
T 3t0q_A 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315 (349)
T ss_dssp CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEE
T ss_pred CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 33578999999999999999999999999999999999999999999998753 3599999999999999999999999
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHHHhhccccc
Q 001305 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNA 349 (1104)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p 349 (1104)
+|||||||+..+++||++||+||+|++.|+..+
T Consensus 316 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 316 LMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999998654
No 20
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.6e-78 Score=692.85 Aligned_cols=320 Identities=34% Similarity=0.508 Sum_probs=263.7
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCccC----CCCCCccccCeecCCCCChHHHHHHHHHHHH
Q 001305 19 GQEERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLER----SVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1104)
Q Consensus 19 ~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e~----s~~~~sF~FD~VF~~~asQeeVYe~vv~plV 94 (1104)
...++|+|+||+||++..|...+....+.+.++.++++..+.... ....+.|+||+||+++++|++||+.++.|+|
T Consensus 68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 347899999999999999998887777777777777664332110 1123589999999999999999999999999
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccCC------------ChHhHHHHHHHHhhhc--ccceEEEEeeEEEEecccccccC
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMGG------------ITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLL 160 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~G------------Ii~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL 160 (1104)
+++++|||+||||||||||||||||.| |+|+++++||..+... ....|.|++||+|||||+|+|||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 227 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 227 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECC
Confidence 999999999999999999999999964 8999999999998754 35689999999999999999999
Q ss_pred CCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCce
Q 001305 161 STDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSS 240 (1104)
Q Consensus 161 s~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~ 240 (1104)
++. ..+.+++|+.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 228 ~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------- 296 (410)
T 1v8k_A 228 NKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------- 296 (410)
T ss_dssp TTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS----------
T ss_pred CCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC----------
Confidence 864 569999999999999999999999999999999999999999999999999999999999997641
Q ss_pred eEEEeEEEEecCCCcccccccc-ccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhc-cCCCceeeE
Q 001305 241 ILSASVNFVDLAGSERASQTLN-AGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNS-LGGNARTAI 318 (1104)
Q Consensus 241 ~~~SkL~fVDLAGSER~~kt~s-~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqds-LGGNSkT~m 318 (1104)
...|+|+|||||||||..++++ .|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+ |||||+|+|
T Consensus 297 ~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~m 375 (410)
T 1v8k_A 297 RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCM 375 (410)
T ss_dssp SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEE
T ss_pred cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEE
Confidence 2689999999999999988764 5678899999999999999999999874 579999999999999999 699999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHhhcccccc
Q 001305 319 ICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1104)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1104)
||||||+..+++||++||+||+|||.|..+|.
T Consensus 376 Ia~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 376 IAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred EEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999987764
No 21
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-78 Score=685.09 Aligned_cols=321 Identities=32% Similarity=0.478 Sum_probs=273.8
Q ss_pred CEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCcc----CCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 23 RILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLLE----RSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 23 rIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~e----~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
.|+|+||+||++..|...+....+.+.++.++.+..+... .....+.|.||+||+++++|++||+.+++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 5899999999999999888888888888888877543211 011235899999999999999999999999999999
Q ss_pred c-CCCcceeeeccCCCCCCcccC-----------CChHhHHHHHHHHhhhc-ccceEEEEeeEEEEecccccccCCCCCC
Q 001305 99 N-GINSTFFAYGQTSSGKTYTMG-----------GITEYAIQDIYDYIDTH-QEREFVLKFSAMEIYNESVRDLLSTDST 165 (1104)
Q Consensus 99 ~-G~NatIfAYGQTGSGKTyTM~-----------GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLLs~~s~ 165 (1104)
+ ||||||||||||||||||||+ ||+|+++++||..+... .+..|.|++||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999994 68999999999999764 356899999999999999999998653
Q ss_pred CceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEe
Q 001305 166 PLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSAS 245 (1104)
Q Consensus 166 ~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~Sk 245 (1104)
.+.+++++.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+... ....|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~--------~~~~sk 231 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK--------NTSLGK 231 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT--------TEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC--------CcceeE
Confidence 577889999999999999999999999999999999999999999999999999999999986432 246799
Q ss_pred EEEEecCCCccccccccccc-cccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCC
Q 001305 246 VNFVDLAGSERASQTLNAGA-RLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSP 324 (1104)
Q Consensus 246 L~fVDLAGSER~~kt~s~G~-rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISP 324 (1104)
|+|||||||||..++++.|. +++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||
T Consensus 232 L~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-KNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 99999999999999988764 6889999999999999999999875 579999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhccccccccc
Q 001305 325 ARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1104)
Q Consensus 325 s~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1104)
+..+++||++||+||+|||+|+|.|..|.
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC---------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 99999999999999999999999766554
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-78 Score=684.53 Aligned_cols=319 Identities=34% Similarity=0.467 Sum_probs=246.9
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCCcc-eEE------ecCceEEecCCCc--------cCCCCCCccccCeecCCCCChHH
Q 001305 20 QEERILVFVRLRPLNEKEYARNDVSD-WEC------INNNSIVFKNSLL--------ERSVYPPAYTFDRVFGCECPTRQ 84 (1104)
Q Consensus 20 ~eerIrV~VRVRPl~~~E~~~~~~~~-~~~------i~~~tIv~~~~~~--------e~s~~~~sF~FD~VF~~~asQee 84 (1104)
-.++|+|+|||||+++.|...+.... +.. .++.+|.+..+.. ......+.|+||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 35789999999999999976542211 111 2345565543210 01123468999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC----------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEe
Q 001305 85 VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG----------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIY 152 (1104)
Q Consensus 85 VYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~----------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIY 152 (1104)
||+.+ .|+|+++++|||+||||||||||||||||+ ||+||++++||+.+.... ...|.|++||+|||
T Consensus 100 Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 99996 589999999999999999999999999996 699999999999997643 56899999999999
Q ss_pred cccccccCCCCC-----CCceeeeC--CCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEE
Q 001305 153 NESVRDLLSTDS-----TPLRLLDD--PEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLT 225 (1104)
Q Consensus 153 NE~V~DLLs~~s-----~~L~i~ed--~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~ 225 (1104)
||+|+|||++.. ..+.++++ +.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 999999998752 35778887 67899999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccCCCCceeEEEeEEEEecCCCcccccccccc----ccccccccchhhHHHHHHHHHHhcCCCCcccCCCCch
Q 001305 226 IESSAREYLGAGNSSILSASVNFVDLAGSERASQTLNAG----ARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSK 301 (1104)
Q Consensus 226 Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~G----~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSK 301 (1104)
|++.... ......|+|+|||||||||+.++++.| .|++|+.+||+||++||+||.+|+.+ ..||||||||
T Consensus 259 v~~~~~~-----~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSk 332 (376)
T 2rep_A 259 ISGEHSS-----RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHVPYRNSK 332 (376)
T ss_dssp EEEEESS-----SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCCCGGGSH
T ss_pred EEEEecC-----CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCccCCcCCH
Confidence 9876432 234578999999999999999999999 99999999999999999999999975 5799999999
Q ss_pred hhHHhhhccCCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhc
Q 001305 302 LTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 302 LTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1104)
||+||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 333 LT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999863
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.6e-78 Score=682.22 Aligned_cols=319 Identities=33% Similarity=0.506 Sum_probs=256.9
Q ss_pred CCCCCCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCcc------CCCCCCccccCeecCCCCChHHHHHHH
Q 001305 17 TAGQEERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLE------RSVYPPAYTFDRVFGCECPTRQVYEEA 89 (1104)
Q Consensus 17 ~~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~e------~s~~~~sF~FD~VF~~~asQeeVYe~v 89 (1104)
+.+..++|+|+|||||+...+ ...+.+. +..++.+...... .......|.||+||+ +++|++||+.+
T Consensus 18 ~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 18 GSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETV 91 (358)
T ss_dssp -----CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHH
T ss_pred CCCCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHH
Confidence 356688999999999987532 2334443 3445555432111 112245799999995 89999999999
Q ss_pred HHHHHHHHhcCCCcceeeeccCCCCCCcccC---------CChHhHHHHHHHHhhhcccceEEEEeeEEEEecccccccC
Q 001305 90 AKEVTLSVVNGINSTFFAYGQTSSGKTYTMG---------GITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDLL 160 (1104)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 160 (1104)
++|+|+++++|||+||||||||||||||||+ ||+|+++++||+.+....+..|.|++||+|||||+|+|||
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 171 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLL 171 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECc
Confidence 9999999999999999999999999999994 8999999999999998888899999999999999999999
Q ss_pred CCC------CCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeeccccc
Q 001305 161 STD------STPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYL 234 (1104)
Q Consensus 161 s~~------s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~ 234 (1104)
++. ..++.+++++ .|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.....
T Consensus 172 ~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~- 249 (358)
T 2nr8_A 172 STLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL- 249 (358)
T ss_dssp SSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-----
T ss_pred CCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC-
Confidence 863 3578999998 78999999999999999999999999999999999999999999999999998765431
Q ss_pred CCCCceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCc
Q 001305 235 GAGNSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNA 314 (1104)
Q Consensus 235 ~~~~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNS 314 (1104)
.......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++..||||||||||+||||+|||||
T Consensus 250 --~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 250 --SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSS
T ss_pred --CCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 223456899999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred eeeEEEecCCCCCChHHHHHHHHHHHHHhhc
Q 001305 315 RTAIICTMSPARSHVEQSRNTLLFASCAKEV 345 (1104)
Q Consensus 315 kT~mI~tISPs~~~~eETLsTLrFAsrAK~I 345 (1104)
+|+|||||||+..+++||++||+||+|||.|
T Consensus 328 kt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 328 NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.4e-78 Score=682.31 Aligned_cols=319 Identities=33% Similarity=0.496 Sum_probs=261.3
Q ss_pred CCEEEEEEeCCCCh-hhhhcCCCcceEEe--c----CceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHH
Q 001305 22 ERILVFVRLRPLNE-KEYARNDVSDWECI--N----NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1104)
Q Consensus 22 erIrV~VRVRPl~~-~E~~~~~~~~~~~i--~----~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV 94 (1104)
++|+|+|||||++. .|.. ....+.+. + ..++.+.... .....+.|.||+||+++++|++||+.+ .|+|
T Consensus 3 ~nIrV~vRvRP~~~~~e~~--~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv 77 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLENS--DTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLV 77 (347)
T ss_dssp CEEEEEEEECCCCTTTCCC--TTEEEEECCCBTTTTBEEEEEEEGG--GTTCEEEEEESEEECTTCCHHHHHHHH-HHHH
T ss_pred CCeEEEEEeCCCCcccccC--CCceEEEecccCCCCceEEEEecCC--CCcCceEEeeCEEECCCCCHHHHHHHH-HHHH
Confidence 68999999999987 4422 22222221 1 1234433221 112346899999999999999999985 6899
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccC----CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCCCCC---
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTDST--- 165 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~s~--- 165 (1104)
+++++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 157 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE 157 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccc
Confidence 99999999999999999999999995 899999999999997643 468999999999999999999987643
Q ss_pred ------CceeeeC-CCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 166 ------PLRLLDD-PEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 166 ------~L~i~ed-~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
.+.++++ ..++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... .
