Query 001307
Match_columns 1103
No_of_seqs 390 out of 3072
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 21:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 9E-140 2E-144 1179.5 108.8 1059 19-1103 1-1074(1075)
2 KOG2023 Nuclear transport rece 100.0 1.4E-72 3E-77 590.8 57.5 807 22-1103 13-884 (885)
3 KOG1241 Karyopherin (importin) 100.0 4.8E-59 1E-63 498.6 66.5 763 23-880 2-822 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 1.5E-47 3.3E-52 395.4 61.5 676 21-744 3-811 (858)
5 KOG2171 Karyopherin (importin) 100.0 1.1E-34 2.3E-39 329.5 78.9 822 106-1054 7-981 (1075)
6 KOG1991 Nuclear transport rece 100.0 1.7E-33 3.8E-38 312.7 72.8 868 19-1102 1-998 (1010)
7 KOG1824 TATA-binding protein-i 100.0 1.2E-27 2.6E-32 262.6 69.1 852 26-993 9-966 (1233)
8 KOG1992 Nuclear export recepto 100.0 1.2E-25 2.5E-30 244.6 65.6 603 19-640 2-686 (960)
9 KOG1241 Karyopherin (importin) 100.0 8.3E-27 1.8E-31 251.7 56.2 660 11-744 23-813 (859)
10 KOG2023 Nuclear transport rece 100.0 4E-27 8.6E-32 249.4 51.9 670 31-800 57-820 (885)
11 KOG1824 TATA-binding protein-i 100.0 2.4E-24 5.1E-29 236.9 73.2 972 23-1074 48-1184(1233)
12 KOG1993 Nuclear transport rece 100.0 1.5E-22 3.3E-27 219.4 65.7 517 24-555 2-624 (978)
13 KOG2274 Predicted importin 9 [ 99.9 5.7E-22 1.2E-26 218.6 59.5 602 19-643 1-668 (1005)
14 COG5656 SXM1 Importin, protein 99.9 3.2E-19 7E-24 192.3 67.7 483 21-516 2-555 (970)
15 KOG0213 Splicing factor 3b, su 99.9 2.8E-19 6.1E-24 192.0 56.4 736 184-1090 364-1122(1172)
16 COG5215 KAP95 Karyopherin (imp 99.9 9.6E-18 2.1E-22 175.5 60.5 706 116-993 17-814 (858)
17 KOG0213 Splicing factor 3b, su 99.9 4.2E-17 9.2E-22 175.5 61.3 686 22-801 363-1111(1172)
18 KOG0915 Uncharacterized conser 99.9 2.1E-17 4.5E-22 192.2 49.7 470 230-772 817-1324(1702)
19 PLN03200 cellulose synthase-in 99.9 3.5E-16 7.6E-21 194.6 61.6 742 22-912 13-812 (2102)
20 KOG2022 Nuclear transport rece 99.9 2E-14 4.3E-19 159.4 65.7 603 20-643 5-755 (982)
21 KOG2021 Nuclear mRNA export fa 99.8 7E-16 1.5E-20 167.1 51.7 601 23-643 4-747 (980)
22 COG5181 HSH155 U2 snRNP splice 99.8 2E-16 4.4E-21 167.0 45.7 725 198-1090 181-927 (975)
23 PLN03200 cellulose synthase-in 99.8 3.5E-14 7.6E-19 177.1 65.2 680 24-798 60-812 (2102)
24 COG5181 HSH155 U2 snRNP splice 99.8 9.4E-15 2E-19 154.6 50.6 691 19-801 165-916 (975)
25 COG5101 CRM1 Importin beta-rel 99.8 2.9E-12 6.3E-17 136.4 65.0 497 19-536 11-652 (1053)
26 COG5657 CSE1 CAS/CSE protein i 99.8 8.8E-14 1.9E-18 155.5 47.5 543 23-577 5-609 (947)
27 KOG1242 Protein containing ada 99.7 2.4E-14 5.2E-19 155.0 38.1 476 116-644 29-545 (569)
28 KOG0915 Uncharacterized conser 99.7 3.7E-12 8.1E-17 149.4 53.4 640 97-930 812-1488(1702)
29 KOG1991 Nuclear transport rece 99.7 6E-10 1.3E-14 126.6 68.8 567 116-779 16-654 (1010)
30 KOG1242 Protein containing ada 99.7 8.5E-14 1.8E-18 150.8 36.9 439 57-555 97-546 (569)
31 KOG1248 Uncharacterized conser 99.6 1.3E-09 2.7E-14 126.6 63.7 731 58-916 95-903 (1176)
32 KOG2081 Nuclear transport regu 99.6 2.1E-11 4.7E-16 130.3 38.3 466 40-536 2-540 (559)
33 PTZ00429 beta-adaptin; Provisi 99.6 3.4E-10 7.3E-15 132.5 50.2 476 18-576 63-545 (746)
34 KOG0212 Uncharacterized conser 99.6 8.2E-12 1.8E-16 132.1 32.2 394 107-535 4-409 (675)
35 KOG0212 Uncharacterized conser 99.6 1E-10 2.2E-15 123.9 39.9 412 188-643 4-424 (675)
36 PF01602 Adaptin_N: Adaptin N 99.5 1.4E-10 3E-15 137.7 43.4 491 22-598 7-501 (526)
37 PF01602 Adaptin_N: Adaptin N 99.5 1.6E-10 3.6E-15 137.1 40.4 482 17-576 36-523 (526)
38 KOG1248 Uncharacterized conser 99.4 1.6E-06 3.5E-11 101.6 65.8 773 206-1101 72-920 (1176)
39 PTZ00429 beta-adaptin; Provisi 99.4 3.2E-08 7E-13 116.1 53.1 424 118-624 47-473 (746)
40 KOG0166 Karyopherin (importin) 99.4 8.1E-11 1.8E-15 127.5 27.7 359 187-579 69-438 (514)
41 KOG0166 Karyopherin (importin) 99.4 3.6E-11 7.8E-16 130.1 24.8 360 145-535 68-439 (514)
42 KOG1992 Nuclear export recepto 99.4 4.9E-07 1.1E-11 101.0 55.7 701 68-924 16-807 (960)
43 KOG0211 Protein phosphatase 2A 99.4 3.7E-09 8.1E-14 122.1 37.3 539 23-623 121-665 (759)
44 KOG0211 Protein phosphatase 2A 99.4 4.2E-09 9.1E-14 121.7 37.0 565 117-796 95-663 (759)
45 PF10508 Proteasom_PSMB: Prote 99.3 6.1E-08 1.3E-12 111.3 39.5 394 108-533 43-463 (503)
46 KOG2274 Predicted importin 9 [ 99.2 3.9E-06 8.6E-11 95.1 48.2 283 762-1091 485-794 (1005)
47 PF08506 Cse1: Cse1; InterPro 99.2 7E-09 1.5E-13 112.2 24.6 272 205-485 56-370 (370)
48 COG5064 SRP1 Karyopherin (impo 99.1 1.4E-09 3E-14 108.0 16.1 361 145-577 73-443 (526)
49 PRK09687 putative lyase; Provi 99.1 1.1E-08 2.3E-13 107.2 23.6 253 187-573 26-278 (280)
50 PF10508 Proteasom_PSMB: Prote 99.1 2.8E-07 6.2E-12 105.9 36.4 426 22-491 3-463 (503)
51 KOG1943 Beta-tubulin folding c 99.1 4.8E-05 1E-09 88.5 52.2 476 99-625 337-840 (1133)
52 KOG1943 Beta-tubulin folding c 99.1 0.00011 2.4E-09 85.6 53.8 369 314-742 65-500 (1133)
53 KOG1060 Vesicle coat complex A 99.1 2.9E-06 6.3E-11 94.5 38.5 477 107-649 39-556 (968)
54 PRK13800 putative oxidoreducta 99.0 4E-08 8.7E-13 121.6 27.1 274 145-529 623-896 (897)
55 PRK13800 putative oxidoreducta 99.0 2.2E-08 4.8E-13 123.9 24.8 273 106-487 624-896 (897)
56 PF12755 Vac14_Fab1_bd: Vacuol 99.0 2.6E-09 5.6E-14 90.3 10.9 94 393-489 2-95 (97)
57 PF12460 MMS19_C: RNAPII trans 99.0 1.2E-06 2.5E-11 98.9 35.6 381 146-551 2-413 (415)
58 KOG1060 Vesicle coat complex A 99.0 8.6E-07 1.9E-11 98.5 32.9 440 24-537 73-538 (968)
59 KOG1062 Vesicle coat complex A 99.0 2.3E-06 4.9E-11 95.9 36.2 428 140-627 100-549 (866)
60 KOG1020 Sister chromatid cohes 98.9 0.00063 1.4E-08 82.2 55.9 114 455-580 811-924 (1692)
61 PRK09687 putative lyase; Provi 98.9 6.2E-07 1.3E-11 94.0 25.6 230 19-302 20-249 (280)
62 PF12348 CLASP_N: CLASP N term 98.9 1.2E-07 2.5E-12 98.2 19.3 188 381-580 11-209 (228)
63 KOG1240 Protein kinase contain 98.9 1.3E-07 2.9E-12 109.6 20.5 304 143-494 422-729 (1431)
64 KOG2021 Nuclear mRNA export fa 98.9 0.00025 5.5E-09 79.1 44.2 509 430-1036 205-772 (980)
65 KOG1059 Vesicle coat complex A 98.8 3.5E-05 7.6E-10 85.4 36.9 209 68-303 155-365 (877)
66 KOG2020 Nuclear transport rece 98.8 0.0014 3E-08 79.3 58.4 133 34-174 24-164 (1041)
67 COG5064 SRP1 Karyopherin (impo 98.8 2.2E-06 4.8E-11 85.7 23.3 397 59-529 74-493 (526)
68 KOG1993 Nuclear transport rece 98.8 0.00081 1.8E-08 75.8 56.6 506 476-1103 412-976 (978)
69 KOG1062 Vesicle coat complex A 98.8 0.00095 2.1E-08 75.6 45.8 419 104-580 108-547 (866)
70 KOG1061 Vesicle coat complex A 98.7 2.6E-05 5.6E-10 88.0 32.6 474 24-576 51-527 (734)
71 KOG0891 DNA-dependent protein 98.7 0.00046 9.9E-09 89.9 47.7 549 357-987 112-762 (2341)
72 PF03378 CAS_CSE1: CAS/CSE pro 98.7 6.5E-05 1.4E-09 83.6 35.4 235 493-782 16-257 (435)
73 KOG1059 Vesicle coat complex A 98.7 4.5E-05 9.8E-10 84.5 31.4 262 142-493 143-404 (877)
74 PF12460 MMS19_C: RNAPII trans 98.6 5.7E-05 1.2E-09 85.3 32.1 368 246-642 17-414 (415)
75 KOG1240 Protein kinase contain 98.6 1.9E-05 4.1E-10 92.4 28.0 286 198-536 436-729 (1431)
76 COG5240 SEC21 Vesicle coat com 98.6 0.00066 1.4E-08 73.4 36.8 288 182-531 262-554 (898)
77 PF12348 CLASP_N: CLASP N term 98.6 1.1E-06 2.3E-11 91.1 15.9 186 352-544 21-218 (228)
78 KOG4224 Armadillo repeat prote 98.6 1.3E-05 2.8E-10 81.2 22.3 386 108-533 90-494 (550)
79 COG5656 SXM1 Importin, protein 98.6 0.0034 7.3E-08 70.5 68.1 499 102-642 3-588 (970)
80 KOG1020 Sister chromatid cohes 98.5 0.0068 1.5E-07 73.8 53.7 146 140-301 813-958 (1692)
81 PF03810 IBN_N: Importin-beta 98.5 3.4E-07 7.4E-12 75.6 7.9 67 42-113 1-76 (77)
82 COG5240 SEC21 Vesicle coat com 98.5 0.0035 7.6E-08 68.1 40.4 407 104-579 23-444 (898)
83 KOG0392 SNF2 family DNA-depend 98.5 0.0078 1.7E-07 71.8 46.2 226 68-304 88-326 (1549)
84 KOG4224 Armadillo repeat prote 98.5 5.1E-06 1.1E-10 84.0 15.3 356 183-579 84-448 (550)
85 KOG2032 Uncharacterized conser 98.5 5E-05 1.1E-09 80.9 23.3 167 375-542 215-381 (533)
86 KOG2022 Nuclear transport rece 98.5 0.0035 7.6E-08 72.0 39.0 158 432-597 481-639 (982)
87 KOG1820 Microtubule-associated 98.5 1.1E-05 2.3E-10 94.8 20.4 209 371-592 247-458 (815)
88 PF12755 Vac14_Fab1_bd: Vacuol 98.4 6.9E-07 1.5E-11 75.6 7.5 87 434-523 2-88 (97)
89 cd00020 ARM Armadillo/beta-cat 98.3 2.6E-06 5.6E-11 78.1 9.9 112 378-490 8-120 (120)
90 KOG4535 HEAT and armadillo rep 98.3 0.00045 9.7E-09 73.1 26.6 453 117-599 9-582 (728)
91 PF13513 HEAT_EZ: HEAT-like re 98.3 1.2E-06 2.5E-11 66.5 5.7 55 391-445 1-55 (55)
92 KOG0168 Putative ubiquitin fus 98.3 0.0022 4.7E-08 73.1 31.6 208 416-630 209-421 (1051)
93 PF04510 DUF577: Family of unk 98.2 9.6E-05 2.1E-09 67.8 17.1 155 103-261 3-165 (174)
94 KOG1061 Vesicle coat complex A 98.1 0.0013 2.9E-08 74.6 26.9 424 24-526 88-522 (734)
95 PF03378 CAS_CSE1: CAS/CSE pro 98.1 0.0023 4.9E-08 71.5 28.0 228 455-732 21-262 (435)
96 KOG1058 Vesicle coat complex C 98.1 0.0092 2E-07 67.3 31.5 351 139-555 52-407 (948)
97 KOG4413 26S proteasome regulat 98.1 0.017 3.6E-07 58.5 29.7 346 156-532 53-439 (524)
98 KOG2259 Uncharacterized conser 98.0 0.012 2.5E-07 65.5 30.9 296 232-580 199-514 (823)
99 KOG2259 Uncharacterized conser 98.0 0.024 5.3E-07 63.1 33.2 292 185-535 199-514 (823)
100 PF08389 Xpo1: Exportin 1-like 98.0 6.1E-05 1.3E-09 71.9 11.2 128 118-255 2-148 (148)
101 PF13513 HEAT_EZ: HEAT-like re 98.0 1.3E-05 2.8E-10 60.7 4.8 55 432-488 1-55 (55)
102 KOG1967 DNA repair/transcripti 98.0 0.08 1.7E-06 61.7 58.7 121 857-984 884-1020(1030)
103 KOG2956 CLIP-associating prote 97.9 0.00098 2.1E-08 70.9 19.9 200 380-593 290-493 (516)
104 cd00020 ARM Armadillo/beta-cat 97.9 2E-05 4.4E-10 72.1 7.0 111 419-531 8-119 (120)
105 KOG0168 Putative ubiquitin fus 97.9 0.02 4.3E-07 65.7 30.4 374 145-553 169-652 (1051)
106 KOG1410 Nuclear transport rece 97.9 0.069 1.5E-06 59.6 46.6 147 21-174 4-159 (1082)
107 KOG2032 Uncharacterized conser 97.9 0.0085 1.8E-07 64.5 25.9 279 127-447 237-531 (533)
108 COG5096 Vesicle coat complex, 97.9 0.1 2.3E-06 61.1 40.0 137 23-173 56-196 (757)
109 KOG1078 Vesicle coat complex C 97.9 0.088 1.9E-06 60.3 36.7 289 182-533 243-533 (865)
110 KOG1058 Vesicle coat complex C 97.9 0.0056 1.2E-07 68.9 25.0 170 247-450 296-466 (948)
111 KOG2956 CLIP-associating prote 97.9 0.00042 9.2E-09 73.6 15.5 170 375-553 327-499 (516)
112 KOG0414 Chromosome condensatio 97.8 0.15 3.3E-06 61.2 68.5 160 140-303 267-428 (1251)
113 PF12717 Cnd1: non-SMC mitotic 97.8 0.0007 1.5E-08 66.2 14.9 111 390-509 1-111 (178)
114 PLN03076 ARF guanine nucleotid 97.8 0.037 8.1E-07 71.8 33.6 356 94-471 1080-1513(1780)
115 PF05804 KAP: Kinesin-associat 97.8 0.043 9.3E-07 64.7 31.5 340 104-491 291-650 (708)
116 KOG4653 Uncharacterized conser 97.8 0.0028 6E-08 72.5 20.6 234 462-744 729-966 (982)
117 PF08506 Cse1: Cse1; InterPro 97.7 0.039 8.5E-07 60.4 29.1 131 391-527 225-370 (370)
118 PF08167 RIX1: rRNA processing 97.7 0.00069 1.5E-08 65.0 13.7 138 414-553 21-164 (165)
119 KOG4524 Uncharacterized conser 97.7 0.013 2.8E-07 68.4 24.7 95 377-471 803-900 (1014)
120 KOG0413 Uncharacterized conser 97.7 0.23 4.9E-06 58.1 41.8 108 183-301 575-683 (1529)
121 KOG1967 DNA repair/transcripti 97.6 0.25 5.4E-06 57.9 58.5 268 140-438 40-318 (1030)
122 KOG4535 HEAT and armadillo rep 97.6 0.07 1.5E-06 57.2 27.0 213 431-645 362-584 (728)
123 KOG1293 Proteins containing ar 97.6 0.2 4.3E-06 56.5 31.7 143 389-533 389-534 (678)
124 PF05804 KAP: Kinesin-associat 97.6 0.017 3.7E-07 68.0 25.3 375 116-534 262-651 (708)
125 KOG4413 26S proteasome regulat 97.6 0.099 2.2E-06 53.2 26.7 290 126-449 65-379 (524)
126 PF13646 HEAT_2: HEAT repeats; 97.6 0.00034 7.3E-09 59.6 8.6 86 380-486 2-88 (88)
127 KOG1077 Vesicle coat complex A 97.5 0.26 5.5E-06 55.8 43.1 328 384-821 81-415 (938)
128 PF08167 RIX1: rRNA processing 97.5 0.0021 4.7E-08 61.6 14.2 139 140-280 22-163 (165)
129 KOG2933 Uncharacterized conser 97.5 0.0023 4.9E-08 64.7 14.0 148 379-535 90-237 (334)
130 KOG2062 26S proteasome regulat 97.5 0.14 3.1E-06 58.1 29.0 116 385-517 563-679 (929)
131 KOG1078 Vesicle coat complex C 97.5 0.33 7.2E-06 55.8 39.3 362 140-580 61-424 (865)
132 COG5096 Vesicle coat complex, 97.5 0.3 6.4E-06 57.5 32.7 166 31-215 28-196 (757)
133 PF14500 MMS19_N: Dos2-interac 97.5 0.045 9.8E-07 56.7 23.9 246 148-424 4-256 (262)
134 PF11864 DUF3384: Domain of un 97.5 0.15 3.3E-06 58.5 30.6 312 119-465 5-349 (464)
135 PF13251 DUF4042: Domain of un 97.5 0.0011 2.5E-08 63.4 11.0 143 392-534 1-176 (182)
136 PF12717 Cnd1: non-SMC mitotic 97.5 0.0033 7.2E-08 61.5 14.5 135 156-303 1-139 (178)
137 PF14500 MMS19_N: Dos2-interac 97.4 0.053 1.2E-06 56.2 23.3 243 189-467 4-257 (262)
138 KOG1077 Vesicle coat complex A 97.4 0.39 8.3E-06 54.4 40.4 291 102-453 110-439 (938)
139 cd00256 VATPase_H VATPase_H, r 97.4 0.19 4.2E-06 55.5 28.4 353 53-446 50-424 (429)
140 PF10274 ParcG: Parkin co-regu 97.4 0.0028 6.1E-08 60.0 12.4 97 458-555 36-135 (183)
141 PF04826 Arm_2: Armadillo-like 97.4 0.011 2.3E-07 60.8 17.7 190 380-582 15-210 (254)
142 PF05004 IFRD: Interferon-rela 97.4 0.025 5.5E-07 60.4 21.2 196 426-625 51-260 (309)
143 KOG1517 Guanine nucleotide bin 97.3 0.029 6.3E-07 65.8 22.0 146 390-537 570-737 (1387)
144 KOG1820 Microtubule-associated 97.3 0.0077 1.7E-07 71.5 18.1 163 376-546 294-458 (815)
145 KOG4653 Uncharacterized conser 97.3 0.028 6E-07 64.8 21.0 191 385-588 735-928 (982)
146 PF05004 IFRD: Interferon-rela 97.3 0.042 9.1E-07 58.8 21.6 205 387-598 53-281 (309)
147 PLN03076 ARF guanine nucleotid 97.3 1.4 3.1E-05 57.9 45.1 197 68-267 1148-1383(1780)
148 PF02985 HEAT: HEAT repeat; I 97.2 0.00044 9.5E-09 44.6 3.5 30 419-448 1-30 (31)
149 PF05918 API5: Apoptosis inhib 97.2 0.056 1.2E-06 61.2 21.6 140 143-303 23-162 (556)
150 PF04826 Arm_2: Armadillo-like 97.1 0.015 3.3E-07 59.7 15.7 186 106-303 15-205 (254)
151 KOG4524 Uncharacterized conser 97.1 1 2.2E-05 53.4 51.5 116 438-557 568-687 (1014)
152 KOG2025 Chromosome condensatio 97.1 0.84 1.8E-05 52.0 35.0 168 23-215 86-261 (892)
153 KOG2759 Vacuolar H+-ATPase V1 97.0 0.62 1.3E-05 49.9 26.7 353 56-447 65-438 (442)
154 PF13646 HEAT_2: HEAT repeats; 97.0 0.0076 1.7E-07 51.1 10.3 87 106-210 2-88 (88)
155 PF13251 DUF4042: Domain of un 97.0 0.011 2.4E-07 56.8 12.0 141 119-262 1-176 (182)
156 PF05918 API5: Apoptosis inhib 96.9 0.98 2.1E-05 51.6 28.2 155 68-242 33-189 (556)
157 PF08064 UME: UME (NUC010) dom 96.8 0.015 3.2E-07 50.8 10.8 98 497-600 5-106 (107)
158 PF10521 DUF2454: Protein of u 96.8 0.043 9.4E-07 58.2 16.5 167 389-556 87-277 (282)
159 TIGR02270 conserved hypothetic 96.8 0.34 7.3E-06 54.0 23.4 151 58-259 56-206 (410)
160 PF10274 ParcG: Parkin co-regu 96.8 0.021 4.6E-07 54.2 12.0 92 375-467 36-131 (183)
161 COG1413 FOG: HEAT repeat [Ener 96.8 0.45 9.7E-06 52.6 24.9 262 184-532 43-304 (335)
162 KOG0946 ER-Golgi vesicle-tethe 96.8 1.7 3.6E-05 50.4 41.8 120 142-262 121-243 (970)
163 KOG0413 Uncharacterized conser 96.7 0.97 2.1E-05 53.2 25.9 145 391-551 945-1090(1529)
164 PF11865 DUF3385: Domain of un 96.7 0.019 4.1E-07 54.5 11.0 146 374-533 7-158 (160)
165 PF12719 Cnd3: Nuclear condens 96.6 0.078 1.7E-06 57.0 17.1 112 416-533 24-144 (298)
166 smart00802 UME Domain in UVSB 96.6 0.026 5.6E-07 48.8 10.3 97 497-599 5-105 (107)
167 PF08569 Mo25: Mo25-like; Int 96.6 1.4 3E-05 47.5 27.9 189 107-304 80-284 (335)
168 KOG2160 Armadillo/beta-catenin 96.6 0.12 2.6E-06 54.2 17.0 147 388-536 94-244 (342)
169 KOG1293 Proteins containing ar 96.6 2 4.3E-05 48.9 32.3 142 562-744 391-535 (678)
170 KOG1243 Protein kinase [Genera 96.4 0.056 1.2E-06 61.4 14.4 255 241-535 264-518 (690)
171 PF13001 Ecm29: Proteasome sta 96.4 1.9 4.2E-05 50.0 27.7 176 354-536 253-447 (501)
172 PF12719 Cnd3: Nuclear condens 96.4 0.85 1.8E-05 49.1 23.1 167 380-555 30-208 (298)
173 PF02985 HEAT: HEAT repeat; I 96.4 0.0072 1.6E-07 38.9 4.3 31 378-408 1-31 (31)
174 cd00256 VATPase_H VATPase_H, r 96.2 2.6 5.6E-05 46.9 25.6 351 142-531 52-424 (429)
175 COG1413 FOG: HEAT repeat [Ener 96.2 0.39 8.5E-06 53.0 20.1 187 22-259 43-241 (335)
176 KOG4500 Rho/Rac GTPase guanine 96.2 2.3 4.9E-05 45.7 24.7 137 376-516 314-458 (604)
177 KOG1949 Uncharacterized conser 96.2 0.35 7.6E-06 54.7 18.5 219 68-303 99-331 (1005)
178 PF05536 Neurochondrin: Neuroc 96.0 4.5 9.7E-05 47.3 31.2 186 391-582 71-266 (543)
179 KOG2160 Armadillo/beta-catenin 95.9 2.9 6.2E-05 44.3 22.8 170 32-216 93-284 (342)
180 smart00802 UME Domain in UVSB 95.9 0.058 1.3E-06 46.7 8.8 99 410-512 3-105 (107)
181 PF01603 B56: Protein phosphat 95.9 0.74 1.6E-05 51.8 20.1 239 20-270 131-380 (409)
182 PF08064 UME: UME (NUC010) dom 95.9 0.075 1.6E-06 46.5 9.5 99 411-513 4-106 (107)
183 PF08623 TIP120: TATA-binding 95.9 0.031 6.6E-07 52.6 7.5 126 947-1079 3-150 (169)
184 KOG2062 26S proteasome regulat 95.8 0.075 1.6E-06 60.2 11.5 154 380-555 522-676 (929)
185 TIGR02270 conserved hypothetic 95.8 3.4 7.4E-05 46.1 24.5 152 21-212 53-205 (410)
186 COG5116 RPN2 26S proteasome re 95.8 0.084 1.8E-06 57.8 11.4 153 381-555 520-673 (926)
187 KOG0946 ER-Golgi vesicle-tethe 95.8 5.5 0.00012 46.4 31.8 179 142-330 21-217 (970)
188 KOG2149 Uncharacterized conser 95.7 0.22 4.7E-06 53.1 13.9 132 421-554 61-192 (393)
189 PF11865 DUF3385: Domain of un 95.7 0.11 2.3E-06 49.5 10.7 147 416-577 8-157 (160)
190 KOG2933 Uncharacterized conser 95.7 0.16 3.5E-06 51.8 12.2 127 358-493 108-237 (334)
191 KOG0889 Histone acetyltransfer 95.6 16 0.00034 50.7 52.7 526 177-741 714-1305(3550)
192 KOG1517 Guanine nucleotide bin 95.6 0.7 1.5E-05 55.0 18.4 231 20-264 470-736 (1387)
193 PF12231 Rif1_N: Rap1-interact 95.6 4.9 0.00011 44.7 33.7 166 411-582 32-209 (372)
194 KOG0414 Chromosome condensatio 95.4 9.9 0.00021 46.7 59.0 153 22-175 270-431 (1251)
195 PF13001 Ecm29: Proteasome sta 95.3 7.7 0.00017 45.1 32.5 83 24-114 25-113 (501)
196 KOG1851 Uncharacterized conser 95.3 12 0.00027 47.4 31.7 176 356-537 1505-1683(1710)
197 KOG2137 Protein kinase [Signal 95.2 3.1 6.6E-05 48.2 21.4 133 140-282 386-518 (700)
198 KOG2025 Chromosome condensatio 95.0 9.3 0.0002 44.1 36.2 109 373-486 81-189 (892)
199 PF12231 Rif1_N: Rap1-interact 94.9 8 0.00017 43.0 33.5 316 198-575 6-350 (372)
200 PF04118 Dopey_N: Dopey, N-ter 94.9 5.7 0.00012 42.2 21.2 112 408-528 128-250 (307)
201 KOG2137 Protein kinase [Signal 94.9 1.5 3.2E-05 50.7 17.8 230 390-642 286-516 (700)
202 PF08767 CRM1_C: CRM1 C termin 94.8 2.5 5.3E-05 45.8 19.1 109 518-629 42-156 (319)
203 COG5095 TAF6 Transcription ini 94.8 1.2 2.6E-05 45.1 14.8 152 411-578 194-360 (450)
204 PF10521 DUF2454: Protein of u 94.7 0.83 1.8E-05 48.5 14.9 147 451-600 111-275 (282)
205 KOG1525 Sister chromatid cohes 94.6 19 0.0004 46.1 41.6 159 359-520 243-441 (1266)
206 PF01603 B56: Protein phosphat 94.6 5 0.00011 45.2 21.5 204 94-303 143-370 (409)
207 PF03224 V-ATPase_H_N: V-ATPas 94.6 5.8 0.00013 43.1 21.5 202 53-265 52-274 (312)
208 KOG0392 SNF2 family DNA-depend 94.4 18 0.00038 44.9 49.7 156 139-304 71-238 (1549)
209 KOG0567 HEAT repeat-containing 94.4 3.2 7E-05 41.8 16.5 88 380-489 39-128 (289)
210 PF08767 CRM1_C: CRM1 C termin 94.4 4.7 0.0001 43.6 19.9 100 390-489 133-243 (319)
211 COG5095 TAF6 Transcription ini 94.2 2.6 5.7E-05 42.7 15.8 140 770-943 200-361 (450)
212 COG5218 YCG1 Chromosome conden 94.2 12 0.00026 42.1 30.5 164 23-210 92-262 (885)
213 KOG0891 DNA-dependent protein 94.1 33 0.00072 47.0 67.5 263 425-740 488-761 (2341)
214 KOG2549 Transcription initiati 94.1 1.3 2.9E-05 49.2 14.7 153 360-513 226-393 (576)
215 PF12530 DUF3730: Protein of u 94.1 6.7 0.00014 40.3 19.4 197 34-246 13-218 (234)
216 cd08050 TAF6 TATA Binding Prot 94.0 0.41 8.9E-06 52.2 11.1 128 360-488 197-338 (343)
217 PF10363 DUF2435: Protein of u 93.7 0.98 2.1E-05 38.0 10.3 83 461-553 4-86 (92)
218 KOG0803 Predicted E3 ubiquitin 93.6 10 0.00022 48.4 22.9 107 188-301 45-151 (1312)
219 KOG2149 Uncharacterized conser 93.6 1.1 2.3E-05 48.1 12.6 126 384-511 65-190 (393)
220 KOG1243 Protein kinase [Genera 93.5 1.2 2.5E-05 51.2 13.5 192 269-494 327-519 (690)
221 KOG1048 Neural adherens juncti 93.5 17 0.00037 42.8 22.9 364 141-531 230-640 (717)
222 KOG2549 Transcription initiati 93.2 5.7 0.00012 44.4 17.7 165 412-593 205-386 (576)
223 PF11864 DUF3384: Domain of un 93.2 20 0.00043 41.4 39.3 243 37-303 5-285 (464)
224 KOG1837 Uncharacterized conser 93.1 34 0.00075 43.7 27.4 72 564-643 1520-1591(1621)
225 PF00790 VHS: VHS domain; Int 93.0 1.8 4E-05 40.2 12.2 95 500-594 39-135 (140)
226 cd08050 TAF6 TATA Binding Prot 92.7 1 2.2E-05 49.2 11.4 130 411-555 175-320 (343)
227 PF12054 DUF3535: Domain of un 92.6 16 0.00035 41.5 21.1 203 433-647 102-367 (441)
228 KOG1949 Uncharacterized conser 92.5 8.3 0.00018 44.3 17.8 140 29-173 181-332 (1005)
229 KOG1222 Kinesin associated pro 92.4 20 0.00043 39.4 22.7 93 395-489 281-373 (791)
230 PF05536 Neurochondrin: Neuroc 92.3 28 0.0006 40.9 39.1 181 517-747 71-266 (543)
231 PF08623 TIP120: TATA-binding 92.2 2.4 5.2E-05 40.2 11.6 97 455-555 4-117 (169)
232 COG5218 YCG1 Chromosome conden 92.1 25 0.00053 39.8 22.5 244 150-443 18-262 (885)
233 COG5116 RPN2 26S proteasome re 92.1 0.92 2E-05 50.1 9.8 114 386-516 561-675 (926)
234 PF10363 DUF2435: Protein of u 92.0 1.9 4.2E-05 36.3 9.8 75 186-267 5-79 (92)
235 PF04118 Dopey_N: Dopey, N-ter 91.9 4.1 8.9E-05 43.3 14.3 149 387-537 21-172 (307)
236 KOG2759 Vacuolar H+-ATPase V1 91.2 26 0.00055 38.2 26.4 346 98-490 80-438 (442)
237 KOG0567 HEAT repeat-containing 91.0 19 0.00042 36.5 18.8 109 392-532 171-280 (289)
238 cd03561 VHS VHS domain family; 90.6 3.2 6.9E-05 38.2 10.7 80 416-495 35-117 (133)
239 KOG2122 Beta-catenin-binding p 90.1 66 0.0014 41.1 26.2 55 931-991 549-604 (2195)
240 KOG0889 Histone acetyltransfer 89.9 1.1E+02 0.0024 43.3 52.8 110 191-304 12-127 (3550)
241 KOG2122 Beta-catenin-binding p 89.9 56 0.0012 41.7 22.2 74 418-492 530-603 (2195)
242 PF01347 Vitellogenin_N: Lipop 89.2 33 0.00071 41.7 21.2 99 181-299 487-585 (618)
243 cd03568 VHS_STAM VHS domain fa 89.2 8.3 0.00018 35.9 12.2 80 500-582 34-115 (144)
244 cd03568 VHS_STAM VHS domain fa 89.0 4.7 0.0001 37.5 10.4 78 417-494 36-114 (144)
245 PF14664 RICTOR_N: Rapamycin-i 88.9 41 0.00089 37.3 19.4 150 139-303 21-176 (371)
246 cd03569 VHS_Hrs_Vps27p VHS dom 88.9 3.7 8.1E-05 38.1 9.7 79 417-495 40-119 (142)
247 smart00288 VHS Domain present 88.9 8.6 0.00019 35.3 12.0 79 500-580 34-114 (133)
248 PF00514 Arm: Armadillo/beta-c 88.7 0.76 1.6E-05 31.9 3.9 29 418-446 12-40 (41)
249 KOG1048 Neural adherens juncti 88.5 47 0.001 39.4 20.0 65 22-88 233-306 (717)
250 PF08389 Xpo1: Exportin 1-like 88.5 4.7 0.0001 37.9 10.7 119 360-485 10-148 (148)
251 PF12054 DUF3535: Domain of un 88.2 41 0.00089 38.3 19.3 173 356-535 105-345 (441)
252 PF03224 V-ATPase_H_N: V-ATPas 87.7 16 0.00035 39.6 15.4 124 154-281 68-200 (312)
253 KOG1877 Putative transmembrane 87.2 40 0.00086 40.6 18.5 121 689-821 74-204 (819)
254 KOG3961 Uncharacterized conser 87.0 2.7 5.8E-05 40.5 7.5 93 458-552 112-207 (262)
255 KOG1848 Uncharacterized conser 86.8 71 0.0015 40.5 20.6 245 184-447 841-1132(1610)
256 PF09324 DUF1981: Domain of un 86.6 5.7 0.00012 33.1 8.5 70 182-256 15-84 (86)
257 cd03569 VHS_Hrs_Vps27p VHS dom 86.6 15 0.00032 34.2 12.1 80 500-582 38-119 (142)
258 smart00288 VHS Domain present 86.5 6.9 0.00015 35.9 9.9 78 417-494 36-115 (133)
259 PF12333 Ipi1_N: Rix1 complex 86.4 4.6 9.9E-05 35.0 8.2 62 410-471 3-64 (102)
260 PF12830 Nipped-B_C: Sister ch 86.3 20 0.00043 35.3 13.7 65 23-88 9-76 (187)
261 KOG0929 Guanine nucleotide exc 86.3 61 0.0013 42.0 20.4 165 112-282 1045-1226(1514)
262 cd03561 VHS VHS domain family; 85.8 13 0.00028 34.2 11.4 81 500-581 34-116 (133)
263 smart00638 LPD_N Lipoprotein N 85.8 88 0.0019 37.5 22.4 166 118-303 340-509 (574)
264 KOG1822 Uncharacterized conser 85.5 1.4E+02 0.003 39.6 65.5 194 104-304 52-249 (2067)
265 cd03567 VHS_GGA VHS domain fam 85.5 13 0.00028 34.3 11.0 88 417-507 37-130 (139)
266 PF01347 Vitellogenin_N: Lipop 84.7 70 0.0015 38.8 20.6 128 69-211 447-586 (618)
267 KOG1822 Uncharacterized conser 84.5 1.5E+02 0.0033 39.2 65.6 179 21-215 23-207 (2067)
268 smart00638 LPD_N Lipoprotein N 84.1 1E+02 0.0022 36.9 26.2 98 375-486 444-541 (574)
269 PF00514 Arm: Armadillo/beta-c 83.9 1.7 3.6E-05 30.1 3.6 30 459-489 11-40 (41)
270 PF11698 V-ATPase_H_C: V-ATPas 83.6 3.7 8.1E-05 36.2 6.3 69 419-490 44-115 (119)
271 PF00790 VHS: VHS domain; Int 83.5 20 0.00044 33.3 11.7 80 415-494 39-122 (140)
272 KOG3036 Protein involved in ce 82.5 30 0.00065 34.7 12.4 161 1-172 1-197 (293)
273 KOG2213 Apoptosis inhibitor 5/ 81.4 85 0.0018 34.0 22.8 53 685-742 38-90 (460)
274 PF12726 SEN1_N: SEN1 N termin 81.3 1.5E+02 0.0032 36.7 34.4 163 103-268 77-251 (727)
275 PF04388 Hamartin: Hamartin pr 81.2 21 0.00045 43.1 13.5 74 857-930 85-159 (668)
276 PF04388 Hamartin: Hamartin pr 81.2 47 0.001 40.2 16.4 96 180-281 66-161 (668)
277 COG5657 CSE1 CAS/CSE protein i 80.7 1.4E+02 0.0031 36.2 54.5 157 67-241 14-180 (947)
278 PF09324 DUF1981: Domain of un 80.4 8.4 0.00018 32.1 7.1 70 100-169 14-85 (86)
279 KOG1789 Endocytosis protein RM 80.0 1.6E+02 0.0035 36.4 22.9 138 158-303 1740-1883(2235)
280 COG5231 VMA13 Vacuolar H+-ATPa 79.8 84 0.0018 33.0 20.5 68 379-446 358-427 (432)
281 PF12530 DUF3730: Protein of u 79.8 77 0.0017 32.6 21.0 120 389-517 96-217 (234)
282 PF12765 Cohesin_HEAT: HEAT re 79.8 2.5 5.4E-05 29.5 3.1 26 417-442 17-42 (42)
283 PF12397 U3snoRNP10: U3 small 79.5 26 0.00056 31.6 10.7 73 373-448 2-75 (121)
284 PF12074 DUF3554: Domain of un 78.5 1.1E+02 0.0024 33.6 21.4 221 100-333 19-256 (339)
285 PF12333 Ipi1_N: Rix1 complex 77.8 7.3 0.00016 33.7 6.2 63 494-556 2-65 (102)
286 PF11701 UNC45-central: Myosin 77.8 13 0.00028 35.4 8.5 141 61-211 8-156 (157)
287 PF12074 DUF3554: Domain of un 77.5 1.2E+02 0.0026 33.4 20.2 177 372-554 56-254 (339)
288 PF08161 NUC173: NUC173 domain 77.5 79 0.0017 31.4 14.7 68 856-930 57-124 (198)
289 PF04510 DUF577: Family of unk 77.3 9.9 0.00021 35.8 7.1 101 521-627 60-166 (174)
290 PF11919 DUF3437: Domain of un 77.2 3.8 8.2E-05 34.3 4.1 61 392-453 4-64 (90)
291 cd03572 ENTH_epsin_related ENT 77.1 31 0.00067 30.9 9.9 75 415-490 35-119 (122)
292 PF11698 V-ATPase_H_C: V-ATPas 76.2 11 0.00024 33.3 6.8 70 143-214 43-115 (119)
293 PF14868 DUF4487: Domain of un 76.1 1.7E+02 0.0036 34.4 26.5 71 120-191 244-315 (559)
294 cd00197 VHS_ENTH_ANTH VHS, ENT 75.0 31 0.00067 30.7 9.8 74 415-488 34-113 (115)
295 PF08713 DNA_alkylation: DNA a 74.7 68 0.0015 32.4 13.6 145 376-544 50-196 (213)
296 PF08161 NUC173: NUC173 domain 74.2 96 0.0021 30.8 14.7 57 397-453 20-76 (198)
297 KOG4199 Uncharacterized conser 73.9 1.3E+02 0.0027 32.0 26.6 306 386-740 116-442 (461)
298 PF06685 DUF1186: Protein of u 73.8 71 0.0015 32.9 12.9 49 955-1007 113-162 (249)
299 cd03572 ENTH_epsin_related ENT 73.8 23 0.0005 31.7 8.3 76 500-575 35-117 (122)
300 KOG2081 Nuclear transport regu 73.6 1.7E+02 0.0038 33.5 38.1 152 430-594 401-553 (559)
301 cd03565 VHS_Tom1 VHS domain fa 73.5 33 0.00072 31.8 9.7 92 417-508 37-133 (141)
302 COG4912 Predicted DNA alkylati 73.5 17 0.00037 35.9 7.9 84 361-450 102-186 (222)
303 KOG2199 Signal transducing ada 73.0 24 0.00053 37.7 9.4 104 384-495 19-123 (462)
304 KOG0803 Predicted E3 ubiquitin 72.5 1.7E+02 0.0036 38.1 18.1 102 385-488 49-151 (1312)
305 KOG1851 Uncharacterized conser 72.3 3.1E+02 0.0068 35.9 35.1 145 778-991 1537-1681(1710)
306 PF14225 MOR2-PAG1_C: Cell mor 72.2 99 0.0022 32.3 13.9 138 58-214 113-254 (262)
307 PF12783 Sec7_N: Guanine nucle 72.0 75 0.0016 30.6 12.5 106 198-303 35-146 (168)
308 PF04078 Rcd1: Cell differenti 71.5 33 0.00072 35.1 9.8 123 860-989 70-219 (262)
309 cd03565 VHS_Tom1 VHS domain fa 71.5 87 0.0019 29.1 12.3 95 500-595 35-133 (141)
310 KOG2973 Uncharacterized conser 71.0 15 0.00034 38.0 7.3 105 422-532 7-111 (353)
311 KOG2005 26S proteasome regulat 70.6 1.5E+02 0.0033 34.6 15.3 65 378-448 641-705 (878)
312 cd03567 VHS_GGA VHS domain fam 70.4 54 0.0012 30.3 10.2 75 377-451 38-120 (139)
313 KOG1837 Uncharacterized conser 70.4 3.4E+02 0.0075 35.5 36.9 101 477-587 1520-1620(1621)
314 PF08713 DNA_alkylation: DNA a 70.4 8.2 0.00018 39.1 5.7 70 376-451 119-188 (213)
315 PF03542 Tuberin: Tuberin; In 69.9 1.8E+02 0.0038 32.0 18.1 172 140-330 138-328 (356)
316 PF12783 Sec7_N: Guanine nucle 69.1 1.1E+02 0.0024 29.4 14.7 100 156-261 35-147 (168)
317 PF07571 DUF1546: Protein of u 68.9 25 0.00054 29.8 7.1 58 852-909 18-76 (92)
318 PF11701 UNC45-central: Myosin 68.8 26 0.00056 33.3 8.2 130 354-486 21-155 (157)
319 PF07571 DUF1546: Protein of u 68.8 24 0.00052 29.9 7.0 60 154-213 17-77 (92)
320 smart00185 ARM Armadillo/beta- 68.3 6.7 0.00015 26.8 3.1 28 419-446 13-40 (41)
321 PF08569 Mo25: Mo25-like; Int 67.9 1.9E+02 0.0041 31.5 24.3 204 68-282 87-311 (335)
322 PF12765 Cohesin_HEAT: HEAT re 66.7 11 0.00024 26.2 3.9 40 167-209 3-42 (42)
323 cd00197 VHS_ENTH_ANTH VHS, ENT 66.5 69 0.0015 28.4 10.1 73 373-445 33-113 (115)
324 KOG2011 Sister chromatid cohes 66.5 3.5E+02 0.0076 34.1 18.8 126 394-523 262-390 (1048)
325 PF12726 SEN1_N: SEN1 N termin 65.6 3.4E+02 0.0074 33.6 35.4 123 417-540 119-251 (727)
326 KOG0929 Guanine nucleotide exc 65.3 2.8E+02 0.006 36.5 17.8 76 396-471 1244-1322(1514)
327 KOG2973 Uncharacterized conser 64.2 56 0.0012 34.2 9.6 104 382-490 8-111 (353)
328 PF14222 MOR2-PAG1_N: Cell mor 63.7 3.1E+02 0.0066 32.5 32.4 315 198-535 144-503 (552)
329 KOG3961 Uncharacterized conser 63.6 25 0.00054 34.3 6.6 88 508-600 119-209 (262)
330 COG5369 Uncharacterized conser 62.1 27 0.00059 39.1 7.5 136 394-531 406-544 (743)
331 KOG3723 PH domain protein Melt 61.8 2.9E+02 0.0063 31.6 17.7 82 440-532 184-266 (851)
332 PF14668 RICTOR_V: Rapamycin-i 61.8 23 0.00049 28.3 5.2 55 435-492 4-60 (73)
333 PF14225 MOR2-PAG1_C: Cell mor 61.6 2.1E+02 0.0046 29.9 21.3 124 120-261 131-255 (262)
334 cd06561 AlkD_like A new struct 61.5 30 0.00065 34.4 7.7 66 380-451 108-174 (197)
335 PF08146 BP28CT: BP28CT (NUC21 60.3 1.3E+02 0.0027 28.5 10.9 81 476-556 36-120 (153)
336 KOG3036 Protein involved in ce 59.2 1.7E+02 0.0037 29.7 11.6 75 140-215 120-198 (293)
337 PF14668 RICTOR_V: Rapamycin-i 58.6 27 0.00058 28.0 5.1 55 393-449 3-60 (73)
338 smart00185 ARM Armadillo/beta- 58.2 12 0.00026 25.5 2.9 29 460-489 12-40 (41)
339 KOG4500 Rho/Rac GTPase guanine 57.1 3.1E+02 0.0067 30.4 32.7 115 417-534 314-433 (604)
340 PF12397 U3snoRNP10: U3 small 57.0 50 0.0011 29.7 7.5 74 414-492 2-76 (121)
341 cd00872 PI3Ka_I Phosphoinositi 56.5 83 0.0018 30.3 9.0 81 20-116 37-118 (171)
342 PF14631 FancD2: Fanconi anaem 55.6 69 0.0015 42.4 10.9 171 400-577 417-587 (1426)
343 PF08146 BP28CT: BP28CT (NUC21 55.4 51 0.0011 31.1 7.4 82 563-644 36-118 (153)
344 KOG2038 CAATT-binding transcri 55.3 4.4E+02 0.0096 31.6 24.8 77 227-312 300-376 (988)
345 KOG2011 Sister chromatid cohes 54.5 5.5E+02 0.012 32.5 22.5 101 190-299 293-395 (1048)
346 PF14222 MOR2-PAG1_N: Cell mor 53.8 4.4E+02 0.0096 31.2 27.0 157 104-265 130-307 (552)
347 cd00864 PI3Ka Phosphoinositide 53.2 99 0.0021 29.2 8.9 81 20-116 37-118 (152)
348 PF12830 Nipped-B_C: Sister ch 52.6 2.4E+02 0.0052 27.7 17.4 71 105-178 10-80 (187)
349 PF10350 DUF2428: Putative dea 51.9 3E+02 0.0065 28.7 13.5 124 473-597 109-247 (255)
350 PF07539 DRIM: Down-regulated 51.3 2E+02 0.0043 26.8 10.3 81 417-512 16-97 (141)
351 COG5369 Uncharacterized conser 50.4 2.4E+02 0.0051 32.2 12.2 176 357-533 408-595 (743)
352 KOG4199 Uncharacterized conser 49.9 3.5E+02 0.0077 28.9 31.0 317 139-488 104-442 (461)
353 cd00870 PI3Ka_III Phosphoinosi 49.8 1.2E+02 0.0026 29.1 8.9 80 21-116 45-125 (166)
354 PF12612 TFCD_C: Tubulin foldi 49.7 2.2E+02 0.0047 28.2 11.3 132 416-555 5-138 (193)
355 PF03130 HEAT_PBS: PBS lyase H 49.4 13 0.00029 22.8 1.7 14 434-447 1-14 (27)
356 PF10441 Urb2: Urb2/Npa2 famil 49.2 3E+02 0.0066 28.0 14.1 44 1059-1102 169-212 (223)
357 smart00145 PI3Ka Phosphoinosit 48.8 1.3E+02 0.0027 29.5 9.2 79 21-115 43-122 (184)
358 KOG2256 Predicted protein invo 48.7 5.2E+02 0.011 30.5 18.5 180 414-597 278-475 (661)
359 KOG1222 Kinesin associated pro 48.3 4.4E+02 0.0096 29.6 24.6 78 370-449 587-665 (791)
360 KOG2085 Serine/threonine prote 46.5 4.4E+02 0.0096 29.1 13.4 224 74-303 167-414 (457)
361 PF14676 FANCI_S2: FANCI solen 46.4 1.9E+02 0.0041 27.5 9.6 117 76-209 37-156 (158)
362 PF12612 TFCD_C: Tubulin foldi 46.0 3.1E+02 0.0067 27.1 14.8 152 101-261 5-159 (193)
363 KOG1087 Cytosolic sorting prot 45.9 1.9E+02 0.0041 33.0 11.1 94 501-596 36-132 (470)
364 KOG3678 SARM protein (with ste 45.0 4.8E+02 0.01 29.1 14.9 156 6-171 161-335 (832)
365 cd07064 AlkD_like_1 A new stru 44.9 1E+02 0.0023 30.9 8.3 78 376-460 114-191 (208)
366 KOG1848 Uncharacterized conser 44.6 8.5E+02 0.018 31.8 27.2 152 117-268 855-1034(1610)
367 KOG1087 Cytosolic sorting prot 44.3 2.5E+02 0.0055 32.0 11.7 87 417-505 37-125 (470)
368 KOG2199 Signal transducing ada 44.0 1.5E+02 0.0033 32.1 9.3 75 377-451 45-122 (462)
369 KOG2038 CAATT-binding transcri 43.1 6.7E+02 0.015 30.2 28.8 114 176-303 296-409 (988)
370 PF11919 DUF3437: Domain of un 42.8 59 0.0013 27.3 5.0 58 433-493 4-61 (90)
371 cd03562 CID CID (CTD-Interacti 42.7 1.8E+02 0.0039 25.7 8.6 83 429-522 16-98 (114)
372 PF14838 INTS5_C: Integrator c 42.7 6.9E+02 0.015 30.2 24.0 86 190-276 316-405 (696)
373 PF04078 Rcd1: Cell differenti 42.6 4.1E+02 0.0089 27.6 16.3 75 140-215 91-169 (262)
374 PF12243 CTK3: CTD kinase subu 41.0 1.1E+02 0.0024 28.2 6.9 75 423-508 13-89 (139)
375 COG5098 Chromosome condensatio 40.4 7E+02 0.015 29.7 59.2 130 359-493 283-418 (1128)
376 PF11707 Npa1: Ribosome 60S bi 40.0 5.3E+02 0.012 28.2 17.2 155 145-303 58-237 (330)
377 PF11707 Npa1: Ribosome 60S bi 39.1 5.5E+02 0.012 28.0 21.8 73 232-304 57-144 (330)
378 PF11935 DUF3453: Domain of un 38.9 4.6E+02 0.0099 27.1 16.2 127 193-330 2-162 (239)
379 KOG2213 Apoptosis inhibitor 5/ 38.2 5.8E+02 0.013 28.1 23.7 97 476-583 39-143 (460)
380 PF00613 PI3Ka: Phosphoinositi 37.7 88 0.0019 30.7 6.2 80 20-115 43-123 (184)
381 cd00869 PI3Ka_II Phosphoinosit 36.9 2.3E+02 0.0051 27.2 8.6 80 20-115 37-117 (169)
382 KOG2256 Predicted protein invo 36.2 8E+02 0.017 29.1 25.8 185 456-642 278-476 (661)
383 PF11841 DUF3361: Domain of un 35.4 4E+02 0.0086 25.3 11.8 119 186-314 13-139 (160)
384 KOG4646 Uncharacterized conser 35.2 3.5E+02 0.0077 24.7 10.3 99 106-210 19-124 (173)
385 COG5101 CRM1 Importin beta-rel 34.5 8.2E+02 0.018 28.7 52.6 74 139-215 188-262 (1053)
386 PF06371 Drf_GBD: Diaphanous G 34.4 2.7E+02 0.0059 27.1 9.5 60 429-489 127-186 (187)
387 PF13925 Katanin_con80: con80 34.2 1.1E+02 0.0025 29.2 6.3 55 124-179 46-105 (164)
388 PF14664 RICTOR_N: Rapamycin-i 33.1 7.2E+02 0.016 27.7 21.3 232 231-492 25-271 (371)
389 PF07539 DRIM: Down-regulated 32.5 3.7E+02 0.0081 25.0 9.1 30 182-212 15-44 (141)
390 KOG3613 Dopey and related pred 32.2 1.4E+03 0.031 30.8 22.0 81 389-469 1499-1581(1749)
391 smart00582 RPR domain present 32.0 2.4E+02 0.0052 25.2 7.9 61 423-494 5-65 (121)
392 PLN03205 ATR interacting prote 31.6 7.2E+02 0.016 27.2 18.0 206 122-330 302-548 (652)
393 PF11229 DUF3028: Protein of u 31.4 2.3E+02 0.005 32.2 8.5 175 883-1090 1-203 (589)
394 smart00567 EZ_HEAT E-Z type HE 31.3 55 0.0012 20.5 2.5 14 391-404 1-14 (30)
395 PF01465 GRIP: GRIP domain; I 30.6 1.1E+02 0.0024 21.9 4.1 34 99-133 3-36 (46)
396 PF14228 MOR2-PAG1_mid: Cell m 30.4 1.3E+03 0.029 29.9 16.4 180 249-434 934-1118(1120)
397 PF11935 DUF3453: Domain of un 29.8 6.4E+02 0.014 26.0 15.4 93 182-275 41-160 (239)
398 KOG1789 Endocytosis protein RM 29.8 1.3E+03 0.027 29.4 27.8 150 38-196 1741-1910(2235)
399 KOG2842 Interferon-related pro 29.2 8E+02 0.017 27.0 19.3 102 388-489 71-176 (427)
400 PF14961 BROMI: Broad-minded p 28.6 1.4E+03 0.03 29.6 22.5 136 145-283 163-316 (1296)
401 KOG3687 Tuberin - Rap/ran-GTPa 28.4 1.3E+03 0.027 29.0 24.4 464 37-550 42-554 (1697)
402 PF01417 ENTH: ENTH domain; I 27.0 4.7E+02 0.01 23.6 9.9 88 358-445 20-119 (125)
403 KOG1877 Putative transmembrane 26.0 1.3E+03 0.029 28.4 24.2 85 241-327 66-150 (819)
404 PF14676 FANCI_S2: FANCI solen 25.6 4.8E+02 0.01 24.8 8.7 82 164-256 76-157 (158)
405 PF14961 BROMI: Broad-minded p 25.4 2E+02 0.0044 36.4 7.6 76 101-177 160-236 (1296)
406 COG5231 VMA13 Vacuolar H+-ATPa 24.6 8.8E+02 0.019 25.9 21.7 72 418-490 356-428 (432)
407 cd00871 PI4Ka Phosphoinositide 24.5 5.6E+02 0.012 24.9 8.9 68 39-122 55-124 (175)
408 COG5110 RPN1 26S proteasome re 24.4 1.1E+03 0.025 27.1 16.1 64 375-444 448-513 (881)
409 COG5209 RCD1 Uncharacterized p 24.3 2.9E+02 0.0063 27.5 6.9 49 882-930 146-196 (315)
410 PF14868 DUF4487: Domain of un 24.1 1.2E+03 0.027 27.5 27.2 116 418-534 434-554 (559)
411 PF08620 RPAP1_C: RPAP1-like, 24.1 1.3E+02 0.0029 24.1 3.9 31 144-174 40-70 (73)
412 PF04699 P16-Arc: ARP2/3 compl 23.9 3.5E+02 0.0077 25.5 7.3 57 1046-1102 53-110 (152)
413 PF10350 DUF2428: Putative dea 23.7 8.5E+02 0.018 25.4 14.6 128 516-645 110-251 (255)
414 KOG2059 Ras GTPase-activating 22.8 2.3E+02 0.005 33.5 6.9 86 356-442 360-445 (800)
415 KOG1525 Sister chromatid cohes 22.3 1.9E+03 0.041 29.0 53.7 336 192-577 58-405 (1266)
416 PF10193 Telomere_reg-2: Telom 22.2 4E+02 0.0087 23.7 7.1 71 500-572 4-77 (114)
417 COG1698 Uncharacterized protei 22.0 3.6E+02 0.0079 22.4 5.9 35 17-51 8-48 (93)
418 PF05997 Nop52: Nucleolar prot 21.7 5.4E+02 0.012 26.1 8.8 87 464-551 4-93 (217)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-140 Score=1179.49 Aligned_cols=1059 Identities=46% Similarity=0.767 Sum_probs=983.5
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
||.++|.+|+..+.||||++|++||+.|+....+.| .++.|.+++.+++++++||+|++++||++.++ |+.++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 577899999999999999999999999997665333 67999999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
+.++.||+.++..+.+|+.+.||+++|++|+.+++.+++. +||+++++++++.+|+++..|+.|+.+|..+.+.+++.+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcC-CcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001307 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1103)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~ 257 (1103)
.+|+..+.++|.++++|+ +..||.+|+++++.++.+.+ ++.....|.+++|.++.++...++.++.+....++++|.+
T Consensus 154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 999999999999999998 55699999999999999884 4556788999999999999999999999999999999999
Q ss_pred HHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001307 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1103)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1103)
+++..|+.+++++.+++++.++++.+++.++.+|..|++++.++++ ++|.+.|+.+++...+++.++.+|.+..+|+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 9999999999999999999999999999999999999999999999 5999999999999999999999999998889
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001307 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1103)
Q Consensus 338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1103)
+|...|+.|||+ +.+++..|.+++++++.++|++.++|.+++.+..+++|++|+.|+||+++|+.+++||.+.+.++++
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999887666554 5678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
+|++.++++++|++|+||++||.++|++++++.|++++.|++.+.|.|+..+.+..+++|+.+|+.++.+|.+.+.++.+
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999988889999999999999977889999999999999999999999
Q ss_pred cCchHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 498 ~~~l~~ll~-~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
.||++.+|+ .+.-+++++++.+|+.++.+||++|.+++..|.||++.+||.|.+++.+..+++.+.+|++.++|++.++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999 5555667788999999999999999999999999999999999999999888889999999999999999
Q ss_pred HhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCC
Q 001307 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS 656 (1103)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~ 656 (1103)
.+||++.|.|++.++|+.+..++.+..+.|++.++|.+.+|+++|+++|++|.||+|.+||.++++...+|++...|++
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~- 627 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEE- 627 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCch-
Confidence 9999999999999999999998877777889999999999999999999999999999999999999999988777433
Q ss_pred CccccCCCCcccchhhcCCc-eeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHH
Q 001307 657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS 735 (1103)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~ 735 (1103)
++.++.++++|++..++|+ .++|+|+.+++|+.||.+|++++..++..|.||++++++..++.+.+++|++||++|+.