T Consensus 158 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~ 232 (347)
T 1f9v_A 158 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK-----T 232 (347)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-------
T ss_pred ccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC-----C
Confidence 4667665 467899999999999999999999999999999999999999999999999999876432 2
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CcccCCCCchhhHHhhhccCCCcee
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNART 316 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1104)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+||||++|
T Consensus 233 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 312 (347)
T 1f9v_A 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 312 (347)
T ss_dssp CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEE
T ss_pred CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccE
Confidence 33578999999999999999999999999999999999999999999998764 4799999999999999999999999
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHHHhhcccccc
Q 001305 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1104)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1104)
+|||||||+..+++||++||+||+||+.|+..++
T Consensus 313 ~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 313 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999999999998764
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.5e-76 Score=678.33 Aligned_cols=321 Identities=35% Similarity=0.532 Sum_probs=266.3
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEecCceEEecCCCc--cCCCCCCccccCeecCCCCChHHHHHHHHHHHHHHHh
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECINNNSIVFKNSLL--ERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i~~~tIv~~~~~~--e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL 98 (1104)
.++|+|||||||+.+.|...+ .+.|...++.++.+..... ......+.|+||+||+++++|++||+.+ .|+|++++
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~plv~~~l 135 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV-SPLIQSAL 135 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSC-BCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTT-HHHHHHHH
T ss_pred CCCEEEEEEcCCCCchhccCc-ceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHH-HHHHHHHH
Confidence 468999999999999886543 4556777777777654322 1122357899999999999999999865 69999999
Q ss_pred cCCCcceeeeccCCCCCCcccC------CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCCCCCC--ce
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG------GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLSTDSTP--LR 168 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~~s~~--L~ 168 (1104)
+|||+||||||||||||||||. ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++...+ ++
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 9999999999999999999996 899999999999997643 5689999999999999999999877665 45
Q ss_pred eeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEE
Q 001305 169 LLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNF 248 (1104)
Q Consensus 169 i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~f 248 (1104)
+.+++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~~~~~~~kL~l 290 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-----KQEISVGSINL 290 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT-----TTEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC-----CCCEEEEEEEE
Confidence 5578889999999999999999999999999999999999999999999999999999876432 33467899999
Q ss_pred EecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCC
Q 001305 249 VDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSH 328 (1104)
Q Consensus 249 VDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~ 328 (1104)
||||||||.. .|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+
T Consensus 291 VDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~ 365 (412)
T 3u06_A 291 VDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDC 365 (412)
T ss_dssp EECCCCCC--------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGG
T ss_pred EECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhh
Confidence 9999999974 4689999999999999999999999974 6799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccc-ccccc
Q 001305 329 VEQSRNTLLFASCAKEVATN-AQVNV 353 (1104)
Q Consensus 329 ~eETLsTLrFAsrAK~Ikn~-p~vN~ 353 (1104)
++||++||+||+|++.|+.. ++.|.
T Consensus 366 ~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 366 FQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999854 44443
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.5e-76 Score=664.91 Aligned_cols=307 Identities=30% Similarity=0.449 Sum_probs=242.0
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCCcceEEec---CceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHH
Q 001305 16 LTAGQEERILVFVRLRPLNEKEYARNDVSDWECIN---NNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKE 92 (1104)
Q Consensus 16 ~~~~~eerIrV~VRVRPl~~~E~~~~~~~~~~~i~---~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~p 92 (1104)
|..+..++|+|+|||||++..|. .++...+.+.. ...+.+. .+.|.||+||+++++|++||+.++.|
T Consensus 16 m~~~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~~---------~~~F~FD~Vf~~~~sQ~~Vy~~~~~p 85 (344)
T 3dc4_A 16 MEGAKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQALILP 85 (344)
T ss_dssp ---CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEET---------TEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CCCCCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEec---------CcEEEcceEECCCCCHHHHHHhhccc
Confidence 34466789999999999988763 33444444432 3344332 35899999999999999999999999
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC------------CChHhHHHHHHHHhhhccc---ceEEEEeeEEEEeccccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG------------GITEYAIQDIYDYIDTHQE---REFVLKFSAMEIYNESVR 157 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~------------GIi~rai~dLF~~I~~~~~---~~f~V~vS~lEIYNE~V~ 157 (1104)
+|+++++|||+||||||||||||||||. ||+||++++||+.+..... ..|.|++||+|||||+|+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~ 165 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPF 165 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEE
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeE
Confidence 9999999999999999999999999994 8999999999999976543 469999999999999999
Q ss_pred ccCCCCCCCceeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCC
Q 001305 158 DLLSTDSTPLRLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAG 237 (1104)
Q Consensus 158 DLLs~~s~~L~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~ 237 (1104)
|||++...... .+..+.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 166 DLL~~~~~~~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------- 231 (344)
T 3dc4_A 166 DLLGSTPHMPM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------- 231 (344)
T ss_dssp ETTSSCTTSBC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------
T ss_pred EccCCCCCCcc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------
Confidence 99987654211 1233568999999999999999999999999999999999999999999999652
Q ss_pred CceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceee
Q 001305 238 NSSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTA 317 (1104)
Q Consensus 238 ~~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~ 317 (1104)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++|+
T Consensus 232 ---~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~lLqdsLgGnskt~ 307 (344)
T 3dc4_A 232 ---THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG-HTVIPYRDSVLTTVLQASLTAQSYLT 307 (344)
T ss_dssp ---SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTT-CSSCCGGGSHHHHHTTTTSSTTCEEE
T ss_pred ---CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhcc-CCcCCccccHHHHHHHHHhCCCCEEE
Confidence 14689999999999999999999999999999999999999999999986 56999999999999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHhhcccccc
Q 001305 318 IICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1104)
Q Consensus 318 mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1104)
|||||||+..+++||++||+||+||++....+.
T Consensus 308 mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 308 FLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999876654
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-76 Score=678.57 Aligned_cols=321 Identities=33% Similarity=0.502 Sum_probs=264.3
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEe--cC----ceEEecCCCccCCCCCCccccCeecCCCCChHHHHHHHHHHHH
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECI--NN----NSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEEAAKEVT 94 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i--~~----~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~vv~plV 94 (1104)
.++|+|||||||+...+... +...+.+. ++ .++.+... ......+.|.||+||+++++|++||+.+ .|+|
T Consensus 58 kgnIrV~vRvRP~~~~~e~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv 133 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLV 133 (403)
T ss_dssp HCSEEEEEEECCCCTTTSCS-CCTTEEECCCBTTTTBEEEEEEEC--SSSCEEEEEEESEEECTTCCHHHHHHHH-HHHH
T ss_pred CCCeEEEEEeCCCCCccccc-CCCeeEEeeccCCCCceEEEEecC--CCCcCceEEEcCEEECCCCchHHHHHHH-HHHH
Confidence 36899999999998763221 22222221 11 12322211 1112246899999999999999999985 5899
Q ss_pred HHHhcCCCcceeeeccCCCCCCcccC----CChHhHHHHHHHHhhhc--ccceEEEEeeEEEEecccccccCCCCC----
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTH--QEREFVLKFSAMEIYNESVRDLLSTDS---- 164 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLLs~~s---- 164 (1104)
+++++|||+||||||||||||||||+ ||+|+++++||..+... ....|.|++||+|||||+|+|||++..
T Consensus 134 ~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 134 QSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999994 89999999999999764 356899999999999999999998754
Q ss_pred -----CCceeeeCC-CCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 165 -----TPLRLLDDP-EKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 165 -----~~L~i~ed~-~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
..+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.... .
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-----~ 288 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-----T 288 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETT-----T
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecC-----C
Confidence 245666665 46799999999999999999999999999999999999999999999999999876432 2
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCC--CcccCCCCchhhHHhhhccCCCcee
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGR--NAHIPYRDSKLTRILQNSLGGNART 316 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk--~~hIPYRDSKLTrLLqdsLGGNSkT 316 (1104)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+|||||+|
T Consensus 289 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt 368 (403)
T 4etp_A 289 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 368 (403)
T ss_dssp CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEE
T ss_pred CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceE
Confidence 33568999999999999999999999999999999999999999999998753 3599999999999999999999999
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHHHhhcccccc
Q 001305 317 AIICTMSPARSHVEQSRNTLLFASCAKEVATNAQ 350 (1104)
Q Consensus 317 ~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 350 (1104)
+|||||||+..+++||++||+||+|++.|+..++
T Consensus 369 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 369 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999988764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=7.3e-73 Score=687.39 Aligned_cols=320 Identities=30% Similarity=0.505 Sum_probs=250.0
Q ss_pred CCCCEEEEEEeC----CCChhhhhcC-CCcceEE------ecCceEEecCCCccCCCCCCccccCeecCCCCChHHHHHH
Q 001305 20 QEERILVFVRLR----PLNEKEYARN-DVSDWEC------INNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTRQVYEE 88 (1104)
Q Consensus 20 ~eerIrV~VRVR----Pl~~~E~~~~-~~~~~~~------i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQeeVYe~ 88 (1104)
--++++|||||| |....|...+ +...++. ...+.|++..+. ......+.|+||+||+++++|++||+.
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~fd~vf~~~~~q~~v~~~ 450 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLRFLFDKIFEREQSNDLVFEE 450 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-TTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-CCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence 356899999999 4444343322 2222222 223445544332 222335789999999999999999997
Q ss_pred HHHHHHHHHhcCCCcceeeeccCCCCCCcccC----CChHhHHHHHHHHhhhcc--cceEEEEeeEEEEecccccccCCC
Q 001305 89 AAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG----GITEYAIQDIYDYIDTHQ--EREFVLKFSAMEIYNESVRDLLST 162 (1104)
Q Consensus 89 vv~plV~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1104)
+ .|+|+++++|||+||||||||||||||||. ||+||++++||+.|.... ...|.|++||+|||||+|+|||++
T Consensus 451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~ 529 (715)
T 4h1g_A 451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP 529 (715)
T ss_dssp T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred H-HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence 6 589999999999999999999999999996 799999999999997644 468999999999999999999987
Q ss_pred CC---CCceeeeCCC-CCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCC
Q 001305 163 DS---TPLRLLDDPE-KGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGN 238 (1104)
Q Consensus 163 ~s---~~L~i~ed~~-~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~ 238 (1104)
.. ..+.++++.. ++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .
T Consensus 530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~-----~ 604 (715)
T 4h1g_A 530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL-----T 604 (715)
T ss_dssp CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT-----T
T ss_pred CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC-----C
Confidence 53 3566666554 4599999999999999999999999999999999999999999999999999876432 3
Q ss_pred ceeEEEeEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeE
Q 001305 239 SSILSASVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAI 318 (1104)
Q Consensus 239 ~~~~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~m 318 (1104)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|
T Consensus 605 ~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~ 684 (715)
T 4h1g_A 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLM 684 (715)
T ss_dssp CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEE
T ss_pred CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEE
Confidence 34578999999999999999999999999999999999999999999998766789999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHhhcc
Q 001305 319 ICTMSPARSHVEQSRNTLLFASCAKEVA 346 (1104)
Q Consensus 319 I~tISPs~~~~eETLsTLrFAsrAK~Ik 346 (1104)
||||||+..+++||++||+||+|||+|+
T Consensus 685 i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 685 FVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEECCChhhHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999986
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=2.5e-29 Score=236.59 Aligned_cols=99 Identities=41% Similarity=0.668 Sum_probs=95.1
Q ss_pred cccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhccccc
Q 001305 270 GSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNA 349 (1104)
Q Consensus 270 g~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p 349 (1104)
+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||.|+++|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999998767899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHH
Q 001305 350 QVNVVMSDKALVKQLQKEL 368 (1104)
Q Consensus 350 ~vN~~~sd~aLik~LqkEi 368 (1104)
.+|...++.+++++|++|+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999998886
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=2.2e-27 Score=229.51 Aligned_cols=98 Identities=42% Similarity=0.676 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHHHHHHHHHHHHhhccccccccc
Q 001305 274 NRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVATNAQVNV 353 (1104)
Q Consensus 274 NkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 353 (1104)
|+||++||+||.+|+.++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999988778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 001305 354 VMSDKALVKQLQKELARL 371 (1104)
Q Consensus 354 ~~sd~aLik~LqkEi~rL 371 (1104)
..++.++++++++++.++
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999888877776655544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.3e-23 Score=221.59 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=172.2
Q ss_pred CCEEEEEEeCCCC-hhhhhcCCCcceEEecCceEEecCCCccCCCCCCccccCeecCCCCChH--HHHHHHHHHHHHHHh
Q 001305 22 ERILVFVRLRPLN-EKEYARNDVSDWECINNNSIVFKNSLLERSVYPPAYTFDRVFGCECPTR--QVYEEAAKEVTLSVV 98 (1104)
Q Consensus 22 erIrV~VRVRPl~-~~E~~~~~~~~~~~i~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~asQe--eVYe~vv~plV~svL 98 (1104)
|+|||||||||.. +.. ..+... +..|.+. . ..+.|.||+||++.+.|+ +||++ +.+++++++
T Consensus 24 GnIRVFcrvrp~~~p~~------~~v~y~-~~~I~v~-~------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scL 88 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLPEN------LLFDYE-NGVITQG-L------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCL 88 (298)
T ss_dssp TCCEEEEEECGGGSCTT------EEEETT-TTEEEET-T------TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHH
T ss_pred CceEEEEEeccccCCcc------ceeecC-ccceeec-C------CCceEEeeeEECccccccHHHHHHH-HHHHHHHHH
Confidence 7899999999964 211 111122 2234432 2 126999999999999999 99999 599999999
Q ss_pred c-CCCcceeeeccCCCCCCcccCCChHhHHHHHHHHhhh-cccceEEEEeeEEEEe-cccccccCCCCC--CCceeeeCC
Q 001305 99 N-GINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDT-HQEREFVLKFSAMEIY-NESVRDLLSTDS--TPLRLLDDP 173 (1104)
Q Consensus 99 ~-G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~-~~~~~f~V~vS~lEIY-NE~V~DLLs~~s--~~L~i~ed~ 173 (1104)
+ |||+||||||||||||| |+++..+|...+. .. ..|.+.++|+||| ||.++|||.... ..+.|.-+.
T Consensus 89 d~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~ 160 (298)
T 2o0a_A 89 NQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKF 160 (298)
T ss_dssp HTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEEE
T ss_pred hCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecC
Confidence 9 99999999999999999 9999999987644 33 7899999999999 999999996332 356777778
Q ss_pred CCCeEecCceEEEeCC-HHHHHHHHHHHHhhccccccccCCCCCCceEEEEEEEEeecccccCCCCceeEEEeEEEEecC
Q 001305 174 EKGTVVERLTEETLTD-MSHLMELLAVCEAQRQIGETALNETSSRSHQILRLTIESSAREYLGAGNSSILSASVNFVDLA 252 (1104)
Q Consensus 174 ~~gv~V~gLtev~V~S-~eE~l~LL~~g~~~R~~asT~~N~~SSRSHaIftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLA 252 (1104)
.++.+|.|++.+.|.+ .+|+..++..+.. +.+|. +.-.|+.+.+...+....+ +.....-.++|+.+.
T Consensus 161 ~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~--~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 161 EKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDG--NNDPVPVDFYFIELN 229 (298)
T ss_dssp CSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC---------CCCEEEEEEEEC
T ss_pred CCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccc--cCCCCceEEEEEEeC
Confidence 8999999999999999 8988887722111 12222 3355666666542221111 111112245666653
Q ss_pred CCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCCCCCChHHH
Q 001305 253 GSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHVEQS 332 (1104)
Q Consensus 253 GSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISPs~~~~eET 332 (1104)
-. ++...|.+. +..+ -+-.|+++-+|+.-|- ..+.++++++.-... .
T Consensus 230 ~~--------------------~~~~~l~~~---~~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~----~ 276 (298)
T 2o0a_A 230 NL--------------------KSIEQFDKS---IFKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN----V 276 (298)
T ss_dssp SH--------------------HHHHHHHHH---HHTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG----H
T ss_pred CH--------------------HHHHHHHhh---cccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc----h
Confidence 22 123334442 2233 2345788888887763 467899999975432 2
Q ss_pred HHHHHHHHHHhhcccccc
Q 001305 333 RNTLLFASCAKEVATNAQ 350 (1104)
Q Consensus 333 LsTLrFAsrAK~Ikn~p~ 350 (1104)
-.-|..+++.+.+.|...
T Consensus 277 ~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 277 NKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHhhcccCccc
Confidence 336788888877776543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.79 E-value=0.054 Score=53.87 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=35.8
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..++||.....+..|..+++.+ ..++.++--.....++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 3568888766555677777654 555554433334567889999999999874
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.33 E-value=0.11 Score=52.28 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=33.7
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCC-CcceeeeccCCCCCCcccC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGI-NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1104)
.++||.+......+..+++.+ ..++...-.+. +..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 467887666555566677643 44444433332 2678999999999999864
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.13 E-value=0.12 Score=56.97 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=34.4
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCCh
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1104)
++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHH
Confidence 677765544434555665 34455554433345678899999999999986543
No 35
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.42 E-value=0.32 Score=51.24 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=22.2
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-||.+|+|||+.+
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 47899988744333333322 22222 33567889999999999865
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.20 E-value=0.64 Score=48.87 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=34.0
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHH-----HHHhcCCCcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVT-----LSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV-----~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..+.|+.+.+.+...+.+.+.+ ..+. ..+-......|+-||++|+|||+.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 3678999999887766665533 2211 11111234458999999999998863
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.49 E-value=0.74 Score=44.36 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 334444555666778999999999999874
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.29 E-value=0.65 Score=50.40 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=30.7
Q ss_pred cCeecCCCCChHHHHHHHHHHHHHHHhc--CCC--cceeeeccCCCCCCccc
Q 001305 72 FDRVFGCECPTRQVYEEAAKEVTLSVVN--GIN--STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 72 FD~VF~~~asQeeVYe~vv~plV~svL~--G~N--atIfAYGQTGSGKTyTM 119 (1104)
||.+|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444443333456666777777766553 222 36788999999999865
No 39
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.55 E-value=0.72 Score=50.06 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=29.5
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..|+|+.+++. ..+... +...++.+....|+-||++|+|||+.+
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 46889998874 333332 223344444456999999999999875
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.61 E-value=1.1 Score=48.67 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 67 PPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
...|+||.+... ..+...+.. +..++..- .+....++-||++|+|||+.+..
T Consensus 5 ~~~~~f~~fv~g-~~~~~a~~~-~~~~~~~~-~~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 5 NPKYTLENFIVG-EGNRLAYEV-VKEALENL-GSLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CTTCCSSSCCCC-TTTHHHHHH-HHHHHHTT-TTSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCCCcccCCCC-CcHHHHHHH-HHHHHhCc-CCCCCeEEEECCCCCcHHHHHHH
Confidence 357899987632 233444443 33333221 11345789999999999998743
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=77.02 E-value=1.3 Score=44.76 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=29.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.++||.+++. ..+..++..+ . ..+..+....|+-||++|+|||+.+..
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~l-~---~~~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 24 DETFTSYYPA-AGNDELIGAL-K---SAASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp TCSTTTSCC---CCHHHHHHH-H---HHHHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred CCChhhccCC-CCCHHHHHHH-H---HHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 4677776663 2234455432 2 222234567789999999999988643
No 42
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.17 E-value=1.4 Score=51.32 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=50.5
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhc--CC--CcceeeeccCCCCCCcccC----------------------
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG---------------------- 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~---------------------- 120 (1104)
..-+||.|-|-+..-+++.+.+..|+.. ..+. |. --.|+-||+.|+|||++..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 3568999988777767777777777752 3332 33 3568999999999998862
Q ss_pred -CChHhHHHHHHHHhhhcc
Q 001305 121 -GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 121 -GIi~rai~dLF~~I~~~~ 138 (1104)
|-....++.+|.......
T Consensus 256 vGese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 455677888887665543
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=75.87 E-value=0.87 Score=44.02 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 334444455667788999999999998764
No 44
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.43 E-value=0.67 Score=49.05 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=32.6
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-----HHhcCCCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-----SVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-----svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+.|+.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3688999988655444454444333221 110134456899999999999875
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.62 E-value=1.3 Score=48.55 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=31.3
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCc--ceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINS--TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~Na--tIfAYGQTGSGKTyTM 119 (1104)
.+.||.+.+ ++.+... ...++..+..|... .++-||++|+|||+.+
T Consensus 40 ~~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 566888777 3444333 23445555566654 7999999999999876
No 46
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.59 E-value=0.65 Score=48.58 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=29.8
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHH-HHHhcCC----CcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVT-LSVVNGI----NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV-~svL~G~----NatIfAYGQTGSGKTyTM~ 120 (1104)
..++||.|.+.+.....+-+ +...+- ..++.++ ...++-||++|+|||+.+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 46789998876543333322 222111 1222222 2238999999999998873
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.31 E-value=1 Score=48.90 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=33.3
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHh----cCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVV----NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL----~G~NatIfAYGQTGSGKTyTM 119 (1104)
.++||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 567888888665555566555544321 111 123456899999999999875
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.11 E-value=0.84 Score=50.95 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 87 EEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 87 e~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+..-+...+-.|...+|+-||++|+|||.++
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333333444445788889999999999999885
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.94 E-value=1.2 Score=51.62 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=48.8
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc--CC--CcceeeeccCCCCCCcccC-----------------------
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~----------------------- 120 (1104)
.-+||-|-|-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||++..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 467888888776666677766666643 3333 33 3459999999999998862
Q ss_pred CChHhHHHHHHHHhhhcc
Q 001305 121 GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1104)
|-.+..++.+|.......