T Consensus 628 -d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 628 -DEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred -hhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2233336678888888887 99999999999999999999999999999999999999988888899999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 001307 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDE 814 (1103)
Q Consensus 736 ~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~~~~~ 814 (1103)
+++.++.+...+... .|.++++++..+.+.++..+.+|++++++.+++++++++++.+|+ .+.++++..+...
T Consensus 707 ~~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 999999998876533 477999999999999999999999999999999999999999997 4888999999888
Q ss_pred HHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCC
Q 001307 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1103)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 894 (1103)
+...+.....+...|..+...||+|.+++|..+ |.+..+.+.+.+++..+++.+++.|.|+|..++|.+..++.+++
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence 888888877777666655444555555554444 67888999999999999999999999999999999999998777
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhc
Q 001307 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 963 (1103)
Q Consensus 895 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~ 963 (1103)
... |.+++|++++++++||+...+|++.++|.++. ||+||+|++|+++|..+.|.....++.|..++.
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 777 99999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchh
Q 001307 964 HPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLP 1043 (1103)
Q Consensus 964 ~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1043 (1103)
.+..|.+++..++|||++|++|++.++++.++.++++|.||++||+.+|.+|+...|++|+.|+++++|.+++++++++|
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip 1016 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIP 1016 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccch
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307 1044 KIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus 1044 ~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
+|+.+++..+.+......++..|++++++++.. |...|.+++++||+++|++||..+.
T Consensus 1017 ~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1017 KILSVCAESLADKKIEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred HHHHHHHhhhhccCCCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 999999999986655566666699999999987 5555999999999999999999873
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-72 Score=590.83 Aligned_cols=807 Identities=22% Similarity=0.324 Sum_probs=648.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
+|+.++|++.+|||+++|+.+...|.++.. .|+ |..+|..+|.. +.+..+|.+|+.+||+.+..+ |..++++
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~----~~~~~~~ 86 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH----YNSIPSE 86 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc----ccCCChH
Confidence 466778899999999999999999999998 787 46889998876 677888999999999999987 9999999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc-
Q 001307 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL- 178 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l- 178 (1103)
.+..+|+.+++++.+ +++.||...+.+|..|++... ...||+++|.|.+++.+++.+..++|+.+|..+++...+.+
T Consensus 87 ~~~yiKs~~l~~lgd-~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGD-ASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHHHHHhhccC-chHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 999999999999998 688999999999999988643 37999999999999999999999999999999999876543
Q ss_pred ----hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001307 179 ----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1103)
Q Consensus 179 ----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~ 254 (1103)
..-++.++|.|.+..+++ ++.+|..|+.|+..++... ...+...+..+++.++...+++++++|+..|..
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~-----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ-----TQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC-----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 235788999999999998 9999999999999887642 344566788999999999999999999999999
Q ss_pred HHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001307 255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (1103)
Q Consensus 255 l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 334 (1103)
|+-+.+..+..+.||+..+++++++... +.++++...|++||.++++ .|--...+.+|+.+++|.++..|.+.+
T Consensus 239 lv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwla~ae----qpi~~~~L~p~l~kliPvLl~~M~Ysd 312 (885)
T KOG2023|consen 239 LVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWLALAE----QPICKEVLQPYLDKLIPVLLSGMVYSD 312 (885)
T ss_pred HHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999764 5678899999999999998 342223467899999999999988654
Q ss_pred CCc---------------------ccc------------cCC-CCCcccc-----CCCchhhHHHHHHHHHHHcCCCcch
Q 001307 335 DDP---------------------LWH------------SAE-TEDEDAG-----ESSNYSVGQECLDRLAIALGGNTIV 375 (1103)
Q Consensus 335 ~~~---------------------~w~------------~~~-~e~ed~~-----~~~~~~~a~~~l~~l~~~~~~~~~~ 375 (1103)
++. .+. .+| +|||+|| +|..++.++.+++.|++.+| +.++
T Consensus 313 ~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~elL 391 (885)
T KOG2023|consen 313 DDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-DELL 391 (885)
T ss_pred ccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH-HHHH
Confidence 321 000 001 1111111 24556778899999999998 8999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (1103)
|.++|++.+.+.+++|.+|++++.++|.++|||-+.+.+|++.++|.+++.|.|..|.||..+||+|++++.+.-.+-..
T Consensus 392 ~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~ 471 (885)
T KOG2023|consen 392 PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD 471 (885)
T ss_pred HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988554446
Q ss_pred hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
+|+..++..+++.+-| ++.+|+++||+++..+-+..+++ +.||+..++..|...++.-..+-..-.+.|||++|.++|
T Consensus 472 ~~f~pvL~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg 549 (885)
T KOG2023|consen 472 EYFKPVLEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG 549 (885)
T ss_pred hhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH
Confidence 8899999999999888 89999999999999999999977 679999999999998875443333457899999999999
Q ss_pred hhhH--hhHhhhhHHHHHHHhhcCCc--ccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhh
Q 001307 536 EHFQ--KYYDAVMPFLKAILVNATDK--SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611 (1103)
Q Consensus 536 ~~~~--~~~~~i~~~l~~~l~~~~~~--~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~ 611 (1103)
..+. .|++.+||.|.+.++.-.++ +...+ ++|++.++.++| ..|.||++++.+-.+.+..
T Consensus 550 ~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~----------- 613 (885)
T KOG2023|consen 550 HALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALG-VGFLPYAQPVYQRCFRILQ----------- 613 (885)
T ss_pred HhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHh-ccccccCHHHHHHHHHHHH-----------
Confidence 8765 58999999999988753332 22222 555555555555 4455544443332211000
Q ss_pred HHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHH
Q 001307 612 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATA 691 (1103)
Q Consensus 612 ~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A 691 (1103)
++...+ . ..+.++.+.
T Consensus 614 ---~t~q~~-------------------~-~~~~~~~~~----------------------------------------- 629 (885)
T KOG2023|consen 614 ---KTLQLL-------------------A-KVQQDPTVE----------------------------------------- 629 (885)
T ss_pred ---HHHHHH-------------------H-hccCCcccc-----------------------------------------
Confidence 000000 0 000000000
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 001307 692 CNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1103)
Q Consensus 692 ~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 771 (1103)
T Consensus 630 -------------------------------------------------------------------------------- 629 (885)
T KOG2023|consen 630 -------------------------------------------------------------------------------- 629 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhh
Q 001307 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1103)
Q Consensus 772 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e 851 (1103)
-+|.
T Consensus 630 -------~pdk--------------------------------------------------------------------- 633 (885)
T KOG2023|consen 630 -------APDK--------------------------------------------------------------------- 633 (885)
T ss_pred -------CCCc---------------------------------------------------------------------
Confidence 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHH--HHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHH
Q 001307 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLL 929 (1103)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~ 929 (1103)
+.+-.+.+++..+++.+|.+..|.+.+ +...++.++ .+..+++|+.+++.+|++.++|.+.+.|+...++|.+.
T Consensus 634 ---dfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg 709 (885)
T KOG2023|consen 634 ---DFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG 709 (885)
T ss_pred ---ceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 011223344444444444444444433 555666665 57889999999999999999999999999999999887
Q ss_pred H-----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CH
Q 001307 930 E-----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DA 996 (1103)
Q Consensus 930 ~-----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~ 996 (1103)
. ||+|++|.++...+...++|+..++..|..++..++ ....+.+|.+.++||+...+|+.+ .+
T Consensus 710 ~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~----~~~tllENtAITIGrLg~~~Pe~vAp~l 785 (885)
T KOG2023|consen 710 ANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN----TPKTLLENTAITIGRLGYICPEEVAPHL 785 (885)
T ss_pred hcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC----chHHHHHhhhhhhhhhhccCHHhcchhH
Confidence 5 999999999999999999999999999999998775 368999999999999999999987 57
Q ss_pred hhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 001307 997 AQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQ 1076 (1103)
Q Consensus 997 ~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~ 1076 (1103)
+.++..|+..|....|.+|..++|+++|.++..++..+... +..|+.+.........+.+..+..+|.....
T Consensus 786 ~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~--------~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~ 857 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSS--------FIFICDAIASWSNPEDDLRDEFYKILQGFKN 857 (885)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhh--------hHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 89999999999988999999999999999999888766553 3334444443333457889999999999999
Q ss_pred hCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307 1077 TLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus 1077 ~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
+.++.+|++...++||..+..|+..++
T Consensus 858 qvg~~nW~~~~~qf~P~~~erl~a~y~ 884 (885)
T KOG2023|consen 858 QVGKINWQRFSEQFPPPLKERLQAFYG 884 (885)
T ss_pred HhhhhhHHHHhhcCChhHHHHHHHHhC
Confidence 999888999999999999999998764
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-59 Score=498.60 Aligned_cols=763 Identities=20% Similarity=0.309 Sum_probs=606.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCC-------CCccc
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~-------~~~w~ 94 (1103)
++.++|...+|||.+.|++||++|+++..+|.+.|+..|.++|.+ ..++..|..|++.|||.+..++ ...|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 466788889999999999999999999998888899999999998 6678899999999999998865 24599
Q ss_pred cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCH-hHHHHHHHHHHHhhhh
Q 001307 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQY 173 (1103)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~~l~~~ 173 (1103)
.++.+.|+++|+.+++.|.+ +.+..+..++++++.||..++|.+.||++++.+.....++.+ .+|+.++..+|.+|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 789999999999999999999999999999999998877655 5999999999999998
Q ss_pred hhh-hchhhHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHH
Q 001307 174 IGD-TLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1103)
Q Consensus 174 ~~~-~l~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~ 251 (1103)
+.+ .+..+.+.++..+..++... ++..||.+|+++|...+++...++..+.-. ..++++.++..++++.+++.++
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er---n~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMER---NYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhh---ceeeeeeeecccCCcHHHHHHH
Confidence 654 45567888888888887754 578999999999999988754333333222 3788999999999999999999
Q ss_pred HHHHHHHHccchHHHHHhHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh------------cc-chhhhcchh
Q 001307 252 LELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE------------RA-PGMMRKLPQ 317 (1103)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~------------~~-~~~~~~~~~ 317 (1103)
+.||+++...|++++.+|+.+ ++...+..+. +.++++..++++||+++|+.+- .. |........
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999999987 8888777664 5689999999999999988521 11 110111112
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 001307 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1103)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (1103)
.++.++|.+++.|...++ ++|+|+|++.++|..||..+++..| +.++|+++|++.+.+++++|+.|++|
T Consensus 316 a~~~v~P~Ll~~L~kqde----------~~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDE----------DDDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HHhHhhHHHHHHHHhCCC----------CcccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHH
Confidence 455789999998877543 2334579999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCCCCc
Q 001307 398 LIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNP 475 (1103)
Q Consensus 398 l~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~ 475 (1103)
.+++|++.++.. +.+.+...+.+|.++..+.|++-.||.++.|++|++++.++..+ ...+...+++.++..++| .|
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--eP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cc
Confidence 999999999854 46678889999999999999999999999999999999886543 235788999999999999 79
Q ss_pred chHHHHHHHHHHHHhcCCc--------ccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhhhhHhhH--
Q 001307 476 RVQAHAASAVLNFSENCTP--------EILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYY-- 542 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~--------~~l~~~l~~ll~~L~~~l~~~---~~~v~~~al~al~~l~~~~~~~~~~~~-- 542 (1103)
+|...+||++..|++.+.. +...|+++.++..|++.-+.. ....|..++++++.++..+++...|-.
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999976421 234579999999999887653 478999999999999999887655443
Q ss_pred --hhhhHHHHHHHhh-----cCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001307 543 --DAVMPFLKAILVN-----ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1103)
Q Consensus 543 --~~i~~~l~~~l~~-----~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1103)
..++..|.+.++. .+......+.+-...+++.+.+.+| ..+.++.+++|..++++.++. ....+.+.++-
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~-~~~~~~~d~iM~lflri~~s~--~s~~v~e~a~l 619 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG-SDIREVSDQIMGLFLRIFESK--RSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc-ccchhHHHHHHHHHHHHHcCC--ccccchHHHHH
Confidence 3444444444441 1112244677777889999999999 579999999999999988752 22346677888
Q ss_pred HHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHH
Q 001307 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1103)
Q Consensus 616 ~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l 695 (1103)
+++.++..+|..|..|+|.+.|.|...++.-.+ . ..-..|+..+
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e-----------------~-------------------qVc~~aVglV 663 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE-----------------Y-------------------QVCAAAVGLV 663 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH-----------------H-------------------HHHHHHHHHH
Confidence 999999999999999999999999999853111 0 1135678899
Q ss_pred HHHHHHhhhhccccHHHHHHHhccccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 001307 696 CCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (1103)
Q Consensus 696 ~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 774 (1103)
+.+++.++..|.||...++..++..+..+ .+.+|+-....+++++.-++. .....+++.+++.+..
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg-------------~~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG-------------ADFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888753 366778888888888876652 2356788888887665
Q ss_pred HH--ccCC----c----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhh
Q 001307 775 AL--HKEP----D----TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1103)
Q Consensus 775 ~~--~~~~----~----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~ 844 (1103)
+- ..++ . .+++..++++...++..++.......+...+..+.+.+.... .+++
T Consensus 731 as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~----------~e~~------- 793 (859)
T KOG1241|consen 731 ASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIA----------AEPD------- 793 (859)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHh----------cCcc-------
Confidence 54 2222 1 245667777777777777743233334444444554544421 1111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHH
Q 001307 845 LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD 880 (1103)
Q Consensus 845 ~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 880 (1103)
.++.+...++.++|-|+..+|+...+++.
T Consensus 794 -------~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 794 -------VSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 23457888999999999999987665553
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-47 Score=395.41 Aligned_cols=676 Identities=16% Similarity=0.222 Sum_probs=520.2
Q ss_pred hHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCC-------CC
Q 001307 21 SAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SF 91 (1103)
Q Consensus 21 ~~~l~~ll~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~-------~~ 91 (1103)
-.++..+.++ ++|||++.|..||.+|.++...|...|+..+.+.+.+ +.++..|..|++.||+.+..++ ..
T Consensus 3 ~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 3 KSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred hHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 3456666665 7899999999999999999987888899999999998 8889999999999999998764 34
Q ss_pred ccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCH-hHHHHHHHHHHHh
Q 001307 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQL 170 (1103)
Q Consensus 92 ~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~~l 170 (1103)
.|..++++.|+++|...++.|.+ +.+...+.+++.++.||++++|++.||+++..+.....+..+ ..+..++.+++.+
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ 161 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYH 161 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHH
Confidence 69999999999999999999998 799999999999999999999999999999999988776654 6778899999999
Q ss_pred hhhhhh-hchhhHHH-HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001307 171 SQYIGD-TLTPHLKH-LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1103)
Q Consensus 171 ~~~~~~-~l~~~~~~-l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~ 248 (1103)
|+...+ .+....+. ++.++...++..++..||.+|+++|..-..+...+...+ .-...++++.++..+.++.++.
T Consensus 162 ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E---~erNy~mqvvceatq~~d~e~q 238 (858)
T COG5215 162 CESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE---EERNYFMQVVCEATQGNDEELQ 238 (858)
T ss_pred hhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch---hhhchhheeeehhccCCcHHHH
Confidence 988554 44443444 444555666666789999999999998655554332222 2234789999999999999999
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHH-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh-------ccchhhhcch----
Q 001307 249 QEALELLIELAGTEPRFLRRQLVDV-VGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-------RAPGMMRKLP---- 316 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-------~~~~~~~~~~---- 316 (1103)
..++.||.++...+++++.+|+... ...+...+ ++.++++..+++++|.++|+.+- +.|..-....
T Consensus 239 ~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m--ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~ 316 (858)
T COG5215 239 HAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM--KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFAR 316 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHH
Confidence 9999999999999999999998754 44444545 45679999999999999998531 2221111111
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHH
Q 001307 317 QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHA 396 (1103)
Q Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 396 (1103)
..+..++|.++..+...+++ .++|+|++..+|..||..++...| +.+...++.++.+.+++++|..|++
T Consensus 317 aav~dvlP~lL~LL~~q~ed----------~~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 317 AAVADVLPELLSLLEKQGED----------YYGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCC----------ccccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhHHH
Confidence 23456899999988765432 234578888999999999999998 7777779999999999999999999
Q ss_pred HHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhccCCCC
Q 001307 397 ALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQN 474 (1103)
Q Consensus 397 al~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~ 474 (1103)
|.+++|++.++.-+ ...+++++.+|.+.....|+.-.|+..++||+|+++.+....+. ..|+...+..++.++.| +
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D--~ 463 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD--C 463 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc--c
Confidence 99999999988554 55688899999999999999999999999999999988765442 23677777888888887 7
Q ss_pred cchHHHHHHHHHHHHhcCCc------ccccCchHHHHHHHHHHhh-----------------------------------
Q 001307 475 PRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLLQ----------------------------------- 513 (1103)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~------~~l~~~l~~ll~~L~~~l~----------------------------------- 513 (1103)
|.+...++|...++++++.+ +.+.+++..++..|++.-+
T Consensus 464 p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~ 543 (858)
T COG5215 464 PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543 (858)
T ss_pred chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 78878888888888776543 3345566666655554321
Q ss_pred ----------------------------------------------------------------cC-ChhHHHHHHHHHH
Q 001307 514 ----------------------------------------------------------------NG-KQMVQEGALTALA 528 (1103)
Q Consensus 514 ----------------------------------------------------------------~~-~~~v~~~al~al~ 528 (1103)
+. ...+-..++.+|+
T Consensus 544 ~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 11 2335567888999
Q ss_pred HHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCc
Q 001307 529 SVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDP 608 (1103)
Q Consensus 529 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~ 608 (1103)
.+..+.++.|..|.+.++|+|...++. .++.+...|+..+|.++.++| ..|.+|++.+|..+.+..++. ..++.
T Consensus 624 al~~sl~e~Fe~y~~~fiPyl~~aln~----~d~~v~~~avglvgdlantl~-~df~~y~d~~ms~LvQ~lss~-~~~R~ 697 (858)
T COG5215 624 ALSTSLEERFEQYASKFIPYLTRALNC----TDRFVLNSAVGLVGDLANTLG-TDFNIYADVLMSSLVQCLSSE-ATHRD 697 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCh-hhccc
Confidence 999999999999999999999999832 234566778889999999999 789999999999999855533 24567
Q ss_pred hhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHH
Q 001307 609 TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEK 688 (1103)
Q Consensus 609 ~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k 688 (1103)
+++.++++|+.|+..+|.+|.+||..||-.+.+.-+.+|.-. +-+-.++. .....--
T Consensus 698 lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~-------------~~~~~dy~----------~~~~~~v 754 (858)
T COG5215 698 LKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD-------------EVYVDDYR----------KNAVQLV 754 (858)
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC-------------ceeHHHHH----------HHHHHHH
Confidence 899999999999999999999999999988877766654210 00001110 0011111
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHhccccccc-CCHHHHHHHHHhHHHHHHHH
Q 001307 689 ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSA 744 (1103)
Q Consensus 689 ~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~ 744 (1103)
..|.-.++.-.++-.+.+.||+..++..+-..-.++ .++..-++|..++++|....
T Consensus 755 ~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mf 811 (858)
T COG5215 755 NCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMF 811 (858)
T ss_pred HHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhC
Confidence 112222222233335678999998888776554443 24566678888999988764
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-34 Score=329.53 Aligned_cols=822 Identities=17% Similarity=0.227 Sum_probs=556.3
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhhchh-hHH
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTP-HLK 183 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~l~~-~~~ 183 (1103)
.+|++.|.+ ++..+|+.+-.++..+.+. +.+++.|...++. +++..|+.|...++.++...-..+.. ...
T Consensus 7 ~qLl~~l~s-pDn~vr~~Ae~~l~~~~~~-------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 7 EQLLQQLLS-PDNEVRRQAEEALETLAKT-------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHhhcc-------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 356777776 6888999999998877552 2288999888765 58899999999999988765444432 455
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1103)
++...++.++...+.+.||....+.+..++...- ..-||.+++.++++.+++++..|..++.+|..+.+..+
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l--------~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~ 150 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL--------PEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG 150 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc
Confidence 6777777777776689999999999999987641 22689999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001307 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1103)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~ 343 (1103)
..+.+|++.+.+.+.+.+.++ +..+|..|+..+..++..-+..+... +....++|.++..+.+..+++
T Consensus 151 ~~~~~~~~~l~~lf~q~~~d~--s~~vr~~a~rA~~a~~~~~~~~~~~~----~~~~~llP~~l~vl~~~i~~~------ 218 (1075)
T KOG2171|consen 151 NTLQPHLDDLLRLFSQTMTDP--SSPVRVAAVRALGAFAEYLENNKSEV----DKFRDLLPSLLNVLQEVIQDG------ 218 (1075)
T ss_pred cccchhHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHhccchHHH----HHHHHHhHHHHHHhHhhhhcc------
Confidence 999999999999999988654 34499999999999988522112222 344455565555554332110
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCCCcchHH---HHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHHHHH---Hh
Q 001307 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV---ASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV---KN 415 (1103)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~---~~ 415 (1103)
+.....-+.+++..++...| +-+-|. ++++..+...+. +...|+.|+..+.+++++.+...+ ++
T Consensus 219 -------d~~~a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~ 290 (1075)
T KOG2171|consen 219 -------DDDAAKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALL 290 (1075)
T ss_pred -------chHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhh
Confidence 01112233445555555544 333333 333333333443 467888888888877776432111 11
Q ss_pred -------------------------------------------------------HHHHHHHHHhcCCCCChhHHHHHHH
Q 001307 416 -------------------------------------------------------LEQVLSMVLNSFRDPHPRVRWAAIN 440 (1103)
Q Consensus 416 -------------------------------------------------------l~~i~~~l~~~l~d~~~~vr~~a~~ 440 (1103)
++.+++.+...+.++++.-|.+++.
T Consensus 291 ~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~ 370 (1075)
T KOG2171|consen 291 GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALL 370 (1075)
T ss_pred hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2445566667778888999999999
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC-ChhH
Q 001307 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMV 519 (1103)
Q Consensus 441 ~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~-~~~v 519 (1103)
+|+.+++.+++.+ ...++.+++.+++.++| ++|+||.+||.+++.+...+.+..-..|-+.+.+.|...+++. ++.|
T Consensus 371 Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 371 ALSVIAEGCSDVM-IGNLPKILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHHHcccHHHH-HHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence 9999999999888 67999999999999999 9999999999999999999988743344555566777777765 4678
Q ss_pred HHHHHHHHHHHHH-hhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHH
Q 001307 520 QEGALTALASVAD-SSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL 598 (1103)
Q Consensus 520 ~~~al~al~~l~~-~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l 598 (1103)
+..|..++-.+.. +.++.+.||++.+|..+...+.. +....+|..+..+|+.+|.+.+ +.|.||.+.+|+.+.+.
T Consensus 449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~---~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ---SSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNF 524 (1075)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHH
Confidence 7777777666654 55667899999999966666544 2456689999999999999999 88999999999999995
Q ss_pred hcCCC-CCCCchhhHHHHHHHHHHhHhc-CCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCc
Q 001307 599 QGSQM-ETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1103)
Q Consensus 599 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 676 (1103)
..+.. ++..++|.-++.|++-++..+| +.|.|+...++..+......+. ++++-.
T Consensus 525 L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~----------------~~dd~~------- 581 (1075)
T KOG2171|consen 525 LQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ----------------DDDDPL------- 581 (1075)
T ss_pred HhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch----------------hhcccc-------
Confidence 44332 3344588889999999999999 6699999999999887752110 111110
Q ss_pred eeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccc--------c---------CCH-----------H
Q 001307 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF--------Y---------FHE-----------E 728 (1103)
Q Consensus 677 ~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~--------~---------~~~-----------~ 728 (1103)
+......++.+++.+|++|.||++.+++.+++-.+- . ..+ .
T Consensus 582 -----------~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~ 650 (1075)
T KOG2171|consen 582 -----------RSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIG 650 (1075)
T ss_pred -----------HHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeee
Confidence 223456889999999999999999999887642210 0 000 1
Q ss_pred HH-------HHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001307 729 VR-------KAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1103)
Q Consensus 729 vr-------~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1103)
|| ..|+..++......+.. -.+++.+.+...+|.+...+. ..|+.++++++-.+++..-.
T Consensus 651 I~Tsvl~eK~~A~~~Lv~~a~~lk~~---------F~pYve~v~~l~v~~l~f~fh----dgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 651 IRTSVLDEKETACEALGEYAKELKEA---------FAPYVEQVVELMVPLLKFYFH----DGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred eeehhHHHHHHHHHHHHHHHHhhhhh---------hhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHH
Confidence 22 23333333333222111 123445555444444433332 34777777765554443211
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhch--hh
Q 001307 802 --LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF--LP 877 (1103)
Q Consensus 802 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~--~~ 877 (1103)
...+.++..+...+.+.+.+... .|.+.++...+.+.++..++.+|... .+
T Consensus 718 A~~~~p~~l~~l~~~~~~~l~~~l~-------------------------~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~ 772 (1075)
T KOG2171|consen 718 ACQGGPEYLKQLWEAIRPALIKALE-------------------------EEPETEVLSEILESFAECIEVMGDNCLNED 772 (1075)
T ss_pred HhccChHHHHHHHHHHHHHHHHHhh-------------------------cCCcHHHHHHHHHHHHHHHHhcCcccCCcH
Confidence 12345666665555555444221 11334567777888888888888542 24
Q ss_pred hHHHHHHhhhhhcc----C-----------CCCH-----------HHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-
Q 001307 878 FFDELSSYLTPMWG----K-----------DKTA-----------EERRIAICIFDDVAEQCREAALKYYETYLPFLLE- 930 (1103)
Q Consensus 878 ~~~~l~~~l~~~l~----~-----------~~~~-----------~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~- 930 (1103)
++..+...+...+. . +.+. ..-..+..++..+++..+....+++..++|.++.
T Consensus 773 ~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~ 852 (1075)
T KOG2171|consen 773 GLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKL 852 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 44443332222111 0 0011 1112245566677777777777888888888876
Q ss_pred -------H---HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC-C-Hhh
Q 001307 931 -------A---AVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-D-AAQ 998 (1103)
Q Consensus 931 -------~---a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~ 998 (1103)
. |.-.++.+++.++.+..+|....++.+...+.++ +.++|.||+.-+|-+..+.+... + ...
T Consensus 853 l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~------~pEVRqaAsYGiGvlaq~~g~~y~~v~~~ 926 (1075)
T KOG2171|consen 853 LKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS------DPEVRQAAAYGMGVLAQFGGEDYAPVCSE 926 (1075)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 2 2333556777888888899999999999999876 79999999999999999988763 2 245
Q ss_pred HHHHHHhcC--CCCCcHHHH----HHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc
Q 001307 999 VVPAWLNCL--PIKGDLIEA----KIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1054 (1103)
Q Consensus 999 ~l~~~l~~l--p~~~D~~e~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 1054 (1103)
.+|.+...+ |+-. .+|+ .++..++++++..++..+ + +++++..+.+.|.
T Consensus 927 ~l~~L~~~iq~~~ar-~Ee~~~ateNa~gaiaki~~~~~~~i-~-----vdqvl~~~l~~LP 981 (1075)
T KOG2171|consen 927 ALPLLVQVLQPPLAR-TEENRRATENAIGAIAKILLFNPNRI-P-----VDQVLPAWLSWLP 981 (1075)
T ss_pred HHHHHHHHHcChhhh-hHHHhHHHHHHHHHHHHHHHhCCccC-c-----HHHHHHHHHHhCC
Confidence 566665543 2211 3444 456677888887665433 2 6666666666664
No 6
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=312.73 Aligned_cols=868 Identities=16% Similarity=0.218 Sum_probs=530.2
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCc-----
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFL----- 92 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~----- 92 (1103)
||++.+.+++.+...+|++.|+.||++|+++.+ .|+ |++.+++++.+ +.+-.+||.|++.|||+|.+.|...
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~ 78 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGR 78 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 789999999999999999999999999999999 675 68999999987 5667889999999999999983222
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 001307 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (1103)
-..+.++.|..+|..++..+.. .+..+|.+...++-.|.+.++| +.||.+++.+...+++++...--+|+.++..+++
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 1126789999999999999998 5888999999999999999999 8999999999999999998888899999999987
Q ss_pred hhh-----------hhchhhHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHHHh-cCC-cchHhHHHhhHHHHHHHHH
Q 001307 173 YIG-----------DTLTPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQC-LTS-SADRDRFQDLLPLMMRTLT 237 (1103)
Q Consensus 173 ~~~-----------~~l~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~-~~~-~~~~~~~~~~ip~ll~~l~ 237 (1103)
... ..+...++.+++.+.+.+.++ .+..+....++.+.+++.+ ++. -...+.|..++..++.++.
T Consensus 157 ~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 157 TYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILN 236 (1010)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHc
Confidence 532 223345666777777777765 2344555666766666654 211 1133445666666666554
Q ss_pred HHHh----CCCHHHH---------HHHHHHHHHHHccchH--------------HHHHhHHHHHHHHHHhhcC----CCc
Q 001307 238 ESLN----NGNEATA---------QEALELLIELAGTEPR--------------FLRRQLVDVVGSMLQIAEA----ESL 286 (1103)
Q Consensus 238 ~~l~----~~~~~~~---------~~~~~~l~~l~~~~~~--------------~~~~~~~~l~~~l~~~~~~----~~~ 286 (1103)
+.+. +.++++| +-|+..+..+.+.+++ ++..+...+.+.+++++.. .-.
T Consensus 237 rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yl 316 (1010)
T KOG1991|consen 237 RPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYL 316 (1010)
T ss_pred CCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3222 1234433 4577777777765531 1234455666666665421 123
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhcCCCC-CcccccCCCC------CccccCCCchhhH
Q 001307 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIED-DPLWHSAETE------DEDAGESSNYSVG 358 (1103)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~-~~~w~~~~~e------~ed~~~~~~~~~a 358 (1103)
.+.+-..++.++..++.. ..+++.+.|+++.++. .+++.|+..++ .+.|..++.| |--++..++..+|
T Consensus 317 s~rvl~~~l~fl~~~Vs~----~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa 392 (1010)
T KOG1991|consen 317 SDRVLYYLLNFLEQCVSH----ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAA 392 (1010)
T ss_pred CHHHHHHHHHHHHHhccH----HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHH
Confidence 456666777777776663 2345666777777654 56677776553 3457654432 1012345666778
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhc--------CCChHHHHHHHHHHHHHHhhcHH--HHHHhHHH-HHHHHHhcC
Q 001307 359 QECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCAK--VMVKNLEQ-VLSMVLNSF 427 (1103)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~-i~~~l~~~l 427 (1103)
..++..++..-| +..+|.+++++.+.+. ..+.+.+++|++.+|++++...+ .++..+.. +++.+.+.+
T Consensus 393 ~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f 471 (1010)
T KOG1991|consen 393 LDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF 471 (1010)
T ss_pred HHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh
Confidence 888888888877 7888888888887765 24689999999999999965443 34455554 557888999
Q ss_pred CCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc--cccCchHHH
Q 001307 428 RDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--ILTPYLDGI 504 (1103)
Q Consensus 428 ~d~~~~vr~~a~~~L~~l~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~--~l~~~l~~l 504 (1103)
+++-...|..|||.+++++ ..++. ...+..++....+++.+.+.-.||..|+.||..|+.+.... .+.++++++
T Consensus 472 ~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 472 QSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 9999999999999999999 55554 34577888888888883266779999999999998876532 255666666
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhh
Q 001307 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKF 584 (1103)
Q Consensus 505 l~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~ 584 (1103)
|+.|+++.+.-.... + -.++..+....+ +.+
T Consensus 549 mq~lL~L~ne~End~--------------------------------------------L----t~vme~iV~~fs-eEl 579 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDD--------------------------------------------L----TNVMEKIVCKFS-EEL 579 (1010)
T ss_pred HHHHHHHHHhcchhH--------------------------------------------H----HHHHHHHHHHHH-Hhh
Confidence 666665443211100 0 112223333334 556
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCC
Q 001307 585 RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 664 (1103)
Q Consensus 585 ~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~ 664 (1103)
.||+.++++-+.+ .|.++ ++. +++++ +
T Consensus 580 sPfA~eL~q~La~------------------~F~k~----------------------l~~-------~~~~~------~ 606 (1010)
T KOG1991|consen 580 SPFAVELCQNLAE------------------TFLKV----------------------LQT-------SEDED------E 606 (1010)
T ss_pred chhHHHHHHHHHH------------------HHHHH----------------------Hhc-------cCCCC------c
Confidence 6766666654432 11111 100 00000 0
Q ss_pred CcccchhhcCCceeeeechhHHHHHH-H---HHHHHHHHHHhhhh--ccccHHHHHHHhcccccccCCHHHHHHHHHhHH
Q 001307 665 DDSMETITLGDKRIGIKTSVLEEKAT-A---CNMLCCYADELKEG--FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP 738 (1103)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~-A---~~~l~~l~~~~~~~--~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~ 738 (1103)
.++ +|.. | ++++.++...+.+. +..+++. .+.+.+.+....++.. ...-+.
T Consensus 607 ~~d-------------------dk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~---~~l~vi~~iL~~~i~d-fyeE~~ 663 (1010)
T KOG1991|consen 607 SDD-------------------DKAIAASGILRTISTILLSLENHPEVLKQLEP---IVLPVIGFILKNDITD-FYEELL 663 (1010)
T ss_pred cch-------------------HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH---HHHHHHHHHHHHhhHH-HHHHHH
Confidence 100 1211 1 23344444333221 1111111 1111111111111111 111122
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Q 001307 739 ELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL--LDEGQVRSIVDEIK 816 (1103)
Q Consensus 739 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~~~~~~l~ 816 (1103)
.++..+.... ...++..++++..++ ++++++ ..+...++.-.+.+.+...++. -.+.+...+++.+.
T Consensus 664 ei~~~~t~~~------~~Isp~mW~ll~li~----e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~ 732 (1010)
T KOG1991|consen 664 EIVSSLTFLS------KEISPIMWGLLELIL----EVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIK 732 (1010)
T ss_pred HHHhhhhhhh------cccCHHHHHHHHHHH----HHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHH
Confidence 2333222111 113345666665554 444443 4667778888888777665543 24566677777777
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccC-CCC
Q 001307 817 QVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK-DKT 895 (1103)
Q Consensus 817 ~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~ 895 (1103)
.++.+ ++.+++| ++.+++++..++..+++....+++.++...+..+.. ..+
T Consensus 733 ~~l~~--------------e~~~D~d--------------~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~ 784 (1010)
T KOG1991|consen 733 KVLTS--------------ENGEDSD--------------CESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVET 784 (1010)
T ss_pred HHHcC--------------CCCchHH--------------HHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccc
Confidence 77654 2222221 667999999999999987777777777777776543 345
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHhhcCCCCCChhhhh
Q 001307 896 AEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGG-SVVKPLVGEALSRLNVVIRHPNALQPENLM 974 (1103)
Q Consensus 896 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~ 974 (1103)
...|.+++.+....+-+ |.--+||.|-..+- ..|.+.+.+.++...+..
T Consensus 785 s~~~~~~leVvinalyy------------------nP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~H------------ 834 (1010)
T KOG1991|consen 785 SELRVMLLEVVINALYY------------------NPKLTLGILENQGFLNNFFTLWFQFINQFKKVH------------ 834 (1010)
T ss_pred hHHHHHHHHHHHHHHHc------------------CcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh------------
Confidence 56677777777666666 34446677655442 233443333333333322
Q ss_pred HHHHHHHHHHHHHhhcCC-CCC---HhhHHHHHHh---cCCCCCcHHHHHHHHHHHHHHHhhcCCccc-C----------
Q 001307 975 AYDNAVSALGKICQFHRD-SID---AAQVVPAWLN---CLPIKGDLIEAKIVHEQLCSMVERSDSDLL-G---------- 1036 (1103)
Q Consensus 975 ~~~na~~al~~l~~~~~~-~~~---~~~~l~~~l~---~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~-~---------- 1036 (1103)
-|.-++-+++.++...+. +++ +.++.|.++. .||- ++..-...=+.....-. +
T Consensus 835 DkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~---------ala~ra~~~ee~~~e~~~~~~~~~e~~~~ 905 (1010)
T KOG1991|consen 835 DKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLLSLPE---------ALAERAQVEEEDSEEGEEEDDDEEEDFID 905 (1010)
T ss_pred hHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhccccccccCCCCcchhhccC
Confidence 122366666666665322 221 1233333332 2221 12111111111000000 0
Q ss_pred -------cCcCchhHHHHH--------------------H-HHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHh
Q 001307 1037 -------PNHQYLPKIVSV--------------------F-AEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWS 1088 (1103)
Q Consensus 1037 -------~~~~~~~~i~~~--------------------~-~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 1088 (1103)
++..+..+.... + ...+-++..++.+.+.-++++++.++...+.- +|.+++
T Consensus 906 d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~-yq~l~~ 984 (1010)
T KOG1991|consen 906 DEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVR-YQKLIS 984 (1010)
T ss_pred ccccccccchhHHHhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHHHhhhccChHH-HHHHHh
Confidence 000000000000 0 00011234556789999999999999998877 999999
Q ss_pred cCCHHHHHHHHhhh
Q 001307 1089 SLQPQQQLALQSIL 1102 (1103)
Q Consensus 1089 ~l~~~~~~~l~~~~ 1102 (1103)
.|++++|+.||.++
T Consensus 985 ~L~~~q~~~lq~I~ 998 (1010)
T KOG1991|consen 985 TLTPEQQDSLQTIL 998 (1010)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999886
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.2e-27 Score=262.55 Aligned_cols=852 Identities=14% Similarity=0.195 Sum_probs=565.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-Hhhhc----Cc---hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 26 TLISHLMSTSNEQRSEAELLFN-LCKQQ----DP---DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 26 ~ll~~~~s~d~~~r~~Ae~~L~-~~~~~----~p---~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
++++.+.|+|.+.|-.|+.-|- ++++. +- ...+..+++.|. +.+.+++++|.-++.-++++ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsK--------vk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSK--------VK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhh--------ch
Confidence 8999999999999999998764 45441 11 124677777775 67899999999999987754 55
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-------CCcchhHHHHHHhhcC--CCHhHHHHHHHHHH
Q 001307 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSS--DSVKLQESAFLIFA 168 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~-------~~w~~ll~~l~~~~~s--~~~~~r~~al~~l~ 168 (1103)
++..+.+...|...+.+ .....|...+-.+-......-|. .-.+.++|.+.+.+.. +....+.-++.+++
T Consensus 80 e~~le~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred HHHHHHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 77778888888888776 34555555444444444433331 1335566666666543 33457778888888
Q ss_pred HhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001307 169 QLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1103)
Q Consensus 169 ~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~ 248 (1103)
.+...++..+.+....++..+...+..+ ...||+-|+.+++.+.... ....|..++..+++-+.. .......