T Consensus 248 Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 555678888988765543
No 50
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.98 E-value=2.8 Score=46.12 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=32.9
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhcCC---CcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI---NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~---NatIfAYGQTGSGKTyTM 119 (1104)
..+||.|.|-+..-+.+.+.+..|+.. .++.|. ...|+-||++|+|||+.+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 457888888655444555555444432 333442 246899999999999876
No 51
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.94 E-value=1.8 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=18.4
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
......|+-||++|+|||+.+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHH
Confidence 5566789999999999998763
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.58 E-value=1.9 Score=50.14 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=49.6
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhc--CC--CcceeeeccCCCCCCcccC----------------------
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG---------------------- 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~---------------------- 120 (1104)
...+||.|-|-+..-+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||++..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 3567898888776666777777666653 3343 33 3579999999999998862
Q ss_pred -CChHhHHHHHHHHhhhcc
Q 001305 121 -GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 121 -GIi~rai~dLF~~I~~~~ 138 (1104)
|-....++.+|.......
T Consensus 256 ~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHE 274 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 445667888888765543
No 53
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.09 E-value=7.5 Score=45.32 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=49.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc--CC--CcceeeeccCCCCCCcccC-----------------------
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~----------------------- 120 (1104)
.-+||.|=|-+.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||.+..
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 467888887666666677777666642 2332 32 3579999999999998761
Q ss_pred CChHhHHHHHHHHhhhcc
Q 001305 121 GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1104)
|-.+..++.+|.......
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 556778899998776544
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=67.96 E-value=2.5 Score=48.74 Aligned_cols=52 Identities=29% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCCccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 66 YPPAYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 66 ~~~sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
....|+||...... .+...+.. +..++.. .|....++-||++|+|||+.+..
T Consensus 98 l~~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 98 LNPDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CCTTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHHH
T ss_pred CCCCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHHH
Confidence 35678998765322 23333332 2333322 23134688999999999998743
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.42 E-value=2.5 Score=46.29 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=29.8
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHHHHhc-CCCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTLSVVN-GINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~svL~-G~NatIfAYGQTGSGKTyTM 119 (1104)
..|.++.+++ ++...+.+.. .+..++. +...+|+-||++|+|||+++
T Consensus 15 ~~~~p~~l~g----r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 15 PLSVFKEIPF----REDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHCSSCTT----CHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3556666665 4444544433 3334443 44558999999999999876
No 56
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.41 E-value=2.2 Score=42.08 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=17.0
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.+....++-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4444459999999999998763
No 57
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.12 E-value=1.2 Score=47.57 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=31.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc---CCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN---GINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~---G~NatIfAYGQTGSGKTyTM 119 (1104)
...|+.+.|.+..-+.+.+.+..++.. .++. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 567888888544444444444333321 1122 23567999999999999875
No 58
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.08 E-value=3.2 Score=47.91 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=50.5
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc--CC--CcceeeeccCCCCCCcccC-----------------------
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--GI--NSTFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G~--NatIfAYGQTGSGKTyTM~----------------------- 120 (1104)
.-+||.|-|-+.--+++-+.+.-|+.. .++. |. ...|+-||+.|+|||....
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcccc
Confidence 467888888776667777777776653 3333 33 3579999999999999861
Q ss_pred CChHhHHHHHHHHhhhcc
Q 001305 121 GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1104)
|-.+..++.+|.......
T Consensus 224 Gese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHA 241 (405)
T ss_dssp THHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHhC
Confidence 556778899998776554
No 59
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.00 E-value=2.5 Score=46.11 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=31.5
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhcCC---CcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI---NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~---NatIfAYGQTGSGKTyTM 119 (1104)
..+||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467888887554444444444433321 222222 346899999999999986
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=66.88 E-value=1.4 Score=47.89 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCcccC
Q 001305 82 TRQVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 82 QeeVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
++...+.+.. .+..++ .+...+++-||++|+|||+++.
T Consensus 24 r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 24 REAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 4445544422 222333 4556689999999999998764
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.28 E-value=1.1 Score=47.59 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=29.6
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHH-HHHhcCC----CcceeeeccCCCCCCcccC
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVT-LSVVNGI----NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV-~svL~G~----NatIfAYGQTGSGKTyTM~ 120 (1104)
..++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 46788988876543333322 222111 1222222 2238999999999998863
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=66.05 E-value=1.8 Score=42.46 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=15.6
Q ss_pred cceeeeccCCCCCCcccCC
Q 001305 103 STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1104)
..++-||++|+|||+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp SEEEEESSSTTTTCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4577799999999998744
No 63
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.68 E-value=0.95 Score=46.99 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.5
Q ss_pred CCcceeeeccCCCCCCcccC
Q 001305 101 INSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~ 120 (1104)
....|+-||++|+|||+.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999998763
No 64
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=65.24 E-value=1.1 Score=49.82 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=30.9
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHH----hcCCCcceeeeccCCCCCCcccC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSV----VNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~sv----L~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
...||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 45778887744333334433333322110 23456679999999999998763
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.65 E-value=2 Score=50.37 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=48.2
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc--C--CCcceeeeccCCCCCCcccC-----------------------
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN--G--INSTFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~--G--~NatIfAYGQTGSGKTyTM~----------------------- 120 (1104)
..+||-|-|-+.--+++.+.+.-|+.. ..+. | .--.|+-||+.|+|||++..
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 467888888666556666666555542 3333 3 24579999999999998761
Q ss_pred CChHhHHHHHHHHhhhcc
Q 001305 121 GITEYAIQDIYDYIDTHQ 138 (1104)
Q Consensus 121 GIi~rai~dLF~~I~~~~ 138 (1104)
|-....++.+|.......
T Consensus 285 Gesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKK 302 (467)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 555678888888765544
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=63.89 E-value=3.2 Score=47.83 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=32.4
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCC--cceeeeccCCCCCCcccC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN--STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~N--atIfAYGQTGSGKTyTM~ 120 (1104)
.|.||.|.+ |+++.+.+ ..++..+..|.. ..|+-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 567777776 55555543 345556666654 368889999999998863
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=63.46 E-value=2.4 Score=43.03 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3445677876 67889999999987
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=63.25 E-value=4 Score=44.59 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=28.6
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCC-c--ceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGIN-S--TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~N-a--tIfAYGQTGSGKTyTM 119 (1104)
.|.++.+++ ++...+.+. ..+..++.|.. . +++-||++|+|||+++
T Consensus 13 ~~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 13 SYVPKRLPH----REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCCCSCCTT----CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 455565555 444444442 23444444533 4 6899999999999876
No 69
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.24 E-value=12 Score=41.80 Aligned_cols=237 Identities=11% Similarity=0.186 Sum_probs=126.8
Q ss_pred CCCEEEEEEeCCCChhhhhcCCCcceEEe-cCceEEecCCCccCCCCCCccccCeecCCCC-ChHHHHHHHHHHHHHHHh
Q 001305 21 EERILVFVRLRPLNEKEYARNDVSDWECI-NNNSIVFKNSLLERSVYPPAYTFDRVFGCEC-PTRQVYEEAAKEVTLSVV 98 (1104)
Q Consensus 21 eerIrV~VRVRPl~~~E~~~~~~~~~~~i-~~~tIv~~~~~~e~s~~~~sF~FD~VF~~~a-sQeeVYe~vv~plV~svL 98 (1104)
.|.||+|+=+-+-.. +..+.+. .+.+|. +. .....|.|++|++... +-.+++..-+...++.++
T Consensus 58 KG~IRcFAYi~~~~~-------p~~~~idY~~~~It--~~-----~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL 123 (333)
T 4etp_B 58 KGTMRVYAYVMEQNL-------PENLLFDYENGVIT--QG-----LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMAL 123 (333)
T ss_dssp HTCCEEEEEECCSSC-------CSSCEEETTTTEEE--C-------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHH
T ss_pred cCcEEEEEEECcccC-------CccEEEecccceEe--ec-----CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHH
Confidence 357888887766211 1122222 233553 11 1246999999997765 455666666799999998
Q ss_pred -cCCCcceeeeccCCCCCCcccCCChHhHHHHHHHHhhhc---ccceEEEEeeEEEEeccc-ccccCCCCC----CC--c
Q 001305 99 -NGINSTFFAYGQTSSGKTYTMGGITEYAIQDIYDYIDTH---QEREFVLKFSAMEIYNES-VRDLLSTDS----TP--L 167 (1104)
Q Consensus 99 -~G~NatIfAYGQTGSGKTyTM~GIi~rai~dLF~~I~~~---~~~~f~V~vS~lEIYNE~-V~DLLs~~s----~~--L 167 (1104)
.+.|+.||..|+.- -+.....++..+..+ -...|.+.+-|+.+-++. ..|||.+.+ .. +
T Consensus 124 ~~~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~l 193 (333)
T 4etp_B 124 NQKKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 193 (333)
T ss_dssp HTTCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------C
T ss_pred ccCCCeeEEEecCCC----------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceE
Confidence 99999999998762 123444555555544 235788999998888776 799998753 22 2
Q ss_pred eeeeCCCCCeEecCceEEEeCCHHHHHHHHHHHHhhccccccccCCC---CCCceEEEEEEEEeecccccCCCCceeEEE
Q 001305 168 RLLDDPEKGTVVERLTEETLTDMSHLMELLAVCEAQRQIGETALNET---SSRSHQILRLTIESSAREYLGAGNSSILSA 244 (1104)
Q Consensus 168 ~i~ed~~~gv~V~gLtev~V~S~eE~l~LL~~g~~~R~~asT~~N~~---SSRSHaIftI~Ie~~~~e~~~~~~~~~~~S 244 (1104)
++.+ ...--+-+.+.+.+..+.+.++. ++... -...-.|+.+.+...... ..++.....-
T Consensus 194 kiee----~sI~ldS~~i~i~~~~~~l~~~~-----------kl~~~~~~~~~GI~IlKfqf~~~~~~--~~~n~~~~~~ 256 (333)
T 4etp_B 194 KFEK----HSISLDSKLVIIENGLEDLPLNF-----------SADEHPNLPHSGMGIIKVQFFPRDSK--SDGNNDPVPV 256 (333)
T ss_dssp EEET----TEEECCSCCEEESSGGGGSCTTS-----------SCCC--------CEEEEEEEEECC----------CCCE
T ss_pred Eeec----ceEeecceEEEeccccccchhhh-----------ccccCCCCCCCCceEEEEEEEecCcc--cccccCCcce
Confidence 2222 11222334455554433222111 01111 112344666666554322 1122122334
Q ss_pred eEEEEecCCCccccccccccccccccccchhhHHHHHHHHHHhcCCCCcccCCCCchhhHHhhhccCCCceeeEEEecCC
Q 001305 245 SVNFVDLAGSERASQTLNAGARLKEGSHINRSLLTLGTVIRKLSKGRNAHIPYRDSKLTRILQNSLGGNARTAIICTMSP 324 (1104)
Q Consensus 245 kL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdsLGGNSkT~mI~tISP 324 (1104)
..+||.+-+.. .+..|.++|.. ++ .-.|+++-+|+.-| -..+.++|+++.-
T Consensus 257 ~fYFiEi~~~~--------------------ti~~l~~~i~~---~~-----~~~spi~~ilkkLl-~~TKS~flfnl~~ 307 (333)
T 4etp_B 257 DFYFIELNNLK--------------------SIEQFDKSIFK---KE-----SAETPIALVLKKLI-SDTKSFFLLNLND 307 (333)
T ss_dssp EEEEEEECSHH--------------------HHHHHHSCC------------CCCCHHHHHHHHHH-HHSBCEEEEEECC
T ss_pred eEEEEEecChh--------------------HHHHHHhhcCc---cc-----ccCCCHHHHHHHHH-hhCcceEEEEcCC
Confidence 67888875442 12333333322 11 23467777777655 3468899999976
Q ss_pred CCC
Q 001305 325 ARS 327 (1104)
Q Consensus 325 s~~ 327 (1104)
...
T Consensus 308 ~~~ 310 (333)
T 4etp_B 308 SKN 310 (333)
T ss_dssp STT
T ss_pred cch
Confidence 554
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=62.79 E-value=3.2 Score=41.45 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=17.7
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 445567766 577889999999653
No 71
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=62.58 E-value=3.6 Score=46.14 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=30.4
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HH---hcCCCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SV---VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-sv---L~G~NatIfAYGQTGSGKTyTM 119 (1104)
..+.||.+.|.+.--+.+.+.+..++.. .+ +......|+-||++|+|||+.+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567888888443333333333332221 11 1122457999999999999876
No 72
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.45 E-value=4 Score=45.50 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=31.8
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhcCC---CcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI---NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~---NatIfAYGQTGSGKTyTM 119 (1104)
..+|+.|.+.+..-+.+.+.+..|+.. .++.+. ...|+-||++|+|||+.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 467888888555444455444444321 222222 245889999999999886
No 73
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.23 E-value=1.4 Score=46.17 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=30.1
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhc----CCCcceeeeccCCCCCCcccC
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVN----GINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~----G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.+.|+.+.+.+..-+.+.+.+ ..+.. ..+. .....|+-||++|+|||+.+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHH
Confidence 568888888654444443322 22111 1111 234468999999999998763
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=62.01 E-value=2.7 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=17.6
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+..++.|.+ ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 345567766 66778999999986
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.42 E-value=3.4 Score=45.23 Aligned_cols=42 Identities=33% Similarity=0.481 Sum_probs=26.5
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.|+.+++ |..+.+. +...+-.|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566665 4444443 3333345543337889999999999874
No 76
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=60.41 E-value=39 Score=31.27 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
++.|..+++.|+.++..+... ....+-...+..|..+..+|..+..++..+..++++|...+.+
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~---~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQ---GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888887766532 1112333467889999999999999999999999987655443
No 77
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.07 E-value=48 Score=32.17 Aligned_cols=64 Identities=16% Similarity=0.331 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
..+|.+|+.|+.+|+.++..+... .......+..++..|+.++.+-+.+++.+....+.|...+
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E----~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~ 77 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTE----SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL 77 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999886421 0112233334444444444444444444444455555433
No 78
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.39 E-value=3.4 Score=42.71 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.8
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455678877 67888999999986
No 79
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=58.00 E-value=3.2 Score=44.29 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.4
Q ss_pred CCCcceeeeccCCCCCCccc
Q 001305 100 GINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM 119 (1104)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446899999999999876
No 80
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=56.87 E-value=1.2 Score=47.95 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=27.9
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhcCCC----cceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGIN----STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~N----atIfAYGQTGSGKTyTM 119 (1104)
..+||.|-+.+.-.+.+.+.+..|+-. .++.+++ ..++-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 456777766555455555555444432 3344332 23899999999999875
No 81
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.71 E-value=40 Score=30.75 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
|.-||.|+..|+.+...+.. -..+.......+..++..|+.++...+++++.|+-.+
T Consensus 22 I~lLqmEieELKekN~~L~~--------e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQ--------EVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555554433321 1122223344588888889999999999998887654
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=56.66 E-value=2.3 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.6
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|.| ++..++||||||.+
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445678876 67789999999976
No 83
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=55.58 E-value=3.6 Score=47.48 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.++..++..-...|...|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34455555556678899999999999973
No 84
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=55.37 E-value=4 Score=41.84 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=18.1
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|.+ ++..++||||||.+
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 3445677876 56778999999986
No 85
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=54.01 E-value=5.2 Score=42.57 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=26.4
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.|+.+.+ ++.+.+.+ ...+-.|....++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRL----KHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp STTTCCS----CHHHHHHH----HHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHhhC----CHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 4566655 45554443 222234544458999999999998764
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=53.79 E-value=3.7 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=18.4
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|.| +++.++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 3445567866 67889999999976
No 87
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=53.62 E-value=5.9 Score=42.95 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHh--cCCCcceeeeccCCCCCCccc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVV--NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL--~G~NatIfAYGQTGSGKTyTM 119 (1104)
+|+.+.+ +..+...+ ...+..+. .+....|+-||++|+|||+.+
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5676666 44455443 23333333 344567999999999999875
No 88
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.57 E-value=4.5 Score=43.72 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=27.1
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..|+.+.+.+. +. ..+...+..|....++-||++|+|||+++.
T Consensus 34 ~~~~~i~g~~~----~~----~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 34 KNLDEVTAQDH----AV----TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp SSTTTCCSCCT----TH----HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhhCCHH----HH----HHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 35677776443 22 223334445543448899999999999864
No 89
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=53.33 E-value=4.6 Score=40.87 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=18.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3445567876 566789999999764
No 90
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.00 E-value=27 Score=31.24 Aligned_cols=27 Identities=11% Similarity=0.375 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 394 EQVIEEMDRQIRELTKERDLAKSRVDN 420 (1104)
Q Consensus 394 e~~i~ele~qi~EL~~erd~~q~~i~~ 420 (1104)
+..|+++++++.+...++..++++++.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 91
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.09 E-value=4.1 Score=44.18 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=27.1
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHh-cCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVV-NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1104)
.|.++.+++ .+...+.+.. .+..++ .+....++-||++|+|||+.+
T Consensus 16 ~~~p~~~~g----r~~e~~~l~~-~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 16 DYIPDELPH----REDQIRKIAS-ILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp SCCCSCCTT----CHHHHHHHHH-SSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 455555555 3333433322 222222 344568999999999999876
No 92
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=52.02 E-value=2.4 Score=42.27 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=16.9
Q ss_pred HHhcCCCcceeeeccCCCCCCccc
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.++.|.+ ++..|+||+|||.+.
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHH
Confidence 4456755 567899999999876
No 93
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=51.92 E-value=4 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.334 Sum_probs=18.8
Q ss_pred HHhcCCCcceeeeccCCCCCCcccC
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
+++.--.+.|.-.|+||||||++|.
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHH
Confidence 3344444578888999999999973
No 94
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=51.73 E-value=4.9 Score=43.63 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
.+..++.|....+++.++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 45566787445578899999999976
No 95
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=51.40 E-value=4.8 Score=41.02 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=17.7
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+..++.|.|. +..++||||||.+
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 4456688764 6778999999976
No 96
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=51.32 E-value=5 Score=41.66 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567876 566789999999763
No 97
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=51.24 E-value=5.8 Score=43.59 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.++..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34556678887 677899999999873
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=50.93 E-value=5.9 Score=38.03 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.1
Q ss_pred CCcceeeeccCCCCCCcccCCC
Q 001305 101 INSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.+..|+-||.+|+|||+....+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 4456888999999999876543
No 99
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=50.75 E-value=6.7 Score=43.10 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.4
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34777999999999886
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=49.97 E-value=5.6 Score=38.19 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.0
Q ss_pred cCCCcceeeeccCCCCCCccc
Q 001305 99 NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1104)
...+..|+-||.+|+|||+..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345567899999999999765
No 101
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=49.66 E-value=3.4 Score=47.54 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=29.5
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhcC---CCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNG---INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G---~NatIfAYGQTGSGKTyTM 119 (1104)
...||.|.|.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+.+
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 567888877443333333333222221 22222 2356889999999999875
No 102
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.27 E-value=6.1 Score=41.73 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCCCcccC
Q 001305 102 NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1104)
...|+-||++|+|||+++.
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578899999999998763
No 103
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=49.04 E-value=5.1 Score=47.27 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
..++..+..|.+.+|++ ++||||||.++.
T Consensus 188 ~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 188 NRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 33444445576655544 899999999964
No 104
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=48.90 E-value=5.3 Score=41.34 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=17.2
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+..++.|.| ++..++||||||.+
T Consensus 60 i~~~~~g~~--~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 60 WPVALSGLD--MVGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHHTCC--EEEEECTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCcCHHHHH
Confidence 344567876 45667999999987
No 105
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=48.68 E-value=4.8 Score=41.71 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..+..|. .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 444555665 4677899999999754
No 106
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=48.42 E-value=6 Score=40.63 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+..++.|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 344567876 56678999999976
No 107
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.41 E-value=7.6 Score=45.01 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=28.4
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
.||.|.|. ..... .++..+..+....++-||++|+|||+.+.++
T Consensus 178 ~ld~iiGr----~~~i~----~l~~~l~r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCccCc----HHHHH----HHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 56777663 33333 3333334455567789999999999987554
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=48.28 E-value=6.7 Score=38.83 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998753
No 109
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=48.27 E-value=5 Score=47.14 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=31.7
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHh----cCCCcceeeeccCCCCCCccc
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVV----NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL----~G~NatIfAYGQTGSGKTyTM 119 (1104)
...|+.+.|.+..-+.+.+.+..++.. .++ ......|+-||++|+|||+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 356777777555555555555443221 111 244567999999999999865
No 110
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=47.74 E-value=35 Score=39.13 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 363 QLQKELARLENEMKNLQSTPKKCDFT---LLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 363 ~LqkEi~rLe~eL~~l~~~~~~~~~~---ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
.||++|.++++.+..++.....|..+ +..-++.+..+-+++|+||..+...+..+++++..++.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777666665444445443 333333333334455556555555555555555544443
No 111
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=47.50 E-value=6.4 Score=41.31 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=18.1
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3445567866 566779999999763
No 112
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=47.29 E-value=6.8 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.8
Q ss_pred HHhcCCCcceeeeccCCCCCCcccC
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.+-.|.+ |.-.|+||||||+||.