T Consensus 159 d~lsr~g~ll~~fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~~---~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLSN---RTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcchHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCC---CCchHHH
Confidence 8888888877766677788888888886 8899999999999999876 345566666655554432 3455566
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001307 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1103)
...+.++..++...+..+..|++.+++++.+.+.. ...+++.|+.+++.+..+.. +.| +...++.+.++..++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp---~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCP---KEILPHVPEIINLCL 304 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hCh---hhhcccchHHHHHHH
Confidence 67899999999999999999999999998887622 23578999999999999998 677 456688999999999
Q ss_pred HhhcCCC-------CCcc--cccCCCCCc-----cccCC---CchhhHHHHHHHHHHHcCCCcchHHHHHHH----HHhh
Q 001307 328 SMLLDIE-------DDPL--WHSAETEDE-----DAGES---SNYSVGQECLDRLAIALGGNTIVPVASEQL----PAYL 386 (1103)
Q Consensus 328 ~~l~~~~-------~~~~--w~~~~~e~e-----d~~~~---~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l----~~~l 386 (1103)
.++.+.- +|++ ...+.+|+| .||++ ..+++|.+|+..+...- .+++|.+.+.+ ...+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR--~E~L~~~~q~l~p~lI~Rf 382 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR--LEMLPDFYQTLGPALISRF 382 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc--HHHHHHHHHHhCHHHHHHH
Confidence 9987531 1111 101111111 12233 33457888887766432 23333332222 2222
Q ss_pred cCCChHHHHHHHHHHHHHH------------------hhcH---HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHh
Q 001307 387 AAPEWQKHHAALIALAQIA------------------EGCA---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1103)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~------------------~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l 445 (1103)
+..+-.+|.-.+.++-.+. .+.+ ..+....+.++..+-+.+++.+-.-|..++..|..+
T Consensus 383 kEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~el 462 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTEL 462 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 2222233322222222211 1222 244566677888888888887777888999999999
Q ss_pred hhhhchhHHhhhhhhhHHHHHhhccCCC-CcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHH
Q 001307 446 STDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1103)
Q Consensus 446 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al 524 (1103)
....++.. .++.+.++|.+...++|.+ ....+..+..++.......+++.+.||++.+.+.+.....++-+++-..|+
T Consensus 463 i~~lp~~l-~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL 541 (1233)
T KOG1824|consen 463 INVLPGAL-AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEAL 541 (1233)
T ss_pred HHhCcchh-hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHH
Confidence 98887766 7899999999999999832 234567788888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh-------hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH
Q 001307 525 TALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1103)
Q Consensus 525 ~al~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 597 (1103)
.....+++...+ ++.||+.++.....+.+... +.+..+|.+|+.|+|.+...+| +....+++.+++.+.+
T Consensus 542 ~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~--d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 542 LVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKAT--DSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHH
Confidence 999998887643 45689999988888887753 3467899999999999999999 8888999999999987
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhH-hcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCc
Q 001307 598 LQGSQMETDDPTTSYMLQAWARLCKC-LGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1103)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 676 (1103)
-..+ +..|..+++|+..++.. +.-+..|.+..+++.+...+....
T Consensus 619 Rl~n-----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~----------------------------- 664 (1233)
T KOG1824|consen 619 RLGN-----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ----------------------------- 664 (1233)
T ss_pred HHhc-----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH-----------------------------
Confidence 4432 34567778888877755 344567888888888877663210
Q ss_pred eeeeechhHHHHHHHHHHHHHHHHHhhhhccccH-HHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCC
Q 001307 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPG 755 (1103)
Q Consensus 677 ~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~ 755 (1103)
-.-|...+.++..++.+.+..+.++. +.++..+.+++... +-.+-+.|..++..+...
T Consensus 665 --------r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises-dlhvt~~a~~~L~tl~~~------------ 723 (1233)
T KOG1824|consen 665 --------RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES-DLHVTQLAVAFLTTLAII------------ 723 (1233)
T ss_pred --------HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhc------------
Confidence 01133456677888888888888774 66777888887643 445666666666665542
Q ss_pred CCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 001307 756 RNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKA 835 (1103)
Q Consensus 756 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 835 (1103)
-|..+....+.+++.++..+++. -+...++.++-......-..-. +.++ +..+...+....+... .
T Consensus 724 -~ps~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f~alV~t~~-~~l~--y~~l~s~lt~PV~~~~-------~ 789 (1233)
T KOG1824|consen 724 -QPSSLLKISNPILDEIIRLLRSP---LLQGGALSALLLFFQALVITKE-PDLD--YISLLSLLTAPVYEQV-------T 789 (1233)
T ss_pred -ccHHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHHHHHHhcCC-CCcc--HHHHHHHHcCCccccc-------c
Confidence 12233344455566555555432 1222233333222222111000 1111 1112222222111000 0
Q ss_pred CCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhh
Q 001307 836 EDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCRE 915 (1103)
Q Consensus 836 e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~ 915 (1103)
| -.........+.|...+...+++...+...++...+.. +..+.+.|.+|+-.+|++-+.-+.
T Consensus 790 ---~-----------~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s---~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 790 ---D-----------GLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS---PKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred ---c-----------chhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC---CCCchhHHHHHHhhhhhhccCCCC
Confidence 0 13445678889999999998886555555554444433 456778899999999999887665
Q ss_pred hhhh-hHHhHHHHHHH-------HHHHHHHHHHhhcCCCchHHHHH-----------HHHHHHHhhcCCCCCC-------
Q 001307 916 AALK-YYETYLPFLLE-------AAVYGLGVCAEFGGSVVKPLVGE-----------ALSRLNVVIRHPNALQ------- 969 (1103)
Q Consensus 916 ~~~~-~~~~~l~~l~~-------~a~~~lg~l~~~~~~~~~~~~~~-----------~l~~L~~~l~~~~~~~------- 969 (1103)
...+ |...++..+-. +|+||+|.++...-+.+.|++-+ +++.|..++.....+.
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~ 932 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEK 932 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 4433 44455554432 89999999987555555555321 4666766665432110
Q ss_pred ----------hhhhhHHHHHHHHHHHHHhhcCCC
Q 001307 970 ----------PENLMAYDNAVSALGKICQFHRDS 993 (1103)
Q Consensus 970 ----------~~~~~~~~na~~al~~l~~~~~~~ 993 (1103)
......|.-.+.|||+++...|+.
T Consensus 933 IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes 966 (1233)
T KOG1824|consen 933 IWALLFKHCECAEEGTRNVVAECLGKLVLIEPES 966 (1233)
T ss_pred HHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH
Confidence 123455777789999999987764
No 8
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-25 Score=244.58 Aligned_cols=603 Identities=17% Similarity=0.231 Sum_probs=401.9
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCc---cc
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFL---WP 94 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~---w~ 94 (1103)
.+.+.+.+.|.+..+||+++|+.||+.|+++.. ++ +|...+++++.+ ..++.+|..|++.+|+.++++|... -.
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~-~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQ-NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CC-CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 466788999999999999999999999999988 44 467888898887 4489999999999999999983111 12
Q ss_pred cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q 001307 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1103)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~ 174 (1103)
.+.++.++.+|..++..+.+ ....++.++.++++.|+++++| +.||.|+|.+..-+++.|-++-.+.+..-..+.+..
T Consensus 80 ~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred ccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 47788999999999999997 6789999999999999999999 899999999999999988777666666666666543
Q ss_pred hhhc---------hhhHH----HHHHHHHHhhC----CCCChH---HHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHH
Q 001307 175 GDTL---------TPHLK----HLHAVFLNCLT----NSNNPD---VKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1103)
Q Consensus 175 ~~~l---------~~~~~----~l~~~l~~~l~----~~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~ 234 (1103)
...+ +..+. .+..+|.+... .+.+.. +-...+..++.+...+...+.++-|.+.+...|.
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 3221 11122 22222222221 111211 1122233333344334334455666666666776
Q ss_pred HHHHHHhCCC-------------HHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcc---hHHHHHHHHHH
Q 001307 235 TLTESLNNGN-------------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLE---EGTRHLAIEFV 298 (1103)
Q Consensus 235 ~l~~~l~~~~-------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~r~~a~~~l 298 (1103)
.+...+..++ ...+...|+.+.-.+..|.+.|.+++++++...|.++.....+ +.....|++++
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 6666665221 1345577888888888899999999999998888887443322 34567889999
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhc------CCCCCcccccCCC-----CCccccCCCchhhHHHHHHHHHH
Q 001307 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLL------DIEDDPLWHSAET-----EDEDAGESSNYSVGQECLDRLAI 367 (1103)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~~~w~~~~~-----e~ed~~~~~~~~~a~~~l~~l~~ 367 (1103)
..+++...+ ++... . ++++..+.+... ..+|++-+..+.. |-|..|-++.+++|.+.++.|+.
T Consensus 318 t~V~~r~~y-~~~F~-~----~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~ 391 (960)
T KOG1992|consen 318 TSVSRRPHY-AELFE-G----ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCK 391 (960)
T ss_pred HHHHhhhhh-Hhhhc-c----hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHH
Confidence 999884211 11111 1 223333332221 1111111100000 01112234557788999999999
Q ss_pred HcCCCcchHHHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhcHH---------H---HHHhH-HHHHHHHHhcCC
Q 001307 368 ALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK---------V---MVKNL-EQVLSMVLNSFR 428 (1103)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~---------~---~~~~l-~~i~~~l~~~l~ 428 (1103)
.+. ..+.+.+...+...+. +.+|+.++.++..+.+++..... . +..++ ..+.|.+...=.
T Consensus 392 ~fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v 470 (960)
T KOG1992|consen 392 NFE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV 470 (960)
T ss_pred Hhc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence 885 5677776666666665 66899999999988888653211 1 11111 233344333333
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC--------CcccccCc
Q 001307 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC--------TPEILTPY 500 (1103)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~--------~~~~l~~~ 500 (1103)
.++|.++..+..-+-.+=..++ ..++-.++|.+.+.+.. +...|...|+.++..+.... +++.+.||
T Consensus 471 n~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~ 545 (960)
T KOG1992|consen 471 NEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPF 545 (960)
T ss_pred ccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchH
Confidence 5678889888776554444443 46788999999999998 78889999999999876433 34567899
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh-cCCcccchhhhHHHHHHHHHHHhh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMECISLVGMAV 579 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~lr~~a~~~l~~i~~~~ 579 (1103)
...++..|++.++.+...--+....+|-.+.....+...|+.+.+++.|.+++.. ..++.....-...+|+++.+.+..
T Consensus 546 ~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t 625 (960)
T KOG1992|consen 546 VEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT 625 (960)
T ss_pred HHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999888776666677888888888888888889999988888887654 233334444555789999888766
Q ss_pred Chhh---hhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHH
Q 001307 580 GKDK---FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (1103)
Q Consensus 580 ~~~~---~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll 640 (1103)
++.. ...+-..+++.+..+..+.+ .+..+|+++.++-+....+..+.+....++|.++
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 5332 34455555655544333211 2356788888888888877655444444555544
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.3e-27 Score=251.69 Aligned_cols=660 Identities=18% Similarity=0.265 Sum_probs=435.8
Q ss_pred HHHHHHhCCChHHHHHHHHHhcCCC---hHHHHHHHHHHHH-hhhcCchHHHHHHHHHH---------------cc--CC
Q 001307 11 SQLAVILGPDSAPFETLISHLMSTS---NEQRSEAELLFNL-CKQQDPDSLTLKLAHLL---------------QR--SP 69 (1103)
Q Consensus 11 ~~~~~~~~~d~~~l~~ll~~~~s~d---~~~r~~Ae~~L~~-~~~~~p~~~~~~L~~il---------------~~--~~ 69 (1103)
.++.+.-.-|..+|..+|...+..+ ...|..|--+|+. +..++|+.-..+.-.++ ++ ++
T Consensus 23 ~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ 102 (859)
T KOG1241|consen 23 KQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSP 102 (859)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 3444444467777777777665443 2457777777764 43334432111111111 11 34
Q ss_pred ChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC---CCcchhHH
Q 001307 70 HPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLP 146 (1103)
Q Consensus 70 ~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~---~~w~~ll~ 146 (1103)
.|..+..|+.++-...... +|...-..+...+.....++....+|+...++||.+....-|+ ...++++-
T Consensus 103 ep~~~s~Aaq~va~IA~~E-------lP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLt 175 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIE-------LPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILT 175 (859)
T ss_pred CCCccchHHHHHHHHHHhh-------CchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHH
Confidence 4555555555554443321 3333333444555666666655579999999999998865553 24566677
Q ss_pred HHHHhhcC--CCHhHHHHHHHHHHHhhhhhhhhchh--hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001307 147 FMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1103)
Q Consensus 147 ~l~~~~~s--~~~~~r~~al~~l~~l~~~~~~~l~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1103)
.+++.... ++..+|-+|+.+|..-.+..+..|.. ..+-+++......+.+ +.++|.+|+.||.+++..+
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~Ly------ 248 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLY------ 248 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHH------
Confidence 77777654 46689999999999888877655543 2344666777777886 9999999999999998753
Q ss_pred hHHHhhHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHccch-------------------HHHHHhHHHHHHHHHH
Q 001307 223 DRFQDLLPLM----MRTLTESLNNGNEATAQEALELLIELAGTEP-------------------RFLRRQLVDVVGSMLQ 279 (1103)
Q Consensus 223 ~~~~~~ip~l----l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-------------------~~~~~~~~~l~~~l~~ 279 (1103)
|.-.-|++ +........++++++...+++.|..+++..- .+.+..+..++|.+++
T Consensus 249 --Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 249 --YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 22222333 3333445568899999999999997775321 1123345578888888
Q ss_pred hhcCCCc-----chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCc
Q 001307 280 IAEAESL-----EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1103)
Q Consensus 280 ~~~~~~~-----~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~ 354 (1103)
.+...+. +......|-.+|.-+++.. + ..+++.++|.+-+.+ ..++|..
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-------~--D~Iv~~Vl~Fiee~i----~~pdwr~------------- 380 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-------G--DDIVPHVLPFIEENI----QNPDWRN------------- 380 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHHh-------c--ccchhhhHHHHHHhc----CCcchhh-------------
Confidence 7744221 1234555555555555421 1 123344444443333 3344543
Q ss_pred hhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHH--HhHHHHHHHHHhcCCC
Q 001307 355 YSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV--KNLEQVLSMVLNSFRD 429 (1103)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~d 429 (1103)
+.+|.-+++.+...-.++ .+.+..+|.+...+.++.-.+|.++.+.+|.+++.+++.+. .++..+++.+..+++|
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D 460 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND 460 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh
Confidence 345666665554332222 34455667777777787777779999999999999987443 5677888999988876
Q ss_pred CChhHHHHHHHHHHHhhhhhchhH--------HhhhhhhhHHHHHhhccC--CCCcchHHHHHHHHHHHHhcCCcc----
Q 001307 430 PHPRVRWAAINAIGQLSTDLGPDL--------QNQFHPQVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCTPE---- 495 (1103)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~--------~~~~~~~il~~l~~~l~~--~~~~~v~~~a~~al~~l~~~~~~~---- 495 (1103)
+|+|-..+||++..+++.+.... ..++++.++..|++.-+- ......|.+|..+|..++..++..
T Consensus 461 -ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 461 -EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred -CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 58899999999999998764321 134666777777665332 123467888888888877665421
Q ss_pred -------------------------------------------------cccCchHHHHHHHHHHhhc-CChhHHHHHHH
Q 001307 496 -------------------------------------------------ILTPYLDGIVSKLLVLLQN-GKQMVQEGALT 525 (1103)
Q Consensus 496 -------------------------------------------------~l~~~l~~ll~~L~~~l~~-~~~~v~~~al~ 525 (1103)
.+.++.+.+|..+++.+++ .+..+.+.|+.
T Consensus 540 v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~l 619 (859)
T KOG1241|consen 540 VQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 1233445556666666666 34568899999
Q ss_pred HHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCC
Q 001307 526 ALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMET 605 (1103)
Q Consensus 526 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~ 605 (1103)
++++++...|..|.+|++.+.|+|...+++.. ...+...|+...|.++++++ +.|.||++.+|..+++..++. ..
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~---e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~-~~ 694 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ---EYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSP-NL 694 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCc-cc
Confidence 99999999999999999999999999997643 34567778888999999999 889999999999999854432 24
Q ss_pred CCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhH
Q 001307 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVL 685 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1103)
++.++..++++|+.|+...|.+|.||+..+++.+.+..+..++- .+++..+|++
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~-------------~~~~~~dYvd------------- 748 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDP-------------ADDSMVDYVD------------- 748 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCC-------------CcccHHHHHH-------------
Confidence 56789999999999999999999999999999998776332210 0233344432
Q ss_pred HHHHHHHHHHHHHHHHhh-----hhccccHHHHHHHhccccccc-CCHHHHHHHHHhHHHHHHHH
Q 001307 686 EEKATACNMLCCYADELK-----EGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSA 744 (1103)
Q Consensus 686 ~~k~~A~~~l~~l~~~~~-----~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~ 744 (1103)
+-++..+++-..+...++ ..+.||++.++..+-..-.+. .++.+-.+|+..+++|+...
T Consensus 749 ~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~f 813 (859)
T KOG1241|consen 749 ELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMF 813 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHc
Confidence 224445555555555554 346799999988876655443 24778888999999998775
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-27 Score=249.36 Aligned_cols=670 Identities=16% Similarity=0.182 Sum_probs=468.6
Q ss_pred hcCCChHHHHHHHHHHHH-hhhc---CchHHHHHHH-HHHcc--CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHH
Q 001307 31 LMSTSNEQRSEAELLFNL-CKQQ---DPDSLTLKLA-HLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSS 103 (1103)
Q Consensus 31 ~~s~d~~~r~~Ae~~L~~-~~~~---~p~~~~~~L~-~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ 103 (1103)
..+-|-.+|+.|--.|+. ++-. .|.....+.- +++.. ++++-+|...++++-..+.+.+-..|. .
T Consensus 57 ~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wp--------e 128 (885)
T KOG2023|consen 57 AKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWP--------E 128 (885)
T ss_pred ccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccch--------h
Confidence 345566678777777764 2221 2222111111 22222 567899999999998888876556673 3
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHh-------cccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh
Q 001307 104 LKSMLLQSIQLESAKSISKKLCDTVSELAS-------NILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1103)
Q Consensus 104 ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~-------~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (1103)
+...|.+.|.+ ++......+..++.+|.. .+++.....-++|.+++..+++++..|..|+.++..+.-.-+.
T Consensus 129 lLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 129 LLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred HHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 45577888887 465666666666666654 2233344566899999999999999999999999988876666
Q ss_pred hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001307 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1103)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~ 256 (1103)
.+-.++++++..+...-+|. +++||+..++++.-+.+... +.....++.+++.+....++.++++..+||+.|.
T Consensus 208 al~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~-----dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRP-----DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred HHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcH-----HhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 66668899999888888887 99999999999999988642 3344556677777777788889999999999999
Q ss_pred HHHccc--hHHHHHhHHHHHHHHHHhhcCCC----------c-------ch-----------------------------
Q 001307 257 ELAGTE--PRFLRRQLVDVVGSMLQIAEAES----------L-------EE----------------------------- 288 (1103)
Q Consensus 257 ~l~~~~--~~~~~~~~~~l~~~l~~~~~~~~----------~-------~~----------------------------- 288 (1103)
.+++.. ...+.+|+++++|.+++-+.-.+ . ++
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 999854 67789999999999886432111 0 00
Q ss_pred --------HHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHH
Q 001307 289 --------GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE 360 (1103)
Q Consensus 289 --------~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~ 360 (1103)
++|..+-..+..++. -|-..++|.++..+.+.-..++| -.+.++.-
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLan-------------vf~~elL~~l~PlLk~~L~~~~W-------------~vrEagvL 415 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLAN-------------VFGDELLPILLPLLKEHLSSEEW-------------KVREAGVL 415 (885)
T ss_pred cccccccccHhhccHHHHHHHHH-------------hhHHHHHHHHHHHHHHHcCcchh-------------hhhhhhHH
Confidence 123222222222222 12244555555555543333334 34456777
Q ss_pred HHHHHHHHcC--CCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChhHHHH
Q 001307 361 CLDRLAIALG--GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWA 437 (1103)
Q Consensus 361 ~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~ 437 (1103)
+++.+++..- --..+|.++|++.+.+.+..+-+|...++.|+..+.-... .-..++..++..++..+-|.|.+|+++
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHH
Confidence 7777776542 1244667899999999999889999999999877654322 223678888888889999999999999
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC--CCcchHHHHHHHHHHHHhcCCcccc-cCchHHHHHHHHHH---
Q 001307 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF--QNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVL--- 511 (1103)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~~v~~~a~~al~~l~~~~~~~~l-~~~l~~ll~~L~~~--- 511 (1103)
||.++..+-+..+++. .+|++.++..+..+++.- ++-. ....|++.+++.++...- ..|++-+|+.|+.-
T Consensus 496 AcsAfAtleE~A~~eL-Vp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 496 ACSAFATLEEEAGEEL-VPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh
Confidence 9999999999888888 689999999999888751 2333 345566666666543211 24788888888764
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhc-------CC-----cccchhhhHHHHHHHHHHHhh
Q 001307 512 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-------TD-----KSNRMLRAKSMECISLVGMAV 579 (1103)
Q Consensus 512 l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-------~~-----~~~~~lr~~a~~~l~~i~~~~ 579 (1103)
+.+.++.+ --.++|+++++.+.+..|.||.+.+...-..++++. .. ..++..-..+++.++.++.++
T Consensus 572 lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL 650 (885)
T KOG2023|consen 572 LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL 650 (885)
T ss_pred cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh
Confidence 44555443 457899999999999999998877776666655531 11 112334456899999999999
Q ss_pred ChhhhhhhHH--HHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCC
Q 001307 580 GKDKFRDDAK--QVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSD 657 (1103)
Q Consensus 580 ~~~~~~~~~~--~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d 657 (1103)
| ..+.|.+. .++++++.-... .-.++|..++..+|.+++.+.+...|++...++.+...+. +
T Consensus 651 g-~~ie~Lva~snl~~lll~C~~D---~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~--~---------- 714 (885)
T KOG2023|consen 651 G-SHIEPLVAQSNLLDLLLQCLQD---EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLN--P---------- 714 (885)
T ss_pred h-hchHHHhhhccHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCC--h----------
Confidence 9 66666543 367777763332 2235899999999999999999999999999999875442 1
Q ss_pred ccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccC-CHHHHHHHHHh
Q 001307 658 NEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSA 736 (1103)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~-~~~vr~~a~~~ 736 (1103)
+. +..-..|++++|+++..++....||+..++..++..++... ...+-...+
T Consensus 715 --------~~-----------------isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtA-- 767 (885)
T KOG2023|consen 715 --------EN-----------------ISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTA-- 767 (885)
T ss_pred --------hh-----------------chHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhh--
Confidence 10 11245699999999999999999999999988777665321 112222222
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhC
Q 001307 737 MPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1103)
Q Consensus 737 l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g 800 (1103)
+..|+.+...|+.+.+.++.++..++..+..-.|.+....++.++..++....
T Consensus 768 -----------ITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp 820 (885)
T KOG2023|consen 768 -----------ITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNP 820 (885)
T ss_pred -----------hhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCc
Confidence 23355555578888889999999999988877777788899999988887643
No 11
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=2.4e-24 Score=236.90 Aligned_cols=972 Identities=15% Similarity=0.173 Sum_probs=573.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
-+.-+|+.+-..+.+++.-|-+-+.-+...-++.-+..+.+-|++ +.....|-.+++-||..+..-.+..-..+.+.
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 345556666677889999999998866554444434555555554 55678899999999998876422222235555
Q ss_pred HHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHhcc---cCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q 001307 100 TQSSLKSMLLQSIQL-ESAKSISKKLCDTVSELASNI---LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~-e~~~~vr~~~~~~i~~ia~~~---~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 175 (1103)
.-..+...+.+.+.. +....++--.++.++.+.... .| +.-..++..+.-.++++...+|..+..+++.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~-~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP-NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc-chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 555566666666654 445556666666666655532 22 1223445555566677888999999999999999877
Q ss_pred hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH---hCCCHHHHHHHH
Q 001307 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL---NNGNEATAQEAL 252 (1103)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l---~~~~~~~~~~~~ 252 (1103)
.. .+..++.-+...|...++...-..-+++++.+.....+ .+...++.++..+.+.+ +..+.+.|..++
T Consensus 207 ~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~-----r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 207 RD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH-----RFGSHLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc-----hhhcccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 65 45667777777777664444444667888888765422 23344444555555555 556778899999
Q ss_pred HHHHHHHccchHHHHHhHHHHHHHHHHhhcCC--------------------------------CcchHHHHHHHHHHHH
Q 001307 253 ELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE--------------------------------SLEEGTRHLAIEFVIT 300 (1103)
Q Consensus 253 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~--------------------------------~~~~~~r~~a~~~l~~ 300 (1103)
+.+..+...+|..+.||.+++++.+++-+... |....+|..|..++..
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999988764210 0112478899888888
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCC-------------------cccccCCCCCccccCCCchhhHHHH
Q 001307 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD-------------------PLWHSAETEDEDAGESSNYSVGQEC 361 (1103)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-------------------~~w~~~~~e~ed~~~~~~~~~a~~~ 361 (1103)
++.. .+. .++.+.+.+-|.++..+.+.++. .+|..+++.-++ ......
T Consensus 359 ~IsS---R~E---~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~--~g~~s~----- 425 (1233)
T KOG1824|consen 359 VISS---RLE---MLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ--GGTPSD----- 425 (1233)
T ss_pred HHhc---cHH---HHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc--cCCccc-----
Confidence 8763 221 12344555555555555443322 233332111111 111110
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCC--hhHHHHHH
Q 001307 362 LDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRWAAI 439 (1103)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~--~~vr~~a~ 439 (1103)
+..+ ..-.|.+...+...+++.+.+.|..++..|..++...++...++++.++|.+...+.|.+ ...+..++
T Consensus 426 ~~~L------~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L 499 (1233)
T KOG1824|consen 426 LSML------SDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDAL 499 (1233)
T ss_pred hHHH------HhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHH
Confidence 0011 123455666666667777777999999999999999999999999999999999999864 35566666
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc------ccccCchHHHHHHHHHHhh
Q 001307 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 440 ~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~------~~l~~~l~~ll~~L~~~l~ 513 (1103)
..+.......+++...++.+.+.|.+..+..+ +-+++...|......+++...+ -...||+..++...++.+.
T Consensus 500 ~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d-~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 500 VFLYSALISHPPEVFHPHLSALSPPVVAAVGD-PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred HHHHHHHhcCChhhcccchhhhhhHHHHHhcC-chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHh
Confidence 55554444444443378999999999999999 8889988888888888876543 1246899999998888876
Q ss_pred c--CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001307 514 N--GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1103)
Q Consensus 514 ~--~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i 591 (1103)
. .+.+||+.|+.|+|.++...++.....++.++|.+.+.+++. ..|..|+.++..|+.+.-.-...|.+..+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE------iTRl~AvkAlt~Ia~S~l~i~l~~~l~~i 652 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE------ITRLTAVKALTLIAMSPLDIDLSPVLTEI 652 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch------hHHHHHHHHHHHHHhccceeehhhhHHHH
Confidence 5 468999999999999999999888889999999999998763 34778899999998765433455666666
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhh-hhHHHHHhcccCCCccccCCCCCccccCCCCcccch
Q 001307 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV-VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET 670 (1103)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~-i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 670 (1103)
++.+...... ..+.++-..+.++..+.+.++..+.+++-. ++..+...+.. .+..+. .-.++.
T Consensus 653 l~~l~~flrK---~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt------------~~a~~~ 716 (1233)
T KOG1824|consen 653 LPELASFLRK---NQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVT------------QLAVAF 716 (1233)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHH------------HHHHHH
Confidence 6666552210 123466788889999999999888876543 22222222210 000000 000000
Q ss_pred ---hhcCC--ceeeeechhHHHH----------HHHHHHHHHHHH---HhhhhccccHHHHHHHh-cccccccCCHHHHH
Q 001307 671 ---ITLGD--KRIGIKTSVLEEK----------ATACNMLCCYAD---ELKEGFFPWIDQVAPTL-VPLLKFYFHEEVRK 731 (1103)
Q Consensus 671 ---~~~~~--~~~~v~~~~~~~k----------~~A~~~l~~l~~---~~~~~~~p~~~~~~~~l-~~~l~~~~~~~vr~ 731 (1103)
...+- ....++...+++- -.|+.++-.+.. ..+..=.+|.. .+..+ .+..+ .....+.+
T Consensus 717 L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~-l~s~lt~PV~~-~~~~~l~k 794 (1233)
T KOG1824|consen 717 LTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYIS-LLSLLTAPVYE-QVTDGLHK 794 (1233)
T ss_pred HHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHH-HHHHHcCCccc-ccccchhH
Confidence 00000 0000111111110 011111111111 11111112321 22111 11111 11223444
Q ss_pred HHHHhHHHHHHHHHHHH------------------------------HcCCCCC-CCHHHHHHHHHHHHHHHHHHHccCC
Q 001307 732 AAVSAMPELLRSAKLAI------------------------------EKGLAPG-RNESYVKQLSDFIIPALVEALHKEP 780 (1103)
Q Consensus 732 ~a~~~l~~l~~~~~~~~------------------------------~~g~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~ 780 (1103)
.|...++.++.....+. ..|..+. ........+... +++.+.. +
T Consensus 795 qa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~----iieaf~s-p 869 (1233)
T KOG1824|consen 795 QAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDT----IIEAFNS-P 869 (1233)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHH----HHHHcCC-C
Confidence 44444433332221110 0011111 111111112221 2233332 3
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH------HHHHhHHHHHHhhcCCCCC---hHhhhhhh-hhh
Q 001307 781 DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT------ASSSRKRERAERAKAEDFD---AEESELIK-EEN 850 (1103)
Q Consensus 781 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~~e~~d---~~~~~~~~-~~~ 850 (1103)
..++..++-.++..+- +|. .+.+++.++..+..-=+ .++.. -......+..- ++-+..+. .-.
T Consensus 870 ~edvksAAs~ALGsl~--vgn--l~~yLpfil~qi~sqpk~QyLLLhSlke---vi~~~svd~~~~~v~~IW~lL~k~cE 942 (1233)
T KOG1824|consen 870 SEDVKSAASYALGSLA--VGN--LPKYLPFILEQIESQPKRQYLLLHSLKE---VIVSASVDGLKPYVEKIWALLFKHCE 942 (1233)
T ss_pred hHHHHHHHHHHhhhhh--cCc--hHhHHHHHHHHHhcchHhHHHHHHHHHH---HHHHhccchhhhhHHHHHHHHHHhcc
Confidence 4455555555554331 111 12233222222111000 00000 00000000000 00011000 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH
Q 001307 851 EQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE 930 (1103)
Q Consensus 851 e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 930 (1103)
..++..|..+++|+|.++-.-++. ++|.+...+ .+..+..|..++..+.-.+..-++.+.++..+.+..++.
T Consensus 943 ~~eegtR~vvAECLGkL~l~epes-------LlpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~ 1014 (1233)
T KOG1824|consen 943 CAEEGTRNVVAECLGKLVLIEPES-------LLPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLK 1014 (1233)
T ss_pred cchhhhHHHHHHHhhhHHhCChHH-------HHHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHH
Confidence 112234888999999999877665 566665555 355677888888877766666566666666655555543
Q ss_pred -----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhc--CC----------CCCChhhhhHHHHHHHHHHHHH
Q 001307 931 -----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR--HP----------NALQPENLMAYDNAVSALGKIC 987 (1103)
Q Consensus 931 -----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~--~~----------~~~~~~~~~~~~na~~al~~l~ 987 (1103)
.|.-++...+-+-+.-++..++++++.|+.--. ++ .+-.|+....|..|..|+..++
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLL 1094 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLL 1094 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHH
Confidence 666677777777666778888888888875432 22 1224678899999999999999
Q ss_pred hhcCCCCCHhhHHHHHHhcCCCCCcHHHHHH-HHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCC--------CC
Q 001307 988 QFHRDSIDAAQVVPAWLNCLPIKGDLIEAKI-VHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK--------DL 1058 (1103)
Q Consensus 988 ~~~~~~~~~~~~l~~~l~~lp~~~D~~e~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~--------~~ 1058 (1103)
..+-+.+++-+++...-.+| +|+...+. .|..+.++...-|..|.. .+.++++-+....+.+ +.
T Consensus 1095 dscld~~dit~Fl~~~~~GL---~DhydiKmlt~l~l~rLa~lcPs~Vlq----rlD~l~EpLr~t~~~k~k~~svKqE~ 1167 (1233)
T KOG1824|consen 1095 DSCLDRLDITEFLNHVEDGL---EDHYDIKMLTFLMLARLADLCPSAVLQ----RLDRLVEPLRKTCTLKVKANSVKQEF 1167 (1233)
T ss_pred HhhhhhccHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHhhCcHHHHH----HHHHHHHHHHHHhhcccccchHhHhH
Confidence 99999888889998777777 56666554 777888888777777766 4778877777666411 11
Q ss_pred -CCHHHHHHHHHHHHHH
Q 001307 1059 -ATEQTLSRIVNLLKQL 1074 (1103)
Q Consensus 1059 -~~~~~~~~~~~~l~~l 1074 (1103)
...+.++...+++..+
T Consensus 1168 ek~~eLkRSAlRav~~L 1184 (1233)
T KOG1824|consen 1168 EKQDELKRSALRAVAAL 1184 (1233)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 1356777777777666
No 12
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-22 Score=219.36 Aligned_cols=517 Identities=14% Similarity=0.201 Sum_probs=320.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccc-----cCC
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~-----~l~ 97 (1103)
+.++|++..|||..+++.||++|+++++ +|+.| ..|..+..+ +.+-.+|-+|++.+|+-+.+. |+ .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPGF~-~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPGFF-SKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCcHH-HHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4578999999999999999999999999 78765 888888876 566899999999999999987 65 489
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC----CHhHHHHHHHHHHHhhhh
Q 001307 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQY 173 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~----~~~~r~~al~~l~~l~~~ 173 (1103)
+++|..||..++..+. |+++.+..+.|.++++||+-++| ..||+++|.|.+.+++. |.......+..+..+.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 57999999999999999999999 89999999999998876 766667778888887776
Q ss_pred hhhh--------chhhHHHHHHHHHHhhCCC------------------CChHHHHHHHHHHHHHHHh-cCCcchHhHHH
Q 001307 174 IGDT--------LTPHLKHLHAVFLNCLTNS------------------NNPDVKIAALNAVINFIQC-LTSSADRDRFQ 226 (1103)
Q Consensus 174 ~~~~--------l~~~~~~l~~~l~~~l~~~------------------~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~ 226 (1103)
.+.. |.+..+.+++++...+-++ +...+...+++++..++.+ +.++...+ +.
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~ 232 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FF 232 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HH
Confidence 5421 2233444444333222221 0122333466777766654 22222222 33
Q ss_pred hhHHHHHHHHH----HHHhCCCHHHH--------HHHHHHHHHHHccchHHHHH--hHHHHHHHHHHhhcC---------
Q 001307 227 DLLPLMMRTLT----ESLNNGNEATA--------QEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEA--------- 283 (1103)
Q Consensus 227 ~~ip~ll~~l~----~~l~~~~~~~~--------~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~--------- 283 (1103)
.-++.+++.=. ..+..+...++ ..-.+++..+.+.+|-.|.. ..+..+++.+.....
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 33444444311 11111111111 22234445555655544443 233333433332211
Q ss_pred --CCcchHHHHHHHHHHHHHHHhhhccchhh-h--------------c------chhhHHHHHHHHHHhhc--CCCCCcc
Q 001307 284 --ESLEEGTRHLAIEFVITLAEARERAPGMM-R--------------K------LPQFINRLFAILMSMLL--DIEDDPL 338 (1103)
Q Consensus 284 --~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~--------------~------~~~~~~~l~~~l~~~l~--~~~~~~~ 338 (1103)
...-++...+++..+..+...+.+.++.. + + ..+.+..+...++.+.- ..+|-++
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11223445566666664443321221100 0 0 01122233444443221 2233456
Q ss_pred cccCCCC---CccccCC--CchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC---------ChHHHHHHHHHHHHH
Q 001307 339 WHSAETE---DEDAGES--SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQI 404 (1103)
Q Consensus 339 w~~~~~e---~ed~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~l 404 (1103)
|..+++. +++..++ ..+..|...+..+...++ +-+.|.++..+.+..+.. ..-.+.|.+.++|..
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~ 471 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLA 471 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 7765543 1111122 234467777777887776 677888888775543322 134667777777766
Q ss_pred HhhcHHHHHHhHHH-HHHHHHhcCCC---CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHH
Q 001307 405 AEGCAKVMVKNLEQ-VLSMVLNSFRD---PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1103)
Q Consensus 405 ~~~~~~~~~~~l~~-i~~~l~~~l~d---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1103)
+....+.+ .+++ +...+++-+.. ..-.+|+..++.+|+-... .+..+..+.+...+++.+++..+..|+.+
T Consensus 472 a~~l~~~~--dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~lnLL~d~~D~vV~Lt 546 (978)
T KOG1993|consen 472 AYELSNIL--DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAFLNLLQDQNDLVVRLT 546 (978)
T ss_pred HHHHHhcC--CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHHHHhcCccccceeehH
Confidence 54433211 1111 12233333332 2334788999999987653 22245566778888899998447789999
Q ss_pred HHHHHHHHHhcC--CcccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 481 AASAVLNFSENC--TPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 481 a~~al~~l~~~~--~~~~l~~~l~~ll~~L~~~l~~~~-~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
+..++...++.. .++.+.||++.+...+++++..-. -+.|..++..++.++..+++.+.||...++.++-.+++.
T Consensus 547 t~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~ 624 (978)
T KOG1993|consen 547 TARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEE 624 (978)
T ss_pred HHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 999999999864 456688999999999888876533 345666777777777777776667777666666666543
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.95 E-value=5.7e-22 Score=218.56 Aligned_cols=602 Identities=17% Similarity=0.215 Sum_probs=383.2
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CChhHHHHHHHHHHHhcccCCCCccc---
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~a~~~L~~~i~~~~~~~w~--- 94 (1103)
++.+.+..+|.+++|+|+++|.+||.+|+++.. +++|-..|..+..+. ..-..||.|.++|++.+.++|...++
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr 78 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFR 78 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhcc
Confidence 345678999999999999999999999999987 456789999999874 67889999999999999998321111
Q ss_pred ---cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 95 ---~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
..+.+.|..||..|++.+.+ ++..+|..++.+++.|+..++| +.||+++|.+..++.+++.+.-.+|+++|..+.
T Consensus 79 ~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 79 YPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred CCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 14578899999999999995 7999999999999999999999 899999999999999999888999999999998
Q ss_pred hhhhhh-c----hhhHHHHHHHHHHhhCCCCChHHHHHHH--HHHHHHHHhcCCc------chHhHHHhhHHHHHHHHHH
Q 001307 172 QYIGDT-L----TPHLKHLHAVFLNCLTNSNNPDVKIAAL--NAVINFIQCLTSS------ADRDRFQDLLPLMMRTLTE 238 (1103)
Q Consensus 172 ~~~~~~-l----~~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~l~~~~~~~------~~~~~~~~~ip~ll~~l~~ 238 (1103)
...... . ...++.+...+. ..... +...|..++ +.+.++..-+... .....+...++.+++.+..
T Consensus 157 ~ev~~ee~~~~~~~~l~~m~~~f~-~~~~~-s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 157 DEVDVEEMFFVGPVSLAEMYRIFA-LTIVY-SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHHHHHHhcccccchhhhhhhhh-hcccc-chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 775322 1 112333333322 22222 344444444 4444444332211 0112233455666666666
Q ss_pred HHhCC---CHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcC--------------------CCcch------H
Q 001307 239 SLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------ESLEE------G 289 (1103)
Q Consensus 239 ~l~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~--------------------~~~~~------~ 289 (1103)
.++-. +...+...+.++..+.+..|..+.+++...++..++.... .+.++ .
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~ 314 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVET 314 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHH
Confidence 55432 3456788899999999999988888877776666654311 01111 1
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC-CCcccccCCC---CCccccCCCchhhHHHHHHHH
Q 001307 290 TRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE-DDPLWHSAET---EDEDAGESSNYSVGQECLDRL 365 (1103)
Q Consensus 290 ~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~w~~~~~---e~ed~~~~~~~~~a~~~l~~l 365 (1103)
.-...++|+..++........ ...-+..+++.+..++.-.+ .-..|..+.. ++|+++ ...+..+...+-.+
T Consensus 315 l~i~i~eF~s~i~t~~~~~~t----i~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~~~~v 389 (1005)
T KOG2274|consen 315 LVIQIVEFLSTIVTNRFLSKT----IKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDLLLEV 389 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHHHHHH
Confidence 234567788887775221111 11122333333333332211 1123544322 122222 23334455556666
Q ss_pred HHHcCCCcchHHHHHHHHH---------hhcCC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhH
Q 001307 366 AIALGGNTIVPVASEQLPA---------YLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRV 434 (1103)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~---------~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~v 434 (1103)
...+|...+.| +.+.... .++.. .|+...+.+.+......+ +.....+..+...+..++. ...|..
T Consensus 390 ~~~f~~~~i~~-i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~l~~l~~~~~~~l~~~e~P~L 466 (1005)
T KOG2274|consen 390 ITTFGNEGINP-IQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDKLIELTIMIDNGLVYQESPFL 466 (1005)
T ss_pred HHhccchhhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHHHHHHHHHHHhhcccccCHHH
Confidence 66666433333 3333211 12223 477777777766665532 2223455566666666664 456777
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc
Q 001307 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~ 514 (1103)
-..+.++++.++...... .+....++...+..+.-...+-++.+|+.++..++ +...+.++++.+++.|.++...
T Consensus 467 l~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~ 541 (1005)
T KOG2274|consen 467 LLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASK 541 (1005)
T ss_pred HHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccc
Confidence 779999999888764322 24455666666666654255667777887776666 6677899999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHH
Q 001307 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 594 (1103)
Q Consensus 515 ~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~ 594 (1103)
.+..+.....+++..++..-++.-..--..+.|.+..++.+.+++. .+-..+-+++-.+.... ....|+....++.
T Consensus 542 ~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~--~~~g~m~e~~iPs 617 (1005)
T KOG2274|consen 542 SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQIA--ANYGPMQERLIPS 617 (1005)
T ss_pred ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHH--HhhcchHHHHHHH
Confidence 8888888888999888876554222334567888888877654433 45555666666555422 4566788888888
Q ss_pred HHHHhcCCC-CCCCchhhHHHHHHHHHHhHhcCCccc-chhhhhHHHHHhc
Q 001307 595 LMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFLP-YMSVVMPPLLQSA 643 (1103)
Q Consensus 595 l~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~p-~l~~i~~~ll~~~ 643 (1103)
+++..+... .........++..+..+.+..++.+.. .+....|.+.+..
T Consensus 618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 887554322 112235556666677677766655432 2233455555543
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-19 Score=192.28 Aligned_cols=483 Identities=15% Similarity=0.147 Sum_probs=292.5
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCcccc----
Q 001307 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR---- 95 (1103)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~---- 95 (1103)
.+.+.+.+.+.++.|..+|+.||+.|+++.+ +|+ |+..+++++.+ .-++.+|+.|++++||.+.+. |..
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 5678899999999999999999999999999 675 67999999987 478999999999999999998 765
Q ss_pred -CCHHHHHHHHHHHHH----HHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 001307 96 -LSLHTQSSLKSMLLQ----SIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1103)
Q Consensus 96 -l~~~~~~~ik~~ll~----~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (1103)
.+++.+..+|..+++ .... .....|...-.++..|...++|.+.|+ +.|...+++.+++..+.-.|+.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 233444445554444 4443 345566666667777788899989999 999999999999998889999999999
Q ss_pred hhhhh-----h--hchhhHHHHHHHHHHh---hCC-C--CChHHHHHHHHHHHHHHHh-cCCc-chHhHHHhhHHHHHHH
Q 001307 171 SQYIG-----D--TLTPHLKHLHAVFLNC---LTN-S--NNPDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMMRT 235 (1103)
Q Consensus 171 ~~~~~-----~--~l~~~~~~l~~~l~~~---l~~-~--~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~~~~~ip~ll~~ 235 (1103)
++... + .+.+.+..++|++.+. +.+ . .+.++-...++.+....-+ ++.. ...+.|..++...+..
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 87521 1 1223344445554432 222 1 1233333444444433322 1110 0223345555555555
Q ss_pred HHHHHh----CCCHHHHH---------HHHHHHHHHHccchHH------------HHHhHHHHHHHHHHhhcCCCcch-H
Q 001307 236 LTESLN----NGNEATAQ---------EALELLIELAGTEPRF------------LRRQLVDVVGSMLQIAEAESLEE-G 289 (1103)
Q Consensus 236 l~~~l~----~~~~~~~~---------~~~~~l~~l~~~~~~~------------~~~~~~~l~~~l~~~~~~~~~~~-~ 289 (1103)
+..-+. +-++++|. -|+..+..+...+.+. +...++.++...++....-.... -
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 443221 12455543 3444555555444221 11223333333333321100000 0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcCCC-CCcccccCCCCC------ccccCCCchhhHHHH
Q 001307 290 TRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIE-DDPLWHSAETED------EDAGESSNYSVGQEC 361 (1103)
Q Consensus 290 ~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~-~~~~w~~~~~e~------ed~~~~~~~~~a~~~ 361 (1103)
+....+.++..+.+.--..-..++-..|+++-++.. +++.++-.+ +.+.|..++++- --++..++.-++..+
T Consensus 314 lsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~f 393 (970)
T COG5656 314 LSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFF 393 (970)
T ss_pred cchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHH
Confidence 122233333333331001112334455666655543 344444332 223454333210 001122222334444
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhhc-------C-CChHHHHHHHHHHHHHHhhcH--HHHHHhHHH-HHHHHHhcCCCC
Q 001307 362 LDRLAIALGGNTIVPVASEQLPAYLA-------A-PEWQKHHAALIALAQIAEGCA--KVMVKNLEQ-VLSMVLNSFRDP 430 (1103)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~l~~~l~-------~-~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~-i~~~l~~~l~d~ 430 (1103)
+-.....-+ +..+..+++++...+. + .+.+..++|+..++++..-.. ......+.. +++.+.+.++++
T Consensus 394 l~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ 472 (970)
T COG5656 394 LIISKSKRK-EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN 472 (970)
T ss_pred HHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc
Confidence 544444444 5666667777776662 1 357888999999998876221 223334443 667888899999
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc-ccccCchHHHHHHHH
Q 001307 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLL 509 (1103)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~l~~~l~~ll~~L~ 509 (1103)
....|..||..++.+.+.++. .....+++....+++++ .+-.|+..|..|+..|+.+-.. +.+..+.+..|+.|+
T Consensus 473 ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL 548 (970)
T COG5656 473 YGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL 548 (970)
T ss_pred ccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence 999999999999999888765 34567888888899988 7788999999999999866422 235678888888888
Q ss_pred HHhhcCC
Q 001307 510 VLLQNGK 516 (1103)
Q Consensus 510 ~~l~~~~ 516 (1103)
++-+.-+
T Consensus 549 sLSn~fe 555 (970)
T COG5656 549 SLSNTFE 555 (970)
T ss_pred Hhccccc
Confidence 7655433
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.8e-19 Score=192.01 Aligned_cols=736 Identities=16% Similarity=0.190 Sum_probs=465.4
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1103)
.+...++.. ++. .+..|.++++.+..=...+. ....|..++|.+++.- -+...|...+.++..+.....
T Consensus 364 ~i~~llLkv-KNG-~ppmRk~~LR~ltdkar~~g---a~~lfnqiLpllMs~t------LeDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 364 KIMRLLLKV-KNG-TPPMRKSALRILTDKARNFG---AGPLFNQILPLLMSPT------LEDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred HHHHHHHhh-cCC-CchhHHHHHHHHHHHHHhhc---cHHHHHHHHHHHcCcc------ccchhhhhHHHHHHHHHHhhc
Confidence 344444433 343 67889999988876665442 2234555555444321 133456667777777776666
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001307 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1103)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~ 343 (1103)
...++|+..|+-.+-.++ -+.+-..|...-+++..++.. + .+ ..++.. |.-. .