T Consensus 256 ~v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 256 AIEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHHTTCC--EEEEESTTSSHHHHHH
T ss_pred HHhCCCE--EEEECCCCCCHHHHHH
Confidence 3446766 6778999999999973
No 113
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.75 E-value=4.1 Score=47.24 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=28.0
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+||.|++ |+.+... ...+...+-.|.-..++-||++|+|||+.+
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4566665 5555421 133333444555568999999999999875
No 114
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=45.83 E-value=7 Score=42.81 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.6
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 445667775566788899999999873
No 115
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=45.50 E-value=87 Score=29.23 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLL 422 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~ 422 (1104)
..-.++|++|+..|+.|+...-.. .+++--...+.++.++.++++.+.++....+..++-.+
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQ---DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQ---DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999988766443 45555556666777777777777777777777766544
No 116
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.42 E-value=17 Score=45.47 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=49.2
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHH-HHhcCCC----cceeeeccCCCCCCcccC-----------------------
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGIN----STFFAYGQTSSGKTYTMG----------------------- 120 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~N----atIfAYGQTGSGKTyTM~----------------------- 120 (1104)
..+||.|-|-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888888877777787777666653 4555544 469999999999998762
Q ss_pred CChHhHHHHHHHHhhhc
Q 001305 121 GITEYAIQDIYDYIDTH 137 (1104)
Q Consensus 121 GIi~rai~dLF~~I~~~ 137 (1104)
|-....++.+|.....+
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 34456678888766544
No 117
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=44.89 E-value=6.7 Score=44.74 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
.++..++.|.+..++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345566777667789999999999976
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.85 E-value=76 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 393 KEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 393 ~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
...+++++.+++.+|+++.+.++.++..|...+
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666654433
No 119
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=44.66 E-value=8.8 Score=41.90 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=23.3
Q ss_pred HHHHHHHhcCC---CcceeeeccCCCCCCcccC
Q 001305 91 KEVTLSVVNGI---NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 91 ~plV~svL~G~---NatIfAYGQTGSGKTyTM~ 120 (1104)
...+...+.|. --||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44466778887 3379999999999998753
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=44.20 E-value=5.1 Score=43.26 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=25.1
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCC-CcceeeeccCCCCCCcccC
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGI-NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1104)
+||.+.+ ++.+...+ ...+-.|. ...++-||++|+|||+++.
T Consensus 24 ~~~~ivg----~~~~~~~l----~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 24 TIDECIL----PAFDKETF----KSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp STTTSCC----CHHHHHHH----HHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred CHHHHhC----cHHHHHHH----HHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 4666665 34443322 22222343 3567888899999999863
No 121
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=44.13 E-value=4.7 Score=40.96 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.1
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
+..+++|.| ++..++||||||.+
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 344567766 46778999999986
No 122
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=44.12 E-value=7.8 Score=42.00 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|....++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 344557774456788899999999764
No 123
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=44.01 E-value=15 Score=39.33 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=27.2
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHh--cCCCcceeeeccCCCCCCccc
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVV--NGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL--~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+|+.+.+. ..+...+ ..++..+. .+....|+-||++|+|||+.+
T Consensus 9 ~~~~~~ig~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 367777664 3333332 22233322 234567889999999999875
No 124
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=43.01 E-value=6.3 Score=42.29 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.0
Q ss_pred CCcceeeeccCCCCCCcccC
Q 001305 101 INSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~ 120 (1104)
-...+.-.|+||||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567788999999999873
No 125
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=42.24 E-value=7.6 Score=42.34 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.9
Q ss_pred CCCcceeeeccCCCCCCccc
Q 001305 100 GINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM 119 (1104)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 126
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=42.21 E-value=8.3 Score=42.55 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+..++.|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3455678877 677789999999764
No 127
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.79 E-value=6.1 Score=47.60 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=18.6
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccCC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1104)
.|..++.... ..+-.|+.|||||+|+..
T Consensus 197 AV~~al~~~~-~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKE-LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSS-EEEEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCC-ceEEECCCCCCHHHHHHH
Confidence 3445554333 345679999999999643
No 128
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.52 E-value=7.5 Score=48.43 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVD 419 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~ 419 (1104)
...+..+.+++..|+.++..+...........+.....++.+++++++.+......-...++
T Consensus 400 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 461 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888877777665432222223445555566666666666554443333333
No 129
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=41.39 E-value=11 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHhcC---CCcceee--eccCCCCCCcccC
Q 001305 95 LSVVNG---INSTFFA--YGQTSSGKTYTMG 120 (1104)
Q Consensus 95 ~svL~G---~NatIfA--YGQTGSGKTyTM~ 120 (1104)
..+..| ....++. ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 445555 4567888 9999999998763
No 130
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.14 E-value=6.4 Score=41.84 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.1
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..++-+|++|+|||+++
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999875
No 131
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=41.00 E-value=7.2 Score=41.26 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=17.3
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 4554458999999999998763
No 132
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=40.80 E-value=17 Score=39.33 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCC-----CcceeeeccCCCCCCccc
Q 001305 88 EAAKEVTLSVVNGI-----NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 88 ~vv~plV~svL~G~-----NatIfAYGQTGSGKTyTM 119 (1104)
.+...++..++.|+ ...|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34455566666553 246888999999999764
No 133
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=40.26 E-value=8.7 Score=42.14 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=17.8
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 345567766 677889999999753
No 134
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.80 E-value=1.3e+02 Score=30.44 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 358 KALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQ 423 (1104)
Q Consensus 358 ~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q 423 (1104)
...+..|+.++..|+.+++.+.. .++++...++.+..++..|+-+...++.++..|.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLee--------el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKE--------VIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888887776642 34555566666666666666666666555555543
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.70 E-value=6.9 Score=45.91 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=28.9
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhcC----CCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNG----INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G----~NatIfAYGQTGSGKTyTM 119 (1104)
..++|+.|.+.+..-+++.+.+ ..+-. ..+.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3568888887544333333221 11110 11222 2345899999999999876
No 136
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=39.40 E-value=8.9 Score=40.14 Aligned_cols=23 Identities=22% Similarity=-0.090 Sum_probs=17.4
Q ss_pred HHhcCCCcceeeeccCCCCCCcccC
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.++.+.+ ++.+|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 4566655 6677899999999853
No 137
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=38.94 E-value=10 Score=40.19 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.6
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..+++|.+ ++..++||+|||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344567766 566789999999765
No 138
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=38.94 E-value=7 Score=42.34 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.1
Q ss_pred cceeeeccCCCCCCcccC
Q 001305 103 STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1104)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 357889999999998763
No 139
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=38.26 E-value=7.8 Score=41.06 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=19.9
Q ss_pred HHHhcCCC--cceeeeccCCCCCCcccCC
Q 001305 95 LSVVNGIN--STFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 95 ~svL~G~N--atIfAYGQTGSGKTyTM~G 121 (1104)
..++.|.- -+|+-||+.|+|||++...
T Consensus 49 ~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 49 KSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 34455532 4699999999999998644
No 140
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.23 E-value=80 Score=31.21 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 394 EQVIEEMDRQIRELTKERDLAKSRV 418 (1104)
Q Consensus 394 e~~i~ele~qi~EL~~erd~~q~~i 418 (1104)
.+.++++.+++.+|+++...++..+
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 141
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.07 E-value=6.8 Score=46.22 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=28.6
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhcCC----CcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNGI----NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G~----NatIfAYGQTGSGKTyTM 119 (1104)
..++||.|.+.+..-.++-+- +..+-. .++..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 357888888754333333221 111110 122222 234899999999999876
No 142
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=37.59 E-value=13 Score=45.09 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=47.0
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChH-------------hHHHHHHHHhhh
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE-------------YAIQDIYDYIDT 136 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~-------------rai~dLF~~I~~ 136 (1104)
|.+.. |.|...|..-+... +..+-.|... ....|.||||||+||..++. ..+..|++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 34443 37788887776654 4444556432 45679999999999964432 234556655544
Q ss_pred c-ccceEEEEeeEEEEecccccccCCC
Q 001305 137 H-QEREFVLKFSAMEIYNESVRDLLST 162 (1104)
Q Consensus 137 ~-~~~~f~V~vS~lEIYNE~V~DLLs~ 162 (1104)
. ++..+....|| ||...|
T Consensus 76 ~~~~~~V~~fps~--------yd~~~p 94 (664)
T 1c4o_A 76 LFPENAVEYFISY--------YDYYQP 94 (664)
T ss_dssp HCTTSEEEECCCG--------GGTSCC
T ss_pred HCCCCeEEEcCch--------hhccCc
Confidence 3 23344455554 666654
No 143
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.92 E-value=1.1e+02 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 386 DFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 386 ~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
...+|...-.-|..|+.+..++..+.+.++.+.+.|.+.+
T Consensus 38 k~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888888888888888777654
No 144
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=36.75 E-value=5.6 Score=45.11 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=18.8
Q ss_pred CcceeeeccCCCCCCcccCCChHhH
Q 001305 102 NSTFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
+.-++.+|.||||||.++..+++.+
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH
Confidence 5567899999999999865444433
No 145
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=36.36 E-value=12 Score=41.25 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=17.8
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.| ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 345567877 467789999999753
No 146
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=36.30 E-value=17 Score=33.27 Aligned_cols=45 Identities=31% Similarity=0.351 Sum_probs=37.1
Q ss_pred HhhcCHHHHHHHHHHhccCCCCcchhhhhhhhhcCCCCcchhhHHHHHHHHHHhhhcCCCCccc
Q 001305 1009 HQKFSRKEREELYKKWGIALNTKQRSLQLARRIWSSTKDMNHIKESASLVAKLIDFVQPGQAPK 1072 (1104)
Q Consensus 1009 ~~kl~~~ere~ly~kwgi~l~~k~r~lql~~~lwt~~~d~~hv~esa~~vaklv~~~e~~~~~k 1072 (1104)
+..|+.||.+.|..||+|.. -||=.-+++|| ||+.+|+ .+|+..|
T Consensus 20 H~vLs~eE~~~ll~~y~i~~------~qLP~I~~~DP------------va~~~g~-k~GdVvk 64 (84)
T 4ayb_H 20 HEVLSIDEAYKILKELGIRP------EQLPWIRASDP------------VARSINA-KPGDIIR 64 (84)
T ss_dssp EEECCHHHHHHHHHHHTCCG------GGSCCEESSSH------------HHHHHTC-CTTCEEE
T ss_pred eEECCHHHHHHHHHHhcCCH------hHCCeecccCH------------hHHhhCC-CCCCEEE
Confidence 35799999999999999952 38888899998 9999996 5577654
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.64 E-value=12 Score=39.49 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.8
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.|.-..++-||+.|+|||+++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4543348999999999998764
No 148
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.62 E-value=2e+02 Score=27.66 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 362 KQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 362 k~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
+.|+..+.+|+.++...+... .....+....+..|++++..|+..++.++..+.+|.|.-.+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~----~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKL----EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 445555555555555443210 01223444567777888888888888877777777765443
No 149
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.48 E-value=33 Score=41.59 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=50.3
Q ss_pred ccccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChH-------------hHHHHHHHHhh
Q 001305 69 AYTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE-------------YAIQDIYDYID 135 (1104)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~-------------rai~dLF~~I~ 135 (1104)
.|..-.=|.|...|..-+... +..+-.|... ....|.|||||||||..++. ..+..++..+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 466666788999998877654 4444556432 45679999999999964432 23555665554
Q ss_pred hc-ccceEEEEeeEEEEe
Q 001305 136 TH-QEREFVLKFSAMEIY 152 (1104)
Q Consensus 136 ~~-~~~~f~V~vS~lEIY 152 (1104)
.. ++..+....||+.-|
T Consensus 79 ~~~~~~~v~~fps~yd~~ 96 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYY 96 (661)
T ss_dssp HHCTTSEEEEECCCEEEE
T ss_pred HHcCCCcEEEcccccccc
Confidence 43 233556667765544
No 150
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.46 E-value=1e+02 Score=29.84 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 396 VIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 396 ~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
++++++.+|+.|..++..+..+++.|......