T Consensus 433 dlvrpYVhkILvViepll--ided~yar~egreIisnLaka---a-----Gl----a~mist----mrpD-----i---- 485 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLL--IDEDYYARVEGREIISNLAKA---A-----GL----ATMIST----MRPD-----I---- 485 (1172)
T ss_pred ccchhceeeeEEEeecce--ecchHHHhhchHHHHHHHHHH---h-----hh----HHHHHh----hcCC-----c----
Confidence 666777665543222222 133455677777788878762 1 01 111111 1100 0
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001307 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1103)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1103)
+. .+.-.++....++..++.++| .|.++|++.....|. +|+.|+.++.+..+++.-.+..+.+|+..++..
T Consensus 486 -dn---~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~i 557 (1172)
T KOG0213|consen 486 -DN---KDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKI 557 (1172)
T ss_pred -cc---ccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHH
Confidence 00 011245566778888998888 577788888888776 899999999999999988877888999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchH
Q 001307 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1103)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~ 502 (1103)
+-.++.|.+..||-.++.+++.+++...|.- ...++.++..|-+.+.. .....-.+-..|++.++....++.-.-|-.
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTr 635 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTR 635 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHH
Confidence 9999999999999999999999999887754 46678888888888876 444455566677777777666553223455
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChh
Q 001307 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (1103)
Q Consensus 503 ~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1103)
.+|-.+..-+++++...++.++..+..++...|..-.=....++|.++..+....-.-++..-.+..++-..++..+|..
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~ 715 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD 715 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch
Confidence 77888888889999999999999999998876643221224455555544333111111111223466777888888832
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcC-Ccccch-hhhhHHHHHhcccCCCccccCCCCCccc
Q 001307 583 KFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEI 660 (1103)
Q Consensus 583 ~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~l-~~i~~~ll~~~~~~~~~~~~~~~~d~~~ 660 (1103)
+.+..++. .+. +..++.|..+..+..++...+|. +|..-+ ..++.-++-.++.+..
T Consensus 716 ---~~v~R~v~---~lk----de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt------------ 773 (1172)
T KOG0213|consen 716 ---PIVSRVVL---DLK----DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT------------ 773 (1172)
T ss_pred ---HHHHHHhh---hhc----cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc------------
Confidence 22222222 122 22345777788888888888774 354333 2455555555543210
Q ss_pred cCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHH
Q 001307 661 EDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 740 (1103)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 740 (1103)
++. .-+..++.+...++....||+++++..++..+++. +..+|+.|+.+++.+
T Consensus 774 ----~d~----------------------vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 774 ----EDS----------------------VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLISSL 826 (1172)
T ss_pred ----chh----------------------hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHHHHH
Confidence 000 12346888889999999999999999999999865 799999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 001307 741 LRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT 820 (1103)
Q Consensus 741 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~ 820 (1103)
...++.+. .+ +++..+=-.|.+.+.+ ..+++...++.++..++...|-.-...-+..+++.+...|+
T Consensus 827 a~Vlktc~---------ee---~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 827 AKVLKTCG---------EE---KLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred HHHHHhcc---------HH---HHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 88876541 12 2222322334555554 48899999999999998888763222235566777777776
Q ss_pred HHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhh--hHHHHHHhhhhhccCCCCHHH
Q 001307 821 ASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP--FFDELSSYLTPMWGKDKTAEE 898 (1103)
Q Consensus 821 ~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~ 898 (1103)
+.. +.+.+++.+++|.++...++ +.+ -+-.|.=-++++|+ ....+.
T Consensus 894 nrh------------------------------eKVqen~IdLvg~IadrgpE-~v~aREWMRIcfeLlelLk-ahkK~i 941 (1172)
T KOG0213|consen 894 NRH------------------------------EKVQENCIDLVGTIADRGPE-YVSAREWMRICFELLELLK-AHKKEI 941 (1172)
T ss_pred hhH------------------------------HHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 632 24677899999999987555 332 22234444555553 345678
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCC
Q 001307 899 RRIAICIFDDVAEQCREAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA 967 (1103)
Q Consensus 899 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 967 (1103)
|..+..+||.+.+..|+. .++-.+++ ...-|+++.++.++. ..+++.|.+--..|
T Consensus 942 RRaa~nTfG~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p------FtVLPalmneYrtP-- 1007 (1172)
T KOG0213|consen 942 RRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP------FTVLPALMNEYRTP-- 1007 (1172)
T ss_pred HHHHHhhhhHHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc------hhhhHHHHhhccCc--
Confidence 899999999999999975 56666665 445678888888763 14566676666666
Q ss_pred CChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHH
Q 001307 968 LQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKI 1045 (1103)
Q Consensus 968 ~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i 1045 (1103)
+..+...+..+++-+..+-++.- .+-.+.|.+-+.|- ..|..-.+.+...+-.+.- +.+ -.+ ...-+
T Consensus 1008 ----e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlm-DrD~vhRqta~~~I~Hl~L-g~~-g~g----~eda~ 1076 (1172)
T KOG0213|consen 1008 ----EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALM-DRDLVHRQTAMNVIKHLAL-GVP-GTG----CEDAL 1076 (1172)
T ss_pred ----hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhc-cccHHHHHHHHHHHHHHhc-CCC-CcC----cHHHH
Confidence 46677777888888888765532 23345665555552 1232222222222223321 211 112 22222
Q ss_pred HHHH----HHHhcCCCCCCHHHHHHHHHHHHHHHhhCC-hhhHHHHHhcC
Q 001307 1046 VSVF----AEILCGKDLATEQTLSRIVNLLKQLQQTLP-PATLASTWSSL 1090 (1103)
Q Consensus 1046 ~~~~----~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~l 1090 (1103)
+.++ .+++. .++-+.+++.+.+..+....+ +..++=+|+.|
T Consensus 1077 iHLLN~iWpNIle----~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1077 IHLLNLIWPNILE----TSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGL 1122 (1172)
T ss_pred HHHHHHhhhhhcC----CChHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence 2222 23332 245677888888888877755 44455555554
No 16
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=9.6e-18 Score=175.51 Aligned_cols=706 Identities=13% Similarity=0.164 Sum_probs=435.2
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcC--CCHhHHHHHHHHHHHhhhhhhhh-----------chh-h
Q 001307 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDT-----------LTP-H 181 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s--~~~~~r~~al~~l~~l~~~~~~~-----------l~~-~ 181 (1103)
+++.+|..+-.-+-.+.+ +.+..++..+.+.+-+ +++..|..+-.+|..-...-.+. +.+ .
T Consensus 17 pD~n~rl~aE~ql~~l~~-----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 17 PDPNARLRAEAQLLELQS-----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred CCCCccccHHHHHHHhcc-----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 566666655544444433 4566666666666544 34566766666555433221111 111 2
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHc
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA-TAQEALELLIELAG 260 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~-~~~~~~~~l~~l~~ 260 (1103)
-+++-...+..|.++ .+..-.+|...+..+...- .-...+|.++..+.....++.|. ....++..++-.++
T Consensus 92 k~qvK~~al~aL~s~-epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 92 KEQVKGMALRALKSP-EPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 345666778889987 8888888888888887641 11356888888888877766554 45677888888887
Q ss_pred cc-hHHHHHhHHHH-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001307 261 TE-PRFLRRQLVDV-VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1103)
Q Consensus 261 ~~-~~~~~~~~~~l-~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1103)
.. |+.+......+ +..+..... ...+..+|..|+..+..=+. +++..+ .+
T Consensus 164 s~~Pe~li~~sN~il~aiv~ga~k-~et~~avRLaaL~aL~dsl~--------------fv~~nf-------~~------ 215 (858)
T COG5215 164 SEAPEDLIQMSNVILFAIVMGALK-NETTSAVRLAALKALMDSLM--------------FVQGNF-------CY------ 215 (858)
T ss_pred ccCHHHHHHHhhHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHH--------------HHHHhh-------cc------
Confidence 65 43444333333 232222222 34566788888777654222 011000 00
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001307 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1103)
Q Consensus 339 w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1103)
+.=...+++...+..++++-...+++.-++..+..-..+++.+++.+
T Consensus 216 ---------------------------------E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~ 262 (858)
T COG5215 216 ---------------------------------EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN 262 (858)
T ss_pred ---------------------------------hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001123333445556677778888888888777666777778876
Q ss_pred HH-HHHHhcCCCCChhHHHHHHHHHHHhhhhh-chhHHhhh---------------hhhhHHHHHhhccCC------CCc
Q 001307 419 VL-SMVLNSFRDPHPRVRWAAINAIGQLSTDL-GPDLQNQF---------------HPQVLPALAGAMDDF------QNP 475 (1103)
Q Consensus 419 i~-~~l~~~l~d~~~~vr~~a~~~L~~l~~~~-~~~~~~~~---------------~~~il~~l~~~l~~~------~~~ 475 (1103)
.+ ......++++|..|...|....+.+|+.- ...+...| ...++|.+++.|... .++
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 54 44556789999999999988888877632 11111122 345888888887541 356
Q ss_pred chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh-hhHhhHhhhhHHHHHHHh
Q 001307 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILV 554 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~ 554 (1103)
.+..+|..+|.-|.+..+...+ .+++..+-+.+++++..-|+.+.-++|++-..-.+ ...+|.++.+|.+...+.
T Consensus 343 n~smaA~sCLqlfaq~~gd~i~----~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~ 418 (858)
T COG5215 343 NPSMAASSCLQLFAQLKGDKIM----RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS 418 (858)
T ss_pred chhhhHHHHHHHHHHHhhhHhH----HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence 7888999999999999886544 44667777788889999999999999999865443 356788888888877653
Q ss_pred hcCCcccchhhhHHHHHHHHHHHhhChhhhhhh--HHHHHHHH-HHHhcCCCCCCCch-hhHHHHHHHHHHhHhc-----
Q 001307 555 NATDKSNRMLRAKSMECISLVGMAVGKDKFRDD--AKQVMEVL-MSLQGSQMETDDPT-TSYMLQAWARLCKCLG----- 625 (1103)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~--~~~i~~~l-~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~----- 625 (1103)
+...-++..+-+|++.|+..+. +.+.|. +....... ..++. .|. ...+...+.+++..+.
T Consensus 419 ----D~~l~vk~ttAwc~g~iad~va-~~i~p~~Hl~~~vsa~liGl~D------~p~~~~ncsw~~~nlv~h~a~a~~~ 487 (858)
T COG5215 419 ----DSCLWVKSTTAWCFGAIADHVA-MIISPCGHLVLEVSASLIGLMD------CPFRSINCSWRKENLVDHIAKAVRE 487 (858)
T ss_pred ----cceeehhhHHHHHHHHHHHHHH-HhcCccccccHHHHHHHhhhhc------cchHHhhhHHHHHhHHHhhhhhhcc
Confidence 3344578888999999998876 545442 33333322 22322 222 1222223334444332
Q ss_pred --CCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhh
Q 001307 626 --QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1103)
Q Consensus 626 --~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~ 703 (1103)
.-+.+|.+.++..|++......+ . ...+..+..+|+++...++
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~N----------------------------e-------~n~R~s~fsaLgtli~~~~ 532 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALN----------------------------E-------SNLRVSLFSALGTLILICP 532 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcc----------------------------c-------hhHHHHHHHHHHHHHhhcc
Confidence 33567777777777766532100 0 1124566778888888877
Q ss_pred hhccccHHHHHHHhcccccc-------c-------CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 001307 704 EGFFPWIDQVAPTLVPLLKF-------Y-------FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFII 769 (1103)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~-------~-------~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 769 (1103)
+...|.+..+...+.+.++. . ..++++..-+..+..+++.. + ++ +...-++++
T Consensus 533 d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~------~----~~---ie~v~D~lm 599 (858)
T COG5215 533 DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR------R----RD---IEDVEDQLM 599 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc------C----CC---cccHHHHHH
Confidence 76555443333333222221 0 11223333222222222221 1 11 222334455
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhh
Q 001307 770 PALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 849 (1103)
Q Consensus 770 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 849 (1103)
..+++.+.+.....+..+++.++..+...++..+ ..|+..+++.+.+.++.
T Consensus 600 ~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~F-e~y~~~fiPyl~~aln~---------------------------- 650 (858)
T COG5215 600 ELFIRILESTKPTTAFGDVYTAISALSTSLEERF-EQYASKFIPYLTRALNC---------------------------- 650 (858)
T ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHhcc----------------------------
Confidence 5566666555444455566666666655544311 23344444444333321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCC-HHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHH
Q 001307 850 NEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT-AEERRIAICIFDDVAEQCREAALKYYETYLPFL 928 (1103)
Q Consensus 850 ~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 928 (1103)
.+..+...+..++|.+++.+|..|.+|-..++..+.+++.+... .+.|=..+++||++.-..|..+.+|++.++-.+
T Consensus 651 --~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 651 --TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34568889999999999999999999999999999998854332 245667899999999999999999999998877
Q ss_pred HH------------------------H-HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHH
Q 001307 929 LE------------------------A-AVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSAL 983 (1103)
Q Consensus 929 ~~------------------------~-a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al 983 (1103)
.+ + |--|+|.-..+-.+.+.||+..+.+.+-.+-.+|+. .+.....|++-+
T Consensus 729 qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~----se~~traalGLi 804 (858)
T COG5215 729 QQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNG----SEAHTRAALGLI 804 (858)
T ss_pred HHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCcc----chhHHHHHHHHH
Confidence 65 2 233566666655667899999999988877777743 345556788999
Q ss_pred HHHHhhcCCC
Q 001307 984 GKICQFHRDS 993 (1103)
Q Consensus 984 ~~l~~~~~~~ 993 (1103)
|.+...+|..
T Consensus 805 gDla~mfpkg 814 (858)
T COG5215 805 GDLAGMFPKG 814 (858)
T ss_pred HHHHHhCCCc
Confidence 9998887764
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.90 E-value=4.2e-17 Score=175.49 Aligned_cols=686 Identities=16% Similarity=0.219 Sum_probs=428.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCC--Cccc---
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDS--FLWP--- 94 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~--~~w~--- 94 (1103)
..+..+|..+.++.+..|+.|-..|..=... -+.-....++.++-+ +-+..-|++-.-.+.+.+.+-+. .-+.
T Consensus 363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkI 442 (1172)
T KOG0213|consen 363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKI 442 (1172)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeee
Confidence 4567778888888889999999888653331 122223444444444 55667788777666666554210 0000
Q ss_pred -------cCCHHHHH-----HHHHHHHH---------HHhh---cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHH
Q 001307 95 -------RLSLHTQS-----SLKSMLLQ---------SIQL---ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQ 150 (1103)
Q Consensus 95 -------~l~~~~~~-----~ik~~ll~---------~l~~---e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~ 150 (1103)
.++++... +|...|.. .+.- ..++-||+..+.+.+.++++. ..|.++|+|..
T Consensus 443 LvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLka 518 (1172)
T KOG0213|consen 443 LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKA 518 (1172)
T ss_pred EEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHH
Confidence 02222221 12222221 1111 147789999999999999974 68999999999
Q ss_pred hhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH
Q 001307 151 CVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1103)
Q Consensus 151 ~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~i 229 (1103)
.+.|. +|..|+.++.+...++...+-...+|+..++.++..++.|. +..||..+..++..+++.. .+...+.|.
T Consensus 519 vc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~itAlalsalaeaa-~Pygie~fD--- 593 (1172)
T KOG0213|consen 519 VCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTITALALSALAEAA-TPYGIEQFD--- 593 (1172)
T ss_pred HhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhHHHHHHHHHHHhc-CCcchHHHH---
Confidence 99997 88999999999999999999888899999999999999997 9999999999999988764 222233343
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHh-HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhcc
Q 001307 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ-LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1103)
Q Consensus 230 p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 308 (1103)
.+++.|..-+..........-+++++-++-........+ ..+++-.+..-.. ..|++.+...+..+..+|......
T Consensus 594 -sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~--sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 594 -SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG--SPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred -HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHhcccCCC
Confidence 455555554443333333334444444443222222222 2233333343332 346777777788888777753322
Q ss_pred chhhhcchhhHHHHHHHHHHhh-----------------------cCCCCCcccccCCCCCccccCCCc-hhhHHHHHHH
Q 001307 309 PGMMRKLPQFINRLFAILMSML-----------------------LDIEDDPLWHSAETEDEDAGESSN-YSVGQECLDR 364 (1103)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l-----------------------~~~~~~~~w~~~~~e~ed~~~~~~-~~~a~~~l~~ 364 (1103)
|...+ ..++|..+... .+...++-....- ++-.++... ++....++++
T Consensus 671 ~~y~r------~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v--~~lkde~e~yrkm~~etv~r 742 (1172)
T KOG0213|consen 671 PAYIR------FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVV--LDLKDEPEQYRKMVAETVSR 742 (1172)
T ss_pred HHHHh------hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHh--hhhccccHHHHHHHHHHHHH
Confidence 32221 12222222211 1110000000000 000112223 3456777888
Q ss_pred HHHHcCCCcchHHHHHH----HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHH
Q 001307 365 LAIALGGNTIVPVASEQ----LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAIN 440 (1103)
Q Consensus 365 l~~~~~~~~~~~~l~~~----l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 440 (1103)
+...+|...+-..+-.. +...++.++-... ..+..++.++......+++|+++|+..++..|+++.+.||..|+.
T Consensus 743 i~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaad 821 (1172)
T KOG0213|consen 743 IVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAAD 821 (1172)
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHH
Confidence 87777755444433332 2223333332222 456788888888887888999999999999999999999999999
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHH
Q 001307 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1103)
Q Consensus 441 ~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~ 520 (1103)
.++.++..++..-....+..+=..|...|.. ..|+|-.....|+..++...+..-+.|-...+++.|...|.+...+++
T Consensus 822 lis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVq 900 (1172)
T KOG0213|consen 822 LISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 900 (1172)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHH
Confidence 9999998775432233455555567788887 789999999999999998887666778899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh--HhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHH
Q 001307 521 EGALTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL 598 (1103)
Q Consensus 521 ~~al~al~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l 598 (1103)
+..+..+|.++...++-. ..++......+.. |.. ....+|..|.+++|.|++++|+. +++..+++-
T Consensus 901 en~IdLvg~IadrgpE~v~aREWMRIcfeLlel-Lka----hkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnn 968 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPEYVSAREWMRICFELLEL-LKA----HKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNN 968 (1172)
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH-HHH----HHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhc
Confidence 999999999998876522 2344333333322 221 23458999999999999999954 455555541
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCcee
Q 001307 599 QGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRI 678 (1103)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 678 (1103)
... . +...|....-+++-+++.+ .|| .++|.+++-... |+.
T Consensus 969 Lkv--q-eRq~RvcTtvaIaIVaE~c----~pF--tVLPalmneYrt-Pe~----------------------------- 1009 (1172)
T KOG0213|consen 969 LKV--Q-ERQNRVCTTVAIAIVAETC----GPF--TVLPALMNEYRT-PEA----------------------------- 1009 (1172)
T ss_pred chH--H-HHHhchhhhhhhhhhhhhc----Cch--hhhHHHHhhccC-chh-----------------------------
Confidence 110 0 1112222222444444444 444 677887765432 211
Q ss_pred eeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCH
Q 001307 679 GIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNE 758 (1103)
Q Consensus 679 ~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~ 758 (1103)
.|.++. +++++-+....|+.=..|+-.+.+.+...+.+ .+..-|+.|+.++.++.-.+ .+..+.
T Consensus 1010 nVQnGV-------Lkalsf~FeyigemskdYiyav~PlleDAlmD-rD~vhRqta~~~I~Hl~Lg~--------~g~g~e 1073 (1172)
T KOG0213|consen 1010 NVQNGV-------LKALSFMFEYIGEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVIKHLALGV--------PGTGCE 1073 (1172)
T ss_pred HHHHhH-------HHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHHHHHhcCC--------CCcCcH
Confidence 122333 34566666666665556676666666665554 36777999998888876432 223356
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001307 759 SYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1103)
Q Consensus 759 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1103)
+.+..+++.+.|.++ |+.+.+...+.+++..+-..+|+
T Consensus 1074 da~iHLLN~iWpNIl-----e~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNIL-----ETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHHHHHHhhhhhc-----CCChHHHHHHHHHHHHHHHHhch
Confidence 667778888887665 35677777777777666666665
No 18
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=2.1e-17 Score=192.23 Aligned_cols=470 Identities=17% Similarity=0.224 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch--HHHHHhHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHHHHHhhh
Q 001307 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEAE-SLEEGTRHLAIEFVITLAEARE 306 (1103)
Q Consensus 230 p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~~~~~-~~~~~~r~~a~~~l~~l~~~~~ 306 (1103)
..+.+.+...+.++++..|++++--|..++...+ +...-+.++|...+...+.+. +...++...++...+.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 3566777788889999999998877777766543 122334455555555555432 12223333444444444331
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC-Ccc--ccCC-Cc-hhhHHHHHHHHHHHcCCCcchHHHHHH
Q 001307 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE-DED--AGES-SN-YSVGQECLDRLAIALGGNTIVPVASEQ 381 (1103)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e-~ed--~~~~-~~-~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1103)
+.-+.++..++..+....-...--.++.+ .++ -+.+ +. .-...+-|..|+..+|..+++..+++.
T Consensus 895 ----------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~L 964 (1702)
T KOG0915|consen 895 ----------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQL 964 (1702)
T ss_pred ----------hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHH
Confidence 12234444444444322100000000000 000 0000 00 112345677888888865554433332
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~i 461 (1103)
.-.+..|..|.+|.+.++.+++..++.+.+|+++++|.+.++--||++.||.+.....+.+..+-+.-+ +.|+.+|
T Consensus 965 ---Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~neI 1040 (1702)
T KOG0915|consen 965 ---ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYLNEI 1040 (1702)
T ss_pred ---hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHHHHH
Confidence 223567999999999999999999999999999999999999999999999999999998887755545 8999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH---HHHHHHHHHhhhh--
Q 001307 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA---LTALASVADSSQE-- 536 (1103)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~a---l~al~~l~~~~~~-- 536 (1103)
+..|+..+.+ ..++||+++|.||..++.+-+.+.+...++.++..++...++-...||+.+ ..+++.++-.+.+
T Consensus 1041 l~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1041 LDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 9999999999 899999999999999999987777778899999999999998888888775 4555555544333
Q ss_pred ---hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001307 537 ---HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1103)
Q Consensus 537 ---~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1103)
.-...++.++|+|..-= .-.....+|.-++.++..++...| ..+.||.+++++.+++..+. ++ ..+-.|+
T Consensus 1120 ~~~~~~~~l~~iLPfLl~~g---ims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~-lE--~~vLnYl 1192 (1702)
T KOG0915|consen 1120 NGAKGKEALDIILPFLLDEG---IMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSE-LE--PQVLNYL 1192 (1702)
T ss_pred CcccHHHHHHHHHHHHhccC---cccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccc-cc--hHHHHHH
Confidence 22357777888876521 112345688889999999999999 57999999999999885542 11 0111111
Q ss_pred -HHH-------H--------------HHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchh
Q 001307 614 -LQA-------W--------------ARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1103)
Q Consensus 614 -~~~-------~--------------~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 671 (1103)
.++ + ..+-.++.--=..-+..++|.+.+.+...
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s------------------------- 1247 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS------------------------- 1247 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-------------------------
Confidence 000 0 00000000000011333444444443210
Q ss_pred hcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001307 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1103)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g 751 (1103)
.+ +-.|..+...+..++..+|..+.||..+++..+++.+++ +++.+|++-+.++++|+...
T Consensus 1248 ------Vg-----l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S------- 1308 (1702)
T KOG0915|consen 1248 ------VG-----LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS------- 1308 (1702)
T ss_pred ------CC-----CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC-------
Confidence 01 123566777899999999999999999999999999997 69999999999999999764
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 001307 752 LAPGRNESYVKQLSDFIIPAL 772 (1103)
Q Consensus 752 ~~~~~~~~~~~~~~~~i~~~l 772 (1103)
.+.+.+.++..++..+
T Consensus 1309 -----s~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1309 -----SPDQMQKLIETLLADL 1324 (1702)
T ss_pred -----ChHHHHHHHHHHHHHH
Confidence 4555666666655443
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.86 E-value=3.5e-16 Score=194.56 Aligned_cols=742 Identities=13% Similarity=0.106 Sum_probs=441.7
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCch---------HHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCC
Q 001307 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPD---------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS 90 (1103)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~---------~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~ 90 (1103)
.....+++.+.++ +.+.|++|...|..+.+.+++ ++++.|...|. +.++.+|..|+-.|.++-..
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~--- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKE--- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC---
Confidence 4677888888866 678899999999888775532 24677888886 45788999988777765432
Q ss_pred CccccCCHHHH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCc------chhHHHHHHhhcCCC---
Q 001307 91 FLWPRLSLHTQ-----SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVSSDS--- 156 (1103)
Q Consensus 91 ~~w~~l~~~~~-----~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w------~~ll~~l~~~~~s~~--- 156 (1103)
++.+ ......|++.|.+ .+...|..++.+|..++.....+..| +..+|.|..++++++
T Consensus 89 -------e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 89 -------EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred -------HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 2222 2333467788876 58899999999999998742111222 567889999988864
Q ss_pred HhHHHHHHHHHHHhhhhhhhhchhh-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHH
Q 001307 157 VKLQESAFLIFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (1103)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~ 235 (1103)
...++.+..+|..++..-++.-... -...++.+...+.++ ++.++..|+.++..++...++....-.-...+|.+++
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~- 238 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLK- 238 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-
Confidence 2345666788888886543321111 123677888888886 8999999999888777543211010011234555555
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCC-------cchHHHHHHHHHHHHHHHhhh
Q 001307 236 LTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEARE 306 (1103)
Q Consensus 236 l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~-------~~~~~r~~a~~~l~~l~~~~~ 306 (1103)
++.+ .++.++..+..+|..++...++.-...+. ..++.++..+..++ .....+..|+..+..++..
T Consensus 239 ---LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg-- 313 (2102)
T PLN03200 239 ---LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG-- 313 (2102)
T ss_pred ---HHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC--
Confidence 4444 45688999999999999765433222211 23444554443221 2345688899999988872
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC-c---ch-H-HHHH
Q 001307 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-T---IV-P-VASE 380 (1103)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~-~---~~-~-~l~~ 380 (1103)
. ..+++.+...+....+. .....+..++..+...+... . .+ + .+.+
T Consensus 314 -~-----------~~ll~~L~~ll~s~rd~----------------~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~ 365 (2102)
T PLN03200 314 -M-----------SALILYLGELSESPRSP----------------APIADTLGALAYALMVFDSSAESTRAFDPTVIEQ 365 (2102)
T ss_pred -c-----------hhhHHHHHHhhcccchH----------------HHHHHHHhhHHHHHHhcCCchhhhhhccccccHH
Confidence 1 23344443332111000 00011222333332222111 0 11 1 2335
Q ss_pred HHHHhhcCCChHH-HHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001307 381 QLPAYLAAPEWQK-HHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1103)
Q Consensus 381 ~l~~~l~~~~~~~-r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (1103)
.+.+++.+.++.. ...+.-+|..+..+.. ..+ +-...++.++..+...+..+|..++++|..++..-......-.
T Consensus 366 ~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L--~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 366 ILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL--NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH--HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5566676665442 4555555544332211 111 1135677788889989999999999999999976433332222
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
-...+|.|++.|.+ ++..+|..|++++.++..........-.-...++.|.+++.+++..+|+.|..+++.++.. ..+
T Consensus 444 ~~ggIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~q 521 (2102)
T PLN03200 444 GREGVQLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SED 521 (2102)
T ss_pred HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHH
Confidence 34578999999998 7889999999999999764432110001124578888899999999999999999999874 333
Q ss_pred hHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001307 538 FQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1103)
Q Consensus 538 ~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1103)
....+ ...+|.|.+.+.+. ....|..|..++..+...-..+.. ++++ .+... ++...+..++.
T Consensus 522 ir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv----~LLls---dd~~~~~~aL~ 586 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRTADAATI----SQLT----ALLLG---DLPESKVHVLD 586 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhccchhHH----HHHH----HHhcC---CChhHHHHHHH
Confidence 33333 36888888888653 235677788888888654332222 2233 32221 22346667788
Q ss_pred HHHHHHhHhcCCc-c-cc--hhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHH
Q 001307 616 AWARLCKCLGQDF-L-PY--MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATA 691 (1103)
Q Consensus 616 ~~~~l~~~~~~~~-~-p~--l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A 691 (1103)
+++++.......- . .- -...+|.|.+.+++. .-+.|..|
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-------------------------------------s~~ikk~A 629 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-------------------------------------KEETQEKA 629 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-------------------------------------CHHHHHHH
Confidence 8887766433221 0 00 124566666666431 11347778
Q ss_pred HHHHHHHHHHhhhhcccc-HHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHH
Q 001307 692 CNMLCCYADELKEGFFPW-IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS-DFII 769 (1103)
Q Consensus 692 ~~~l~~l~~~~~~~~~p~-~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~-~~i~ 769 (1103)
+.++..++...++..... ....++.++.++.. .+.++|+.++.++..+.... ...+...+. ...+
T Consensus 630 a~iLsnL~a~~~d~~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~------------~~~q~~~~v~~GaV 696 (2102)
T PLN03200 630 ASVLADIFSSRQDLCESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSI------------KENRKVSYAAEDAI 696 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCC------------CHHHHHHHHHcCCH
Confidence 889988876443321111 12334455556654 37889999999999988642 122222223 3467
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhh
Q 001307 770 PALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQ-VRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKE 848 (1103)
Q Consensus 770 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~ 848 (1103)
|.|+..+.. .+.+++..++.++..++...... .+. -...+..+..+|+.
T Consensus 697 ~pL~~LL~~-~d~~v~e~Al~ALanLl~~~e~~--~ei~~~~~I~~Lv~lLr~--------------------------- 746 (2102)
T PLN03200 697 KPLIKLAKS-SSIEVAEQAVCALANLLSDPEVA--AEALAEDIILPLTRVLRE--------------------------- 746 (2102)
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHcCchHH--HHHHhcCcHHHHHHHHHh---------------------------
Confidence 888887765 47788889999998887652110 000 01223444444443
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh-c-hhhhHHH--HHHhhhhhccCCCCH-HHHHHHHHHHHHHHhh
Q 001307 849 ENEQEEEVFDQVGEILGTLIKTFKA-A-FLPFFDE--LSSYLTPMWGKDKTA-EERRIAICIFDDVAEQ 912 (1103)
Q Consensus 849 ~~e~~~~~~~~~~~~l~~l~~~~~~-~-~~~~~~~--l~~~l~~~l~~~~~~-~~r~~a~~~l~~l~~~ 912 (1103)
.....+++++..|..+++..+. + +..+... .+..++.+|+..... .....++.+++-+.+.
T Consensus 747 ---G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 747 ---GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred ---CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 1123578899999999987762 2 2233333 455556666432222 2223467777777764
No 20
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2e-14 Score=159.44 Aligned_cols=603 Identities=17% Similarity=0.227 Sum_probs=375.3
Q ss_pred ChHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~-d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
+.+.+++++..++++ +.+....++++|...+. -|.+| ..-.++++.+..+++|.++|+.|...+..+ |...++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~ 78 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPA 78 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCCh
Confidence 457788999999988 55667777888988877 46665 556677777888999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC-H----hH-HHHHHHHHHHh
Q 001307 99 HTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-V----KL-QESAFLIFAQL 170 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e--~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~-~----~~-r~~al~~l~~l 170 (1103)
+..++++.+++..+... ....|-++++-+++.++-+..+ +.||.-+..++++++... + .. ...-+..|..+
T Consensus 79 ~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 79 NEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 99999999999988652 3445777788888888777666 799999888888876532 1 22 23334445444
Q ss_pred hhhhh-------------hhchhhHHHHHHHHHHhhCCCC---Ch----HHHHHHHHHHHHHHHhcCCcc--h-------
Q 001307 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSN---NP----DVKIAALNAVINFIQCLTSSA--D------- 221 (1103)
Q Consensus 171 ~~~~~-------------~~l~~~~~~l~~~l~~~l~~~~---~~----~vr~~a~~~l~~l~~~~~~~~--~------- 221 (1103)
+.+.. .++.......++++...++... .. ..+..+++|+..++.++.-+. .
T Consensus 158 p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~l 237 (982)
T KOG2022|consen 158 PAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVL 237 (982)
T ss_pred cHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 43321 1122334445555555555431 12 456788899888877432110 0
Q ss_pred ----------------------------------------------HhHHHhhHHHHHHHHHHH------HhCCC--HHH
Q 001307 222 ----------------------------------------------RDRFQDLLPLMMRTLTES------LNNGN--EAT 247 (1103)
Q Consensus 222 ----------------------------------------------~~~~~~~ip~ll~~l~~~------l~~~~--~~~ 247 (1103)
.+....+++.++..+... ..+++ .+.
T Consensus 238 l~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~ 317 (982)
T KOG2022|consen 238 LDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEE 317 (982)
T ss_pred HHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHH
Confidence 000011122111111111 11122 223
Q ss_pred HHHHHHHHHHHHccchHHHHHh---------HHHHHHHHHHhhcCC---CcchHHHHHHHHHHHHHHHhhh------ccc
Q 001307 248 AQEALELLIELAGTEPRFLRRQ---------LVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARE------RAP 309 (1103)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~~---------~~~l~~~l~~~~~~~---~~~~~~r~~a~~~l~~l~~~~~------~~~ 309 (1103)
....+......++++...+..+ +..++..++.+.+.+ -.++.+...++.+|.++.+... ..+
T Consensus 318 i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~ 397 (982)
T KOG2022|consen 318 IVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQI 397 (982)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCc
Confidence 3333444444444443333222 223444444443332 2456677888999999876411 111
Q ss_pred hhhhcch-hhHHHHHHHHHHhhcCCCCCc--ccccCCCCCccccCCCchh-hHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 001307 310 GMMRKLP-QFINRLFAILMSMLLDIEDDP--LWHSAETEDEDAGESSNYS-VGQECLDRLAIALGGNTIVPVASEQLPAY 385 (1103)
Q Consensus 310 ~~~~~~~-~~~~~l~~~l~~~l~~~~~~~--~w~~~~~e~ed~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 385 (1103)
. ...+. +...+++..++..+.-+.++. .|..++ .+....|+ ...+.+...-..+| +.++..+...+.++
T Consensus 398 ~-~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s-----~e~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~ 470 (982)
T KOG2022|consen 398 K-KQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDS-----REQFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQA 470 (982)
T ss_pred c-hhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcch-----HHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHh
Confidence 0 00111 455566777777666554321 344322 11222232 23344555555566 77888888888888
Q ss_pred hcCCC-----hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001307 386 LAAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1103)
Q Consensus 386 l~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (1103)
+.+.+ |..-++.+..+..+++..++...+.++.++...... +.-.+|..-..+...+|.++.+++.+- .|++
T Consensus 471 ~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln 548 (982)
T KOG2022|consen 471 LAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLN 548 (982)
T ss_pred hhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccC
Confidence 87665 999999999999999988876667777777655432 334588999999999999999998764 6899
Q ss_pred hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhh-h
Q 001307 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ-E 536 (1103)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~--~~v~~~al~al~~l~~~~~-~ 536 (1103)
..+|.|++++.. ++.-..+...+..+|+.|+.+ +.||.+.++..+-..+...+ ...|..++.+||.+..... +
T Consensus 549 ~sl~~L~~~Lh~---sk~s~q~i~tl~tlC~~C~~~-L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pE 624 (982)
T KOG2022|consen 549 PSLPLLFQGLHN---SKESEQAISTLKTLCETCPES-LDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPE 624 (982)
T ss_pred chHHHHHHHhcC---chHHHHHHHHHHHHHHhhhhh-CchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHH
Confidence 999999999976 344466777899999999965 88999999998888877653 6789999999999987765 4
Q ss_pred hhHhhHhhhhHHHHHHHhhcC----CcccchhhhH-HHHHHHHHHHhhCh--------------h-----hhhhhHHHHH
Q 001307 537 HFQKYYDAVMPFLKAILVNAT----DKSNRMLRAK-SMECISLVGMAVGK--------------D-----KFRDDAKQVM 592 (1103)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~----~~~~~~lr~~-a~~~l~~i~~~~~~--------------~-----~~~~~~~~i~ 592 (1103)
...+|+..++..+..-++..- +.....+|.. -+.|++.+..++-. + .......++|
T Consensus 625 e~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i 704 (982)
T KOG2022|consen 625 EIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAI 704 (982)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHH
Confidence 566788888877777666531 1111222221 23455555544320 0 1122344556
Q ss_pred HHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCc-ccchhhhhHHHHHhc
Q 001307 593 EVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF-LPYMSVVMPPLLQSA 643 (1103)
Q Consensus 593 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~l~~i~~~ll~~~ 643 (1103)
+++-++.+.....++ +.+.....+..=.+..+++| .|++|.+.+.+.+..
T Consensus 705 ~~~~kv~s~~~~~s~-vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 705 PVFEKVLSMWLGLSD-VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred HHHHHHHHHHhcchh-HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 655553332222222 23333223322244456678 899999999888743
No 21
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7e-16 Score=167.06 Aligned_cols=601 Identities=14% Similarity=0.157 Sum_probs=343.1
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 23 PFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 23 ~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
.+++++.++..| |...|+||.+++++++. .|++| ....+++.. ..++.+|..+...|...++.. +..++..
T Consensus 4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl~ 77 (980)
T KOG2021|consen 4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANLN 77 (980)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCHH
Confidence 677888887765 88999999999999999 68876 667777765 478999999999998888763 4458888
Q ss_pred HHHHHHHHHHHHHhhc--------chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCH-hHHHHHHHHHHHh
Q 001307 100 TQSSLKSMLLQSIQLE--------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQL 170 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e--------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~~l 170 (1103)
.+..+|..+.+.+.-+ -.+-++++++++++.+.-.++| ..|+.++..++..++-+.. .--..-++++-.+
T Consensus 78 elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaI 156 (980)
T KOG2021|consen 78 ELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAI 156 (980)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHHh
Confidence 9999999998877531 2556999999999999999998 7899988877766543221 1111122222222
Q ss_pred hhhhhh------------------hch-----hhHHHHHHHHHHhhCCC-------------------------------
Q 001307 171 SQYIGD------------------TLT-----PHLKHLHAVFLNCLTNS------------------------------- 196 (1103)
Q Consensus 171 ~~~~~~------------------~l~-----~~~~~l~~~l~~~l~~~------------------------------- 196 (1103)
-+++.+ .++ ...+...+++...=+..
T Consensus 157 dsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~n 236 (980)
T KOG2021|consen 157 DSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLN 236 (980)
T ss_pred hhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHH
Confidence 211110 000 01112222222222222
Q ss_pred ------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHH--HhCCCHHHHHHHHHHHH-----------H
Q 001307 197 ------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES--LNNGNEATAQEALELLI-----------E 257 (1103)
Q Consensus 197 ------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~--l~~~~~~~~~~~~~~l~-----------~ 257 (1103)
...++|.+|+.|+..++..--++.+.-.+-..+...++...-. -+..|++.-...-..+. .
T Consensus 237 LLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~ 316 (980)
T KOG2021|consen 237 LLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQ 316 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhh
Confidence 0235666666666666543111111111111111111111110 01123333222222222 1
Q ss_pred HHccch----HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCC
Q 001307 258 LAGTEP----RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDI 333 (1103)
Q Consensus 258 l~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (1103)
+..... .-....+..+++.+++.+.+ .++++....+.+|......-++.+..-.....++.+++...++.+++.
T Consensus 317 lnseld~~~kqn~l~~ll~~vpyllq~l~~--e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicyd 394 (980)
T KOG2021|consen 317 LNSELDTLYKQNVLSILLEIVPYLLQFLNN--EFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYD 394 (980)
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhcc
Confidence 111111 11222344577888887754 345666666777765544321222221222346778888888877764
Q ss_pred CCCcccccCCCCCccccCCCch-hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc---CCChHHHHHHHHHHHHHHhhcH
Q 001307 334 EDDPLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIALAQIAEGCA 409 (1103)
Q Consensus 334 ~~~~~w~~~~~e~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~aal~~l~~l~~~~~ 409 (1103)
+. ..|+...+.+|+++....+ +-....+++++..- ++.+...+-+.+...+. ..+|..-+.|+..+..++|+.+
T Consensus 395 em-y~nddn~tg~EeEa~f~e~RkkLk~fqdti~~id-psl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~ 472 (980)
T KOG2021|consen 395 EM-YFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVID-PSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLK 472 (980)
T ss_pred HH-hhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccc
Confidence 32 1232221112222222222 22222334444332 34555555555554443 3469999999999999998866
Q ss_pred HHHH----------HhHHHHHHHHHh--cCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh--hccCCCCc
Q 001307 410 KVMV----------KNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG--AMDDFQNP 475 (1103)
Q Consensus 410 ~~~~----------~~l~~i~~~l~~--~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~--~l~~~~~~ 475 (1103)
.... ..+..+++.+.. ....+|+.|+-.-+..+-++...+..+ ..+++-++..++. ++.+ ++.
T Consensus 473 ~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~rglhn-~ne 549 (980)
T KOG2021|consen 473 NNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDSRGLHN-KNE 549 (980)
T ss_pred cccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccchhccc-ccc
Confidence 4111 123344555443 346789999988888888888777554 3566677776653 5666 788
Q ss_pred chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC------------ChhHHHHHHHHHHHHHHh---hhhhhHh
Q 001307 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG------------KQMVQEGALTALASVADS---SQEHFQK 540 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~------------~~~v~~~al~al~~l~~~---~~~~~~~ 540 (1103)
.||.+|.+.+.+|+..+.+. +.||.+.++..+-.++... ...-+...++++|.++.. ..+.-..
T Consensus 550 ~Vr~RawYLF~RfVKlLkkq-lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaa 628 (980)
T KOG2021|consen 550 NVRLRAWYLFTRFVKLLKKQ-LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAA 628 (980)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHH
Confidence 99999999999999998866 6799999999998888322 112233455666665532 1222334
Q ss_pred hHhhhhHHHH---------HHHhhcCCcccchh----hhHHHHHHHHHHHhhChhhh--------hhhHHHHHHHHHHHh
Q 001307 541 YYDAVMPFLK---------AILVNATDKSNRML----RAKSMECISLVGMAVGKDKF--------RDDAKQVMEVLMSLQ 599 (1103)
Q Consensus 541 ~~~~i~~~l~---------~~l~~~~~~~~~~l----r~~a~~~l~~i~~~~~~~~~--------~~~~~~i~~~l~~l~ 599 (1103)
|.+.++.++. ..+. ++ +.... .-.++-++|.+++... .+. .-...++.+.++...
T Consensus 629 y~~~litpl~~~~~igl~~a~la--sd-e~~pv~Ia~c~~~lmaig~lakgf~-~rlvt~~qvg~~~vf~~~ldvil~~l 704 (980)
T KOG2021|consen 629 YANTLITPLILDQIIGLLFAQLA--SD-EASPVVIAECHHILMAIGTLAKGFH-IRLVTENQVGNMVVFSNILDVILVTL 704 (980)
T ss_pred HHhcccChHHHHHHHHHHHHHHh--cc-ccccHHHHHHHHHHHHHHHHhhccc-ccCcchhcccHHHHHHHHHHHHHHHH
Confidence 5555443222 2222 12 11111 1123445556655433 111 011233344444322
Q ss_pred cCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhc
Q 001307 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~ 643 (1103)
. .+...+++|+.+-.+++++..++|+++-||+|.+++.+++..
T Consensus 705 s-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 705 S-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred h-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 2 222346789999999999999999999999999999998876
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=2e-16 Score=167.01 Aligned_cols=725 Identities=15% Similarity=0.142 Sum_probs=436.2
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 277 (1103)
....|..+++.|..=...+. ....|..++|.+++.- + +...+...+..+..+.........+|+..++-..
T Consensus 181 ~~~mR~~~lRiLtdkav~fg---~~~vfnkvLp~lm~r~---L---eDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv 251 (975)
T COG5181 181 GKRMRMEGLRILTDKAVNFG---AAAVFNKVLPMLMSRE---L---EDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVV 251 (975)
T ss_pred CchhhHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh---h---hhhhhHhHHHHHHHHHHhcccccccceeeEEEEe
Confidence 67888899888876555432 2234555566555431 2 3344566666666666554444455554433211
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh
Q 001307 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1103)
Q Consensus 278 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~ 357 (1103)
-.++ -+.+...|...-+++..++.. .. +...+ ..| .++.. . .+.-.+++
T Consensus 252 ~pll--ided~~~r~~g~eii~nL~~~---~G-----l~~~v--------s~m-----rpDi~-----~---~deYVRnv 300 (975)
T COG5181 252 GPLL--IDEDLKRRCMGREIILNLVYR---CG-----LGFSV--------SSM-----RPDIT-----S---KDEYVRNV 300 (975)
T ss_pred eccc--cCccHHHhcccHHHHHHHHHH---hc-----cceee--------eec-----cCCcc-----c---ccHHHHHH
Confidence 1111 123444555555666666552 10 00000 001 00000 0 01124556
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHH
Q 001307 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRW 436 (1103)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 436 (1103)
...+.+.++.++| .+.++|++.....|. +|+.|+.++.+..++++-.+....+|+..++..+-.++.|.+..||-
T Consensus 301 t~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi 376 (975)
T COG5181 301 TGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRI 376 (975)
T ss_pred HHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeee
Confidence 6778888898888 456677777777765 89999999999999999888788899999999999999999999999
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC
Q 001307 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1103)
Q Consensus 437 ~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~ 516 (1103)
.++.+++.+++..+|.- ...++.++..|-+..+. ....+-..-..|.+.++.-+.++...-+-...+..++..+++++
T Consensus 377 ~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spd 454 (975)
T COG5181 377 DTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPD 454 (975)
T ss_pred hhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCch
Confidence 99999999999887754 45677888888777765 33333344455555555555666555566788999999999998
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 001307 517 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1103)
Q Consensus 517 ~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~ 596 (1103)
.+.+...+.........-+..-..|.+++.|.+++.+.......++..-.+...+-..+++..|. +.+..-++
T Consensus 455 eemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~-------~~v~~kil 527 (975)
T COG5181 455 EEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD-------PRVSRKIL 527 (975)
T ss_pred hhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC-------hHHHHHHH
Confidence 88777666655555444333344567888888887655421111121112223445556666662 22333333
Q ss_pred HHhcCCCCCCCchhhHHHHHHHHHHhHhcC-Ccccchh-hhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcC
Q 001307 597 SLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYMS-VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1103)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~l~-~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 674 (1103)
+... +..+|.|.....+..++...+|. +|..-+. .++..++..++.+.. .+..
T Consensus 528 ~~~~---De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~----------------t~~~------ 582 (975)
T COG5181 528 EYYS---DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT----------------TVGL------ 582 (975)
T ss_pred hhcc---CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc----------------cccE------
Confidence 3222 23456777777777787777764 3544333 355555655543210 0000
Q ss_pred CceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Q 001307 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAP 754 (1103)
Q Consensus 675 ~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~ 754 (1103)
. +.+++....+++-...||+..++..+++.+... .+++|..|+.+++.|...++.+.
T Consensus 583 --i--------------l~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~------ 639 (975)
T COG5181 583 --I--------------LPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACG------ 639 (975)
T ss_pred --E--------------EecccceeeehhhccCcchHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcc------
Confidence 0 012333333444556789999999999999865 78999999999999988775431
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 001307 755 GRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAK 834 (1103)
Q Consensus 755 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 834 (1103)
.. ..+..+=..|.+.+. +.++++...++.++..+....+-.-.++-+..+++.+...|.+..
T Consensus 640 ---e~---~~l~klg~iLyE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh----------- 701 (975)
T COG5181 640 ---ET---KELAKLGNILYENLG-EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKH----------- 701 (975)
T ss_pred ---hH---HHHHHHhHHHHHhcC-cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhh-----------
Confidence 11 122222223445544 448899999999998888776643222345667777777776633
Q ss_pred CCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhh-hHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhh
Q 001307 835 AEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQC 913 (1103)
Q Consensus 835 ~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~ 913 (1103)
+.+..+..+++|.++...++...+ -+-.|.=-+++.|+ +-+.+.|..|..+||.+.+..
T Consensus 702 -------------------~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 702 -------------------QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred -------------------HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhhhHHhhc
Confidence 235566888999999887664321 22234444455553 345678899999999999998
Q ss_pred hhhhhhhHHhHHHHHHH-----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHH
Q 001307 914 REAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSA 982 (1103)
Q Consensus 914 ~~~~~~~~~~~l~~l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a 982 (1103)
|+. .++..+++ ..+-|+|+.++.+|.. .+++.|.+--..| +..+...+..|
T Consensus 762 GPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP------e~nVQnGvLka 823 (975)
T COG5181 762 GPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP------EANVQNGVLKA 823 (975)
T ss_pred CHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc------hhHHHHhHHHH
Confidence 875 56666665 4556889999988741 3445555544555 45677777889
Q ss_pred HHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhH---HHHHH-HHHhcCC
Q 001307 983 LGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPK---IVSVF-AEILCGK 1056 (1103)
Q Consensus 983 l~~l~~~~~~~~--~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---i~~~~-~~~l~~~ 1056 (1103)
++-+..+-++.. .+-.+.|.+=+.|-- .|..-.+.+...+-.++- +.+. .+ +..- +++++ .++|.
T Consensus 824 m~fmFeyig~~s~dYvy~itPlleDAltD-rD~vhRqta~nvI~Hl~L-nc~g-tg----~eda~IHLlNllwpNIle-- 894 (975)
T COG5181 824 MCFMFEYIGQASLDYVYSITPLLEDALTD-RDPVHRQTAMNVIRHLVL-NCPG-TG----DEDAAIHLLNLLWPNILE-- 894 (975)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhcc-cchHHHHHHHHHHHHHhc-CCCC-cc----cHHHHHHHHHHhhhhccC--
Confidence 888888766532 122344544444421 232222222223333332 2221 12 2222 22221 23332
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCC-hhhHHHHHhcC
Q 001307 1057 DLATEQTLSRIVNLLKQLQQTLP-PATLASTWSSL 1090 (1103)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~l 1090 (1103)
..+-+.+++.+.+.++.+..+ +..+.=+|+.|
T Consensus 895 --~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGL 927 (975)
T COG5181 895 --PSPHVIQSFDEGMESFATVLGSGAMMKYVQQGL 927 (975)
T ss_pred --CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 245677888888888777755 55566666655
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=3.5e-14 Score=177.12 Aligned_cols=680 Identities=15% Similarity=0.180 Sum_probs=396.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCC-CCccc
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD-SFLWP 94 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~-~~~w~ 94 (1103)
+..++.-+.+++...|..|-..|..+.. ++ .+.++.|+.+|.++ +++.|..|+-.|..+..... ...|.
T Consensus 60 IP~LV~lL~sg~~~vk~nAaaaL~nLS~-~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 60 MPLLVSLLRSGTLGAKVNAAAVLGVLCK-EEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 3445556667888888887766666554 22 23467889999754 79999999999988765420 11121
Q ss_pred cCCHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhcccCCCCcch-----hHHHHHHhhcCCCHhHHHHHHHHH
Q 001307 95 RLSLHTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPE-----LLPFMFQCVSSDSVKLQESAFLIF 167 (1103)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e--~~~~vr~~~~~~i~~ia~~~~~~~~w~~-----ll~~l~~~~~s~~~~~r~~al~~l 167 (1103)
.+- ........|+..+.+. .+..++..++.++..++.+ +.+.|.. .+|.+.++++++++..+..|..++
T Consensus 138 ~I~--v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~--~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aL 213 (2102)
T PLN03200 138 KIF--STEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS--TDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLL 213 (2102)
T ss_pred hhh--hhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC--ccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 110 1133445677777752 2344667777788888774 3356644 689999999999999999999988
Q ss_pred HHhhhhhhhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHH----H
Q 001307 168 AQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTES----L 240 (1103)
Q Consensus 168 ~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~ip~ll~~l~~~----l 240 (1103)
..++...++.... .-...+|.+.+.+.+..+..+|..|+.+|.++...- ....... .+-+|.+++.+... +
T Consensus 214 a~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~ 291 (2102)
T PLN03200 214 ARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFM 291 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhh
Confidence 8787654432111 112457888888876436799999999999988631 1111111 23466666655421 0
Q ss_pred hC-CCHHHHHHHHHHHHHHHccchHHHHHhHHHH----------------HHHHHHhhcCCCcchHHHH----HHHHHHH
Q 001307 241 NN-GNEATAQEALELLIELAGTEPRFLRRQLVDV----------------VGSMLQIAEAESLEEGTRH----LAIEFVI 299 (1103)
Q Consensus 241 ~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l----------------~~~l~~~~~~~~~~~~~r~----~a~~~l~ 299 (1103)
+. .+...+..+..+|..++...+. +.+++..+ +..++...+. .++.++. .+...+.
T Consensus 292 ~~~~~~~Lqe~AvwALsNIcgg~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~--~~~~~~~i~~~~v~~~LV 368 (2102)
T PLN03200 292 QGEFAQALQENAMGALANICGGMSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDS--SAESTRAFDPTVIEQILV 368 (2102)
T ss_pred ccccchHHHHHHHHHHHHHhCCchh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCC--chhhhhhccccccHHHHH
Confidence 11 1234577889999998875533 22222111 2222232322 1222221 2345667
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHH---------hhcCCCCCc---ccccCCCCCccccCCCchhhHHHHHHHHHH
Q 001307 300 TLAEARERAPGMMRKLPQFINRLFAILMS---------MLLDIEDDP---LWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1103)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---------~l~~~~~~~---~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~ 367 (1103)
.+++.+. |.. ..+.+.+.+.. .+.+.+-.+ .+-... .......+..++..++.
T Consensus 369 ~Llr~k~--p~~------vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~-------~~evQ~~Av~aL~~L~~ 433 (2102)
T PLN03200 369 KLLKPRD--TKL------VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMA-------TADVQEELIRALSSLCC 433 (2102)
T ss_pred HHhCCCC--Cch------hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccC-------CHHHHHHHHHHHHHHhC
Confidence 7776421 211 11222333211 111100000 000000 01123345556555552
Q ss_pred HcCC--Ccch-HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHH
Q 001307 368 ALGG--NTIV-PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIG 443 (1103)
Q Consensus 368 ~~~~--~~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~ 443 (1103)
.-.. +.+. ...+|.+.+++.+++...+..|+..++.++.+..+....... ..+|.+.+.|.++++.+|..|+|+|+
T Consensus 434 ~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~ 513 (2102)
T PLN03200 434 GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLW 513 (2102)
T ss_pred CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2100 0000 113466667788888899999999999998876653332222 57888899999999999999999999
Q ss_pred HhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001307 444 QLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1103)
Q Consensus 444 ~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~ 522 (1103)
+++.+ .+.++... ....+|.|++.|++ ++++++..|+++|.+++.....+ .++.+..++.+.++.++..
T Consensus 514 NLa~~-~~qir~iV~~aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~--------~I~~Lv~LLlsdd~~~~~~ 583 (2102)
T PLN03200 514 NLCCH-SEDIRACVESAGAVPALLWLLKN-GGPKGQEIAAKTLTKLVRTADAA--------TISQLTALLLGDLPESKVH 583 (2102)
T ss_pred HHhCC-cHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhccchh--------HHHHHHHHhcCCChhHHHH
Confidence 99974 33332222 23789999999998 88999999999999998765433 2355667788888899999
Q ss_pred HHHHHHHHHHhhhhh-hH-hh--HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhh-hHHHHHHHHHH
Q 001307 523 ALTALASVADSSQEH-FQ-KY--YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD-DAKQVMEVLMS 597 (1103)
Q Consensus 523 al~al~~l~~~~~~~-~~-~~--~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~-~~~~i~~~l~~ 597 (1103)
++.+++.+....... +. .- -...+|.|.+++.+. ....|..|..+++.+...-. +.... .....++.++.
T Consensus 584 aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg----s~~ikk~Aa~iLsnL~a~~~-d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 584 VLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS----KEETQEKAASVLADIFSSRQ-DLCESLATDEIINPCIK 658 (2102)
T ss_pred HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHH
Confidence 999999987654432 11 11 235788888888653 34568888889888875221 11111 11223444444
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhHhcCC-cccchh-hhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCC
Q 001307 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQD-FLPYMS-VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGD 675 (1103)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~p~l~-~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 675 (1103)
+... .+..++..+..+++++......+ ...++. .++|.|++.+... +
T Consensus 659 LLss---~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~------------------d---------- 707 (2102)
T PLN03200 659 LLTN---NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS------------------S---------- 707 (2102)
T ss_pred HHhc---CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC------------------C----------
Confidence 3332 23446666777888888643322 122233 3788888888431 0
Q ss_pred ceeeeechhHHHHHHHHHHHHHHHHHhhhh--ccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCC
Q 001307 676 KRIGIKTSVLEEKATACNMLCCYADELKEG--FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLA 753 (1103)
Q Consensus 676 ~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~--~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~ 753 (1103)
.+.+..|+.+|..++...... +. -...++.+..++.. -++..|+.|+.++..|+.....
T Consensus 708 ---------~~v~e~Al~ALanLl~~~e~~~ei~--~~~~I~~Lv~lLr~-G~~~~k~~Aa~AL~~L~~~~~~------- 768 (2102)
T PLN03200 708 ---------IEVAEQAVCALANLLSDPEVAAEAL--AEDIILPLTRVLRE-GTLEGKRNAARALAQLLKHFPV------- 768 (2102)
T ss_pred ---------hHHHHHHHHHHHHHHcCchHHHHHH--hcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhCCCh-------
Confidence 112455677777777653221 11 12334555556654 3789999999999988865311
Q ss_pred CCCCHHHHHHHH--HHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHHH
Q 001307 754 PGRNESYVKQLS--DFIIPALVEALHKE-PDTEICASMLDSLNECIQI 798 (1103)
Q Consensus 754 ~~~~~~~~~~~~--~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~ 798 (1103)
.+.+.... ...+..|+..+... .+.....++++.+..+.+.
T Consensus 769 ----~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 769 ----DDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred ----hHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 11111111 12344555555433 3333444678888777764
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.82 E-value=9.4e-15 Score=154.63 Aligned_cols=691 Identities=15% Similarity=0.208 Sum_probs=405.9
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCC--CCccc
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD--SFLWP 94 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~-~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~--~~~w~ 94 (1103)
-|...+..+|..+.+++..-|+.+-..|..-.. .-|......++.++-+ +-+..-|++-.-++.+++..-+ ..-|.
T Consensus 165 ~~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyv 244 (975)
T COG5181 165 GDERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYV 244 (975)
T ss_pred cchHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccce
Confidence 455677788888888888999999888865332 1233334444444443 5566778887777766665421 00010
Q ss_pred ----------cCCHHHH-----HHHHHHHHHH--Hh----------hcchhhHHHHHHHHHHHHHhcccCCCCcchhHHH
Q 001307 95 ----------RLSLHTQ-----SSLKSMLLQS--IQ----------LESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1103)
Q Consensus 95 ----------~l~~~~~-----~~ik~~ll~~--l~----------~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~ 147 (1103)
.++++.+ .+|...|... |. ...++-||+..+.+++.++++. ..++++|+
T Consensus 245 hkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpf 320 (975)
T COG5181 245 HKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPF 320 (975)
T ss_pred eeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHH
Confidence 0122211 1122222211 11 0157789999999999999974 67999999
Q ss_pred HHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHH
Q 001307 148 MFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (1103)
Q Consensus 148 l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 226 (1103)
|...+.|- +|..|+.++++...++...+-...+|+..++..+..++.|. +..||..+..+++.+++.. .+...+.|.
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~-~~~vRi~tA~alS~lae~~-~Pygie~fd 398 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR-SRFVRIDTANALSYLAELV-GPYGIEQFD 398 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc-ceeeeehhHhHHHHHHHhc-CCcchHHHH
Confidence 99999887 88999999999999999998888889999999999999997 8999999999999888754 222233333
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhh
Q 001307 227 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR 305 (1103)
Q Consensus 227 ~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 305 (1103)
.++..|.+-.++....+...-+++.+.++-. .|++...+..+..+.++..+..+ +++.+...+-+...+.+..
T Consensus 399 ----~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp--deemkk~~l~v~~~C~~v~ 472 (975)
T COG5181 399 ----EVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP--DEEMKKDLLVVERICDKVG 472 (975)
T ss_pred ----HHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc--hhhcchhHHHHHHHHhccC
Confidence 4455555444332222222233333222211 23333333344445555544332 3333322222222222211
Q ss_pred hccchhhhcchhhHHHHHHHHHHhhcC--C-CCCcccc------------cCC-C-----CCccccCCCch-hhHHHHHH
Q 001307 306 ERAPGMMRKLPQFINRLFAILMSMLLD--I-EDDPLWH------------SAE-T-----EDEDAGESSNY-SVGQECLD 363 (1103)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~w~------------~~~-~-----e~ed~~~~~~~-~~a~~~l~ 363 (1103)
...|.. +-.++.|.++...-. . .|...+- ..+ . -+.-.|+..++ +.+..+.+
T Consensus 473 ~~tp~~------lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 473 TDTPWK------LRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred CCCHHH------HHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 111111 111222222211000 0 0000000 000 0 00000122233 45666677
Q ss_pred HHHHHcCCCcchHHHHH----HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHH
Q 001307 364 RLAIALGGNTIVPVASE----QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1103)
Q Consensus 364 ~l~~~~~~~~~~~~l~~----~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1103)
+....+|...+-..+.. .+...++.++-... ..+-+++.+.....-..+++++.++..++..|+++.|.||..|+
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aa 625 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAA 625 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHH
Confidence 77766664333332222 22222222221111 11222333322222244689999999999999999999999999
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhH
Q 001307 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMV 519 (1103)
Q Consensus 440 ~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v 519 (1103)
...|.++..++..-....+..+=..|...+.. ..|+|-.....|+..+....+-..++|-...+++.|...+.+...++
T Consensus 626 dl~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv 704 (975)
T COG5181 626 DLMGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKV 704 (975)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHH
Confidence 99999888765322134455666677888887 78899888899999888887767788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh--HhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH
Q 001307 520 QEGALTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1103)
Q Consensus 520 ~~~al~al~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 597 (1103)
....+..+|.++...++.. ..++......+-. |.. ....+|..|-+++|.|++++|+. +++..+++
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~-Lks----~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~Lln 772 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRICFELVDS-LKS----WNKEIRRNATETFGCISRAIGPQ-------DVLDILLN 772 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH-HHH----hhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHh
Confidence 9999999999998776532 2333333333222 221 13458999999999999999954 45555554
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCce
Q 001307 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1103)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 677 (1103)
-... .+...|....-+++-+++.+| || .++|.+++-... |+.
T Consensus 773 nLkv---qeRq~RvctsvaI~iVae~cg----pf--sVlP~lm~dY~T-Pe~---------------------------- 814 (975)
T COG5181 773 NLKV---QERQQRVCTSVAISIVAEYCG----PF--SVLPTLMSDYET-PEA---------------------------- 814 (975)
T ss_pred cchH---HHHHhhhhhhhhhhhhHhhcC----ch--hhHHHHHhcccC-chh----------------------------
Confidence 1110 011223233335555655555 44 577777664422 111
Q ss_pred eeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCC
Q 001307 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRN 757 (1103)
Q Consensus 678 ~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~ 757 (1103)
.|.++ -+++++-+....|..=..|+-.+.+.+-..+.+ .+..-|+.|.+.+.+|.-.+. +...
T Consensus 815 -nVQnG-------vLkam~fmFeyig~~s~dYvy~itPlleDAltD-rD~vhRqta~nvI~Hl~Lnc~--------gtg~ 877 (975)
T COG5181 815 -NVQNG-------VLKAMCFMFEYIGQASLDYVYSITPLLEDALTD-RDPVHRQTAMNVIRHLVLNCP--------GTGD 877 (975)
T ss_pred -HHHHh-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc-cchHHHHHHHHHHHHHhcCCC--------Cccc
Confidence 12222 244667777777777677777777777666665 377889999999888875431 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001307 758 ESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1103)
Q Consensus 758 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1103)
.+..-.+++.++|.++ |+.+.+...+.+++..+-..+|+
T Consensus 878 eda~IHLlNllwpNIl-----e~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 878 EDAAIHLLNLLWPNIL-----EPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHHhhhhcc-----CCCcHHHHHHHHHHHHHHHHhcc
Confidence 4455566666666554 35666776666666666555665
No 25
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.80 E-value=2.9e-12 Score=136.44 Aligned_cols=497 Identities=18% Similarity=0.269 Sum_probs=315.3
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
.|.+-|.++++....+++..+++|++-|.+|++ .|+.| ..--.||..+..|+.+..|..+|.+++..+ |+-+|.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 467789999999999999999999999999999 89997 667888988999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhh-cchhhHH-------HHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 001307 99 HTQSSLKSMLLQSIQL-ESAKSIS-------KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~-e~~~~vr-------~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (1103)
+.+..+|+-+.+.+.. ..+..+| +.+--++-.|++.++| ..||+++|.+++..+ .+.++.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 9999999999887654 2344444 3455567778899999 899999999999776 4566778888888888
Q ss_pred hhhhh----h------------hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHH
Q 001307 171 SQYIG----D------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1103)
Q Consensus 171 ~~~~~----~------------~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~ 234 (1103)
.+++- + ++...+++++.++.+.|....++..-.+.+..+..+..+++-. -.|.. .+++
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~---yIfeT---nIie 236 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLD---YIFET---NIIE 236 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchh---HHHHH---HHHH
Confidence 77632 1 2233567888888888877667788888888888888876421 11111 2333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccc--hH-------H------------------------------------HHH-
Q 001307 235 TLTESLNNGNEATAQEALELLIELAGTE--PR-------F------------------------------------LRR- 268 (1103)
Q Consensus 235 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~~-------~------------------------------------~~~- 268 (1103)
.+.+... ..++.|...+.||.+++... |. . |..
T Consensus 237 Lv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 3333332 24556666677776665421 10 0 000
Q ss_pred ---hHHHHHHHHHHhhcCCC------------------cchHHHHHHHHHHHHHHHh--hh--c----------------
Q 001307 269 ---QLVDVVGSMLQIAEAES------------------LEEGTRHLAIEFVITLAEA--RE--R---------------- 307 (1103)
Q Consensus 269 ---~~~~l~~~l~~~~~~~~------------------~~~~~r~~a~~~l~~l~~~--~~--~---------------- 307 (1103)
.+..++..-+..+.+++ .+.++-..|++.|..++.. .+ +
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 00011111111111111 1223344566666655431 00 0
Q ss_pred -----cchhhhcch-------hhHHHHHHHHHHhhcCCCCCcccccCCCCCc-------cccCCCchhhHHHHHHHHHHH
Q 001307 308 -----APGMMRKLP-------QFINRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIA 368 (1103)
Q Consensus 308 -----~~~~~~~~~-------~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~e-------d~~~~~~~~~a~~~l~~l~~~ 368 (1103)
.|++....+ ..+.++.-.++..|..+++- .-..+++.| |.|....++...++|-.|+..
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEV--liVendegEivRefvketDtI~lYksmRevLvyLthL 473 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEV--LIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL 473 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceE--EEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence 111111000 11122233333333333210 111111111 111223344455666655533
Q ss_pred cCCCcchHHHHHHHHHhhcCCC--hHHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHH-----hcCCCCChhHHHHHHH
Q 001307 369 LGGNTIVPVASEQLPAYLAAPE--WQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVL-----NSFRDPHPRVRWAAIN 440 (1103)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~-----~~l~d~~~~vr~~a~~ 440 (1103)
.- .+.-...+..+...+.+.. |..-..-++++|+++...++... ..+-.++.-++ +.-+|....|-...+.
T Consensus 474 ~v-~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMy 552 (1053)
T COG5101 474 IV-DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMY 552 (1053)
T ss_pred hh-hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceee
Confidence 21 3333344455555555554 67777888999999877665332 23333443332 3456777777888888
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc-------ccCchHHHHHHHHHHhh
Q 001307 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 441 ~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------l~~~l~~ll~~L~~~l~ 513 (1103)
.+|++-..+..+. .++..++..|+..+.. .+..|+..||..+-.+++.|+... -.|+...++..+-+.-.
T Consensus 553 vvGQYpRFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~ 629 (1053)
T COG5101 553 VVGQYPRFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG 629 (1053)
T ss_pred eeccchHHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc
Confidence 9999888777765 6899999999999988 788999999999999998886432 25677777777666555
Q ss_pred cCChhHHHHHHHHHHHHHHhhhh
Q 001307 514 NGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 514 ~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
+-.+.-+..-..|.|.+++..+.
T Consensus 630 dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 630 DLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred cCChHHHhHHHHHHhHHHhccch
Confidence 55566666777888888776554
No 26
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.76 E-value=8.8e-14 Score=155.47 Aligned_cols=543 Identities=14% Similarity=0.140 Sum_probs=303.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCcccc-----C
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-----L 96 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~-----l 96 (1103)
.....+...+|+|+..++.||+.|+++.+ +++ |...|..+..+ ..+-.+|..|.+.+||.+.++ |.. +
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~~~~i 78 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREENGNSI 78 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhcccCC
Confidence 34455677899999999999999999999 565 66888888876 477899999999999999998 653 5
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh
Q 001307 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (1103)
.++....||..++..+.+ .+..+.-+.+.+++.+|+.++| +.||+++|.+...+++.|...-...+..+..+.+....
T Consensus 79 ~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 79 LPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 566667999999999987 5666666899999999999999 89999999999999998877777788888888776543
Q ss_pred h------chhhHHHHHHHHHHhhCCC-CChHHHH-----------HHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHH
Q 001307 177 T------LTPHLKHLHAVFLNCLTNS-NNPDVKI-----------AALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE 238 (1103)
Q Consensus 177 ~------l~~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~ 238 (1103)
. +....+.+.+++.+.+... ..+..+. .+++.+..+... .-...++-+.+.++..+..+..
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~-~~qdi~eFfEd~l~~~m~~F~k 235 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL-GFQDIPEFFEDNLDKFMEHFCK 235 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHH
Confidence 2 2222333333333333221 0111111 133333333322 1122346677888888888887
Q ss_pred HHhCCCHHHHH-------------HHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHH
Q 001307 239 SLNNGNEATAQ-------------EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES---LEEGTRHLAIEFVITLA 302 (1103)
Q Consensus 239 ~l~~~~~~~~~-------------~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~r~~a~~~l~~l~ 302 (1103)
.+...++..+. ..++.+.-+...++..+.+++-+.++.++..++.-. .-+.+...++.++....
T Consensus 236 lls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~ 315 (947)
T COG5657 236 LLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVI 315 (947)
T ss_pred HHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhh
Confidence 77654444443 234555555566778888877788877777664321 12233444555555554
Q ss_pred Hh--hhccchhhhcchhhHHHHHHHHHHhhc--CCCCCcccccCCCC-----CccccCCCchhhHHHHHHHHHHHcCCCc
Q 001307 303 EA--RERAPGMMRKLPQFINRLFAILMSMLL--DIEDDPLWHSAETE-----DEDAGESSNYSVGQECLDRLAIALGGNT 373 (1103)
Q Consensus 303 ~~--~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~w~~~~~e-----~ed~~~~~~~~~a~~~l~~l~~~~~~~~ 373 (1103)
+. ++..+-......+.+.+++..++..-. ..+|.+.|..++.+ ...+-+...+..+.+.+..+...+| +-
T Consensus 316 k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~-~i 394 (947)
T COG5657 316 KYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFG-RI 394 (947)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHh-hH
Confidence 41 001110011112234444444443221 22333455432211 0001122234456666766666666 56
Q ss_pred chHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCC----ChhHHHH-HHHHHHHh
Q 001307 374 IVPVASEQLPAYLAAPE---WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP----HPRVRWA-AINAIGQL 445 (1103)
Q Consensus 374 ~~~~l~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~----~~~vr~~-a~~~L~~l 445 (1103)
+.+++...+.+....++ -..+.-+++++..+....-..+-+..+-.-+.+.+.+.++ +.+++.. +...+..-
T Consensus 395 ~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r 474 (947)
T COG5657 395 AVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFR 474 (947)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheech
Confidence 67777777777666552 1122222222222222111222222222333333344443 3444322 22222111
Q ss_pred hhhhchh--HHhhhhhhhHHHHHhhccC-CCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC-hhHHH
Q 001307 446 STDLGPD--LQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQE 521 (1103)
Q Consensus 446 ~~~~~~~--~~~~~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~-~~v~~ 521 (1103)
......+ ...-+..+.+........| ..--.+|.+....+..+.-.-. ....-+++++-.+++.+.+.. ...++
T Consensus 475 ~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~--~~~~~lenl~~lvl~~~as~~~~~e~~ 552 (947)
T COG5657 475 NQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC--SKIGLLENLILLVLSLMASPSSLEERE 552 (947)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHHHHHhcCCcchhHHHH
Confidence 1111111 0000111122222222222 0112334444444443322211 123456666666666666554 56788
Q ss_pred HHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhc-CCcccchhhhHHHHHHHHHHH
Q 001307 522 GALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 522 ~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
..+.+++.+....++...|....+++.+.+++... .++....+-...++.++.++.
T Consensus 553 ~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 553 FLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred HHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 89999999999999999998899999999887652 233333333334555555553
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.4e-14 Score=155.00 Aligned_cols=476 Identities=16% Similarity=0.197 Sum_probs=311.2
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCc---chhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHH
Q 001307 116 SAKSISKKLCDTVSELASNILPENGW---PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLN 191 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w---~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~ 191 (1103)
+...+|.....+...+... ..| ..+.|-..+.+++. +...|+.-....+.+..+... ..+....++..+.+
T Consensus 29 ~~~~v~~~ml~a~~~~~~~----~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~-~d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 29 RRIDVRGNMLEAGEAAINQ----HGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI-VDPRPISIIEILLE 103 (569)
T ss_pred cchhhHHhHHHHHHHHHHh----hhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc-cCcchhHHHHHHHH
Confidence 4555665555444333221 344 45666666666654 567787777777777766433 23456677788888
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH-HHHHhH
Q 001307 192 CLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR-FLRRQL 270 (1103)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~ 270 (1103)
.+..+ +..+|.+...|+..+....... ... .+++.+.++++......+..+...+..+...+.- .+.+
T Consensus 104 ~~~tp-s~~~q~~~~~~l~~~~~~~~~~-~~~-------~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-- 172 (569)
T KOG1242|consen 104 ELDTP-SKSVQRAVSTCLPPLVVLSKGL-SGE-------YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-- 172 (569)
T ss_pred hcCCC-cHHHHHHHHHHhhhHHHHhhcc-CHH-------HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--
Confidence 88887 9999999999998887654321 111 3444555555556666777777777766665432 1221
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcccc
Q 001307 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (1103)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~ 350 (1103)
..++..+.....++. ...-|..+.-.....+.. -+ ....|++-.++|.++....+..
T Consensus 173 ~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~--Lg----~~~EPyiv~~lp~il~~~~d~~---------------- 229 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKK-SALNREAALLAFEAAQGN--LG----PPFEPYIVPILPSILTNFGDKI---------------- 229 (569)
T ss_pred hhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHh--cC----CCCCchHHhhHHHHHHHhhccc----------------
Confidence 123333333333321 222233233222233331 11 2345788999999888765432
Q ss_pred CCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCC
Q 001307 351 ESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP 430 (1103)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 430 (1103)
...+.++..+...+.+.++ .+-++.++|.+...+....|+.+.+++..+|.+++..++.+...++.++|.+...+.|.
T Consensus 230 -~~Vr~Aa~~a~kai~~~~~-~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT 307 (569)
T KOG1242|consen 230 -NKVREAAVEAAKAIMRCLS-AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT 307 (569)
T ss_pred -hhhhHHHHHHHHHHHHhcC-cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC
Confidence 2356677788888887775 33344444444344444489999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhch-hH----------------------------------HhhhhhhhHHHHHhhccCCCCc
Q 001307 431 HPRVRWAAINAIGQLSTDLGP-DL----------------------------------QNQFHPQVLPALAGAMDDFQNP 475 (1103)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~~-~~----------------------------------~~~~~~~il~~l~~~l~~~~~~ 475 (1103)
+|.||.++..++-+++..... ++ ..+.+.-++|.+-+.+++ .+.
T Consensus 308 ~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~e-Rst 386 (569)
T KOG1242|consen 308 KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAE-RST 386 (569)
T ss_pred CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhh-ccc
Confidence 999999999999988875531 11 112234455666666665 555
Q ss_pred chHHHHHHHHHHHHhcC-CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHh
Q 001307 476 RVQAHAASAVLNFSENC-TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~-~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1103)
..+..++..+.+++.-. .+..+.||++.+++.+-..+.+..|.+|..+..+++.+.+..+.. +++...|.+...+.
T Consensus 387 ~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 387 SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSETLT 463 (569)
T ss_pred hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhc
Confidence 66778888888888777 556789999999999999999999999999999999999988864 34778888877764
Q ss_pred hcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhh
Q 001307 555 NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (1103)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 634 (1103)
.... ...|..+.+.++.+....|.+.+..+.+.++..... . ..+..++...+..+.-+-..+|..|.||+..
T Consensus 464 ~~k~---~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~----~-~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~ 535 (569)
T KOG1242|consen 464 SEKS---LVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASS----V-LIDERIRDGVIWLFYLLPYIFGFQFQPYIHE 535 (569)
T ss_pred cchh---hhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhh----c-cchhhhccCeeehhhccchhhhHHhHHHHHH
Confidence 3221 123444455556555555545444444444443322 1 1111244455555666677788999999999
Q ss_pred hhHHHHHhcc
Q 001307 635 VMPPLLQSAQ 644 (1103)
Q Consensus 635 i~~~ll~~~~ 644 (1103)
+++.+++.+.
T Consensus 536 i~~~~~k~~a 545 (569)
T KOG1242|consen 536 ILDEFLKGLA 545 (569)
T ss_pred HHHHHHHHhh
Confidence 9999999885
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3.7e-12 Score=149.37 Aligned_cols=640 Identities=15% Similarity=0.153 Sum_probs=393.7
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC----CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 001307 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~----~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (1103)
+......+...+...+.+ ++++.|++.|-.+=.+.++..... ..+++...+.+.+.+.++-.+..|.+-++.+.+
T Consensus 812 n~~~~~~~~~~l~~~~~s-~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 812 NDTRETIILKLLDTLLTS-PNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred CCccHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Confidence 333445566666666665 899999999998888877764221 456777777888888888777778777776666
Q ss_pred hhhhhchh-hHHHHHHHHHHhhCCC-----------------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHH
Q 001307 173 YIGDTLTP-HLKHLHAVFLNCLTNS-----------------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1103)
Q Consensus 173 ~~~~~l~~-~~~~l~~~l~~~l~~~-----------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~ 234 (1103)
-.+..+.. .++.++..|..+-... +...=.....+=+++++..+.. .+++-.+|+
T Consensus 891 lgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~ 963 (1702)
T KOG0915|consen 891 LGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQ 963 (1702)
T ss_pred cCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHH
Confidence 54444332 2333444433321110 0001123455555666555421 133334444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001307 235 TLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1103)
Q Consensus 235 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 314 (1103)
.-.. +-.+..+.++.-.|..+++.....+.||++.++|.++..- -|.+..++..-..+|.+++.. .-.+
T Consensus 964 LAnh---~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~--yDP~~~Vq~aM~sIW~~Li~D---~k~~--- 1032 (1702)
T KOG0915|consen 964 LANH---NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ--YDPDKKVQDAMTSIWNALITD---SKKV--- 1032 (1702)
T ss_pred Hhhh---hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc--cCCcHHHHHHHHHHHHHhccC---hHHH---
Confidence 3322 2356677888888999999999999999999999998754 245677888777888888762 0000
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHH
Q 001307 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1103)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1103)
...|+..| +.-+...+.+..|++|
T Consensus 1033 vd~y~neI--------------------------------------------------------l~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 1033 VDEYLNEI--------------------------------------------------------LDELLVNLTSKEWRVR 1056 (1702)
T ss_pred HHHHHHHH--------------------------------------------------------HHHHHHhccchhHHHH
Confidence 01122222 2222223456789999
Q ss_pred HHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHH---HHHhhhhhch----hHHhhhhhhhHHHHH
Q 001307 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA---IGQLSTDLGP----DLQNQFHPQVLPALA 466 (1103)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~---L~~l~~~~~~----~~~~~~~~~il~~l~ 466 (1103)
++++.++..+..+.+ +.+.+++++++..+++.+.|-+.-||.+|-.+ |+.++-...+ .-..+.+..++|.++
T Consensus 1057 easclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl 1136 (1702)
T KOG0915|consen 1057 EASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLL 1136 (1702)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHh
Confidence 999999999999866 47778999999999999999999999987544 5554443321 111457888999987
Q ss_pred h-hccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH-HHHHHHHHHhhhhhhHhhHhh
Q 001307 467 G-AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA-LTALASVADSSQEHFQKYYDA 544 (1103)
Q Consensus 467 ~-~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~a-l~al~~l~~~~~~~~~~~~~~ 544 (1103)
. ++-+ ..+.||..++..+..+....+.. +.||++.+++.|+.....-.+.|.... +.+. +.. ..
T Consensus 1137 ~~gims-~v~evr~~si~tl~dl~Kssg~~-lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~-------~~e-----~e 1202 (1702)
T KOG0915|consen 1137 DEGIMS-KVNEVRRFSIGTLMDLAKSSGKE-LKPHFPKLIPLLLNAYSELEPQVLNYLSLRLI-------NIE-----TE 1202 (1702)
T ss_pred ccCccc-chHHHHHHHHHHHHHHHHhchhh-hcchhhHHHHHHHHHccccchHHHHHHHHhhh-------hhH-----HH
Confidence 5 3334 57899999999999999999875 899999999999998876555443221 1110 000 01
Q ss_pred hhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHh
Q 001307 545 VMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (1103)
Q Consensus 545 i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1103)
.+.-+..-..+ + ...++++..+...+....+ .++++.+.++...++. -.-+..+..++.-++..+
T Consensus 1203 alDt~R~s~ak--s-------spmmeTi~~ci~~iD~~vL----eelip~l~el~R~sVg--l~Tkvg~A~fI~~L~~r~ 1267 (1702)
T KOG0915|consen 1203 ALDTLRASAAK--S-------SPMMETINKCINYIDISVL----EELIPRLTELVRGSVG--LGTKVGCASFISLLVQRL 1267 (1702)
T ss_pred HHHHHHHhhhc--C-------CcHHHHHHHHHHhhhHHHH----HHHHHHHHHHHhccCC--CCcchhHHHHHHHHHHHh
Confidence 11111111111 0 0124555555544443322 3344444443322222 224567777888899999
Q ss_pred cCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhh-
Q 001307 625 GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK- 703 (1103)
Q Consensus 625 ~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~- 703 (1103)
|.++.||-..++..++..+... . + ...|..| .+.+.+++...
T Consensus 1268 ~~emtP~sgKll~al~~g~~dR-------------------N--e---------------sv~kafA-sAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1268 GSEMTPYSGKLLRALFPGAKDR-------------------N--E---------------SVRKAFA-SAMGYLAKFSSP 1310 (1702)
T ss_pred ccccCcchhHHHHHHhhccccc-------------------c--H---------------HHHHHHH-HHHHHHHhcCCh
Confidence 9999999999999999887421 0 0 0112222 24455555433
Q ss_pred hhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHH
Q 001307 704 EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTE 783 (1103)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 783 (1103)
+.+.-+++.++.. ++.+ .++.++.++.++.++... ..+.++...+.|+|.++-...++ +.
T Consensus 1311 dq~qKLie~~l~~---~l~k--~es~~siscatis~Ian~-------------s~e~Lkn~asaILPLiFLa~~ee-~K- 1370 (1702)
T KOG0915|consen 1311 DQMQKLIETLLAD---LLGK--DESLKSISCATISNIANY-------------SQEMLKNYASAILPLIFLAMHEE-EK- 1370 (1702)
T ss_pred HHHHHHHHHHHHH---Hhcc--CCCccchhHHHHHHHHHh-------------hHHHHHhhHHHHHHHHHHHHhHH-HH-
Confidence 3454444444333 3332 344556666666664333 34557788889999877766655 22
Q ss_pred HHHHHHHHHHHHHHHhCCC-C-C-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHH
Q 001307 784 ICASMLDSLNECIQISGPL-L-D-EGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQV 860 (1103)
Q Consensus 784 ~~~~~~~~l~~~~~~~g~~-~-~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~ 860 (1103)
+..+-..+++..+.++ . . +=+...++..+..... +++.+.++..+
T Consensus 1371 ---a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~-----------------------------nn~~w~lr~q~ 1418 (1702)
T KOG0915|consen 1371 ---ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENIT-----------------------------NNESWKLRKQA 1418 (1702)
T ss_pred ---HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhc-----------------------------cchHHHHHHHH
Confidence 2234455666665442 1 1 1122333332221111 11456788888
Q ss_pred HHHHHHHHHHhhhchh-hhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH
Q 001307 861 GEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE 930 (1103)
Q Consensus 861 ~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 930 (1103)
+..+..++........ |++..+.+.+..-+ .++.++.+...+..+...++.|+......++.++.+.+.
T Consensus 1419 Akai~~~a~~~sss~~~p~ilkl~~~ll~~L-~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~ 1488 (1702)
T KOG0915|consen 1419 AKAIRVIAEGLSSSAPIPVILKLALSLLDTL-NGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVME 1488 (1702)
T ss_pred HHHHHHHcccccccCChHHHHHHHHHHHHHh-hccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHH
Confidence 8888888877665544 88888888888876 578999999999999999999988776655555555444
No 29
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6e-10 Score=126.57 Aligned_cols=567 Identities=14% Similarity=0.181 Sum_probs=293.7
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC--HhHHHHHHHHHHHhhh-hhhhh--------chh-hHH
Q 001307 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS--VKLQESAFLIFAQLSQ-YIGDT--------LTP-HLK 183 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~--~~~r~~al~~l~~l~~-~~~~~--------l~~-~~~ 183 (1103)
+++..|+.+-+-+..+ .+-|.+++.+.+.+.+.+ ..+|++|..-|..... +.+.. +.+ .-.
T Consensus 16 ~d~~~R~~AE~~L~q~-------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~ 88 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQL-------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKA 88 (1010)
T ss_pred CChHHHHHHHHHHHHh-------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHH
Confidence 4688998866655433 356888999999887653 3567777655655543 32221 111 122
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1103)
-+..-++..+-.. +..+|..-..++..++..- |.+-+|.+++.+...+++++......++-|+-.+++.+.
T Consensus 89 ~irenIl~~iv~~-p~~iRvql~~~l~~Ii~~D--------~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 89 VIRENILETIVQV-PELIRVQLTACLNTIIKAD--------YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHhC-chHHHHHHHHHHHHHHhcC--------CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 3334455555554 6678877777787777642 345677888888888888888888899999999998763
Q ss_pred -------HHHHHhHHHHHHHHHH----hhcCCCc-chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001307 264 -------RFLRRQLVDVVGSMLQ----IAEAESL-EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1103)
Q Consensus 264 -------~~~~~~~~~l~~~l~~----~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1103)
..+...+..++|.+++ ++...+. ..++....+....+++-+ .-|.... .++.+...+..++..+.
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~L~-~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLELS-APETFTSWMELFLSILN 236 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHHhh-CchhHHHHHHHHHHHHc
Confidence 1233334444444444 3332211 112233334444444432 1232111 11222333333333333
Q ss_pred CCCCCcccccCCCCCccccCCCchhh---HHHHHHHHHHHcCCCc----------------chHHHHH----HHHHhhcC
Q 001307 332 DIEDDPLWHSAETEDEDAGESSNYSV---GQECLDRLAIALGGNT----------------IVPVASE----QLPAYLAA 388 (1103)
Q Consensus 332 ~~~~~~~w~~~~~e~ed~~~~~~~~~---a~~~l~~l~~~~~~~~----------------~~~~l~~----~l~~~l~~ 388 (1103)
..-..+ .-..|+|++..+.+|++ |...+.|+...+|... +.+.+++ .+.++-+
T Consensus 237 rpvP~E---~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~- 312 (1010)
T KOG1991|consen 237 RPVPVE---VLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ- 312 (1010)
T ss_pred CCCChh---cccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 221100 01113444556666765 6666777777776421 1111111 1111111
Q ss_pred CChHHHHHHHHHHHHHHhhcH-----HHHHHhHHHHHH-HHHhcC--CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001307 389 PEWQKHHAALIALAQIAEGCA-----KVMVKNLEQVLS-MVLNSF--RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~~i~~-~l~~~l--~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 460 (1103)
+-|..-+.-..++..+..+.. +.++||+.-++. .+++.+ +|.+...= +.-+ .+|...
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelw-----------e~DP----~EYiR~ 377 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELW-----------EEDP----YEYIRK 377 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHH-----------hcCH----HHHHHh
Confidence 334333344444444444332 245566665543 333332 22221100 0000 112211
Q ss_pred hHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHhhhh
Q 001307 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~----~~~~v~~~al~al~~l~~~~~~ 536 (1103)
-+ ....|-.+|+ .+|..++..++..-+++.+.+.++-+++.+-+.-.+ .++.-++.|+.++|++++...+
T Consensus 378 ~~----Di~ed~~sp~--~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K 451 (1010)
T KOG1991|consen 378 KF----DIFEDGYSPD--TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK 451 (1010)
T ss_pred cC----chhcccCCCc--HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc
Confidence 11 1222212333 667788888888877665555555555444433222 3467788999999999976543
Q ss_pred hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH-hhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001307 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM-AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1103)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~-~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1103)
. .||.+.+--++.+..-..-......+|++|++.++.++. -+.. ...+.++++...+...+ +.+-|++-.+.-
T Consensus 452 ~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~--d~~lPV~VeAal 525 (1010)
T KOG1991|consen 452 K-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLN--DNELPVRVEAAL 525 (1010)
T ss_pred C-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhcc--CCcCchhhHHHH
Confidence 2 344443333333333222233456799999999999873 2221 12344455555442221 233466655555
Q ss_pred HHHHHHhHhc---CCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHH
Q 001307 616 AWARLCKCLG---QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (1103)
Q Consensus 616 ~~~~l~~~~~---~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~ 692 (1103)
|+..+..... ..+.|++|.+|+.+++..+.- +-|+..
T Consensus 526 ALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-----------------End~Lt----------------------- 565 (1010)
T KOG1991|consen 526 ALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-----------------ENDDLT----------------------- 565 (1010)
T ss_pred HHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-----------------chhHHH-----------------------
Confidence 7777777765 448999999999999887421 111111
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHhc----ccccc--cCC---HHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 001307 693 NMLCCYADELKEGFFPWIDQVAPTLV----PLLKF--YFH---EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ 763 (1103)
Q Consensus 693 ~~l~~l~~~~~~~~~p~~~~~~~~l~----~~l~~--~~~---~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~ 763 (1103)
.++..++...++.+.||..++.+.+. +++.. ..+ ++=.-+|..+|..+...+ ...+ ..|+-+++
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til-~s~e------~~p~vl~~ 638 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTIL-LSLE------NHPEVLKQ 638 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH-HHHh------ccHHHHHH
Confidence 25666777777888888766655433 33321 112 223334444444333222 2222 14556666
Q ss_pred HHHHHHHHHHHHHccC
Q 001307 764 LSDFIIPALVEALHKE 779 (1103)
Q Consensus 764 ~~~~i~~~l~~~~~~~ 779 (1103)
+-..++|.+-..++++
T Consensus 639 le~~~l~vi~~iL~~~ 654 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKND 654 (1010)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666677666655554
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.5e-14 Score=150.84 Aligned_cols=439 Identities=18% Similarity=0.209 Sum_probs=330.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccc
Q 001307 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1103)
Q Consensus 57 ~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~ 136 (1103)
++..|+..+. .+.+.+|+....+|..+.... .....+.+...+.+.+.. +...-|..++..++.+.+...
T Consensus 97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~~~--------~~~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 97 IIEILLEELD-TPSKSVQRAVSTCLPPLVVLS--------KGLSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHhhhHHHHh--------hccCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcH
Confidence 4455555543 677899999999998876432 223345566667777774 688888888888887766432
Q ss_pred CC-CCcchhHHHHHHhhcCCC-HhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001307 137 PE-NGWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1103)
Q Consensus 137 ~~-~~w~~ll~~l~~~~~s~~-~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1103)
-. ..-..++..+...+.+.+ ...|+.++..+...+...+..+.+|+..++|.++....|. ...||.+|..+...++.
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMR 245 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 21 122345677777777764 4667788999999999999889999999999999999997 89999999999999988
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHH
Q 001307 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1103)
Q Consensus 215 ~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a 294 (1103)
.+. ......++|.++..+... .+.....+++.++.+++..+..+.-.++++++.+...+.+ ...++|..+
T Consensus 246 ~~~----~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D--T~~evr~a~ 315 (569)
T KOG1242|consen 246 CLS----AYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD--TKPEVRKAG 315 (569)
T ss_pred hcC----cchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc--CCHHHHHHH
Confidence 773 344567777777766653 6677888999999999999999999999999999998864 579999999
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHH-----c
Q 001307 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA-----L 369 (1103)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~-----~ 369 (1103)
.+++..+++.. + .+-+..++|.++..+.+.... ..+|++.|... +
T Consensus 316 ~~~l~~~~svi-------d--N~dI~~~ip~Lld~l~dp~~~---------------------~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 316 IETLLKFGSVI-------D--NPDIQKIIPTLLDALADPSCY---------------------TPECLDSLGATTFVAEV 365 (569)
T ss_pred HHHHHHHHHhh-------c--cHHHHHHHHHHHHHhcCcccc---------------------hHHHHHhhcceeeeeee
Confidence 99999888731 1 245888999998888765311 12344444321 1
Q ss_pred CCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc--HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhh
Q 001307 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC--AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1103)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~ 447 (1103)
- ..-+..+.|.+.+.+...+...++.+...++.++.-. +..+.++++.++|.+-..+.|+.|.+|..+.++||.+.+
T Consensus 366 ~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 366 D-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred c-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 1 2345567788888777666667777888888888766 567889999999999999999999999999999999998
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHH
Q 001307 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALT 525 (1103)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~--~~~v~~~al~ 525 (1103)
..+. .+.+...|.+...+.+.....-+..+...+...+...+- .+...+++.+.....+. .+.++...+.
T Consensus 445 ~~g~----~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v----~~~~~~~~~~~a~~~~~~~~~~~~dg~~~ 516 (569)
T KOG1242|consen 445 RLGE----VSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV----EKVEDILPEILANASSVLIDERIRDGVIW 516 (569)
T ss_pred HHHh----hcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc----hHHHHHHHHHHHHHhhccchhhhccCeee
Confidence 8874 345899999999887734445566777777777776653 45666666666655544 3557888888
Q ss_pred HHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 526 ALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 526 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
.+..+-...+..|.+|+..+++.+.+.+..
T Consensus 517 ~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 517 LFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred hhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 888777778888999999999988887753
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.3e-09 Score=126.56 Aligned_cols=731 Identities=12% Similarity=0.139 Sum_probs=384.3
Q ss_pred HHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc-
Q 001307 58 TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI- 135 (1103)
Q Consensus 58 ~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~- 135 (1103)
...|..+++. +.+..++..+.-+|..++...+-..|. ....+..+...+.-.+- +.+.+|..+.+.+..+...-
T Consensus 95 ~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il~~~~h--~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 95 LNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGILAFAAH--KKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHcCCC
Confidence 4555555553 778889999999999999987777798 34556666544433333 57888888888777765510
Q ss_pred -cCC----------------------------------------CCcch-hHHHHHH----hhcCCCHhHHHHHHHHHHH
Q 001307 136 -LPE----------------------------------------NGWPE-LLPFMFQ----CVSSDSVKLQESAFLIFAQ 169 (1103)
Q Consensus 136 -~~~----------------------------------------~~w~~-ll~~l~~----~~~s~~~~~r~~al~~l~~ 169 (1103)
.|. ..||. ++..+++ .....+..++..++.++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 000 12332 2222222 2223333444455555555
Q ss_pred hhhhhhhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001307 170 LSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1103)
Q Consensus 170 l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~ 248 (1103)
+....++.+.. ....++..+...--+..+...-.+.++++......+... ..+....-+|.++..++.+..++.++..
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~-q~~~~~~~~~~~~~~~~t~~~s~~~e~~ 329 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATL-QEEKALQALPRLFSLFFTILESLIEELV 329 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHh-CHHHHHHhhhhhhhHHHHHHhcccHHHH
Confidence 54443332221 112222222222112223344444555554443333211 2233334577788888888888888888
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHH-HhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001307 249 QEALELLIELAGTEPRFLRRQLVDVVGSML-QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1103)
+.+-+++.++....+. +.+.++...+ ..++.+ --.+-..++.++..+.+. .. +...+++.+.+..+.
T Consensus 330 q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~k--f~~~~~~ilqi~s~~fek---~G---~~s~~~l~~~L~~l~ 397 (1176)
T KOG1248|consen 330 QAASQSLKEILKESVT----VIDALCSKQLHSLLDYK--FHAVWRFILQILSALFEK---CG---ELSGPELTKTLEGLC 397 (1176)
T ss_pred HHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHH---hh---hhcCHHHHHHHHHHH
Confidence 9999999998887665 2223333311 111111 122333455566666552 11 122334444443332
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC----ChHHHHHHHHHHHH
Q 001307 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP----EWQKHHAALIALAQ 403 (1103)
Q Consensus 328 ~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~----~~~~r~aal~~l~~ 403 (1103)
. |...+ +........+|++.-..+.||+.++. ++|.=. ...+. .|-. =.|-.