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 36666666777666666666666666554443
No 151
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=35.32 E-value=8.7 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.2
Q ss_pred CcceeeeccCCCCCCcccCCChH
Q 001305 102 NSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
+..++..|++|||||+|+..+++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 35678899999999999865443
No 152
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=35.08 E-value=13 Score=43.10 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHhcCCCcceeeeccCCCCCCccc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..++.|.+..++..++||||||.+.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4556774456788899999999873
No 153
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=34.89 E-value=13 Score=41.41 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445578875 57888999999983
No 154
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.70 E-value=2.3e+02 Score=26.14 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001305 361 VKQLQKELARLENEMKNLQSTPKKCDF-----------TLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 361 ik~LqkEi~rLe~eL~~l~~~~~~~~~-----------~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~ 426 (1104)
...+..++..++..+..+......|.. ......+.++..+..++.+|..+...++.++..|...+.
T Consensus 26 ~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 26 IGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666543333322 133444455556666666666666665555555554443
No 155
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=34.60 E-value=7.6 Score=43.80 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.3
Q ss_pred CCcceeeeccCCCCCCcccC
Q 001305 101 INSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~ 120 (1104)
-...|.-.|+||||||+++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34567889999999999873
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=34.07 E-value=12 Score=37.96 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHhcC-C--CcceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVNG-I--NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~G-~--NatIfAYGQTGSGKTyTM~ 120 (1104)
+-++.++.| + ...+.-+|++|+|||+.+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 345677743 3 3467789999999998763
No 157
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=33.72 E-value=22 Score=37.35 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCC-----cceeeeccCCCCCCccc
Q 001305 86 YEEAAKEVTLSVVNGIN-----STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 86 Ye~vv~plV~svL~G~N-----atIfAYGQTGSGKTyTM 119 (1104)
|+.+...++..++.|+. ..|+..|+.|||||+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 33333444445554433 35788999999999753
No 158
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.27 E-value=97 Score=27.69 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 390 LKEKEQVIEEMDRQIRELTKERDLA 414 (1104)
Q Consensus 390 l~e~e~~i~ele~qi~EL~~erd~~ 414 (1104)
+++++.++.+.+.+|++|+.+.|..
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444443
No 159
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=33.19 E-value=14 Score=40.13 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=18.5
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4456677866 566789999999764
No 160
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=32.57 E-value=14 Score=42.83 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 92 EVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
.++..++.|.+..+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 344556666556678899999999976
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.53 E-value=19 Score=36.48 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=19.1
Q ss_pred HHHHHHHHhc--CCCcceeeeccCCCCCCccc
Q 001305 90 AKEVTLSVVN--GINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 90 v~plV~svL~--G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++..+.. +-.-.|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444442 33345666799999999876
No 162
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=32.52 E-value=13 Score=41.12 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999865
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=32.45 E-value=22 Score=38.58 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999886
No 164
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=31.57 E-value=8.6 Score=40.81 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=15.4
Q ss_pred HhcCCCcceeeeccCCCCCCcccC
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
++.|.++ +..++||+|||.+..
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445444 338999999998863
No 165
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=31.55 E-value=16 Score=41.91 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=18.4
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445567877 566789999999764
No 166
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.50 E-value=1.3e+02 Score=38.89 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.1
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
-.+.|-||+.-|.+|||||.+.
T Consensus 152 ~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 152 RDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEEcCCCCCCccchH
Confidence 3799999999999999999886
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.39 E-value=12 Score=40.54 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=14.4
Q ss_pred eeeeccCCCCCCcccC
Q 001305 105 FFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM~ 120 (1104)
++-||+.|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999874
No 168
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.28 E-value=1.6e+02 Score=30.63 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 357 DKALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDN 420 (1104)
Q Consensus 357 d~aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~ 420 (1104)
+..+|..|+.|+..|..+|.. ++..|+.|++++..++.+....+.++.+
T Consensus 18 ad~LV~~L~~En~~L~~ql~~---------------k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDT---------------KATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 345788888888888887753 4455666666666666666555544443
No 169
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=30.76 E-value=12 Score=45.04 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.1
Q ss_pred cceeeeccCCCCCCcccCCC
Q 001305 103 STFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1104)
..++..|+.|||||+|+..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~ 215 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATI 215 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 35678899999999997544
No 170
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.60 E-value=63 Score=37.94 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=7.5
Q ss_pred EEecCCCCCChHHHHH
Q 001305 319 ICTMSPARSHVEQSRN 334 (1104)
Q Consensus 319 I~tISPs~~~~eETLs 334 (1104)
+||-.+........+.
T Consensus 391 ~cc~~~~~~~~~~~~~ 406 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQ 406 (597)
T ss_dssp EEEECCSSHHHHHHHH
T ss_pred ccccCCCccchhHHHH
Confidence 4555555444443333
No 171
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=30.22 E-value=15 Score=39.41 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344456632 3567799999999874
No 172
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=29.75 E-value=26 Score=41.90 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=18.9
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3445677887 677889999999753
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.69 E-value=16 Score=36.48 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHHhc-CCC--cceeeeccCCCCCCcccC
Q 001305 92 EVTLSVVN-GIN--STFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 92 plV~svL~-G~N--atIfAYGQTGSGKTyTM~ 120 (1104)
+-++.++. |+. ..+.-+|.+|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 34667775 554 467889999999998764
No 174
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=29.68 E-value=19 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=18.2
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
.+..++.|.+ +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 3445578876 57778999999975
No 175
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=29.64 E-value=10 Score=41.13 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.2
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3445567866 566789999999763
No 176
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=29.60 E-value=18 Score=41.29 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=17.6
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 345567876 466789999999763
No 177
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.34 E-value=2e+02 Score=26.14 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=29.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001305 385 CDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 385 ~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~ 426 (1104)
....+|...-.-|..|+.+...+..+.+.++.+.+.|.+.+.
T Consensus 42 sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777888887777777777777777766666554
No 178
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=29.14 E-value=20 Score=41.08 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 79 ECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 79 ~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
+..|.+++..+.. .+..| ...++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 4467766665433 22333 3478899999999998763
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=29.11 E-value=15 Score=36.77 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=19.4
Q ss_pred HHHHHhc-CC--CcceeeeccCCCCCCcccC
Q 001305 93 VTLSVVN-GI--NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL~-G~--NatIfAYGQTGSGKTyTM~ 120 (1104)
.++.++. |+ ...+.-+|++|+|||+.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 3455664 44 2356678999999998864
No 180
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=29.05 E-value=16 Score=40.52 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=15.6
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 181
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=28.82 E-value=22 Score=35.89 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=14.6
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
...|...|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999875
No 182
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=27.62 E-value=20 Score=37.10 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=17.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+++.+-.|-- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4444545544 445799999999887
No 183
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=27.26 E-value=2.3e+02 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 001305 359 ALVKQLQKELARLENEMKNLQS 380 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~ 380 (1104)
.-.++|++|+..|+.|+.....
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSa 27 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISA 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhccch
Confidence 3457789999999998876644
No 184
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.25 E-value=22 Score=43.56 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=28.7
Q ss_pred cccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 70 YTFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 70 F~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
-.||.|.+. +.... .++..+..+....++-||++|+|||....++
T Consensus 177 ~~ld~iiG~----~~~i~----~l~~~l~~~~~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 177 DSLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp SCSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCCccCc----hHHHH----HHHHHHhCCCCCCeEEECCCCCCHHHHHHHH
Confidence 356666663 33333 3333444556666899999999999876543
No 185
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.06 E-value=18 Score=44.15 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=29.4
Q ss_pred ccCeecCCCCChHHHHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcccCCChH
Q 001305 71 TFDRVFGCECPTRQVYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 71 ~FD~VF~~~asQeeVYe~vv~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1104)
.||.|.+ ++.... .++..+.......++-||++|+|||+.+.++..
T Consensus 184 ~~d~~iG----r~~~i~----~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 184 GIDPLIG----REKELE----RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CSCCCCS----CHHHHH----HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCccC----CHHHHH----HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 4666665 333333 344444455556688899999999998765443
No 186
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=26.83 E-value=19 Score=40.86 Aligned_cols=23 Identities=22% Similarity=-0.080 Sum_probs=17.2
Q ss_pred HHHhcCCCcceeeeccCCCCCCccc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
..++.|.+ ++..|+||+|||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34556654 667789999999985
No 187
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=26.77 E-value=20 Score=42.85 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=18.7
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCccc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++..++.|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445567876 567789999999875
No 188
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=26.71 E-value=19 Score=39.64 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=18.3
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.+..++.| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34566777 45567899999998763
No 189
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=26.70 E-value=20 Score=40.19 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=16.0
Q ss_pred HHhcCCCcceeeeccCCCCCCccc
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+-.|.+ +.-.|+||||||+++
T Consensus 171 ~i~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCC--EEEEESSSSCHHHHH
T ss_pred HHhcCCE--EEEECCCCCCHHHHH
Confidence 4446665 444599999999987
No 190
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=26.68 E-value=12 Score=36.83 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred ceeeeccCCCCCCcccC
Q 001305 104 TFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1104)
.+.-.|++|||||+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999999873
No 191
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.59 E-value=53 Score=38.96 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001305 391 KEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGEE 428 (1104)
Q Consensus 391 ~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~~ 428 (1104)
.+++.+|+-|+++|.....++..+|+.|++++..|...
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677666666667777777777766666543
No 192
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=26.30 E-value=28 Score=38.14 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.9
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.+.-.|++|||||+|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667899999999987
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=25.96 E-value=20 Score=36.01 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHHhc-CCC--cceeeeccCCCCCCccc
Q 001305 92 EVTLSVVN-GIN--STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 92 plV~svL~-G~N--atIfAYGQTGSGKTyTM 119 (1104)
+-++.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34566663 443 35777899999999876
No 194
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=25.84 E-value=22 Score=41.90 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcccC
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
++..+..|. .|+-||++|+|||+.+.