T Consensus 398 ~----------lr~~~-------d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl-~~~s~~~~RsWLL-----PvLR~ 453 (1176)
T KOG1248|consen 398 D----------LRASP-------DFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL-HAESLSFTRSWLL-----PVLRD 453 (1176)
T ss_pred H----------hhcCC-------CCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc-cccccccchhHhH-----HHHHH
Confidence 2 11111 01111235567777777888644332 222211 11111 1210 01111
Q ss_pred HHhhcH-HHHHHhHHHHHHHHHh---cCCCC-Chh-H-HHHHHHH---HHHhhhhhchhHHhhhhhhhHHHHHhhccCCC
Q 001307 404 IAEGCA-KVMVKNLEQVLSMVLN---SFRDP-HPR-V-RWAAINA---IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (1103)
Q Consensus 404 l~~~~~-~~~~~~l~~i~~~l~~---~l~d~-~~~-v-r~~a~~~---L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~ 473 (1103)
-+.+.+ .++..++-.+...+.. .+..+ ++. + +.-.... |-.+|+. +-+. ..-+..+.|.+...+..
T Consensus 454 ~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl-~~sF~~la~~l~~al~~-- 529 (1176)
T KOG1248|consen 454 YIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-PVDL-AESFTDLAPILGAALLK-- 529 (1176)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-CccH-HHHHHHHHHHHHHHHhc--
Confidence 011111 1122222222111111 12222 111 2 2222222 2333332 2233 34477889999988886
Q ss_pred CcchHHHHHHHHHHHHhcCC--------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh-hhhHhhHhh
Q 001307 474 NPRVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-EHFQKYYDA 544 (1103)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~--------~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~-~~~~~~~~~ 544 (1103)
.+..|...|.+|..+++... .+.+..|-.+.++.++.........-+ .++.+......... ..|..-...
T Consensus 530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~d 608 (1176)
T KOG1248|consen 530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTD 608 (1176)
T ss_pred chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHH
Confidence 56999999999999998752 234667888899999998876654443 33333333333322 222222333
Q ss_pred hhHHHHHHHhhcCCcccc----hhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHH
Q 001307 545 VMPFLKAILVNATDKSNR----MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARL 620 (1103)
Q Consensus 545 i~~~l~~~l~~~~~~~~~----~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 620 (1103)
+...+...+.......+. .....-++-+..++.....+....+. .+++...+ . ++.-+..-....+..+
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~----~--~~~~vQkK~yrlL~~l 681 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFEN----S--SSTKVQKKAYRLLEEL 681 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhc----c--ccHHHHHHHHHHHHHH
Confidence 444444443331111111 11122223333333322212111111 22222111 1 1122333444556665
Q ss_pred HhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHH
Q 001307 621 CKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYAD 700 (1103)
Q Consensus 621 ~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~ 700 (1103)
+.. +....+..+-+..+.+.+... .++.-.-.+..++.+|..+.+
T Consensus 682 ~~~--~s~~~~~~q~i~~I~n~L~ds---------------------------------~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 682 SSS--PSGEGLVEQRIDDIFNSLLDS---------------------------------FQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred hcC--CchhhHHHHHHHHHHHHHHHH---------------------------------HhccchHHHHHHHHHHHHHHH
Confidence 555 222223333333333332100 000111235678889999999
Q ss_pred HhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCC
Q 001307 701 ELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 780 (1103)
Q Consensus 701 ~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 780 (1103)
.++..+..++.+.++.++-.+. ..+..-|+.|..+|..+... ......| ..+ ....++.+++.+...+..+.
T Consensus 727 ~~~~e~~~~i~k~I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i-~~~~d~g----~e~--~~~~lnefl~~Isagl~gd~ 798 (1176)
T KOG1248|consen 727 LLSAEHCDLIPKLIPEVILSLK-EVNVKARRNAFALLVFIGAI-QSSLDDG----NEP--ASAILNEFLSIISAGLVGDS 798 (1176)
T ss_pred hccHHHHHHHHHHHHHHHHhcc-cccHHHHhhHHHHHHHHHHH-Hhhhccc----ccc--hHHHHHHHHHHHHhhhcccH
Confidence 9887777777777777665554 46889999999998888741 1111222 222 33455566666666655553
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHH
Q 001307 781 DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQV 860 (1103)
Q Consensus 781 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~ 860 (1103)
-. ++..-+-++..++...+..++.+.+..+++.+...|... ..+++..|
T Consensus 799 ~~-~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~------------------------------sreI~kaA 847 (1176)
T KOG1248|consen 799 TR-VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN------------------------------SREIAKAA 847 (1176)
T ss_pred HH-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC------------------------------CHHHHHHH
Confidence 33 333338888889999888889999999999888887652 23468889
Q ss_pred HHHHHHHHHHhhhc-hhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhh
Q 001307 861 GEILGTLIKTFKAA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA 916 (1103)
Q Consensus 861 ~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~ 916 (1103)
..++..++..++.. ..||.++++|.++... ++.....|...-..|-.+++.+|..
T Consensus 848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 848 IGFIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999865 5689999999999865 5557788999999999999999864
No 32
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.1e-11 Score=130.33 Aligned_cols=466 Identities=16% Similarity=0.208 Sum_probs=287.6
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhh--cch
Q 001307 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESA 117 (1103)
Q Consensus 40 ~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~--e~~ 117 (1103)
.+|..+|.+|+++ ++.| ...-+++....+.....+|+..+|+++... +..+++.+...+|+.++..+.. +..
T Consensus 2 ~~A~~~L~~FQ~S-~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQKS-NDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCCC-hHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 4688999999994 5555 778888887778899999999999999987 8889888888888866665543 134
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh---------------hchhhH
Q 001307 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD---------------TLTPHL 182 (1103)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~---------------~l~~~~ 182 (1103)
+.+|.+++-+++.++-+. + .|.+-++.+.+...+..+. --.-+.+|..+.++..+ .+....
T Consensus 76 ~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 489999999999998864 3 7988777777777776655 33556777777765321 223345
Q ss_pred HHHHHHHHHhhCCC--CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHH------------------------------
Q 001307 183 KHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP------------------------------ 230 (1103)
Q Consensus 183 ~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip------------------------------ 230 (1103)
..++..+...++++ ++..+-..++++++++.....- ..+.+-...|
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~--~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVF--PPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccC--CHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhh
Confidence 56666677777665 1245566777888877652110 0111111001
Q ss_pred ----------------HHHHHHHHHH-hCCCHHHHHHHHHHHHHHHccchHHHHH---hHHHHHHHHHHhhcCCCcchHH
Q 001307 231 ----------------LMMRTLTESL-NNGNEATAQEALELLIELAGTEPRFLRR---QLVDVVGSMLQIAEAESLEEGT 290 (1103)
Q Consensus 231 ----------------~ll~~l~~~l-~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~ 290 (1103)
.+++...... ...+.+.....++.|.++.+.+...+.. ..-.+++.++-... +.+.++
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~--h~~~ev 307 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG--HNDTEV 307 (559)
T ss_pred hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc--CCchhh
Confidence 1111111111 1224444455556666665544333221 11123333333332 345678
Q ss_pred HHHHHHHHHHHHHhh--hccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccC-CCchhhHHHHHHHHHH
Q 001307 291 RHLAIEFVITLAEAR--ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGE-SSNYSVGQECLDRLAI 367 (1103)
Q Consensus 291 r~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~-~~~~~~a~~~l~~l~~ 367 (1103)
-...+.+|..+.+.- .+.+.....+.+|..+++..+......+.+... -.|++++ ..-+....+.+..++.
T Consensus 308 ie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~------l~Ee~~~f~~fR~~v~dvl~Dv~~ 381 (559)
T KOG2081|consen 308 IEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFD------LPEEESEFFEFRLKVGDVLKDVAF 381 (559)
T ss_pred hhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCcccc------CccchhHHHHHHHHHHHHHHHHHH
Confidence 888999999987741 123333445678999999999888776542110 0111111 1122234556666777
Q ss_pred HcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhh
Q 001307 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1103)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~ 447 (1103)
.+|+...+..+...+.+ .++.|+.-+|++..+..++...+..-.+.+++++..+.+.=.. ..+|+.++..+|.+++
T Consensus 382 iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q--~~~~~ts~ll~g~~~e 457 (559)
T KOG2081|consen 382 IIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQ--APLRYTSILLLGEYSE 457 (559)
T ss_pred HhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccc--hhHHHHHHHHHHHHHH
Confidence 77876666655544444 4678999999999999999887654455667777766654322 2399999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHH
Q 001307 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTA 526 (1103)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~-~~~v~~~al~a 526 (1103)
++..+- .+...++..+...+.. . +...++..++..++..+... +.+.++.+...+..+.... +....- .+..
T Consensus 458 w~~~~p--~~le~v~~~~~~~~~~-~--~~as~~a~~~~~i~~~c~~~-~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~ 530 (559)
T KOG2081|consen 458 WVEQHP--ELLEPVLRYIRQGLQL-K--RLASAAALAFHRICSACRVQ-MTCLIPSLLELIRSLDSTQINEEAAC-LLQG 530 (559)
T ss_pred HHHhCc--HHHHHHHHHHHHHhhh-c--chhHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 986653 5677788888888877 2 27778888888888777543 3344444443333222211 122222 4455
Q ss_pred HHHHHHhhhh
Q 001307 527 LASVADSSQE 536 (1103)
Q Consensus 527 l~~l~~~~~~ 536 (1103)
++.++...+.
T Consensus 531 ~s~i~~~lp~ 540 (559)
T KOG2081|consen 531 ISLIISNLPA 540 (559)
T ss_pred HHHHHhcCCH
Confidence 5555554443
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.57 E-value=3.4e-10 Score=132.45 Aligned_cols=476 Identities=13% Similarity=0.141 Sum_probs=296.2
Q ss_pred CCChH-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCccc
Q 001307 18 GPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWP 94 (1103)
Q Consensus 18 ~~d~~-~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~ 94 (1103)
|.|.. -+..++..+.++|-+.|+-..-++..+.+.+|+..+...-.+..+ ++++.+|-+|.-.|.++-
T Consensus 63 G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir--------- 133 (746)
T PTZ00429 63 GRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR--------- 133 (746)
T ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---------
Confidence 33443 466777788888889999999999888777787533333333322 778999999887776532
Q ss_pred cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q 001307 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1103)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~-~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 173 (1103)
.++..+.+-..+.+++.+ +++.||+.++-++.++.+.. |+- .-..+++.+.+++.++++.+...|+.+|..+.+.
T Consensus 134 --~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 134 --VSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred --cHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 245666676777777876 79999999999999987742 211 1124567788888899999999999999999876
Q ss_pred hhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 001307 174 IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALE 253 (1103)
Q Consensus 174 ~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~ 253 (1103)
.+..+. .....+..+...+.+- ++--+...++++.. +.+. +..... .+++.+...+++.++.+...+++
T Consensus 210 ~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~---y~P~--~~~e~~----~il~~l~~~Lq~~N~AVVl~Aik 278 (746)
T PTZ00429 210 GSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELLAA---QRPS--DKESAE----TLLTRVLPRMSHQNPAVVMGAIK 278 (746)
T ss_pred CchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh---cCCC--CcHHHH----HHHHHHHHHhcCCCHHHHHHHHH
Confidence 554332 2233344455556554 44455566666633 2211 111122 45666666777889999999999
Q ss_pred HHHHHHccc-hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC
Q 001307 254 LLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1103)
Q Consensus 254 ~l~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1103)
++..+.... +..+...+..+-..++.+.. .+.+++..++..+..++. ..|.. +..-+...+....
T Consensus 279 ~il~l~~~~~~~~~~~~~~rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~---~~P~l-------f~~~~~~Ff~~~~- 344 (746)
T PTZ00429 279 VVANLASRCSQELIERCTVRVNTALLTLSR---RDAETQYIVCKNIHALLV---IFPNL-------LRTNLDSFYVRYS- 344 (746)
T ss_pred HHHHhcCcCCHHHHHHHHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHH---HCHHH-------HHHHHHhhhcccC-
Confidence 999887543 33334444444454555532 357889999988877777 34432 2221222211111
Q ss_pred CCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHH
Q 001307 333 IEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM 412 (1103)
Q Consensus 333 ~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~ 412 (1103)
| ..+ +....|+.|..... +.-+..++.-+.++..+.+...+..++.++|.++...+.
T Consensus 345 ---D----------------p~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-- 401 (746)
T PTZ00429 345 ---D----------------PPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS-- 401 (746)
T ss_pred ---C----------------cHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--
Confidence 0 112 34445555554444 444566777788888888889999999999999877654
Q ss_pred HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc--cCCCCcchHHHHHHHHHHHHh
Q 001307 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 413 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l--~~~~~~~v~~~a~~al~~l~~ 490 (1103)
....++..++..+.+....+. .+...+..+....+. .+ +++.++..+ ....++..+...+|.|+.+++
T Consensus 402 --~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~----~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 402 --VAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPE----LL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred --HHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCcc----HH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 344555555556655444333 456666666544332 11 455555433 222457788888999999987
Q ss_pred cCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHH
Q 001307 491 NCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSME 570 (1103)
Q Consensus 491 ~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~ 570 (1103)
..+ ..+.++..++.-+...+..||-.++.+...+....+....+ .+..++..+.+ +.++..+|-+|+.
T Consensus 472 ~I~------~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t~--~~~d~DVRDRA~~ 539 (746)
T PTZ00429 472 FIE------NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVTT--HSDDPDVRDRAFA 539 (746)
T ss_pred hHh------hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHh--cCCChhHHHHHHH
Confidence 553 23455655665555667889999998888887665543322 33333333222 2234568888887
Q ss_pred HHHHHH
Q 001307 571 CISLVG 576 (1103)
Q Consensus 571 ~l~~i~ 576 (1103)
....+.
T Consensus 540 Y~rLLs 545 (746)
T PTZ00429 540 YWRLLS 545 (746)
T ss_pred HHHHHc
Confidence 766553
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.2e-12 Score=132.06 Aligned_cols=394 Identities=15% Similarity=0.163 Sum_probs=284.0
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcc---hhHHHH-HHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhH
Q 001307 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWP---ELLPFM-FQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL 182 (1103)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~---~ll~~l-~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~ 182 (1103)
.+.++|.+ .-.+-|++++.-+..+.+....++... .++..+ -....+++.+.|.+++..+....-..+..-..|.
T Consensus 4 ~i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~ 82 (675)
T KOG0212|consen 4 SIARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYL 82 (675)
T ss_pred Hhhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHH
Confidence 34566665 577788889999999998766655443 344433 2345677888888999888888777666656699
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc
Q 001307 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1103)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 262 (1103)
..+++.+..+++|+ +..||..|+..+.++...... .+...++.+..+++....+.+..++ .+.+.+..+...-
T Consensus 83 ~~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k~-----~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdI 155 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAKG-----EVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDI 155 (675)
T ss_pred HHhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhcc-----CcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHh
Confidence 99999999999998 999999999999999886532 2334456777888887776665554 4555555554322
Q ss_pred h--HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001307 263 P--RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1103)
Q Consensus 263 ~--~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~ 340 (1103)
. ..-.-+++.+++.+-.-+. ..++.+|...++.+..+-. .|. .++-.|++.+++-++.++.+..+
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds----~P~--~~m~~yl~~~ldGLf~~LsD~s~----- 222 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDS----VPD--LEMISYLPSLLDGLFNMLSDSSD----- 222 (675)
T ss_pred ccccccccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhc----CCc--HHHHhcchHHHHHHHHHhcCCcH-----
Confidence 1 1102245667776655443 2467888887777766654 443 34456889999999999875432
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCC--c-chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001307 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGN--T-IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1103)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1103)
+.+.....+++.+-.....+ . -.+..++.+...+++++...+..|+.++..+..-.+...-.++.
T Consensus 223 ------------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s 290 (675)
T KOG0212|consen 223 ------------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLS 290 (675)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 13444555555544333211 1 12345556666778888999999999999999988888889999
Q ss_pred HHHHHHHhcCCCCCh-hHHHHHHHHHHHhhhhhchhHHh--hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 418 QVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~-~vr~~a~~~L~~l~~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
.++..+++++.|..+ .++..+...-+.+...+...... --+..++..+.+.+.+ .....|.++...+..+....+.
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcc
Confidence 999999999998877 47877776665555544432211 1355899999999998 7888999999999999999887
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 495 ~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
+ +..+.+++...|++.+.+++..|...+++.++.++....
T Consensus 370 q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 370 Q-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred h-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 6 568999999999999999999999999999999987644
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1e-10 Score=123.91 Aligned_cols=412 Identities=16% Similarity=0.156 Sum_probs=287.2
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHccchHHH
Q 001307 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1103)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~-~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1103)
.+..++.|. .-+-|++|.--+-.++..+-...+.. .+..+++ .......+++...|++++-.+...+-..+..-
T Consensus 4 ~i~r~ltdK-lYekRKaaalelEk~Vk~l~~~~~~~----~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~ 78 (675)
T KOG0212|consen 4 SIARGLTDK-LYEKRKAAALELEKLVKDLVNNNDYD----QIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD 78 (675)
T ss_pred HhhhhhhhH-HHHHHHHHHHHHHHHHHHHHccCcHH----HHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc
Confidence 355677776 67778888888888877653333333 3334444 33444556665566677666655543333333
Q ss_pred HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 001307 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1103)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ 346 (1103)
.+|+..+++..+..+. +.+..+|..|++.+..+++..+ .....+.+.++..+.....+.+.
T Consensus 79 ~~Y~~~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~----------- 139 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFS--DQDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ----------- 139 (675)
T ss_pred HHHHHHhhHHHHHhcc--CccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc-----------
Confidence 4477777777777764 4578899999999999998521 22345778888888777655421
Q ss_pred ccccCCCchhhHHHHHHHHHHHcCC----CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001307 347 EDAGESSNYSVGQECLDRLAIALGG----NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1103)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1103)
..+-+.+.++++....-. ..-++.++|.+.+.+...++..|..-+.|+..+-...+-.+-.|++.+++.
T Consensus 140 -------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldG 212 (675)
T KOG0212|consen 140 -------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDG 212 (675)
T ss_pred -------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHH
Confidence 122466788888765432 234688999999999988999999999999988776666778999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchH
Q 001307 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1103)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~ 502 (1103)
++..|.|+++.||..+-.+++.+.......-..--.+..++.++..+++ +++.++..|...+..|+...+.+ +.+|+.
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s 290 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLS 290 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhh
Confidence 9999999999999999999999887765433111467889999999999 89999999999999999988866 679999
Q ss_pred HHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhhhhhHh---hHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 503 GIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQK---YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 503 ~ll~~L~~~l~~~~~-~v~~~al~al~~l~~~~~~~~~~---~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
.++..++.++.+... .+++.+...-+.+...++..... -+..++..+...+.. +....|..+++.+..+-..
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHhh
Confidence 999999999988766 47776666655555444433221 334678888777754 3345688888888888887
Q ss_pred hChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhc
Q 001307 579 VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~ 643 (1103)
.+ ..+..+..++...+++..+ +.+|.+..-.+..++.+ +.+.=.|.+-..+..+++..
T Consensus 367 ~p-~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~lla~i---~~s~~~~~~~~fl~sLL~~f 424 (675)
T KOG0212|consen 367 AP-GQLLVHNDSIFLTLLKTLS---DRSDEVVLLALSLLASI---CSSSNSPNLRKFLLSLLEMF 424 (675)
T ss_pred Cc-chhhhhccHHHHHHHHhhc---CchhHHHHHHHHHHHHH---hcCcccccHHHHHHHHHHHH
Confidence 77 5577788888888887443 23444444444444444 44443433333444444444
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.53 E-value=1.4e-10 Score=137.72 Aligned_cols=491 Identities=18% Similarity=0.238 Sum_probs=323.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~--~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
+++.++++... .+...|+.+-..|-.+... +.+......+..+. +.+...|+++-..+......+ ++
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~---------~~ 75 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHED---------PE 75 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTS---------HH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcc---------hh
Confidence 34555555444 4666777777766554332 23322233334333 889999999999998876554 66
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch
Q 001307 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~ 179 (1103)
..-.+-+.+.+-+.+ +++.+|..+-.+++.+... .-.+.+++.+.+++.++++.+|..|+.++..+....++.+.
T Consensus 76 ~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 76 LLILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 566677777788887 6999999888888887643 35688899999999999999999999999999988766533
Q ss_pred hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001307 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1103)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1103)
.. +++.+.+.+.|+ ++.|+.+|+.++..+ .. ....+..+++.+.+.+.+.+...++..+...++++..++
T Consensus 151 ~~---~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~-----~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 DE---LIPKLKQLLSDK-DPSVVSAALSLLSEI-KC-----NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp GG---HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC-----THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HH---HHHHHhhhccCC-cchhHHHHHHHHHHH-cc-----CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 32 678888888887 899999999999888 21 223334778888888888888889999999999999887
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001307 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1103)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w 339 (1103)
...+..... ..+++.+...+. +.+..++..++.++..+.. ..+.+..+++.+...+...+
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~-----------~~~~~~~~~~~L~~lL~s~~----- 280 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSP-----------SPELLQKAINPLIKLLSSSD----- 280 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSS-----------SHHHHHHHHHHHHHHHTSSS-----
T ss_pred cCChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhc-----------chHHHHhhHHHHHHHhhccc-----
Confidence 766554421 234444444333 2356677666666664433 12356778888887776321
Q ss_pred ccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001307 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1103)
Q Consensus 340 ~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1103)
...+..+.+++..++...+ ..+. .....+.-...+++...|..++..+..++.. .....+
T Consensus 281 ------------~nvr~~~L~~L~~l~~~~~-~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~I 340 (526)
T PF01602_consen 281 ------------PNVRYIALDSLSQLAQSNP-PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEI 340 (526)
T ss_dssp ------------HHHHHHHHHHHHHHCCHCH-HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHH
T ss_pred ------------chhehhHHHHHHHhhcccc-hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhH
Confidence 1234456666666654431 1222 1111222233377888999999999888764 455667
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccccc
Q 001307 420 LSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1103)
Q Consensus 420 ~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1103)
++.+...+.+. ++.+|..+...++.++....+. ....+..+++.+.. ....+...+...+..++...+.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-----~~~~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~~---- 410 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-----AEWYVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNPE---- 410 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----HHHHHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHSTT----
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----HHHHHHHHHHhhhh-ccccccchHHHHHHHHhhcChh----
Confidence 78777788544 7789999999999999887543 34556666666665 5567778888888888876442
Q ss_pred CchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 499 ~~l~~ll~~L~~~l~~-~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
....++..+...+.+ ..+.++..+++++|..+..... .. ....++..+.+.+. .+...+|..++.++..+..
T Consensus 411 -~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~----~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 411 -LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFI----EESPEVKLQILTALAKLFK 483 (526)
T ss_dssp -THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHT----TSHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHh
Confidence 234556777777765 4577888888888887766554 00 23334444444432 2344578888888888876
Q ss_pred hhChhhhhhhHHHHHHHHHHH
Q 001307 578 AVGKDKFRDDAKQVMEVLMSL 598 (1103)
Q Consensus 578 ~~~~~~~~~~~~~i~~~l~~l 598 (1103)
..+.....+ .+++.+..+
T Consensus 484 ~~~~~~~~~---~i~~~~~~~ 501 (526)
T PF01602_consen 484 RNPENEVQN---EILQFLLSL 501 (526)
T ss_dssp HSCSTTHHH---HHHHHHHCH
T ss_pred hCCchhhHH---HHHHHHHHH
Confidence 655322322 455555443
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.49 E-value=1.6e-10 Score=137.06 Aligned_cols=482 Identities=20% Similarity=0.262 Sum_probs=321.9
Q ss_pred hCCChH-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCChhHHHHHHHHHHHhcccCCCCc
Q 001307 17 LGPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1103)
Q Consensus 17 ~~~d~~-~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~~~L~~~i~~~~~~~ 92 (1103)
+|.|.. .+.+++..+.+.|...|+-+.-++..+...+|+.. ....+-+. +++++.+|.+|...+-+..
T Consensus 36 ~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------- 107 (526)
T PF01602_consen 36 LGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR------- 107 (526)
T ss_dssp TT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------
T ss_pred cCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------
Confidence 344444 46677777788899999999999999888777743 33333333 2789999999999998854
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcch-hHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
+++..+.+...+.+.+.+ +++.||+.++.++..+.+. .| +..+. +++.+.+++.++++.++..|+.++..+
T Consensus 108 ----~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~-~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i- 179 (526)
T PF01602_consen 108 ----TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRK-DP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI- 179 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHH-CH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-
T ss_pred ----ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhcc-CH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-
Confidence 367777888888888887 6899999999999999885 33 34344 799999999999999999999999988
Q ss_pred hhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHH
Q 001307 172 QYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1103)
Q Consensus 172 ~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~ 251 (1103)
+..++......+.++..+.+.+... ++-.+..+++.+..+.... ...... ..+++.+...+++.++.+...+
T Consensus 180 ~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~-----~~~~~~--~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 180 KCNDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME-----PEDADK--NRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HCTHHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS-----HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCC-----hhhhhH--HHHHHHHHHHhhccccHHHHHH
Confidence 3222222245667777777777886 8888888888887665431 111100 2345555555556678888888
Q ss_pred HHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001307 252 LELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1103)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1103)
+.++..+..... .+..+++.+..++. +.+.++|..+++.+..++.. .+. .+......+ ..+.
T Consensus 252 ~~~i~~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~---~~~-------~v~~~~~~~-~~l~ 313 (526)
T PF01602_consen 252 IRLIIKLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQS---NPP-------AVFNQSLIL-FFLL 313 (526)
T ss_dssp HHHHHHHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCH---CHH-------HHGTHHHHH-HHHH
T ss_pred HHHHHHhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHHHHhhcc---cch-------hhhhhhhhh-heec
Confidence 888887665433 44556666666665 45788999999999988873 221 111111111 1121
Q ss_pred CCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHH
Q 001307 332 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK 410 (1103)
Q Consensus 332 ~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~ 410 (1103)
.. + +...+..+.+.+..++.. .-...+++.+..++ ...+...|..++..++.+++..+
T Consensus 314 ~~-~---------------d~~Ir~~~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~- 372 (526)
T PF01602_consen 314 YD-D---------------DPSIRKKALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP- 372 (526)
T ss_dssp CS-S---------------SHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG-
T ss_pred CC-C---------------ChhHHHHHHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC-
Confidence 11 0 122344455555555533 33444666666666 34477799999999998887653
Q ss_pred HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHh
Q 001307 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
+.....++.++..+...+..+...+...+..+....+. ....++..+++.+.+...+.++..++|.++.+.+
T Consensus 373 ---~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~-----~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 373 ---PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE-----LREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp ---SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT-----THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred ---chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh-----hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 34455666666677777778888888888777655322 2345677777777665678899999999999988
Q ss_pred cCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHH
Q 001307 491 NCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSME 570 (1103)
Q Consensus 491 ~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~ 570 (1103)
.... .. ....++..+...+...+..+|..++.++..+....+.. ...+.+.+.+.+.... ++.+..+|.+|.+
T Consensus 445 ~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~~--~s~~~evr~Ra~~ 517 (526)
T PF01602_consen 445 LIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLATE--DSSDPEVRDRARE 517 (526)
T ss_dssp HHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHHH--S-SSHHHHHHHHH
T ss_pred cccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhcc--CCCCHHHHHHHHH
Confidence 7764 22 56677777777777777889999999999998765531 1123555655555442 1335668999988
Q ss_pred HHHHHH
Q 001307 571 CISLVG 576 (1103)
Q Consensus 571 ~l~~i~ 576 (1103)
.+..+-
T Consensus 518 y~~ll~ 523 (526)
T PF01602_consen 518 YLRLLN 523 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887664
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.6e-06 Score=101.56 Aligned_cols=773 Identities=13% Similarity=0.108 Sum_probs=366.5
Q ss_pred HHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHccchHHHHHh---HHHHHHHHHHh
Q 001307 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELAGTEPRFLRRQ---LVDVVGSMLQI 280 (1103)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~l~~~l~~~ 280 (1103)
..+|.-++.+.+.+- .+.-++.+++.+...+. +.+..++..++.||..+.......-..+ ...++..+.-.
T Consensus 72 ~~LL~li~~~VPs~v----L~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~ 147 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPV----LQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFA 147 (1176)
T ss_pred HHHHHHHHhhCCHHH----HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHH
Confidence 456666666665332 33334445555555554 6788899999999998876532211111 11222222222
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHH
Q 001307 281 AEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE 360 (1103)
Q Consensus 281 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~ 360 (1103)
+ +..+.+|..|...+..+......+| ..-.|....+...|+..+...--. . +..+..+ ...
T Consensus 148 ~---h~~pkvRk~a~~~i~~VL~~p~~~~---~~~HpA~~~vak~cl~~~e~~~~~---------a---~~t~v~~-~L~ 208 (1176)
T KOG1248|consen 148 A---HKKPKVRKAAQRGIAAVLKGPPFAP---DAEHPASLSVAKFCLALIESKLGS---------A---ENTTVLR-SLM 208 (1176)
T ss_pred h---cCchHHHHHHHHHHHHHHcCCCCCc---cccchHHHHHHHHHHHHHHhhhch---------H---HHHHHHH-HHH
Confidence 2 4568999999999998887322222 222333444444444443221000 0 0000000 111
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhcCC---CCChhHHH
Q 001307 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFR---DPHPRVRW 436 (1103)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~---d~~~~vr~ 436 (1103)
.|..+...+| ...+..+-..+.......+...+..++.++..+....+.... .....++..+...-- |.-..+.+
T Consensus 209 Ll~~~~~~~p-~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W 287 (1176)
T KOG1248|consen 209 LLRDVLSTFP-RPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAW 287 (1176)
T ss_pred HHHHhhccCC-HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHH
Confidence 2222222222 233333334444444455677888888888888766554222 222344454444332 22222222
Q ss_pred HHHH--HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHH-HHHHhh
Q 001307 437 AAIN--AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK-LLVLLQ 513 (1103)
Q Consensus 437 ~a~~--~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~-L~~~l~ 513 (1103)
.... +...++. ...+..-...+.+++.++..+.. ..+.+...+..++..+...+.. +.+.+... +..+++
T Consensus 288 ~~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s-~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 288 LKVLNEAHDILAT-LQEEKALQALPRLFSLFFTILES-LIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhc-ccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHc
Confidence 1111 1112221 12222235677888888887766 7778888888888888766543 44445444 555555
Q ss_pred cCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHH----
Q 001307 514 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK---- 589 (1103)
Q Consensus 514 ~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~---- 589 (1103)
-....+-..++..+..+...+|....||+-..+..+... .. .++...+...=+|+|.-.+++|++.+...++
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~l-r~---~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~ 436 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDL-RA---SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLH 436 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHh-hc---CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcc
Confidence 556677788999999999999998888887777766553 11 1222234455678898888999776543321
Q ss_pred ---------HHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcC--------Cccc-chhhhhHHHHHhcccCCCccc
Q 001307 590 ---------QVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ--------DFLP-YMSVVMPPLLQSAQLKPDVTI 651 (1103)
Q Consensus 590 ---------~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~p-~l~~i~~~ll~~~~~~~~~~~ 651 (1103)
++++++....... .+ .+....|--++..+.. +..+ .+..+.-.|...+ |++-.
T Consensus 437 ~~s~~~~RsWLLPvLR~~i~~A-----~L-a~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LL---P~FC~ 507 (1176)
T KOG1248|consen 437 AESLSFTRSWLLPVLRDYIIGA-----SL-AFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLL---PGFCN 507 (1176)
T ss_pred ccccccchhHhHHHHHHhhccC-----cH-HHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhC---hhhhC
Confidence 2334333311100 00 0111112222222211 1111 2222222222222 21110
Q ss_pred cCCCCCccccCCCCcccch-hhcCCcee--eeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccc--cCC
Q 001307 652 TSADSDNEIEDSDDDSMET-ITLGDKRI--GIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF--YFH 726 (1103)
Q Consensus 652 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~--~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~--~~~ 726 (1103)
.. -|.++ +..-.... .+.... +-+..-|..|..++...... ++ ...
T Consensus 508 ~P------------~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~----------------~~a~e~~ 558 (1176)
T KOG1248|consen 508 YP------------VDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPS----------------SDAAENK 558 (1176)
T ss_pred CC------------ccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCc----------------chHHHHH
Confidence 00 00000 00000000 000000 11111222222222221000 00 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH------------HHHHHH---HccCCcHHHHHHHHHH
Q 001307 727 EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFII------------PALVEA---LHKEPDTEICASMLDS 791 (1103)
Q Consensus 727 ~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~------------~~l~~~---~~~~~~~~~~~~~~~~ 791 (1103)
+-+-..|-..|+-++.........| +.......+.+..+. ..+... ...+.+..+..-....
T Consensus 559 e~~s~~AknfL~~lfn~ytq~~~~~---~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~s 635 (1176)
T KOG1248|consen 559 EVLSNDAKNFLPRLFNVYTQTVAAG---RKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLS 635 (1176)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCccc---cccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHH
Confidence 1111222223333332221100000 000001111111110 000011 1111112222222222
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-
Q 001307 792 LNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKT- 870 (1103)
Q Consensus 792 l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~- 870 (1103)
+-+++...++..+.+++..++ .+.....+ .....+...+.++|..+...
T Consensus 636 lLdl~~~~a~~~~e~~vs~l~-~v~~~~e~-----------------------------~~~~~vQkK~yrlL~~l~~~~ 685 (1176)
T KOG1248|consen 636 LLDLLIALAPVQTESQVSKLF-TVDPEFEN-----------------------------SSSTKVQKKAYRLLEELSSSP 685 (1176)
T ss_pred HHHHHHhhhccccchhHHHHH-HhhHHhhc-----------------------------cccHHHHHHHHHHHHHHhcCC
Confidence 333333344444445444444 11111111 11234566677888888766
Q ss_pred hhhc-hhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHH-H----------HHHHHHHH
Q 001307 871 FKAA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLL-E----------AAVYGLGV 938 (1103)
Q Consensus 871 ~~~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~-~----------~a~~~lg~ 938 (1103)
.|.. ...++..+.+.+.+-.+ +.+...+...+.|+..+++.++.....++...+|-++ . +|.-+|-.
T Consensus 686 s~~~~~~q~i~~I~n~L~ds~q-s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~ 764 (1176)
T KOG1248|consen 686 SGEGLVEQRIDDIFNSLLDSFQ-SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVF 764 (1176)
T ss_pred chhhHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHH
Confidence 1122 23455557777766653 3345567788999999999998555555655555433 2 44444444
Q ss_pred HH--hhcCC----CchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCCC---HhhHHHHHHhcCCC
Q 001307 939 CA--EFGGS----VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSID---AAQVVPAWLNCLPI 1009 (1103)
Q Consensus 939 l~--~~~~~----~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~---~~~~l~~~l~~lp~ 1009 (1103)
++ ....+ .....+...+..|..-+... ...++-..+-+++.++.-..+-++ +.+++..+..+|--
T Consensus 765 i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd------~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s 838 (1176)
T KOG1248|consen 765 IGAIQSSLDDGNEPASAILNEFLSIISAGLVGD------STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS 838 (1176)
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHHhhhccc------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc
Confidence 43 22211 11223334444444333222 222222227888888877655542 45566655555532
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc
Q 001307 1010 KGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSS 1089 (1103)
Q Consensus 1010 ~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1089 (1103)
...+-+..+.+++..++..-+..++.+ |++.++..+..... . .+...+.++..++..|...|+.. .+=+-
T Consensus 839 -~sreI~kaAI~fikvlv~~~pe~~l~~---~~~~LL~sll~ls~-d--~k~~~r~Kvr~LlekLirkfg~~---eLe~~ 908 (1176)
T KOG1248|consen 839 -NSREIAKAAIGFIKVLVYKFPEECLSP---HLEELLPSLLALSH-D--HKIKVRKKVRLLLEKLIRKFGAE---ELESF 908 (1176)
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHhh---hHHHHHHHHHHHHH-h--hhHHHHHHHHHHHHHHHHHhCHH---HHHhh
Confidence 344566778899999998877777665 88888887766442 1 25788999999999999999643 44445
Q ss_pred CCHHHHHHHHhh
Q 001307 1090 LQPQQQLALQSI 1101 (1103)
Q Consensus 1090 l~~~~~~~l~~~ 1101 (1103)
+|.+.+..|.++
T Consensus 909 ~pee~~klL~nI 920 (1176)
T KOG1248|consen 909 LPEEDMKLLTNI 920 (1176)
T ss_pred CHHHHHHHHHHH
Confidence 567777667654
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=3.2e-08 Score=116.09 Aligned_cols=424 Identities=13% Similarity=0.122 Sum_probs=266.0
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC
Q 001307 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1103)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~ 197 (1103)
...+..+-.+|+.+... .....+++.+..++++++...|..+...+....+.-++. .--.++.|.+-++++
T Consensus 47 ~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaINtl~KDl~d~- 117 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAVNTFLQDTTNS- 117 (746)
T ss_pred HHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHHHHHHHHcCCC-
Confidence 33455555566655442 366788999999999999999988877777666544432 334466778888887
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 277 (1103)
++.+|-.|+++++.+-. ..+++.++..+.+++.+.++-+|+.|.-++..+....++.+.. ..+++.+
T Consensus 118 Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L 184 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDL 184 (746)
T ss_pred CHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHH
Confidence 99999999998886542 3566788888889999999999999999999998877765421 1122333
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh
Q 001307 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1103)
Q Consensus 278 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~ 357 (1103)
..++. |.+..+...|+..+..+.+ ..|.... .....+..++..+.+. .+|. .
T Consensus 185 ~~LL~--D~dp~Vv~nAl~aL~eI~~---~~~~~l~----l~~~~~~~Ll~~L~e~---~EW~----------------Q 236 (746)
T PTZ00429 185 VELLN--DNNPVVASNAAAIVCEVND---YGSEKIE----SSNEWVNRLVYHLPEC---NEWG----------------Q 236 (746)
T ss_pred HHHhc--CCCccHHHHHHHHHHHHHH---hCchhhH----HHHHHHHHHHHHhhcC---ChHH----------------H
Confidence 33343 4578899999999988877 3342211 2223333333333221 1232 1
Q ss_pred HHHHHHHHHHHcCC-CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc-HHHHHHhHHHHHHHHHhcCCCCChhHH
Q 001307 358 GQECLDRLAIALGG-NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AKVMVKNLEQVLSMVLNSFRDPHPRVR 435 (1103)
Q Consensus 358 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr 435 (1103)
...|+.+....+. +.-...++..+...+++.+.-+..+|+.++-.+...+ ++.+...+..+.+.++.. ...++.+|
T Consensus 237 -i~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiq 314 (746)
T PTZ00429 237 -LYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQ 314 (746)
T ss_pred -HHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHH
Confidence 2455555543331 1223346666777788888888888888887776543 233333444454555544 45778999
Q ss_pred HHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC
Q 001307 436 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG 515 (1103)
Q Consensus 436 ~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~ 515 (1103)
..++..+..+....+.-+ . .-+..++-..+| +. .|+......|..++..- -...++..|.....+.
T Consensus 315 yvaLr~I~~i~~~~P~lf-~----~~~~~Ff~~~~D-p~-yIK~~KLeIL~~Lane~-------Nv~~IL~EL~eYa~d~ 380 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLL-R----TNLDSFYVRYSD-PP-FVKLEKLRLLLKLVTPS-------VAPEILKELAEYASGV 380 (746)
T ss_pred HHHHHHHHHHHHHCHHHH-H----HHHHhhhcccCC-cH-HHHHHHHHHHHHHcCcc-------cHHHHHHHHHHHhhcC
Confidence 999999988876554322 2 224445555666 44 58888888888776432 3456777788888888
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHH
Q 001307 516 KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1103)
Q Consensus 516 ~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l 595 (1103)
+..++..++.+||.++...+. ..+.++..|.+++... .+ +...++..+..+.+... +.+ ++..+
T Consensus 381 D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~--~~---~v~e~i~vik~IlrkyP-~~~------il~~L 444 (746)
T PTZ00429 381 DMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR--PE---LLPQVVTAAKDIVRKYP-ELL------MLDTL 444 (746)
T ss_pred CHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC--ch---hHHHHHHHHHHHHHHCc-cHH------HHHHH
Confidence 889999999999999976554 4556677777776431 11 23345555555554433 211 23333
Q ss_pred HHHhc-CCCCCCCchhhHHHHHHHHHHhHh
Q 001307 596 MSLQG-SQMETDDPTTSYMLQAWARLCKCL 624 (1103)
Q Consensus 596 ~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1103)
..... ..+ .+...+..++-.+|..+...
T Consensus 445 ~~~~~~~~i-~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 445 VTDYGADEV-VEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred HHhhccccc-ccHHHHHHHHHHHHhhHhhH
Confidence 32111 111 12235666666777766543
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.1e-11 Score=127.46 Aligned_cols=359 Identities=16% Similarity=0.203 Sum_probs=252.6
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhH-HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001307 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR-FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
+.....+.+. +...+..+...+..+...-..+..... ....+|.+++.+. .+.++..+..+..+|..++......
T Consensus 69 ~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~---~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 69 ELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS---RDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc---cCCChhHHHHHHHHHHHHhcCchhh
Confidence 3444455554 677788899888888876433211111 1234444444433 2456889999999999999866554
Q ss_pred HHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccC
Q 001307 266 LRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSA 342 (1103)
Q Consensus 266 ~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~~~ 342 (1103)
..-.++ ..++.++.++. +.++.++.+|+..++.++. ..|. +| .++ ..+++.++..+....
T Consensus 145 T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIag---ds~~-~R---d~vl~~g~l~pLl~~l~~~~-------- 207 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAG---DSPD-CR---DYVLSCGALDPLLRLLNKSD-------- 207 (514)
T ss_pred ccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhcccc---CChH-HH---HHHHhhcchHHHHHHhcccc--------
Confidence 433332 34555566654 3578999999999999987 3442 33 232 235555665554321
Q ss_pred CCCCccccCCCchhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-H
Q 001307 343 ETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-Q 418 (1103)
Q Consensus 343 ~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~ 418 (1103)
..+..+.+..+|..|++.-.+. ..+..++|.+..++.+.|..+..-|+++++.++.+..+.+.-.++ .
T Consensus 208 --------~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 208 --------KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred --------chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 1224456778888888765222 345568888999999999999999999999999999887766665 6
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccccc
Q 001307 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1103)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1103)
+++.+...|..+++.|+..|+.++|.++.......+.-.-...+|.+...+...+...+++.|||+++++..+.... +.
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q-iq 358 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ-IQ 358 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH-HH
Confidence 88999999999999999999999999887655444333456788888888884256668999999999999865432 33
Q ss_pred Cc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHH
Q 001307 499 PY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1103)
Q Consensus 499 ~~-l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i 575 (1103)
.. -..+++.|+.++++....+|+.|..+|+.+......+..+|+ ..+++.+...|.- .+ ..+-..+++++..+
T Consensus 359 aVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D---~~ii~v~Ld~l~ni 434 (514)
T KOG0166|consen 359 AVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD---VKIILVALDGLENI 434 (514)
T ss_pred HHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC---hHHHHHHHHHHHHH
Confidence 22 236788999999999999999999999999887766667776 3488888888732 22 22345678888877
Q ss_pred HHhh
Q 001307 576 GMAV 579 (1103)
Q Consensus 576 ~~~~ 579 (1103)
-...
T Consensus 435 l~~~ 438 (514)
T KOG0166|consen 435 LKVG 438 (514)
T ss_pred HHHH
Confidence 6544
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.6e-11 Score=130.13 Aligned_cols=360 Identities=18% Similarity=0.223 Sum_probs=245.3
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh-hhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~-~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1103)
.+...+.+.|.+...+..+...+..+..... +.+.. ....++|.|..++....++.++..|..+|.+++..-......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4555566667776666666666666654321 11111 123577888888874447999999999999998753211111
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 001307 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1103)
Q Consensus 223 ~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~ 300 (1103)
-.-..-+|. +..++.+++.+++..++..|+.++...+ .++.++- .+++.++.++...+ .......+...+..
T Consensus 148 vv~agavp~----fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDAGAVPI----FIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSN 221 (514)
T ss_pred cccCCchHH----HHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 001133444 4556678999999999999999997654 3444433 34566666664432 23566778899999
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCc----chH
Q 001307 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT----IVP 376 (1103)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~----~~~ 376 (1103)
+|+.+.-.|. -..+..++|.+...+...+.+ ...-+..++..|+..-. +. +-.
T Consensus 222 lcrgk~P~P~-----~~~v~~iLp~L~~ll~~~D~~-----------------Vl~Da~WAlsyLsdg~n-e~iq~vi~~ 278 (514)
T KOG0166|consen 222 LCRGKNPSPP-----FDVVAPILPALLRLLHSTDEE-----------------VLTDACWALSYLTDGSN-EKIQMVIDA 278 (514)
T ss_pred HHcCCCCCCc-----HHHHHHHHHHHHHHHhcCCHH-----------------HHHHHHHHHHHHhcCCh-HHHHHHHHc
Confidence 9996431221 135677888888777554211 22335556666653321 11 112
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHH
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~ 454 (1103)
-+.|.+..++.+.+...+..|+.++|.++.|........+. ..+|.+...+. .+...+|..|||++++++..-+.+++
T Consensus 279 gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ 358 (514)
T ss_pred cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH
Confidence 25577778888888999999999999998887664444333 57788888887 66777999999999999988777775
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
.-.-..++|.|+..++. ...++|+.|+|++.+++....++.+ .|+ ..+++.+..+|.-.+..+...++.++..+-.
T Consensus 359 aVida~l~p~Li~~l~~-~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 359 AVIDANLIPVLINLLQT-AEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHHHcccHHHHHHHHhc-cchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 55667899999999998 7789999999999999988775532 443 2357777777777777778888888888876
Q ss_pred hhh
Q 001307 533 SSQ 535 (1103)
Q Consensus 533 ~~~ 535 (1103)
..+
T Consensus 437 ~~e 439 (514)
T KOG0166|consen 437 VGE 439 (514)
T ss_pred HHH
Confidence 544
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.9e-07 Score=101.01 Aligned_cols=701 Identities=15% Similarity=0.181 Sum_probs=345.8
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHhcccC-CCCcc---
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES-AKSISKKLCDTVSELASNILP-ENGWP--- 142 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~-~~~vr~~~~~~i~~ia~~~~~-~~~w~--- 142 (1103)
+++|.+|.-|--.|+..=.. ...--.+++.+.++. +..+|..++-......+..|. ...-|
T Consensus 16 ~pdps~rk~aEr~L~~~e~q--------------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ--------------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred CCCCccCchHHHHHHHhccC--------------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 66799999999989873211 112235677777654 778888888877777764332 11111
Q ss_pred -----hhH-HHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhc
Q 001307 143 -----ELL-PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1103)
Q Consensus 143 -----~ll-~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1103)
+.+ ..+..++-+.....+..-..+++.+.++ .|....+++++-+...++.. +-.+-.+.+....++...+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~---DFP~kWptLl~dL~~~ls~~-D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR---DFPDKWPTLLPDLVARLSSG-DFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc---ccchhhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHhc
Confidence 222 2333333344344444444555555543 24447889999999999986 7777667777777777665
Q ss_pred CCcch-HhH----------HHhhHHHHHHHHHHHHh--CCCHHHHHHHHH-------HHHHHH-ccchHHHHHhHHHHHH
Q 001307 217 TSSAD-RDR----------FQDLLPLMMRTLTESLN--NGNEATAQEALE-------LLIELA-GTEPRFLRRQLVDVVG 275 (1103)
Q Consensus 217 ~~~~~-~~~----------~~~~ip~ll~~l~~~l~--~~~~~~~~~~~~-------~l~~l~-~~~~~~~~~~~~~l~~ 275 (1103)
..... ... |..-+..++.......+ +.+.......+. .+-.+. ..-|++|..++...++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 42211 111 11111122222222222 122222222222 222222 2337899999999888
Q ss_pred HHHHhhcC--C-----Ccc----hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 001307 276 SMLQIAEA--E-----SLE----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1103)
Q Consensus 276 ~l~~~~~~--~-----~~~----~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~ 344 (1103)
.+.+.++. + +.+ +.+|...++.+.-.+. +.+ ..+.+|++.++......+.....++.
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~---kYe---Eef~~fl~~fv~~~W~LL~~~s~~~k------ 305 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYAT---KYE---EEFQPFLPDFVTATWNLLVSTSPDTK------ 305 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHH---hhH---HHHHhhHHHHHHHHHHHHHhcCCCcc------
Confidence 88776631 1 111 1235555555554444 222 23456777777666555554432211
Q ss_pred CCccccCCCchh-hHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001307 345 EDEDAGESSNYS-VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1103)
Q Consensus 345 e~ed~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1103)
++ ....++.-|. ...+ +..++.+..- +.++..+
T Consensus 306 ----------yD~Lvs~Al~FLt-----------------~V~~----r~~y~~~F~~---------------~~vl~~i 339 (960)
T KOG1992|consen 306 ----------YDYLVSKALQFLT-----------------SVSR----RPHYAELFEG---------------ENVLAQI 339 (960)
T ss_pred ----------HHHHHHHHHHHHH-----------------HHHh----hhhhHhhhcc---------------hHHHHHH
Confidence 11 1111111111 1110 0111111000 0111111
Q ss_pred HhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcc-hHHHHHHHHHHHHhcCCcccccCchH
Q 001307 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTPEILTPYLD 502 (1103)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~~~l~~~l~ 502 (1103)
.....=++-..|..-. +-+-+..+..+-+-+.- .+.. -|..||..+..+++.+... +.+.+.
T Consensus 340 ~e~VvlpN~~lR~eDe---------------ElFED~pleYiRRDlEG-sDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~ 402 (960)
T KOG1992|consen 340 CEKVVLPNLILREEDE---------------ELFEDNPLEYIRRDLEG-SDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFS 402 (960)
T ss_pred HHhhcccccccchhhH---------------HHhccCHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHhcch-hHHHHH
Confidence 1111111111121110 11222244444444544 3333 3578889999999998644 556677
Q ss_pred HHHHHHHHHhh-c--CChhHHHHHHHHHHHHHHhhhh------------hhHhhH-hhhhHHHHHHHhhcCCcccchhhh
Q 001307 503 GIVSKLLVLLQ-N--GKQMVQEGALTALASVADSSQE------------HFQKYY-DAVMPFLKAILVNATDKSNRMLRA 566 (1103)
Q Consensus 503 ~ll~~L~~~l~-~--~~~~v~~~al~al~~l~~~~~~------------~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~ 566 (1103)
.-++.++.-.. + .+..-+..++..+.+++...+. +...|+ ..+.|.|. .....+...+|.
T Consensus 403 ~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~----s~~vn~~pilka 478 (960)
T KOG1992|consen 403 SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLL----SPNVNEFPILKA 478 (960)
T ss_pred HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhc----cCccccccchhh
Confidence 66666665333 2 3456677888888888765332 112232 33344333 222334556777
Q ss_pred HHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcC---------CcccchhhhhH
Q 001307 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ---------DFLPYMSVVMP 637 (1103)
Q Consensus 567 ~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~p~l~~i~~ 637 (1103)
.+++-+-..-..+|++..-.+++.++..+ .. ....+.+|+..++..+-.+.++ ++.||+..++.
T Consensus 479 ~aIKy~~~FR~ql~~~~lm~~~p~li~~L----~a---~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~ 551 (960)
T KOG1992|consen 479 DAIKYIYTFRNQLGKEHLMALLPRLIRFL----EA---ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLT 551 (960)
T ss_pred cccceeeeecccCChHHHHHHHHHHHHhc----cC---cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHH
Confidence 77777666666667654444444444332 21 1223667777788777665544 47788888888
Q ss_pred HHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHh
Q 001307 638 PLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTL 717 (1103)
Q Consensus 638 ~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l 717 (1103)
.+++.++.... .+-+| -.+++..+.....+...|+.+.++..+
T Consensus 552 nLf~a~s~p~~-----------------~Eney--------------------lmKaImRii~i~~~~i~p~~~~~l~~L 594 (960)
T KOG1992|consen 552 NLFKALSLPGK-----------------AENEY--------------------LMKAIMRIISILQSAIIPHAPELLRQL 594 (960)
T ss_pred HHHHhccCCcc-----------------cccHH--------------------HHHHHHHHHHhCHHhhhhhhhHHHHHH
Confidence 88877755321 11122 123555555555666666666555554
Q ss_pred cccc----cccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Q 001307 718 VPLL----KFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLN 793 (1103)
Q Consensus 718 ~~~l----~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 793 (1103)
...+ +.+.++..-..-+++++-++...+. .++..+..+-..++|.+...+.+| =.+..--++.-++
T Consensus 595 teiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~---------~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla 664 (960)
T KOG1992|consen 595 TEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK---------ANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLA 664 (960)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc---------cCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4332 2233445555666666666655422 245556666677777766666554 3345556677777
Q ss_pred HHHHHhCCCCCHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHH
Q 001307 794 ECIQISGPLLDEGQVRSIV---------------DEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFD 858 (1103)
Q Consensus 794 ~~~~~~g~~~~~~~~~~~~---------------~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~ 858 (1103)
.++...+.... +.+..++ ..+..++.....+.. +... ..+..+.=-+....-.. ....=+
T Consensus 665 ~lve~~~~~ip-~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~-~~~~-~~~~l~~iLGifqkLia--Ska~Dh 739 (960)
T KOG1992|consen 665 VLVEHSSGTIP-DSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGS-QIVE-AADKLSGILGIFQKLIA--SKANDH 739 (960)
T ss_pred HHHHhcCCCCc-hhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCc-hhhc-ccccchhHHHHHHHHhc--Ccccch
Confidence 77777665222 2222222 222223332221110 0000 00000000000000000 000001
Q ss_pred HHHHHHHHHHHHhhh-chhhhHHHHHHhhhhhccCCCCHH-HHHHHHHHHHHHHhhhhhhhhhhHHhH
Q 001307 859 QVGEILGTLIKTFKA-AFLPFFDELSSYLTPMWGKDKTAE-ERRIAICIFDDVAEQCREAALKYYETY 924 (1103)
Q Consensus 859 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~-~r~~a~~~l~~l~~~~~~~~~~~~~~~ 924 (1103)
....++..++...+. ...||+..++-.+.+.++.++++. ++.+.+-+.--.++..|......++.+
T Consensus 740 ~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~I 807 (960)
T KOG1992|consen 740 HGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGI 807 (960)
T ss_pred hHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence 234455555555543 346888888888888887666654 445544444455566555544443333
No 43
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.36 E-value=3.7e-09 Score=122.10 Aligned_cols=539 Identities=14% Similarity=0.114 Sum_probs=333.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHHH---HHHccCCChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLA---HLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~--~p~~~~~~L~---~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
.+..-++.....+.++...+-.++..+..- .| .|...++ +.+.......+|+-+.-.+++..... +
T Consensus 121 ~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~-~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~--------~ 191 (759)
T KOG0211|consen 121 ELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGP-EYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL--------P 191 (759)
T ss_pred hhhhHHHHhccchhHHHHHHHHHhcccchhccch-hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 444445554533445555555565554441 12 1223333 33333556778999999988877553 3
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh
Q 001307 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 177 (1103)
.+........++..+....-..-|..+|.+.+..+...-+..--.++.|...+++++.++.+|.++..-++.++..++..
T Consensus 192 ~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~ 271 (759)
T KOG0211|consen 192 KEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE 271 (759)
T ss_pred hHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHH
Confidence 33333333444555544222334566667766655433222345688899999999999999999999999998887663
Q ss_pred chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001307 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1103)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~ 257 (1103)
.....+.+.+.+...|+ ...||.+|+..+..+...+.... +....+.+.+.+..+++++.++......+.+
T Consensus 272 --~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~------d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 272 --IVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD------DVVKSLTESLVQAVEDGSWRVSYMVADKFSE 342 (759)
T ss_pred --HHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHhcChhHHHHHHHhhhhhh
Confidence 23456778888888897 88999999999999999885432 3333566666777777888888877777777
Q ss_pred HHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001307 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1103)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1103)
+...... ...-...++.....+ ++...+.|.....-...++.... .+.. ..-..+.++|.+.....+...
T Consensus 343 L~~~~~~--~~~~~~~~~~~~~l~--~~~~~e~r~a~a~~~~~l~~~l~-~~~~---~~i~~~~ilp~~~~lv~d~~~-- 412 (759)
T KOG0211|consen 343 LSSAVGP--SATRTQLVPPVSNLL--KDEEWEVRYAIAKKVQKLACYLN-ASCY---PNIPDSSILPEVQVLVLDNAL-- 412 (759)
T ss_pred HHHHhcc--ccCcccchhhHHHHh--cchhhhhhHHhhcchHHHhhhcC-cccc---cccchhhhhHHHHHHHhcccc--
Confidence 7654433 111123334444444 23345555544333333333211 0000 001223445655554433211
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhH
Q 001307 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNL 416 (1103)
Q Consensus 338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l 416 (1103)
..+.+......-+...+|.+..++.++|.+...+++....+|......+..+-.... ..+...-
T Consensus 413 ---------------~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 413 ---------------HVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred ---------------hHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 111111122222233344456666777877778888888888877655543322211 1344556
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
...+|.+...-.|.++++|.+..+.+-+++...+..+ +-+.+-+.+...+.| ....+|.+|...+..+++.+|.+
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~- 552 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSE- 552 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcc-
Confidence 6788888888888999999999999999888776433 233344555566777 67789999999999999999843
Q ss_pred ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 497 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 497 l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
-+...+++.++....+++..+|...+.++..++...|..+ +...++|.+..... +....+|-.+...+..+.
T Consensus 553 --w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~----D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 553 --WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVK----DPVANVRINVAKHLPKIL 624 (759)
T ss_pred --hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhcc----CCchhhhhhHHHHHHHHH
Confidence 4677888888888877788999999999999999998765 44567777777542 334568888888888777
Q ss_pred HhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhH
Q 001307 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1103)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1103)
..+.......++.++.+.+.. +.+-.++-++..+++.+...
T Consensus 625 ~~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 625 KLLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hhcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHHH
Confidence 666543333333333333322 23334666666666655444
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.35 E-value=4.2e-09 Score=121.68 Aligned_cols=565 Identities=15% Similarity=0.187 Sum_probs=351.0
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCC
Q 001307 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (1103)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~ 196 (1103)
+-.-|.....-+..++....+...-.+++|++.+.+ ..+..+...+..=++.+..+.+.. .+...+.+.+.....+.
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~--~~~~~ll~~le~l~~~e 171 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP--EYAHMLLPPLELLATVE 171 (759)
T ss_pred hhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccch--hHHHHhhHHHHhhhHHH
Confidence 444555555566666665555445678999999998 656667777777777777764432 24455666677666775
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-HHHHHhHHHHHH
Q 001307 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVG 275 (1103)
Q Consensus 197 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~ 275 (1103)
...||..++..+..++...+.. .....++| .+.....++-...|..++..+.......+ ..++..+..++
T Consensus 172 -et~vr~k~ve~l~~v~~~~~~~---~~~~~lv~----l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~- 242 (759)
T KOG0211|consen 172 -ETGVREKAVESLLKVAVGLPKE---KLREHLVP----LLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV- 242 (759)
T ss_pred -HHHHHHHHHHHHHHHHHhcChH---HHHHHHHH----HHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH-
Confidence 7889999999999998876432 11233333 23322222222245566777776665554 44444444433
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCch
Q 001307 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY 355 (1103)
Q Consensus 276 ~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~ 355 (1103)
.++. .+..+.+|..+-.-++.++.. .+. ......+++....+..+ +.++.+
T Consensus 243 --~~lc--~d~~~~Vr~~~a~~l~~~a~~---~~~-----~~~~s~v~~~~~~L~~D-----------------dqdsVr 293 (759)
T KOG0211|consen 243 --QSLC--QDDTPMVRRAVASNLGNIAKV---LES-----EIVKSEVLPTLIQLLRD-----------------DQDSVR 293 (759)
T ss_pred --Hhhc--cccchhhHHHHHhhhHHHHHH---HHH-----HHHHhhccHHHhhhhhc-----------------chhhHH
Confidence 3333 245677888777777777663 111 01112233333322211 134566
Q ss_pred hhHHHHHHHHHHHcCCC-cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001307 356 SVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 356 ~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1103)
.+|...+..+...+..+ .....+.+.+.+...+.+|++|+........+....+. ...-....+.....++|....+
T Consensus 294 ~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~ 371 (759)
T KOG0211|consen 294 EAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEV 371 (759)
T ss_pred HHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhh
Confidence 77888888888777655 56666777778888899999999877777666554433 2233456778888899999999
Q ss_pred HHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh
Q 001307 435 RWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~ 513 (1103)
|.++..-...++....... ..-..+.++|.+.....+ .+..||.+.+..+..+...++.+ .-...+.+.+...++
T Consensus 372 r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l~ 447 (759)
T KOG0211|consen 372 RYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNLK 447 (759)
T ss_pred hHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhcc
Confidence 9999988888887765211 022355668888888888 88899988888777776666643 234445566666777
Q ss_pred cCChhHHHHHHHHHHHHHHhhhh-hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHH
Q 001307 514 NGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1103)
Q Consensus 514 ~~~~~v~~~al~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~ 592 (1103)
+..+.||...+.-+..+-...+. ...-+-+..+|.+...- .+..+..|...++.+..++...|.+.|.+...+++
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~----~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~ 523 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA----EDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELL 523 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc----cchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH
Confidence 77888888887666444332221 23345566666666542 22257788888899988888887554444432222
Q ss_pred HHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhh
Q 001307 593 EVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETIT 672 (1103)
Q Consensus 593 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 672 (1103)
..-+ .+...+++..+...+..++..+|... +...++|.++.....+
T Consensus 524 ~~~l------~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~-------------------------- 569 (759)
T KOG0211|consen 524 RTWL------PDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQD-------------------------- 569 (759)
T ss_pred Hhhh------hhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCc--------------------------
Confidence 1110 11224688899999999999999433 3456777776664221
Q ss_pred cCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCC
Q 001307 673 LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGL 752 (1103)
Q Consensus 673 ~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~ 752 (1103)
.+..| ...+.++..++..+|..+. .+.+++.+..+..|. .++||..++..+..+...+..
T Consensus 570 ----~y~~R-------~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~------ 629 (759)
T KOG0211|consen 570 ----NYLVR-------MTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE------ 629 (759)
T ss_pred ----ccchh-------hHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch------
Confidence 12222 2334567788888876552 455666666666654 789999999999888876521
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001307 753 APGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (1103)
Q Consensus 753 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 796 (1103)
+.... .+.| +...+..+.+.+++..+..+++.+.
T Consensus 630 ------~~~~~---~v~p-ll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 630 ------SVRDE---EVLP-LLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred ------HHHHH---HHHH-HHHHhccCcccchhHHHHHHHHHHH
Confidence 11111 2222 3344556777777777766665443
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.25 E-value=6.1e-08 Score=111.34 Aligned_cols=394 Identities=18% Similarity=0.252 Sum_probs=260.2
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh-hHHHHH
Q 001307 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLH 186 (1103)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~ 186 (1103)
++..|.. .+.+.-..++.+|..+.....+...-+...+++...+.++++.+|..++..++.+.......... .-..++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 6777776 35555677888888888765554446788899999999999999999999999887654332111 225688
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001307 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~i-p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
+.+..++.++ +..|...|++++..+...-. .+..++ +..+..+...+...+..+|..+++++..++...+..
T Consensus 122 ~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~------~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRDP-DLSVAKAAIKALKKLASHPE------GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHhCCch------hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999998 99999999999999987421 122221 123566666666667889999999999999887776
Q ss_pred HHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH--HHHHHHHHhhcCCCCCcccccC
Q 001307 266 LRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN--RLFAILMSMLLDIEDDPLWHSA 342 (1103)
Q Consensus 266 ~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~w~~~ 342 (1103)
+..... .+++.++..+.+ .|.-++..+++++..+++. +. ...|+. .+++.+...+.+..+++.+
T Consensus 195 ~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~----~~----g~~yL~~~gi~~~L~~~l~~~~~dp~~--- 261 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAET----PH----GLQYLEQQGIFDKLSNLLQDSEEDPRL--- 261 (503)
T ss_pred HHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcC----hh----HHHHHHhCCHHHHHHHHHhccccCCcc---
Confidence 654332 477877776643 4566899999999999983 11 123443 3677777776654433200
Q ss_pred CCCCccccCCCchhh-HHHHHHHHHHHcCCCc---chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH--HH----
Q 001307 343 ETEDEDAGESSNYSV-GQECLDRLAIALGGNT---IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VM---- 412 (1103)
Q Consensus 343 ~~e~ed~~~~~~~~~-a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~---- 412 (1103)
...+-. ....++.++.. .+.. ..|.++..+...+.+.+...+.+|+.++|.++..... .+
T Consensus 262 ---------~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~ 331 (503)
T PF10508_consen 262 ---------SSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQ 331 (503)
T ss_pred ---------cchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 111111 22455555554 2222 3467777777888899999999999999999754332 22
Q ss_pred HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhhhh----hhHH-HHHhhccCCCCcchHHH
Q 001307 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFHP----QVLP-ALAGAMDDFQNPRVQAH 480 (1103)
Q Consensus 413 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-------~~~~~~~~----~il~-~l~~~l~~~~~~~v~~~ 480 (1103)
.+.++.++..+..........+|..++.+++.+.....+ .+...++. .-.. .+...++. |-+++|.+
T Consensus 332 ~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a 410 (503)
T PF10508_consen 332 GPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCA 410 (503)
T ss_pred chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHH
Confidence 234566777777888888889999999999999654332 11111111 1112 55666777 77999999
Q ss_pred HHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 481 a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
+...+..++..--.....--.+.+++.++.--...++..++.=+.++..++..
T Consensus 411 ~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 411 AYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999998865211000112344555555433344566666666666666644
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.19 E-value=3.9e-06 Score=95.12 Aligned_cols=283 Identities=17% Similarity=0.175 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChH
Q 001307 762 KQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAE 841 (1103)
Q Consensus 762 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~ 841 (1103)
.++...++...+..+..+...-++..++.++.. .+++....+..+.+++.+..+..+
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~---~~~~~vl~~~~p~ild~L~qlas~-------------------- 541 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCG---YCKVKVLLSLQPMILDGLLQLASK-------------------- 541 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHh---ccCceeccccchHHHHHHHHHccc--------------------
Confidence 345556666666666655554455555555432 235544455566666666655443
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhh-hccCCCCHHHHHHHHHHHHHHHhhhhhhhhhh
Q 001307 842 ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTP-MWGKDKTAEERRIAICIFDDVAEQCREAALKY 920 (1103)
Q Consensus 842 ~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 920 (1103)
.+.+++....+.|..+++..++....-=..+.|.+.. .++.+.+|.+-..+--++-+++.. -....++
T Consensus 542 ----------~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m 610 (1005)
T KOG2274|consen 542 ----------SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPM 610 (1005)
T ss_pred ----------ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcch
Confidence 1224677788888888877654322222225554443 223345666666666677666653 2233456
Q ss_pred HHhHHHHHHH---------------HHHHHHHHHHhhcCCCch-HHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHH
Q 001307 921 YETYLPFLLE---------------AAVYGLGVCAEFGGSVVK-PLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 984 (1103)
Q Consensus 921 ~~~~l~~l~~---------------~a~~~lg~l~~~~~~~~~-~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~ 984 (1103)
...++|.+++ -++--|..+.++.++.+. ..+..+++++.++.-.. ++.++.+|+-.||.
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs-----dD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS-----DDHETLQNATECLR 685 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec-----CChHHHHhHHHHHH
Confidence 6777777776 223334556667665533 34566777777776444 36788899999999
Q ss_pred HHHhhcCCCC-------CHh-hHHHHHHhcC--CCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc
Q 001307 985 KICQFHRDSI-------DAA-QVVPAWLNCL--PIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1054 (1103)
Q Consensus 985 ~l~~~~~~~~-------~~~-~~l~~~l~~l--p~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 1054 (1103)
.++.+.++.+ ... ..+-..++.| |-.+| ..+..+-+.+..++.+.+..+ ++ ++.+|+..+..-+.
T Consensus 686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sd-s~a~~VG~lV~tLit~a~~el-~~---n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSD-SAAAFVGPLVLTLITHASSEL-GP---NLDQILRAVISRLQ 760 (1005)
T ss_pred HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccch-hHHHHHhHHHHHHHHHHHHHh-ch---hHHHHHHHHHHHHH
Confidence 9988744332 011 1222233333 43344 344478888999998876655 43 78899888777664
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCC
Q 001307 1055 GKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQ 1091 (1103)
Q Consensus 1055 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 1091 (1103)
+. .+..+.+.+.-++.+|.-..+++ +-.++++||
T Consensus 761 ~a--e~lsviQsLi~VfahL~~t~~~~-~l~FL~Slp 794 (1005)
T KOG2274|consen 761 QA--ETLSVIQSLIMVFAHLVHTDLDQ-LLNFLSSLP 794 (1005)
T ss_pred Hh--hhHHHHHHHHHHHHHHhhCCHHH-HHHHHHhCC
Confidence 22 23456666666777777777777 666677755
No 47
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.16 E-value=7e-09 Score=112.19 Aligned_cols=272 Identities=17% Similarity=0.213 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHHccchHHHHHhH
Q 001307 205 ALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN--------------EATAQEALELLIELAGTEPRFLRRQL 270 (1103)
Q Consensus 205 a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~--------------~~~~~~~~~~l~~l~~~~~~~~~~~~ 270 (1103)
.++.+..+...+....-++.|.+.+...++.+...+.-++ +.++..+|+.+.-..+.+.+.|.+++
T Consensus 56 ~l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l 135 (370)
T PF08506_consen 56 MLKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFL 135 (370)
T ss_dssp HHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443332222344566666666665555443221 13445668888888888888999999
Q ss_pred HHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhcCCCC-CcccccCCCC
Q 001307 271 VDVVGSMLQIAEAES---LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIED-DPLWHSAETE 345 (1103)
Q Consensus 271 ~~l~~~l~~~~~~~~---~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~-~~~w~~~~~e 345 (1103)
+.++...++++.... ..+.+-..|+.++.++++..... ... ..+++++.++. .+++.|.-.++ .+.|..++.|
T Consensus 136 ~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~-~lf-~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E 213 (370)
T PF08506_consen 136 PTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHK-NLF-ENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE 213 (370)
T ss_dssp HHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHH-TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHH-HHh-CCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH
Confidence 999998888874322 23456677899999887632111 011 12467777665 44566664432 2345433221
Q ss_pred -----CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhcHH----
Q 001307 346 -----DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK---- 410 (1103)
Q Consensus 346 -----~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~---- 410 (1103)
-|..+..+.+.+|...+..|++..+ +.+.+.+...+...++ +.+|+.|++|+..+++++.....
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~G 292 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSG 292 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCC
Confidence 1112345677889999999998886 6777777777777665 46899999999999999865421
Q ss_pred --------HHHHhHHH-HHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHH
Q 001307 411 --------VMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1103)
Q Consensus 411 --------~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1103)
.+...+.+ ++|-+. .-.+.+|.+|..|++.+..+-..+++ +.+..++|.+++.|++ ++..|+.-|
T Consensus 293 vt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyA 366 (370)
T PF08506_consen 293 VTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYA 366 (370)
T ss_dssp -S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHH
T ss_pred cccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhh
Confidence 12233322 334444 23367899999999999998887764 5678899999999999 888888888
Q ss_pred HHHH
Q 001307 482 ASAV 485 (1103)
Q Consensus 482 ~~al 485 (1103)
+.++
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 7764
No 48
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.14 E-value=1.4e-09 Score=107.99 Aligned_cols=361 Identities=15% Similarity=0.206 Sum_probs=221.6
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhh-hhhhchhhH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~~~l~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1103)
+|.+.+.+.|.+-+....|..-+..+... ..+-+.+.+ ..++|.|...|......-.+..|..++.++.+.-......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 47777777787777777777666666543 222222222 2356778888844335567788999999988653211110
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 001307 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1103)
Q Consensus 223 ~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~ 300 (1103)
-.-..-+|.+++.| .+++.+++..++..|+.++...+ -.+.|+- ..++.++.++.....+-.+-..+...+..
T Consensus 153 Vvd~~AVPlfiqlL----~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLL----SSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHH----cCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 01124466666654 46788999999999999886432 2333322 12333333332221222333344455555
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001307 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1103)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~ 380 (1103)
+|+.+ .| .++|. .....+|
T Consensus 228 lcRGk--nP--------------------------~P~w~---------------------------------~isqalp 246 (526)
T COG5064 228 LCRGK--NP--------------------------PPDWS---------------------------------NISQALP 246 (526)
T ss_pred hhCCC--CC--------------------------CCchH---------------------------------HHHHHHH
Confidence 55421 11 11111 1122344
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001307 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1103)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (1103)
.+..++.+.+..+-.-|+++++.++.+..+-+...++ .+.+.++..|.+++..|+.-|+..+|.+.+.-....+.-.--
T Consensus 247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~ 326 (526)
T COG5064 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINC 326 (526)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheec
Confidence 5555666677777778899999999988876665555 355678888999999999999999999987543322111223
Q ss_pred hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--h
Q 001307 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--E 536 (1103)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~--~ 536 (1103)
..++.+...|.+ +...+|+.|||.++++..+-... +...+ ..+++.|+.++......+|+.|+.+++......- .
T Consensus 327 G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteq-iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 327 GALKAFRSLLSS-PKENIRKEACWTISNITAGNTEQ-IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred ccHHHHHHHhcC-hhhhhhhhhheeecccccCCHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 456667777888 77799999999999987654322 22222 2466778888888889999999999998765432 2
Q ss_pred hhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 537 HFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 537 ~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
+...|+ +.++..|...|.-..+ .+-..+++|+..+..
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dN----kiiev~LD~~eniLk 443 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDN----KIIEVALDAIENILK 443 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCc----cchhhhHHHHHHHHh
Confidence 445565 3467777777654222 234446777766643
No 49
>PRK09687 putative lyase; Provisional
Probab=99.13 E-value=1.1e-08 Score=107.16 Aligned_cols=253 Identities=19% Similarity=0.210 Sum_probs=149.0
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHH
Q 001307 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1103)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1103)
+.+...|.++ +..||..|+.+|..+-. . .++..+..+++++++.+|..+...|+.+......
T Consensus 26 ~~L~~~L~d~-d~~vR~~A~~aL~~~~~-----------~----~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 26 DELFRLLDDH-NSLKRISSIRVLQLRGG-----------Q----DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHhcCc-----------c----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 3455566776 88888888887764421 1 2333334445677888888888888887542211
Q ss_pred HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 001307 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1103)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ 346 (1103)
....++.+..++. .+.+..+|..|+..++.++.. .+
T Consensus 88 ---~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~---~~------------------------------------- 123 (280)
T PRK09687 88 ---QDNVFNILNNLAL-EDKSACVRASAINATGHRCKK---NP------------------------------------- 123 (280)
T ss_pred ---hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccc---cc-------------------------------------
Confidence 1223333333322 244567777777776655431 00
Q ss_pred ccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc
Q 001307 347 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1103)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 426 (1103)
...+.+++.+...+.+++|.+|.++..+|+.+.. +..++.++..
T Consensus 124 --------------------------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~ 167 (280)
T PRK09687 124 --------------------------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINL 167 (280)
T ss_pred --------------------------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHH
Confidence 0011223334445566778888888887765421 3466777777
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHH
Q 001307 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1103)
Q Consensus 427 l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~ 506 (1103)
+.|+++.||..|..+||.+.. ..+.+.+.|...++| +++.||..|..+|+.+ +. +..++
T Consensus 168 L~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~----~~-------~~av~ 226 (280)
T PRK09687 168 LKDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQD-KNEEIRIEAIIGLALR----KD-------KRVLS 226 (280)
T ss_pred hcCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcC-CChHHHHHHHHHHHcc----CC-------hhHHH
Confidence 788888888888888877621 123566777777777 7788888888887663 11 23455
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHH
Q 001307 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1103)
Q Consensus 507 ~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1103)
.|++.+++++ ++..++.++|.+.. +..+|.|...+.... +..++.+|++.+.
T Consensus 227 ~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~---d~~v~~~a~~a~~ 278 (280)
T PRK09687 227 VLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFD---DNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCC---ChhHHHHHHHHHh
Confidence 6666666544 55566666666654 245666666664322 3345666666553
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.12 E-value=2.8e-07 Score=105.91 Aligned_cols=426 Identities=16% Similarity=0.204 Sum_probs=251.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--hHH-HHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--DSL-TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--~~~-~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
+.+..+|+++.+. +.|-++-..++......| +.+ ...++..+.++ +.+.-..++-+|++++... -+.
T Consensus 3 ~~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-------~~~ 72 (503)
T PF10508_consen 3 EWINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-------SPD 72 (503)
T ss_pred hHHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-------CHH
Confidence 3566777777766 444444444443222122 111 23366666644 5555577888899988763 123
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC---CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 175 (1103)
.....++..+..+|.+ +++.||..++..|+.++++.-... .-+++++.+..++.+++..+...|..++..++..-.
T Consensus 73 ~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 73 SLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 3477788888999998 799999999999988876431101 236899999999999999999999999999987532
Q ss_pred hhchhh-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH-HHHHHHHHHHHhCCCHHHHHHHHH
Q 001307 176 DTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALE 253 (1103)
Q Consensus 176 ~~l~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~i-p~ll~~l~~~l~~~~~~~~~~~~~ 253 (1103)
. +... -+.+...+...+..+ +..+|..++.++..+...-+ +.+.... ..+++.+...+.++|.-++..+++
T Consensus 152 ~-~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~-----~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 152 G-LEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSP-----EAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred h-HHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCH-----HHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 1 1111 112266677777775 77899989888888876421 1121111 125556666666777778899999
Q ss_pred HHHHHHccch--HHHHHhHHHHHHHHHHhhcCCCcchHH---H-HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001307 254 LLIELAGTEP--RFLRRQLVDVVGSMLQIAEAESLEEGT---R-HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1103)
Q Consensus 254 ~l~~l~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~---r-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1103)
++.++++... .++.. ..+++.+...+.+...++.. . ...+.+.+.++.. .|... ....+.++..++
T Consensus 225 ll~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v---~~~~p~~~~~l~ 296 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEV---LELYPAFLERLF 296 (503)
T ss_pred HHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHH---HHHHHHHHHHHH
Confidence 9999998332 22221 14566666655444333311 1 1223455555542 22211 112223333333
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc--------hHHHHHHHHHhhcCCChHHHHHHHH
Q 001307 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI--------VPVASEQLPAYLAAPEWQKHHAALI 399 (1103)
Q Consensus 328 ~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~--------~~~l~~~l~~~l~~~~~~~r~aal~ 399 (1103)
.++... +.....+|.++++.++....++.+ ...++..+.....+..-..|..++.
T Consensus 297 ~~~~s~-----------------d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 297 SMLESQ-----------------DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred HHhCCC-----------------ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 322111 122445677777777654322222 2345555556666777788999999
Q ss_pred HHHHHHhhcHH----HHHHhHHHH--------HH-HHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001307 400 ALAQIAEGCAK----VMVKNLEQV--------LS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1103)
Q Consensus 400 ~l~~l~~~~~~----~~~~~l~~i--------~~-~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~ 466 (1103)
+++.+.....+ .+....... .. .+...++.|-|.+|.++...+..++.+-...-.-...+.++..++
T Consensus 360 al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~ll 439 (503)
T PF10508_consen 360 ALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLL 439 (503)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhc
Confidence 99999544332 121111111 12 677778889999999999999999875432111123556677776
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhc
Q 001307 467 GAMDDFQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1103)
..-.+ +++..+..=...+..+...
T Consensus 440 dr~~E-~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 440 DRSTE-TTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHhc
Confidence 65555 4555555445555555543
No 51
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.8e-05 Score=88.53 Aligned_cols=476 Identities=14% Similarity=0.160 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC-HhHHHHHHHHHHHhhhhhhhh
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDT 177 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~-~~~r~~al~~l~~l~~~~~~~ 177 (1103)
+..+.+...|++++.+ .+..||-.+|..++.++..+ |..--.+.+..++.+..-.+ ...=++|+.+|+.++..- =.
T Consensus 337 eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LL 413 (1133)
T ss_pred HHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Cc
Confidence 6677888999999997 79999999999999998864 31111344455555333222 344568999998887641 00
Q ss_pred chhhHHHHHHHHHHhhCCC-------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001307 178 LTPHLKHLHAVFLNCLTNS-------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1103)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~ 250 (1103)
+...+..++|++.+++.-+ ....||.+|+-.+-.+....++..-.+..+.+.+.+ +...+-+++-..|.+
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L---L~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL---LIVALFDREVNCRRA 490 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH---HHHHhcCchhhHhHH
Confidence 1125677888888877633 256899999998888888764332222122233322 333444677788999
Q ss_pred HHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh-
Q 001307 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM- 329 (1103)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 329 (1103)
|..+|.+.+...+.+ |+--+++.. . ....-..|..+..-+...+ ..++.|.+.++..++..
T Consensus 491 AsAAlqE~VGR~~n~--p~Gi~Lis~----~--dy~sV~~rsNcy~~l~~~i----------a~~~~y~~~~f~~L~t~K 552 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNF--PHGISLIST----I--DYFSVTNRSNCYLDLCVSI----------AEFSGYREPVFNHLLTKK 552 (1133)
T ss_pred HHHHHHHHhccCCCC--CCchhhhhh----c--chhhhhhhhhHHHHHhHHH----------HhhhhHHHHHHHHHHhcc
Confidence 999999888764432 111111110 0 0011122444333332222 23445667777766653
Q ss_pred hcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH
Q 001307 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA 409 (1103)
Q Consensus 330 l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 409 (1103)
+. .|.. ..+..+..+|..|+...+ +.+....++-+.....+.+...|++...+.+.+..++.
T Consensus 553 v~------HWd~-----------~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~ 614 (1133)
T KOG1943|consen 553 VC------HWDV-----------KIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR 614 (1133)
T ss_pred cc------cccH-----------HHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh
Confidence 21 2421 234467788888887665 45544444444455556788999999999998876654
Q ss_pred HHH--HH--------hHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcch
Q 001307 410 KVM--VK--------NLEQVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1103)
Q Consensus 410 ~~~--~~--------~l~~i~~~l~~~l~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1103)
..- .. -+.++++.+...--+. ...+|.+.+..+.++...-..-.+....+..-..+.+.+.+ ++ .+
T Consensus 615 ~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~i 692 (1133)
T KOG1943|consen 615 KLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-QI 692 (1133)
T ss_pred hhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-HH
Confidence 311 11 1122333333222121 24567777777776654332212112233333444555555 55 79
Q ss_pred HHHHHHHHHHHHhcCCcccccCchH-HHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 478 QAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l~~~l~-~ll~~L~~~l~~~-~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
|..|.+++..++...-.. .++.. +++...++.+.+. ...+|.....+++.+-...-. .++.+.+...+....
T Consensus 693 ~~~av~av~~l~s~y~~~--d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~-- 766 (1133)
T KOG1943|consen 693 RDAAVSAVSDLVSTYVKA--DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELL-- 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHhc--CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccC--
Confidence 999999999998764321 12222 5777777777766 566776666666665422110 022233322222221
Q ss_pred cCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcC-CCCCCC----chhhHHHHHHHHHHhHhc
Q 001307 556 ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-QMETDD----PTTSYMLQAWARLCKCLG 625 (1103)
Q Consensus 556 ~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~----~~~~~~~~~~~~l~~~~~ 625 (1103)
..+-...-|...+.++..+...++...+..-..++++.+++-+++ ..++.. -+|+.++.++..+...+.
T Consensus 767 -p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 767 -PSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 111133457777888888887777555555666666666663332 112222 278888888877665544
No 52
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=0.00011 Score=85.61 Aligned_cols=369 Identities=17% Similarity=0.196 Sum_probs=210.4
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCc---chHH-------HHHHHH
Q 001307 314 KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT---IVPV-------ASEQLP 383 (1103)
Q Consensus 314 ~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~-------l~~~l~ 383 (1103)
.+.++++.+++.+...+.....+. ..-..+.+.+..+...-|-+. ++|+ ++..+.
T Consensus 65 LLDp~L~~~v~~L~~~v~~~~~d~---------------~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~ 129 (1133)
T KOG1943|consen 65 LLDPHLESIVPNLLDIVRKFTIDL---------------GELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLE 129 (1133)
T ss_pred hccchHHHHHHHHHHHHHhccccc---------------hhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHh
Confidence 345788888888887766543221 111234444444444433222 1222 333333
Q ss_pred Hhh--cCCChHHHHHHHHHHHHHHhhcHHH--------HHH--hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 384 AYL--AAPEWQKHHAALIALAQIAEGCAKV--------MVK--NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 384 ~~l--~~~~~~~r~aal~~l~~l~~~~~~~--------~~~--~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
..- +..+|+.|+.-+++|+.+....-+. ..+ .+.+|+.....++.... ..|.+|+.+++++... +
T Consensus 130 ~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~-~~r~~aalllsk~~sR--~ 206 (1133)
T KOG1943|consen 130 RQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG-ILRRSAALLLSKLFSR--T 206 (1133)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHccc--c
Confidence 000 0346999999999999987653321 112 25566666666665444 7888999999887643 2
Q ss_pred hHHhhhhhhhHHHHHhhccCCCCcc--hHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHH
Q 001307 452 DLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTAL 527 (1103)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~--v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~--~~v~~~al~al 527 (1103)
+. .+++..++..++.+-+. ..++ .......++..+......+.+.||....+..+-.+-.+.+ .-+|+....++
T Consensus 207 D~-~~~~~~Fl~~~l~~~s~-~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~ 284 (1133)
T KOG1943|consen 207 DV-KDLLLSFLDWLLDCPST-ETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLV 284 (1133)
T ss_pred cH-HHHHHHHHHHhhcccch-hhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHH
Confidence 22 23455566665555444 3333 4456677777788777766677887777666655433322 24444444544
Q ss_pred HHHHHhh----------------------------------------hhhhHhhHhhhhHHHHHHHhhcCCcccchhhhH
Q 001307 528 ASVADSS----------------------------------------QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAK 567 (1103)
Q Consensus 528 ~~l~~~~----------------------------------------~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ 567 (1103)
..++-.. +++...+++.++..|...+. +.+..+|-.
T Consensus 285 QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~----d~dt~VrWS 360 (1133)
T KOG1943|consen 285 QRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALS----DTDTVVRWS 360 (1133)
T ss_pred HHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhcc----CCcchhhHH
Confidence 4332111 01111244445555555443 334568888
Q ss_pred HHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCC
Q 001307 568 SMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP 647 (1103)
Q Consensus 568 a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~ 647 (1103)
|.+.++.++..++.+ .+++++...+.+.+. .+++......++ +++.++.. |-....-++.++|.+++++.++.
T Consensus 361 aAKg~grvt~rlp~~----Lad~vi~svid~~~p-~e~~~aWHgacL-aLAELA~r-GlLlps~l~dVvplI~kaL~Yd~ 433 (1133)
T KOG1943|consen 361 AAKGLGRVTSRLPPE----LADQVIGSVIDLFNP-AEDDSAWHGACL-ALAELALR-GLLLPSLLEDVVPLILKALHYDV 433 (1133)
T ss_pred HHHHHHHHHccCcHH----HHHHHHHHHHHhcCc-CCchhHHHHHHH-HHHHHHhc-CCcchHHHHHHHHHHHHHhhhhh
Confidence 999999998877743 344455555544442 233333443332 44554433 33344458899999999997742
Q ss_pred CccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHh-hhhccccHHHHHHHhcccccccCC
Q 001307 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL-KEGFFPWIDQVAPTLVPLLKFYFH 726 (1103)
Q Consensus 648 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~-~~~~~p~~~~~~~~l~~~l~~~~~ 726 (1103)
..-. . ++ -...+.+||-+...+++.. +..+.||+.++...++...-+...
T Consensus 434 ~~G~-------------------~-------s~---G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 434 RRGQ-------------------H-------SV---GQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE 484 (1133)
T ss_pred hhcc-------------------c-------cc---ccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch
Confidence 1100 0 00 0112567888888998876 467899999888876554444456
Q ss_pred HHHHHHHHHhHHHHHH
Q 001307 727 EEVRKAAVSAMPELLR 742 (1103)
Q Consensus 727 ~~vr~~a~~~l~~l~~ 742 (1103)
-++|++|..++...+.
T Consensus 485 vncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVG 500 (1133)
T ss_pred hhHhHHHHHHHHHHhc
Confidence 7899999998777663
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.9e-06 Score=94.50 Aligned_cols=477 Identities=14% Similarity=0.128 Sum_probs=260.3
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHH
Q 001307 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (1103)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~ 186 (1103)
.|.+.|.+..+...+.++=.+|+.||+. ....+++|.+.....+.+.++|..-..-|-..++.-++.-. --+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LSI 110 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LSI 110 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----eeH
Confidence 3445666656666777777788888874 35788999999999998888877665545445554433210 113
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHH
Q 001307 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1103)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1103)
..|...|.|+ ++.+|..|++++.++=. ..+.|.++-.+.++..+..+-+|+.+..++.++-...+..-
T Consensus 111 ntfQk~L~Dp-N~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKDP-NQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcCC-cHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 4678899998 99999999998876532 34567888889999999999999999888888876555433
Q ss_pred HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh-----ccchhhhc---chhhHHH-HHHHHHHhhcCCCCCc
Q 001307 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-----RAPGMMRK---LPQFINR-LFAILMSMLLDIEDDP 337 (1103)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-----~~~~~~~~---~~~~~~~-l~~~l~~~l~~~~~~~ 337 (1103)
. .+.+++..++ . |.++.+.-.|+-.+..+|..+- +.-..++. ...+-+. ++..+..+-...--+
T Consensus 179 ~-qL~e~I~~LL---a--D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~- 251 (968)
T KOG1060|consen 179 D-QLEEVIKKLL---A--DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD- 251 (968)
T ss_pred H-HHHHHHHHHh---c--CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC-
Confidence 3 4445555444 2 3345555555544444443200 00000000 0011111 122222221100000
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCC---CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHH
Q 001307 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1103)
Q Consensus 338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1103)
.|.... +-+++.....-... -...-+| +.-...+++....++++.+..+-.|+..++..++-. .
T Consensus 252 P~~~~~-~~e~n~~~~~~~~~------~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~------~ 318 (968)
T KOG1060|consen 252 PTVVDS-SLEDNGRSCNLKDK------YNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK------N 318 (968)
T ss_pred cccccc-ccccCccccccccc------ccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH------H
Confidence 011000 00000000000000 0000011 112233555555566677776666666666555432 1
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH-----------------------------HhhhhhhhHHHH
Q 001307 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-----------------------------QNQFHPQVLPAL 465 (1103)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-----------------------------~~~~~~~il~~l 465 (1103)
....|+..++..|. +++.+|+..+..+..++..-+.-| .......|++.+
T Consensus 319 ~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 319 QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 34445555555443 445567777777766665332111 022345677777
Q ss_pred HhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhh
Q 001307 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1103)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i 545 (1103)
...+++ .+.++...+..+|+..+.... ..-+..+..|+.++.+.+..|...+...|..+...-+..-..++.++
T Consensus 398 q~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 398 QTYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQL 471 (968)
T ss_pred HHHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 777777 555677888888888776654 34577888999999999988888888888888876655433344444
Q ss_pred hHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc
Q 001307 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1103)
Q Consensus 546 ~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1103)
...+..+. ...-|+..++.+|..+..+. -.+++++..+.+-..+ ..+.++-.++..-.++-..-.
T Consensus 472 a~lldti~-------vp~ARA~IiWLige~~e~vp-----ri~PDVLR~laksFs~---E~~evKlQILnL~aKLyl~~~ 536 (968)
T KOG1060|consen 472 ARLLDTIL-------VPAARAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFSD---EGDEVKLQILNLSAKLYLTNI 536 (968)
T ss_pred HHHhhhhh-------hhhhhceeeeeehhhhhhcc-----hhchHHHHHHHHhhcc---ccchhhHHHHHhhhhheEech
Confidence 43332221 11235545556665554432 2344555555553332 223455455443333221112
Q ss_pred CCcccchhhhhHHHHHhcccCCCc
Q 001307 626 QDFLPYMSVVMPPLLQSAQLKPDV 649 (1103)
Q Consensus 626 ~~~~p~l~~i~~~ll~~~~~~~~~ 649 (1103)
++ ...+....++...+|+++
T Consensus 537 ~~----~kll~~Yv~~L~~yD~sY 556 (968)
T KOG1060|consen 537 DQ----TKLLVQYVFELARYDLSY 556 (968)
T ss_pred hh----HHHHHHHHHHHhccCCCc
Confidence 22 455667777777776654
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=4e-08 Score=121.61 Aligned_cols=274 Identities=17% Similarity=0.182 Sum_probs=182.6
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1103)
++.|.+.+.++++.+|..|+..|+.+.. +..++.|...|.|+ +..||..|+.+|..+......
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCc------
Confidence 4677788889999999999988886542 23456777888887 899999999998877543311
Q ss_pred HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001307 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1103)
Q Consensus 225 ~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1103)
. ..+...++++++.+|..++..|..+-...+ . .++..+ .+.+..+|..|+..+..+-.
T Consensus 686 ----~----~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~----~l~~~L--~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 686 ----A----PALRDHLGSPDPVVRAAALDVLRALRAGDA-------A----LFAAAL--GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ----h----HHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H----HHHHHh--cCCCHHHHHHHHHHHhcccC-
Confidence 0 123344556788999999888887642211 1 122333 34577889888777664311
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001307 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA 384 (1103)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 384 (1103)
+ +. +...+.+. +...+..+...|..+...- +...+.+..
T Consensus 744 ----~----------~~----l~~~l~D~-----------------~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ 782 (897)
T PRK13800 744 ----V----------ES----VAGAATDE-----------------NREVRIAVAKGLATLGAGG------APAGDAVRA 782 (897)
T ss_pred ----c----------HH----HHHHhcCC-----------------CHHHHHHHHHHHHHhcccc------chhHHHHHH
Confidence 1 11 12222111 1224445555665553211 112455667
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHH
Q 001307 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1103)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~ 464 (1103)
+++++++.+|.+|+.+|+.+... +.+.+.+...+.|+++.||.+|+.+|+.+.. +..++.
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~ 842 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPA 842 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHH
Confidence 78888999999999999877432 1233557778899999999999999987531 245588
Q ss_pred HHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001307 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1103)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~ 529 (1103)
|...|+| +++.||..|..+|..+ . --+...+.|...+++.+..||..|..+|..
T Consensus 843 L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 843 LVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8888899 8999999999999885 1 112345666778888899999999888764
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=2.2e-08 Score=123.87 Aligned_cols=273 Identities=20% Similarity=0.216 Sum_probs=186.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHH
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (1103)
..|++.|.+ +++.||+.++..++.+. -++.++.|.+.+.++++.+|..++..|..+.+..+..
T Consensus 624 ~~L~~~L~D-~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------- 686 (897)
T PRK13800 624 AELAPYLAD-PDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------- 686 (897)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch--------
Confidence 456677775 69999999998887652 2567899999999999999999999998775433221
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
+.+...|.++ ++.||.+|+.+|..+-.. . .+ .+...+.++++.+|..++..|..+-. .
T Consensus 687 -~~L~~~L~~~-d~~VR~~A~~aL~~~~~~-----~-------~~----~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 687 -PALRDHLGSP-DPVVRAAALDVLRALRAG-----D-------AA----LFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred -HHHHHHhcCC-CHHHHHHHHHHHHhhccC-----C-------HH----HHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 3555677776 999999999988875311 1 01 23345678999999999999987522 1
Q ss_pred HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC
Q 001307 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (1103)
Q Consensus 266 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e 345 (1103)
+.+...+ .|.+..+|..+...|..+... .+ ..++.+...+.+.
T Consensus 745 ---------~~l~~~l--~D~~~~VR~~aa~aL~~~~~~---~~-----------~~~~~L~~ll~D~------------ 787 (897)
T PRK13800 745 ---------ESVAGAA--TDENREVRIAVAKGLATLGAG---GA-----------PAGDAVRALTGDP------------ 787 (897)
T ss_pred ---------HHHHHHh--cCCCHHHHHHHHHHHHHhccc---cc-----------hhHHHHHHHhcCC------------
Confidence 1123333 356789999998888777541 11 1133333333221
Q ss_pred CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001307 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 425 (1103)
Q Consensus 346 ~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~ 425 (1103)
+...+..+ +..|+..-. . +.+.+.+...+.+++|.+|.+|..+|+.+.. ++.++.+..
T Consensus 788 -----d~~VR~aA---~~aLg~~g~-~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 788 -----DPLVRAAA---LAALAELGC-P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred -----CHHHHHHH---HHHHHhcCC-c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 11233334 444443322 1 1223446667888999999999999986632 245578888
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHH
Q 001307 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1103)
Q Consensus 426 ~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1103)
.++|+++.||..|.++|+.+. . -+...+.|...++| +++.||..|..+|..