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 334445554 57889999999998764
No 195
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=25.83 E-value=22 Score=41.79 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 93 VTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
++..++.|-+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 44455655455678889999999976
No 196
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=25.77 E-value=15 Score=34.77 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.2
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999854
No 197
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=25.59 E-value=14 Score=41.30 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.5
Q ss_pred CcceeeeccCCCCCCcccCC
Q 001305 102 NSTFFAYGQTSSGKTYTMGG 121 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1104)
|.-++..|+||||||+++.-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHH
Confidence 44467789999999998743
No 198
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.43 E-value=11 Score=39.71 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=18.3
Q ss_pred CcceeeeccCCCCCCcccCCChHh
Q 001305 102 NSTFFAYGQTSSGKTYTMGGITEY 125 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~r 125 (1104)
...++-||..|+|||..+.++..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH
Confidence 346788899999999988665443
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.23 E-value=25 Score=43.73 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=37.2
Q ss_pred CccccCeecCCCCChHHHHHHHHHHHHH-HHhcC----CCcceeeeccCCCCCCccc
Q 001305 68 PAYTFDRVFGCECPTRQVYEEAAKEVTL-SVVNG----INSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~vv~plV~-svL~G----~NatIfAYGQTGSGKTyTM 119 (1104)
..+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4588999999887777777777665543 22222 2346899999999999865
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.09 E-value=11 Score=38.07 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.7
Q ss_pred ceeeeccCCCCCCcccCCChH
Q 001305 104 TFFAYGQTSSGKTYTMGGITE 124 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ 124 (1104)
.++-||+.|+|||+.+.+++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999998765443
No 201
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.97 E-value=3.2e+02 Score=26.29 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSI 425 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~ 425 (1104)
.-.+.|+.+...|+.+|..+..... .+........++-..++.+|..+....++.+..|.+.+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~----~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQ----ELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777766543210 11122233344455556666666655555555555544
No 202
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=24.67 E-value=19 Score=42.60 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.9
Q ss_pred cCCCcceeeeccCCCCCCcccC
Q 001305 99 NGINSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1104)
.-.++.++..|..|||||+|+.
T Consensus 19 ~~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 19 AAPRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp TCCSSCEEEEECTTSCHHHHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHH
Confidence 3446678899999999999974
No 203
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.59 E-value=28 Score=40.71 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CcceeeeccCCCCCCccc
Q 001305 102 NSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1104)
...++-||++|+|||+++
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999886
No 204
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=24.53 E-value=20 Score=36.37 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHhc-CC--CcceeeeccCCCCCCcccC
Q 001305 94 TLSVVN-GI--NSTFFAYGQTSSGKTYTMG 120 (1104)
Q Consensus 94 V~svL~-G~--NatIfAYGQTGSGKTyTM~ 120 (1104)
++.++. |+ ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 345553 33 3467789999999998753
No 205
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.32 E-value=18 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.5
Q ss_pred cceeeeccCCCCCCcccCCCh
Q 001305 103 STFFAYGQTSSGKTYTMGGIT 123 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi 123 (1104)
..++..|+.|||||+|+..++
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 346789999999999986543
No 206
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=24.16 E-value=18 Score=45.02 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.1
Q ss_pred cceeeeccCCCCCCcccCCC
Q 001305 103 STFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1104)
..++..|+.|||||+|+..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~ 391 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATI 391 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 35678999999999997554
No 207
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=24.15 E-value=15 Score=36.49 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.9
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999875
No 208
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=23.72 E-value=33 Score=38.09 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.3
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..|.-.|++|+|||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667899999999987
No 209
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=23.60 E-value=29 Score=41.44 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.7
Q ss_pred HHHHhcCCCcceeeeccCCCCCCccc
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
+..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 344567877 567789999999853
No 210
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=23.43 E-value=69 Score=29.96 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001305 359 ALVKQLQKELARLENEMKNLQSTPKKCDFTLLKEKEQVIEEMDRQIRELTKERDLAKSRV 418 (1104)
Q Consensus 359 aLik~LqkEi~rLe~eL~~l~~~~~~~~~~ll~e~e~~i~ele~qi~EL~~erd~~q~~i 418 (1104)
.-.++|+.|+..|+.|+...-.. .+++--..++.++.+|.++++.+.+++...+..+
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQ---DEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~f 86 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQ---DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAF 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTT---TCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999998776443 4454444445555555555555555554444443
No 211
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=23.43 E-value=29 Score=38.46 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=16.4
Q ss_pred HHhcCCCcceeeeccCCCCCCccc
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.+-.|.+ +.-.|+||||||+++
T Consensus 167 ~i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 167 GIAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHTCC--EEEEESTTSCHHHHH
T ss_pred hccCCCE--EEEECCCCCCHHHHH
Confidence 4445654 556799999999986
No 212
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.24 E-value=31 Score=42.93 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHHhcCCCcceeeeccCCCCCCccc
Q 001305 95 LSVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
...-.|....++..|+||||||...
T Consensus 382 ~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 382 NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hhccccCCCcEEEEcCCCCCHHHHH
Confidence 3444566567888999999999864
No 213
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.20 E-value=3.3e+02 Score=28.37 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001305 394 EQVIEEMDRQIRELTKERDLAKSRVDNLLQSIGE 427 (1104)
Q Consensus 394 e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~~ 427 (1104)
...+..|++++..|+..++.++.++.+|.+.-.+
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3446777788888888888887777777765443
No 214
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.98 E-value=16 Score=42.12 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=19.6
Q ss_pred HhcCCCcceeeeccCCCCCCccc
Q 001305 97 VVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM 119 (1104)
++.|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999754
No 215
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.90 E-value=38 Score=43.95 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCcceeeeccCCCCCCcc
Q 001305 85 VYEEAAKEVTLSVVNGINSTFFAYGQTSSGKTYT 118 (1104)
Q Consensus 85 VYe~vv~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1104)
||.-+-...-.-+-.+.|-||+..|.+|||||.+
T Consensus 152 i~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 152 IYAIADTAYRSMLQDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred HhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHH
No 216
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=22.90 E-value=19 Score=36.58 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.7
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666799999999875
No 217
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=22.82 E-value=17 Score=36.14 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.5
Q ss_pred eeeeccCCCCCCccc
Q 001305 105 FFAYGQTSSGKTYTM 119 (1104)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1104)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 218
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=22.69 E-value=33 Score=42.22 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.2
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
-.+.|-||+.-|.+|||||.+.
T Consensus 90 ~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 4799999999999999999875
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=22.26 E-value=17 Score=36.08 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.0
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 220
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=22.00 E-value=17 Score=39.68 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=16.5
Q ss_pred HHhcCCCcceeeeccCCCCCCccc
Q 001305 96 SVVNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1104)
.++.|++-.|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 467899999999999999999765
No 221
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=21.80 E-value=23 Score=42.39 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHhcCCCcceeeeccCCCCCCcccCCC
Q 001305 94 TLSVVNGINSTFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1104)
+..++. +..++..|..|||||+|+..+
T Consensus 198 v~~~~~--~~~~~I~G~pGTGKTt~i~~l 224 (574)
T 3e1s_A 198 LDQLAG--HRLVVLTGGPGTGKSTTTKAV 224 (574)
T ss_dssp HHHHTT--CSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHh--CCEEEEEcCCCCCHHHHHHHH
Confidence 334444 356777899999999997543
No 222
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=21.67 E-value=17 Score=35.61 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.6
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|.-.|+.|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999865
No 223
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=21.64 E-value=31 Score=43.13 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=35.1
Q ss_pred cceeeeccCCCCCCccc-----------------------CCChHhHHHHHHHHhhhcccceEEEEeeEEEEeccccccc
Q 001305 103 STFFAYGQTSSGKTYTM-----------------------GGITEYAIQDIYDYIDTHQEREFVLKFSAMEIYNESVRDL 159 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DL 159 (1104)
..|+-||+.|+|||+.. .|-.+..++.+|........ .=||-+.|--|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P---------~IifiDEiDsl 582 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP---------CVLFFDELDSI 582 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCS---------EEEECSCGGGC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCC---------ceeechhhhHH
Confidence 45889999999999876 16667889999987755432 22455666666
Q ss_pred CC
Q 001305 160 LS 161 (1104)
Q Consensus 160 Ls 161 (1104)
+.
T Consensus 583 ~~ 584 (806)
T 3cf2_A 583 AK 584 (806)
T ss_dssp C-
T ss_pred hh
Confidence 53
No 224
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.62 E-value=15 Score=39.32 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.9
Q ss_pred cceeeeccCCCCCCcccCCC
Q 001305 103 STFFAYGQTSSGKTYTMGGI 122 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM~GI 122 (1104)
..||..|..|+||||+|..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHH
Confidence 45899999999999998643
No 225
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.21 E-value=1.3e+02 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001305 392 EKEQVIEEMDRQIRELTKERDLAKSRVDNLLQSIG 426 (1104)
Q Consensus 392 e~e~~i~ele~qi~EL~~erd~~q~~i~~L~q~~~ 426 (1104)
.+...+.+|+.++.+|..++..+..++..|.+.++
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888888899998888888888888776543
No 226
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.17 E-value=37 Score=42.28 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
-.+.|-||+.-|.+|||||.+.
T Consensus 168 ~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 168 DDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hhcCCcEEEEecCCCCcchHHH
Confidence 3799999999999999999875
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.17 E-value=41 Score=37.97 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.0
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5667899999999987
No 228
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=21.05 E-value=25 Score=35.96 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.1
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999886
No 229
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=20.99 E-value=37 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
-.+.|-||+.-|.+|||||.+.
T Consensus 136 ~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 136 VLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEEcCCCCCCceehH
Confidence 3799999999999999999885
No 230
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=20.97 E-value=18 Score=36.51 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.5
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.+.-.|++|||||+++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999886
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=20.90 E-value=14 Score=37.99 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=17.7
Q ss_pred ceeeeccCCCCCCcccCCChHhH
Q 001305 104 TFFAYGQTSSGKTYTMGGITEYA 126 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ra 126 (1104)
.++-||..|||||..+.++..++
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999998876654443
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.86 E-value=34 Score=41.86 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.5
Q ss_pred ceeeeccCCCCCCccc
Q 001305 104 TFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1104)
.|+-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999875
No 233
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=20.84 E-value=21 Score=34.32 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.0
Q ss_pred ceeeeccCCCCCCcc
Q 001305 104 TFFAYGQTSSGKTYT 118 (1104)
Q Consensus 104 tIfAYGQTGSGKTyT 118 (1104)
.|+..|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999985
No 234
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.71 E-value=33 Score=36.45 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.2
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..++.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999876
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.22 E-value=23 Score=38.86 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.1
Q ss_pred cceeeeccCCCCCCccc
Q 001305 103 STFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1104)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999987
No 236
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.15 E-value=39 Score=43.35 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred hcCCCcceeeeccCCCCCCccc
Q 001305 98 VNGINSTFFAYGQTSSGKTYTM 119 (1104)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1104)
-.+.|-||+..|.+|||||.+.
T Consensus 168 ~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 168 DDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHTCCEEEEEEESTTSSHHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchHH
Confidence 3799999999999999999885
Done!