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~--~--------~~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWP--G--------DPAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccC--C--------CHHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 899999999999999999861 1 12456777788888 899999999999863
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.03 E-value=2.6e-09 Score=90.25 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 001307 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1103)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1103)
.|++++.+|++++.+.+..+.++++.|++.++.++.|++++||+.||.+|.++++..++.+ -.|++++++.+.+.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 6899999999999999999999999999999999999999999999999999999998888 57999999999999999
Q ss_pred CCcchHHHHHHHHHHHH
Q 001307 473 QNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 473 ~~~~v~~~a~~al~~l~ 489 (1103)
+++.||..| ..|.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998776 4454443
No 57
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.02 E-value=1.2e-06 Score=98.88 Aligned_cols=381 Identities=15% Similarity=0.159 Sum_probs=235.0
Q ss_pred HHHHHhhcCCCH---hHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcc--
Q 001307 146 PFMFQCVSSDSV---KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-- 220 (1103)
Q Consensus 146 ~~l~~~~~s~~~---~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 220 (1103)
|.++..+.+.+. ...+..+.++..++..- .-+......++..+........+...-..++.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 556666655433 45667777777777642 112223445555555555543355667788888888877643322
Q ss_pred -hHhHHHh--hHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHccchH-HHHHhHHHHHHHHHHh-----hc-CCCcc
Q 001307 221 -DRDRFQD--LLPLMMRTLTESLNNGN---EATAQEALELLIELAGTEPR-FLRRQLVDVVGSMLQI-----AE-AESLE 287 (1103)
Q Consensus 221 -~~~~~~~--~ip~ll~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~-----~~-~~~~~ 287 (1103)
....|.+ ++|.+++.......... +.+...+...+..++...+. .-...+..++..++.. .. .....
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 3333444 78888887766554332 23333334444444433322 2222344444444300 00 00000
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHH
Q 001307 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1103)
Q Consensus 288 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~ 367 (1103)
.......+..+..+...- .+. + .+ +....++..++.+.....+ ...+..+.+++..+.+
T Consensus 161 ~~~~~~~~~l~~~il~~l--~~~-~-~~-~~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSL--RKD-V-SL-PDLEELLQSLLNLALSSED----------------EFSRLAALQLLASLVN 219 (415)
T ss_pred ccccccHHHHHHHHHHcC--Ccc-c-Cc-cCHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHc
Confidence 011112222333333210 111 0 11 1333455555554433221 1234567788888888
Q ss_pred HcCCCcchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhh
Q 001307 368 ALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1103)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (1103)
.++....+..++..+...+ .+.....|..++..+.+++.+.--.-.+...+++..++..+.| +.+...++.+++-+.
T Consensus 220 K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 220 KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILL 297 (415)
T ss_pred CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence 8755555555555555444 3455677778888888887764322224455677777777777 668888888888887
Q ss_pred hhhch------------hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc
Q 001307 447 TDLGP------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1103)
Q Consensus 447 ~~~~~------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~ 514 (1103)
...+. -+..+++..++|.+++..+. .+...+.....||..++++.+.+.+.++++.++|.+++.++.
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 66321 12246788899999999887 555588889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHH
Q 001307 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1103)
Q Consensus 515 ~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~ 551 (1103)
++..++..++.++..+....++.+.+|++.++|.|.+
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888899999999998875
No 58
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.6e-07 Score=98.52 Aligned_cols=440 Identities=14% Similarity=0.176 Sum_probs=269.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHH--HHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHH
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLA--HLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~--~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1103)
|..++.++.+.|.++++--.-+|-++.+.+|+-.+...- |---.++|+.+|-.|.-.|..+ + + + ..
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI-R---------v-p-~I 140 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI-R---------V-P-MI 140 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc-c---------h-h-hH
Confidence 566677777777777777777777777766653211111 1111367777777776555432 1 1 1 11
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhh
Q 001307 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH 181 (1103)
Q Consensus 102 ~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~ 181 (1103)
.-|.-.-++....++.+.||+.+|++|-++.+.. ..+.++++..+..++.+.++.+--.|+.++..+|..--+-+-++
T Consensus 141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn 218 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN 218 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH
Confidence 1111111222233479999999999999987743 24667999999999999998888888999998887544444445
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh-cCCc----------c-------------hHhHHHhhHHHHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSS----------A-------------DRDRFQDLLPLMMRTLT 237 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~----------~-------------~~~~~~~~ip~ll~~l~ 237 (1103)
+..++.++. |- +.==+...++.|...+.. +.++ . .+-....-+..+++.+.
T Consensus 219 yrklC~ll~----dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stk 293 (968)
T KOG1060|consen 219 YRKLCRLLP----DV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTK 293 (968)
T ss_pred HHHHHhhcc----ch-hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhcc
Confidence 555544443 32 111133455566655543 1111 0 00000122346777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001307 238 ESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1103)
Q Consensus 238 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1103)
.++.+.++.+..+++.++..++-.. .+..++..++.++.. ..+++...+..+.+++. ..|.++ .|
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~---~~~~lF---~P 358 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISI---KRPTLF---EP 358 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHh---cchhhh---hh
Confidence 8888999999999999988877532 234455555555543 35566666777777776 344332 24
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 001307 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1103)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (1103)
|+..++ ....| -......-.+.|..|+. ..-++.+++-++.++++.+...--++
T Consensus 359 ~lKsFf-------v~ssD---------------p~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 359 HLKSFF-------VRSSD---------------PTQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred hhhceE-------eecCC---------------HHHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHH
Confidence 443322 11110 00011122345555553 34567788888899998877655566
Q ss_pred HHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcch
Q 001307 398 LIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1103)
Q Consensus 398 l~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1103)
..+||..+... ...-+..+..++..+++.+..|-..+...+..+...-+. -+..++..+.+.+.....+.-
T Consensus 413 V~AiGrCA~~~----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~-----~h~~ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 413 VKAIGRCASRI----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA-----EHLEILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHHhh----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHhhhhhhhhh
Confidence 66666555432 233345666677777777888988888888888765432 244566666666654344566
Q ss_pred HHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 478 QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
|...+|.++..++..+ ...+.++..+.+.+.+....+|-+++...+.+.....+.
T Consensus 484 RA~IiWLige~~e~vp-----ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred hceeeeeehhhhhhcc-----hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh
Confidence 7777888888887643 456788888888899999999999988888776554444
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.3e-06 Score=95.86 Aligned_cols=428 Identities=15% Similarity=0.235 Sum_probs=263.1
Q ss_pred CcchhHHHHHHh----hcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 140 GWPELLPFMFQC----VSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 140 ~w~~ll~~l~~~----~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
+-.+++-.+.+. +++++.-+...|+-+++.++.. + ..+.+.|-+...++.. ++-||+-|+-|...++..
T Consensus 100 E~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---E---mardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 100 ERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---E---MARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRK 172 (866)
T ss_pred cchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---H---HhHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHc
Confidence 445555444444 4566666677888888888752 2 3455666777778886 999999999999999875
Q ss_pred cCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH---HHHHhHHHHHHHHHHhhcCC--------
Q 001307 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAEAE-------- 284 (1103)
Q Consensus 216 ~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~~~~~-------- 284 (1103)
. .+++..++......+.+.+..+...++..+.++++..+. .|+..++.++..+-++....
T Consensus 173 ~---------P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~ 243 (866)
T KOG1062|consen 173 V---------PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVH 243 (866)
T ss_pred C---------chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 4 234445666666667777888888999999999998654 44454555555444443221
Q ss_pred -CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHH
Q 001307 285 -SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1103)
Q Consensus 285 -~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~ 363 (1103)
-.++-+....+.++.-+... .+ +....+..++. +.....+.. -.....+..+|+.
T Consensus 244 gi~dPFLQi~iLrlLriLGq~---d~----daSd~M~DiLa---qvatntdss--------------kN~GnAILYE~V~ 299 (866)
T KOG1062|consen 244 GISDPFLQIRILRLLRILGQN---DA----DASDLMNDILA---QVATNTDSS--------------KNAGNAILYECVR 299 (866)
T ss_pred CCCchHHHHHHHHHHHHhcCC---Cc----cHHHHHHHHHH---HHHhccccc--------------ccchhHHHHHHHH
Confidence 02344566666666655552 11 11122222222 222221110 0112224566777
Q ss_pred HHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 001307 364 RLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIG 443 (1103)
Q Consensus 364 ~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~ 443 (1103)
.+....+...+.-.....+..++.+.+-+.|+.|+..|..+...-+.....|- ..|+.+|+|+++.+|+.|+..+-
T Consensus 300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSY 375 (866)
T ss_pred HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHH
Confidence 77766655566666778888899999999999999999988876655444444 45667899999999999999887
Q ss_pred HhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH
Q 001307 444 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA 523 (1103)
Q Consensus 444 ~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~a 523 (1103)
.+... .....++..++..|.. .++..+.....-+..+++.+.++. .-|++.+ ++.+......|+..+
T Consensus 376 ~lvn~-------~Nv~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEkfaP~k-~W~idtm----l~Vl~~aG~~V~~dv 442 (866)
T KOG1062|consen 376 ALVNE-------SNVRVMVKELLEFLES-SDEDFKADIASKIAELAEKFAPDK-RWHIDTM----LKVLKTAGDFVNDDV 442 (866)
T ss_pred HHhcc-------ccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCCcc-hhHHHHH----HHHHHhcccccchhh
Confidence 76642 4456777888888877 577888888888899999887753 3455544 344444555666777
Q ss_pred HHHHHHHHHhhhhhhHhhH-hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhh--C--h-hhhhhhHHHHHHHHHH
Q 001307 524 LTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV--G--K-DKFRDDAKQVMEVLMS 597 (1103)
Q Consensus 524 l~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~--~--~-~~~~~~~~~i~~~l~~ 597 (1103)
...+-.++.........|. ..++..+..... .+.+...+-..|.+|+|..+.-+ | . +....--.+++..+..
T Consensus 443 ~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~--~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~ 520 (866)
T KOG1062|consen 443 VNNLLRLIANAFQELHEYAVLRLYLALSEDTL--LDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEK 520 (866)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHH
Confidence 6666666554422222221 112221111100 01122334556899999888422 1 1 1122223455666555
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhHhcCC
Q 001307 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1103)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1103)
+.... .++...+.|++.++..+...++..
T Consensus 521 v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 521 VLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred HHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 44322 233457889999998888877655
No 60
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=0.00063 Score=82.22 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=89.8
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
...++.++..++..+.. +.+.+|..|..||..+++.=+ .. --.+.+-..+..-+.+....||+.|+..+|..+-+.
T Consensus 811 ~~sfD~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp-~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSVLGE-NAIALRTKALKCLSMIVEADP-SV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI 886 (1692)
T ss_pred HHhhHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcCh-Hh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc
Confidence 45677888888888887 889999999999999987643 32 234566677777788889999999999999999888
Q ss_pred hhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhC
Q 001307 535 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1103)
++....||+.+...+.. ....+|.+++..+..+....+
T Consensus 887 ~e~~~qyY~~i~erIlD--------tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 887 PELIFQYYDQIIERILD--------TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhCC
Confidence 88888888887765532 235689999999988876543
No 61
>PRK09687 putative lyase; Provisional
Probab=98.90 E-value=6.2e-07 Score=93.98 Aligned_cols=230 Identities=15% Similarity=0.102 Sum_probs=163.0
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
.+--....++..+.++|..+|..|-..|..+.. +.. ...+..+ .++.++.+|..|+..|..+-.. .
T Consensus 20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~~-~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~----------~ 85 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG--QDV-FRLAIEL-CSSKNPIERDIGADILSQLGMA----------K 85 (280)
T ss_pred HhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--chH-HHHHHHH-HhCCCHHHHHHHHHHHHhcCCC----------c
Confidence 455577888888899999999999999988765 443 3556664 4578999999999999884321 1
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
..+...-..|...+..++++.||..++.++|.+..... ...+.+++.+...+.++++.+|..+...|+.+..
T Consensus 86 ~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 86 RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 11233334555555566899999999999998754221 1347788888888899999999999999975532
Q ss_pred hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001307 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1103)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1103)
+..++.+...+.|+ ++.||..|+.+|+.+ . .. . |...+.|...+.+.++.+|..+...|..+
T Consensus 158 ----~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~-~-~~---~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ----EAAIPLLINLLKDP-NGDVRNWAAFALNSN-K-YD---N--------PDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ----HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC-C-CC---C--------HHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 24567888889997 899999999999987 1 11 1 13344455566788999999999999875
Q ss_pred HccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001307 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1103)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 302 (1103)
-. ...++.++..+.+ ..+|..+++.++.+.
T Consensus 220 ~~----------~~av~~Li~~L~~----~~~~~~a~~ALg~ig 249 (280)
T PRK09687 220 KD----------KRVLSVLIKELKK----GTVGDLIIEAAGELG 249 (280)
T ss_pred CC----------hhHHHHHHHHHcC----CchHHHHHHHHHhcC
Confidence 43 2344555555543 236766666666554
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.88 E-value=1.2e-07 Score=98.22 Aligned_cols=188 Identities=21% Similarity=0.329 Sum_probs=136.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001307 381 QLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1103)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (1103)
.+.....+.+|..|..|+.-+..+..+. .+.+...+..++..+...+.|....|...|+.+++.++..++..+ .
T Consensus 11 ~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~-~ 89 (228)
T PF12348_consen 11 ALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF-E 89 (228)
T ss_dssp THHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-H
T ss_pred HHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-H
Confidence 3333446789999999999999998876 234455666777899999999999999999999999999999998 7
Q ss_pred hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHH-HHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~l-l~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
++.+.++|.|++.+.+ ++..++..|..+|..+++.++ +.+.+ ...+.....+.++.+|..++..+..+....
T Consensus 90 ~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 90 PYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999 888999999999999998776 22333 566777788899999999999999999888
Q ss_pred h---hhhHh--hHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhC
Q 001307 535 Q---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 535 ~---~~~~~--~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1103)
+ ..+.. +++.+.+.+...+.. ....+|..|-.++..+...+|
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 7 33433 457788888777643 456789999999999988777
No 63
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-07 Score=109.56 Aligned_cols=304 Identities=17% Similarity=0.222 Sum_probs=199.2
Q ss_pred hhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc--
Q 001307 143 ELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS-- 219 (1103)
Q Consensus 143 ~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-- 219 (1103)
-+++.+..++.+- ....|..|+.++..+..++.++. .++.++|.+...+.|+ ...||..|+.++..++....+.
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCc
Confidence 3567777777653 34677889999999998876653 5889999999999998 9999999999999998765421
Q ss_pred chHhHHHhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Q 001307 220 ADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1103)
Q Consensus 220 ~~~~~~~~~ip~ll~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l 298 (1103)
.+...|.+ +++..|...+.+ ....+|.....+|..++.....++.-....=...+ .. +.+.+
T Consensus 499 ~daniF~e---YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~---~n--~~nse--------- 561 (1431)
T KOG1240|consen 499 SDANIFPE---YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM---LN--DPNSE--------- 561 (1431)
T ss_pred ccchhhHh---hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc---cc--Ccccc---------
Confidence 23333444 677777777776 45567888888999988876655432111000001 11 11111
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHH
Q 001307 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1103)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (1103)
+..+. ..-.-...+...+++.+..+ +.+. ..-...+..+.+..|+..+|...--..+
T Consensus 562 -t~~~~--~~~~~~~~L~~~V~~~v~sL---lsd~-----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~i 618 (1431)
T KOG1240|consen 562 -TAPEQ--NYNTELQALHHTVEQMVSSL---LSDS-----------------PPIVKRALLESIIPLCVFFGKEKSNDVI 618 (1431)
T ss_pred -ccccc--ccchHHHHHHHHHHHHHHHH---HcCC-----------------chHHHHHHHHHHHHHHHHhhhcccccch
Confidence 00000 00000000111222222222 2111 1123445566688888889877777778
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001307 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1103)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (1103)
++++..++++.+|..|-|-+..|.-++-..+.. ..-+-++|.+.++|.|+.+.|-..|+.++..+++. ..+.+.+.
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v 694 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAV 694 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHH
Confidence 889999999999999987666655443332210 01234789999999999999999999999998874 22335566
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
-+++..+...|-. |+.-+|..++..|....+.++.
T Consensus 695 ~~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 695 KDILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhhh
Confidence 6777777777777 8899999999999999887754
No 64
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=0.00025 Score=79.14 Aligned_cols=509 Identities=11% Similarity=0.072 Sum_probs=250.2
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhc-CCcccccCchHHHHHH-
Q 001307 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN-CTPEILTPYLDGIVSK- 507 (1103)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~-~~~~~l~~~l~~ll~~- 507 (1103)
.+|.+-..++.|+|++..|+.-.. -.-+..++.+.+.++- ..+|.+||.++-.++.. +.|..-.+.+..+-..
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInL--IaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l 279 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINL--IANDYFLNLLYKFLNI---EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTL 279 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhh--hhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 388999999999999999875433 1234567777777765 68999999999887754 3332212333333111
Q ss_pred -HHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhh
Q 001307 508 -LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD 586 (1103)
Q Consensus 508 -L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~ 586 (1103)
+.... +.+...-..-.+-++.++...|..+. -...+.. . ..+..+ +.+|+.
T Consensus 280 ~lfg~~-s~dq~~d~df~e~vskLitg~gvel~-------~i~s~ln-s---eld~~~---kqn~l~------------- 331 (980)
T KOG2021|consen 280 ELFGYH-SADQMDDLDFWESVSKLITGFGVELT-------IIISQLN-S---ELDTLY---KQNVLS------------- 331 (980)
T ss_pred HHHhhh-ccccccCchHHHHHHHHHhhcceeee-------hhHhhhh-h---ccCHHH---HHHHHH-------------
Confidence 11111 11111111122222333333332211 1111110 0 001111 112222
Q ss_pred hHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc------CCcccchhhhhHHHHHhcccCCCccccCCCCCccc
Q 001307 587 DAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG------QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 660 (1103)
Q Consensus 587 ~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~ 660 (1103)
.+.++++++++..+++ ++.....++.++......++ +.-..++..++..+.+.+.+|+.....++ ..+
T Consensus 332 ~ll~~vpyllq~l~~e---~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn---~tg 405 (980)
T KOG2021|consen 332 ILLEIVPYLLQFLNNE---FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDN---VTG 405 (980)
T ss_pred HHHHHHHHHHHHhccc---chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccC---CCC
Confidence 2233455555544433 23344455555554443332 23345677888888899888875543221 111
Q ss_pred cCCCCcccchhhcCCceeeeechhHHHHHHHHHH-HHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHH
Q 001307 661 EDSDDDSMETITLGDKRIGIKTSVLEEKATACNM-LCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPE 739 (1103)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~-l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~ 739 (1103)
+| +++..+ |-.--++. +-.++..-|+-+...+.+.+......... .++..-..|...+..
T Consensus 406 ~E-eEa~f~-----------------e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e-~swqevE~Aiylly~ 466 (980)
T KOG2021|consen 406 DE-EEAFFE-----------------EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKE-ESWQEVELAIYLLYN 466 (980)
T ss_pred ch-HHHHHH-----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHH
Confidence 11 111111 10011112 22222223444545556655554444332 255666677777766
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 001307 740 LLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEAL-HKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQV 818 (1103)
Q Consensus 740 l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~ 818 (1103)
+..+++... .|-..+..+ ..+....+++.+.... ..-+.+.+....++.+....+-+.. ...+++.++..+.
T Consensus 467 lgE~l~~~~-~~~nsgd~s--~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~--esq~ip~vL~aFl-- 539 (980)
T KOG2021|consen 467 LGECLKNNY-FGLNSGDIS--TSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST--ESQKIPLVLNAFL-- 539 (980)
T ss_pred Hhhcccccc-ccccCcccc--HHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--chhhhHHHHHHHc--
Confidence 666653211 111111111 1123344444444332 2223344444445544443222221 2233333333222
Q ss_pred HHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhcc-CCCC--
Q 001307 819 ITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-KDKT-- 895 (1103)
Q Consensus 819 l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-~~~~-- 895 (1103)
+ .+..+. ..+.||..+.-++..++|..+....|++++++..+.++|. +..+
T Consensus 540 --d---~rglhn---------------------~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N 593 (980)
T KOG2021|consen 540 --D---SRGLHN---------------------KNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTIN 593 (980)
T ss_pred --c---chhccc---------------------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcC
Confidence 1 111110 1235788899999999999999999999999888888772 1110
Q ss_pred --------HHHHHHHHHHHHHHHhhh---hhhhhhhHHhHHHHHHH-------------------------HHHHHHHHH
Q 001307 896 --------AEERRIAICIFDDVAEQC---REAALKYYETYLPFLLE-------------------------AAVYGLGVC 939 (1103)
Q Consensus 896 --------~~~r~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~-------------------------~a~~~lg~l 939 (1103)
.+.....+.++|-++... .+.-..|.+.++..++. +++-|+|.+
T Consensus 594 ~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~l 673 (980)
T KOG2021|consen 594 AQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTL 673 (980)
T ss_pred ccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 011112233333333221 11112244333332221 667788888
Q ss_pred HhhcCCC--------chHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhcCCCC
Q 001307 940 AEFGGSV--------VKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLNCLPIK 1010 (1103)
Q Consensus 940 ~~~~~~~--------~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~~~~~l~~~l~~lp~~ 1010 (1103)
++.-... ....+.++++.+...+...+. .+..|+.+-..++||+..-+..+ | ++|..++.|-..
T Consensus 674 akgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k----~E~iRsavrft~hRmI~~lg~~vlP---fipklie~lL~s 746 (980)
T KOG2021|consen 674 AKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNK----FENIRSAVRFTFHRMIPILGNKVLP---FIPKLIELLLSS 746 (980)
T ss_pred hhcccccCcchhcccHHHHHHHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHHhcchhhhc---chHHHHHHHHhc
Confidence 8754321 223356777777777776542 56789999999999998876655 4 455556555333
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcccC
Q 001307 1011 GDLIEAKIVHEQLCSMVERSDSDLLG 1036 (1103)
Q Consensus 1011 ~D~~e~~~~~~~l~~l~~~~~~~~~~ 1036 (1103)
.|.-|-......|..++-..+..+.+
T Consensus 747 ~d~kEmvdfl~flsQLihkfk~~~~~ 772 (980)
T KOG2021|consen 747 TDLKEMVDFLGFLSQLIHKFKTDCYQ 772 (980)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556777777777766655443
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.5e-05 Score=85.36 Aligned_cols=209 Identities=14% Similarity=0.226 Sum_probs=138.0
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHH
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~ 147 (1103)
+.-|.+|.-|..+|.+.+-+ .++..+.-+ ..|.+.|.+ +++.|..++..+|..+|+. .| ..+-.|-|.
T Consensus 155 sskpYvRKkAIl~lykvFLk--------YPeAlr~~F-prL~EkLeD-pDp~V~SAAV~VICELArK-nP-knyL~LAP~ 222 (877)
T KOG1059|consen 155 SSKPYVRKKAILLLYKVFLK--------YPEALRPCF-PRLVEKLED-PDPSVVSAAVSVICELARK-NP-QNYLQLAPL 222 (877)
T ss_pred cCchHHHHHHHHHHHHHHHh--------hhHhHhhhH-HHHHHhccC-CCchHHHHHHHHHHHHHhh-CC-cccccccHH
Confidence 56688888888888776544 334444444 456677776 7999999999999999986 34 566777888
Q ss_pred HHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh-cCCcchHhHH
Q 001307 148 MFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSSADRDRF 225 (1103)
Q Consensus 148 l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~ 225 (1103)
++.++..+ +...-..-+.+|+.+...-|. .-..+++.+.+.+.+..-..+-. .|+..++.. +..+. ..-
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlY---ECvNTVVa~s~s~g~--~d~ 293 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLY---ECVNTVVAVSMSSGM--SDH 293 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHH---HHHHHheeehhccCC--CCc
Confidence 88877543 333334455556655543221 23456666776666641112222 222222221 11110 001
Q ss_pred HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001307 226 QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 226 ~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
...+...++-|...+.+.|+..+.-++-++..++..+|+.+..|-+-++.++ .|.|+.+|..|++++..++.
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL------~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL------DDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh------ccCCchhHHHHHHHHHHHhh
Confidence 2345678888888888999999999999999999999999888876666544 35678999999999998887
No 66
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.0014 Score=79.28 Aligned_cols=133 Identities=27% Similarity=0.422 Sum_probs=111.6
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHh
Q 001307 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ 113 (1103)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~ 113 (1103)
++++.|.+|.+.+.+++. .|+.+ .....++..+.++.+|.+|..+|-+.++.+ |..+|.+.+..+|..++....
T Consensus 24 ~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~r~glk~~v~~~~~ 97 (1041)
T KOG2020|consen 24 GSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEERVGLKNYVLTLII 97 (1041)
T ss_pred cchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCccccHHHHHHHHHHHh
Confidence 578899999999999999 78876 446667777889999999999999999998 999999999999999888765
Q ss_pred hc--------chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q 001307 114 LE--------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1103)
Q Consensus 114 ~e--------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~ 174 (1103)
.- +...++++++..+-.+++.++| ..||+++|.+.+.... +...++.++.++..+.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEdv 164 (1041)
T KOG2020|consen 98 EASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSMIILLLLSEEV 164 (1041)
T ss_pred hcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHHHHHHHHHHHH
Confidence 31 2456788999999999999999 8999999999998774 3456777888888777753
No 67
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.2e-06 Score=85.75 Aligned_cols=397 Identities=14% Similarity=0.175 Sum_probs=229.1
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC
Q 001307 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1103)
Q Consensus 59 ~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1103)
+.|.+-+- +.+-+....|..-+|+.+++. .-..+.+-....+...+++.+..-...-.+--++=++..+++.....
T Consensus 74 p~lt~~l~-SdDie~q~qav~kFR~~LS~E---~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLF-SDDIEQQLQAVYKFRKLLSKE---TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHhccc---cCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 44444332 456667777888899998875 23445555666777788888854334445566777888887743221
Q ss_pred CC---cchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHH--HHHHHHHHhhCCC-CChHHHHHHHHHHHHH
Q 001307 139 NG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK--HLHAVFLNCLTNS-NNPDVKIAALNAVINF 212 (1103)
Q Consensus 139 ~~---w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~--~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l 212 (1103)
.. -..-+|.+++++.+++..+|+-+.-+|+.++...+. .+.|+- ..+..++..+.+. .+..+-..+...|+++
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 11 135689999999999999999999999999875432 222211 1222333333333 1234455677888888
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHH
Q 001307 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTR 291 (1103)
Q Consensus 213 ~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r 291 (1103)
...-..+.++.... ..+.+|..++.+.++++...++..+.-+....-+.+...++ .+...++.++.++ +..+.
T Consensus 229 cRGknP~P~w~~is----qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iq 302 (526)
T COG5064 229 CRGKNPPPDWSNIS----QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQ 302 (526)
T ss_pred hCCCCCCCchHHHH----HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--ccccc
Confidence 76543333444444 44555666666789999999999888777654333332221 0111111121111 11111
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001307 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1103)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1103)
.-|+..++.++ ...|+ .+. .+ -..|
T Consensus 303 tPalR~vGNIV-----------------------------TG~D~--------------QTq-------vi----I~~G- 327 (526)
T COG5064 303 TPALRSVGNIV-----------------------------TGSDD--------------QTQ-------VI----INCG- 327 (526)
T ss_pred CHHHHhhcCee-----------------------------ecCcc--------------cee-------hh----eecc-
Confidence 11111111000 00000 000 00 0011
Q ss_pred CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhc
Q 001307 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
.++.+..++.++.-+.|.-|++.++.+..|..+.+...++ .++|.++..+..-+-.+|..|||+++....+.-
T Consensus 328 ------~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 328 ------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred ------cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3445555677777799999999999999998887776665 588999999999999999999999998776542
Q ss_pred --hhHHhhh--hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc------c---cCchH--HHHHHHHHHhhcC
Q 001307 451 --PDLQNQF--HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI------L---TPYLD--GIVSKLLVLLQNG 515 (1103)
Q Consensus 451 --~~~~~~~--~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~------l---~~~l~--~ll~~L~~~l~~~ 515 (1103)
|++ -.| ...++..|+..|.- .+.++-.-+..++.+++..-..+. + ..|.+ ..|+.+..+-++.
T Consensus 402 ~~PD~-iryLv~qG~IkpLc~~L~~-~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~ 479 (526)
T COG5064 402 NRPDI-IRYLVSQGFIKPLCDLLDV-VDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSV 479 (526)
T ss_pred CCchH-HHHHHHccchhHHHHHHhc-cCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcc
Confidence 232 223 34566667777665 344555667788877765432110 1 11221 2344555555555
Q ss_pred ChhHHHHHHHHHHH
Q 001307 516 KQMVQEGALTALAS 529 (1103)
Q Consensus 516 ~~~v~~~al~al~~ 529 (1103)
+..+-..|++.|..
T Consensus 480 n~~iy~KAYsIIe~ 493 (526)
T COG5064 480 NRTIYDKAYSIIEK 493 (526)
T ss_pred ccHHHHHHHHHHHH
Confidence 55555555554443
No 68
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=0.00081 Score=75.82 Aligned_cols=506 Identities=16% Similarity=0.201 Sum_probs=277.9
Q ss_pred chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh-----cCC-hhHHHHHHHHHHHHHHhhhh--hhHhhH-hhhh
Q 001307 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-----NGK-QMVQEGALTALASVADSSQE--HFQKYY-DAVM 546 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~-----~~~-~~v~~~al~al~~l~~~~~~--~~~~~~-~~i~ 546 (1103)
.+|-.|-..+..+.+..+ +.+.|++-.++..-.+... +-+ --.+.+++.++|..+....+ +|..++ +.++
T Consensus 412 ~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ll 490 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALL 490 (978)
T ss_pred ccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhC
Confidence 456666666666666655 3455555555544444331 111 23466677888887776654 466655 3455
Q ss_pred HHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHh--
Q 001307 547 PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL-- 624 (1103)
Q Consensus 547 ~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-- 624 (1103)
|-+. + ...+.+.+|.+....+|.....--++...|- +...++++...+ .|-.++-.+.+++..+..-.
T Consensus 491 pEl~----~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l---~Y~a~lnLL~d~--~D~vV~Ltt~~tlkl~vDD~nF 560 (978)
T KOG1993|consen 491 PELA----N-DHGNSRIIRRRVAWILGQWVSVQQKLELKPL---LYCAFLNLLQDQ--NDLVVRLTTARTLKLVVDDWNF 560 (978)
T ss_pred HHhh----h-cccchhHHHHHHHHHHhhhhheechHhHHHH---HHHHHHHhcCcc--ccceeehHHHHHHHHhhhhccC
Confidence 5554 2 3445678899988888887653222333332 445555554422 23346666666666555442
Q ss_pred -cCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhh
Q 001307 625 -GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1103)
Q Consensus 625 -~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~ 703 (1103)
.+.|.||+|.+...+++.+..-. ..+.|..-+.+++.+....+
T Consensus 561 ~~dsFlp~lenlf~~lfkll~~~~------------------------------------e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 561 SEDSFLPYLENLFVLLFKLLKAVE------------------------------------ECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHh------------------------------------hhhhHHHHHHHHHHHHHHHH
Confidence 46699999999999888874310 12346667889999999999
Q ss_pred hhccccHHHHHHHhccccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHc-cCCc
Q 001307 704 EGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALH-KEPD 781 (1103)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~ 781 (1103)
+.+.||...++..+-.+-+.. .++-.|.+...++-+++.+++. .+. ..+..++|.+-.... +.++
T Consensus 605 e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~----------qS~---~~~~fL~pVIel~~D~~sP~ 671 (978)
T KOG1993|consen 605 EHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA----------QSF---EFYPFLYPVIELSTDPSSPE 671 (978)
T ss_pred HhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc----------CCc---cchHHHHHHHHHhcCCCCCc
Confidence 999999988887765554432 2445788888888888887631 222 233344454322221 1111
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHH
Q 001307 782 -TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQV 860 (1103)
Q Consensus 782 -~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~ 860 (1103)
.-...+.++-....+... +.+++ .+-.+++.+...+..+. +.+..+
T Consensus 672 hv~L~EDgmeLW~~~L~n~-~~l~p-~ll~L~p~l~~~iE~st-------------------------------e~L~t~ 718 (978)
T KOG1993|consen 672 HVYLLEDGMELWLTTLMNS-QKLTP-ELLLLFPHLLYIIEQST-------------------------------ENLPTV 718 (978)
T ss_pred eeehhhhHHHHHHHHHhcc-cccCH-HHHHHHHHHHHHHHhhh-------------------------------hhHHHH
Confidence 222334444444444433 22333 34455666555554422 124456
Q ss_pred HHHHHHHHHHhhhchh-hhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001307 861 GEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVC 939 (1103)
Q Consensus 861 ~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~a~~~lg~l 939 (1103)
..++...+-..++.|. .|...++..+.+++.+ -..+.-...+.++.-+++..+--...+.+.++|.+.. .+
T Consensus 719 l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d-vr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~-------~I 790 (978)
T KOG1993|consen 719 LMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD-VRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFL-------SI 790 (978)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHH-------HH
Confidence 6666665555555544 4555566666666532 2223333444555555554321111244555554433 11
Q ss_pred HhhcCCCchHH-HHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCC-CCCHhhHHHHHHhcCCCCCcHHHHH
Q 001307 940 AEFGGSVVKPL-VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRD-SIDAAQVVPAWLNCLPIKGDLIEAK 1017 (1103)
Q Consensus 940 ~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~-~~~~~~~l~~~l~~lp~~~D~~e~~ 1017 (1103)
+++.+ .|| ....+....++.-.. ..+. .+++...++ ..-+..++..|+...|...+.+..+
T Consensus 791 ~~~~~---yP~~~~~yl~vvaRi~l~n-------~~~~-------msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rK 853 (978)
T KOG1993|consen 791 AENDK---YPYVMGEYLLVVARISLRN-------PSLF-------MSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRK 853 (978)
T ss_pred HhCCC---CchhHHHHHHHHHHHHhcC-------hHHH-------HHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhh
Confidence 33322 122 122233333332211 1111 111111110 0013456777887777666554444
Q ss_pred HHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc-------C----------------------------------C
Q 001307 1018 IVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC-------G----------------------------------K 1056 (1103)
Q Consensus 1018 ~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~-------~----------------------------------~ 1056 (1103)
--.-+|..++..+++.++. .++.|+++-.+.|. + .
T Consensus 854 l~~LalsSll~t~~~~ila----~~~~I~nl~~e~L~eV~ed~~g~~~~~~~~d~~~e~~~~~d~tteq~~r~k~l~lkD 929 (978)
T KOG1993|consen 854 LNTLALSSLLRTNNPDILA----VLDSIMNLWFEVLSEVMEDANGDATDYHLNDDLSEQGVYEDETTEQDTRHKQLLLKD 929 (978)
T ss_pred HHHHHHHHHhccCCcHHHH----HHhHHHHHHHHHHHHHhhhccCchHHHHhhhhhhccccCCchhhHHHHHHHHHhccC
Confidence 4456778888887887776 36666554443331 0 0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307 1057 DLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
+.-+...+.-+...+..++...+.+-+++.+++..|+.+..+|.+++
T Consensus 930 PVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 930 PVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred CcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 01122355666777788888888777999999999999999998764
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00095 Score=75.62 Aligned_cols=419 Identities=17% Similarity=0.195 Sum_probs=238.3
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHH
Q 001307 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1103)
Q Consensus 104 ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~ 183 (1103)
+-+.+-+-|.+ ++.-+.-.+--+++.++.. .--+++.|.+.+++++.++.+|..|..+...+....++. +.
T Consensus 108 ltNslknDL~s-~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e 178 (866)
T KOG1062|consen 108 LTNSLKNDLNS-SNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VE 178 (866)
T ss_pred HHHHHHhhccC-CCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HH
Confidence 33333334443 3443333333344444332 355899999999999999999999999988888877764 55
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-----------CHHHHHHHH
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-----------NEATAQEAL 252 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~-----------~~~~~~~~~ 252 (1103)
.+++.+.+.|.+. +..|-.+++..+..++..- ......|.+++|.++..|.+...++ +|-.....+
T Consensus 179 ~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~--~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 179 HFVIAFRKLLCEK-HHGVLIAGLHLITELCKIS--PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 6777888888887 8899999998888888752 2345678899999999999877643 344455555
Q ss_pred HHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHH-HHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001307 253 ELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL-AIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1103)
Q Consensus 253 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1103)
+.|.-+....+. ....+.+++. +++.+.+.+.++-.. -.++..++...+ + .......-+..+-+.+.
T Consensus 256 rlLriLGq~d~d-aSd~M~DiLa---qvatntdsskN~GnAILYE~V~TI~~I~---~-----~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 256 RLLRILGQNDAD-ASDLMNDILA---QVATNTDSSKNAGNAILYECVRTIMDIR---S-----NSGLRVLAINILGKFLL 323 (866)
T ss_pred HHHHHhcCCCcc-HHHHHHHHHH---HHHhcccccccchhHHHHHHHHHHHhcc---C-----CchHHHHHHHHHHHHhc
Confidence 555544443321 1111222221 222222222221111 112222222210 0 00111112222222222
Q ss_pred CCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHH
Q 001307 332 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV 411 (1103)
Q Consensus 332 ~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 411 (1103)
.. +...+.+|...|.+....-+ ..+..--..+.+.++++|...|.-|+.....+...
T Consensus 324 n~-----------------d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~---- 380 (866)
T KOG1062|consen 324 NR-----------------DNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNE---- 380 (866)
T ss_pred CC-----------------ccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc----
Confidence 11 12234455555555443321 22333334566788899998888888888777765
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhc
Q 001307 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1103)
..+..++..++..|...++..|.....-+..+++.+.|+ ..|+=+.+-.++..-.+ -|+..+...+..++..
T Consensus 381 --~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~--k~W~idtml~Vl~~aG~----~V~~dv~~nll~LIa~ 452 (866)
T KOG1062|consen 381 --SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD--KRWHIDTMLKVLKTAGD----FVNDDVVNNLLRLIAN 452 (866)
T ss_pred --ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhccc----ccchhhHHHHHHHHhc
Confidence 466677777777887778889998888888899888875 35555555555554444 4555566666666655
Q ss_pred CCcccccCc-hHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHhhh-----hhhHh-hHhhhhHHHHHHHhhcCCcccc
Q 001307 492 CTPEILTPY-LDGIVSKLLV--LLQNGKQMVQEGALTALASVADSSQ-----EHFQK-YYDAVMPFLKAILVNATDKSNR 562 (1103)
Q Consensus 492 ~~~~~l~~~-l~~ll~~L~~--~l~~~~~~v~~~al~al~~l~~~~~-----~~~~~-~~~~i~~~l~~~l~~~~~~~~~ 562 (1103)
...+ ...| ...+...+.. .+.-+.+.+...+.+|||.-++..- +.... --..++..+.+.+..... ..
T Consensus 453 ~~~e-~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s--~~ 529 (866)
T KOG1062|consen 453 AFQE-LHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS--DS 529 (866)
T ss_pred CCcc-hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc--hH
Confidence 4222 2222 1122222211 1122344556678888887663221 11111 224577777777765433 25
Q ss_pred hhhhHHHHHHHHHHHhhC
Q 001307 563 MLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 563 ~lr~~a~~~l~~i~~~~~ 580 (1103)
..|+.|+.++..+...++
T Consensus 530 ~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 530 TTKGYALTALLKLSSRFH 547 (866)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 678888888887765554
No 70
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.6e-05 Score=87.98 Aligned_cols=474 Identities=16% Similarity=0.162 Sum_probs=281.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCccccCCHHHH
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1103)
+..++.++...|-+..+--..++....+.+|+..+.+.--++.+ ++++.+|.+|...+... +. ....
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--------~v---~~i~ 119 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--------RV---DKIT 119 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--------ee---hHHH
Confidence 55667777777888888888888888887887754544455544 77899999997666432 11 3455
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh-hchh
Q 001307 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLTP 180 (1103)
Q Consensus 102 ~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~-~l~~ 180 (1103)
+.+-..+.+.+.+ .++.+|+.++.+++.+.........-..+++.|..++.++++.+...|+..+..+.+..++ ....
T Consensus 120 ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 120 EYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 6677788888997 6999999999999888664333234467888999999999999999999999999987664 2222
Q ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001307 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1103)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1103)
...+++..++..++.- ..=-+...+++ +..+.++.. .+. . .+++.+...++..++.+...+...+..+..
T Consensus 199 l~~~~~~~lL~al~ec-~EW~qi~IL~~---l~~y~p~d~-~ea-~----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 199 LNPQLINKLLEALNEC-TEWGQIFILDC---LAEYVPKDS-REA-E----DICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccHHHHHHHHHHHHHh-hhhhHHHHHHH---HHhcCCCCc-hhH-H----HHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 3445555666666654 32233344444 444443321 221 1 455666666667777777778888877776
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001307 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1103)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~ 340 (1103)
.....-...+..+-+.+..++.. .+++...++.-+.-+.. +.|...+ .-+...+ ..+ .|+
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~---~~p~~~~-------~~~~~Ff--~ky--nDP--- 328 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQ---KRPEILK-------VEIKVFF--CKY--NDP--- 328 (734)
T ss_pred HHHHHHHHHHHHhcccceeeecc---cchhhHHHHhhHHHHHH---hChHHHH-------hHhHeee--eec--CCc---
Confidence 55553333444444444444432 23555555555554444 2332211 1011000 000 000
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001307 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1103)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1103)
......-.+++..++. +..++.++.-+.++...-+...-..++.++|.++-...+. ...+
T Consensus 329 -----------iYvK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv 388 (734)
T KOG1061|consen 329 -----------IYVKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCV 388 (734)
T ss_pred -----------hhhHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhH
Confidence 0011123445555553 3445556666666666666666667888999887654432 4566
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCc
Q 001307 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1103)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1103)
+.++..++-....|...+...+..+....+. ..+.+++.+...+..-.+|+.|.+-.|.++.+.+.++.
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------ 457 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRKYPN-----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ 457 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhcCCC-----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------
Confidence 6666666655444555555555555544432 23667777777776656788888889999988877652
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
...+++.+++.+.+....|+...+.+.-.+.-..+..- +..+..+...... +.+...+|.+++.-...+.
T Consensus 458 a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t----q~~l~~vL~~~~~--d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 458 ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTET----QELLQGVLPLATA--DTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHhhhhc--cccChhhhhhHHHHHHHhh
Confidence 34555666666666667776666655554433333221 2222222222111 2233457877776655554
No 71
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.73 E-value=0.00046 Score=89.93 Aligned_cols=549 Identities=17% Similarity=0.244 Sum_probs=295.1
Q ss_pred hHHHHHHHHHHHcCC--CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001307 357 VGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 357 ~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1103)
.+..+++.++...+. ...+..-...+.+++.+..-..|.+|...+..++...+..+.+++..++..++....|+++.+
T Consensus 112 ~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i 191 (2341)
T KOG0891|consen 112 LAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAI 191 (2341)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhh
Confidence 455555555533321 122333333444444444455778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhchhHH---hhhhhhhHHHHHhhccCCCCcc------------------------hHHHHHHHH--
Q 001307 435 RWAAINAIGQLSTDLGPDLQ---NQFHPQVLPALAGAMDDFQNPR------------------------VQAHAASAV-- 485 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~---~~~~~~il~~l~~~l~~~~~~~------------------------v~~~a~~al-- 485 (1103)
|..|+.++.......+.... ..++...+...-..+.+ +... .+...+...
T Consensus 192 ~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l 270 (2341)
T KOG0891|consen 192 RLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSS-DGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLL 270 (2341)
T ss_pred hHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccc-hHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999877665543220 11122222222222221 1100 111111000
Q ss_pred -------------HHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHH
Q 001307 486 -------------LNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1103)
Q Consensus 486 -------------~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1103)
..+....+...-..|+...+..++..+. .++..++..|+.++-+.+..+.+|...+...+.+.
T Consensus 271 k~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~ 346 (2341)
T KOG0891|consen 271 KSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQT 346 (2341)
T ss_pred ccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhc
Confidence 0000000000001345555666665555 22267888899999999999999888766665554
Q ss_pred HhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccch
Q 001307 553 LVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM 632 (1103)
Q Consensus 553 l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l 632 (1103)
+....-..... -...+.|++.++.+++...|......++..+... . .......++-.++..++ |..
T Consensus 347 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~---~------~~~~l~e~l~~l~~rl~----~l~ 412 (2341)
T KOG0891|consen 347 LPTKDLARKKF-EKSVFTCIGLLASALGPADQKDLNKDILEQMFKC---T------LSDSLLERLFILSQRIP----KLG 412 (2341)
T ss_pred chhhhHHHHhc-chhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcC---C------chHHHHHHHHHHHHhcc----chh
Confidence 43311000111 1235778888888888554443335555554321 1 11244445555555543 333
Q ss_pred hhhhHHHHHhcc----c----CCCc-cc---cCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHH
Q 001307 633 SVVMPPLLQSAQ----L----KPDV-TI---TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYAD 700 (1103)
Q Consensus 633 ~~i~~~ll~~~~----~----~~~~-~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~ 700 (1103)
+.+.+.++.... . .+.. .+ .....- ...+-++ . .++-..|.++++.+..
T Consensus 413 ~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~--~~~~~~~-------------~----~~~~~~a~~~l~~~~~ 473 (2341)
T KOG0891|consen 413 QSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKA--ILQKTGD-------------S----TDDIQLAFKTLGGFKF 473 (2341)
T ss_pred hHHHHHHHHHHHHHHhCccccCccccCccchhcccch--hhhhccc-------------c----cHHHHHHHHHHhhhhh
Confidence 344444433221 1 1100 00 000000 0000000 0 0112346777777765
Q ss_pred HhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCC
Q 001307 701 ELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 780 (1103)
Q Consensus 701 ~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 780 (1103)
.... ...++.+++...+ ...++++|+.+..++..++.....+.++ .+-.+ +.+..++..+......++
T Consensus 474 ~~~~-~~~~~~~~~~~~~----~~~~~e~r~~~~l~~~~ll~~~~~~~~~------~~~~~-~~v~~vl~~ll~~aia~~ 541 (2341)
T KOG0891|consen 474 SGYS-LTLFVQQCVDSYL----EADDSEIRKNAALTCCELLKYDIICSQT------SPHAL-QVVKEVLSALLTVAIADT 541 (2341)
T ss_pred hhhh-HHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHhhhhhhhcc------cchHH-HHHHHHHHHHHHHhccCC
Confidence 4322 2333444444332 2347899999999988888766443221 12112 345556666666666777
Q ss_pred cHHHHHHHHHHHHHHHH-H----------------------------hCC--CCCHHHH-HHHHHHHHHHHHHHHHhHHH
Q 001307 781 DTEICASMLDSLNECIQ-I----------------------------SGP--LLDEGQV-RSIVDEIKQVITASSSRKRE 828 (1103)
Q Consensus 781 ~~~~~~~~~~~l~~~~~-~----------------------------~g~--~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 828 (1103)
++.++..++..+..... . .|. ..++.++ +.+.......++...
T Consensus 542 ~~~i~~~v~~~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~----- 616 (2341)
T KOG0891|consen 542 DPDIRIRVLSSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE----- 616 (2341)
T ss_pred CcchhhhHHhhhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-----
Confidence 77777777776651111 0 110 0111111 111111111110000
Q ss_pred HHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHH
Q 001307 829 RAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDD 908 (1103)
Q Consensus 829 ~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~ 908 (1103)
++ .-..+...++..+..++........||+++++..+...+.. .+..+-..++.++++
T Consensus 617 ---------~s------------g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~-~~s~~~~~~~~~~~e 674 (2341)
T KOG0891|consen 617 ---------FS------------GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQD-PSSGVEKAVLETIGE 674 (2341)
T ss_pred ---------hc------------chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhc-cchhhHHHHHHHHHH
Confidence 00 00112233444555555555556678888888888877743 344566778999999
Q ss_pred HHhhhhhhhhhhHHhHHHHHHH------------HHHHHHHHHHhhcCCCchHH--HHHHHHHHHHhhcCCCCCChhhhh
Q 001307 909 VAEQCREAALKYYETYLPFLLE------------AAVYGLGVCAEFGGSVVKPL--VGEALSRLNVVIRHPNALQPENLM 974 (1103)
Q Consensus 909 l~~~~~~~~~~~~~~~l~~l~~------------~a~~~lg~l~~~~~~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~ 974 (1103)
++...|..+..+.+.+++.+.+ ++.+++|.+....+..+.|+ +|.++..|.+.+..+ ....
T Consensus 675 L~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te-----~~~~ 749 (2341)
T KOG0891|consen 675 LCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTE-----QSST 749 (2341)
T ss_pred HHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHh-----hhhH
Confidence 9999998776676656665554 88899999999888777777 688888888888654 3456
Q ss_pred HHHHHHHHHHHHH
Q 001307 975 AYDNAVSALGKIC 987 (1103)
Q Consensus 975 ~~~na~~al~~l~ 987 (1103)
+|..++..+|...
T Consensus 750 ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 750 IRREAIRLLGLLG 762 (2341)
T ss_pred HHHHHHHHhhhhc
Confidence 6666777766443
No 72
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.73 E-value=6.5e-05 Score=83.59 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=144.1
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh-cCCcccchhhhHHHHH
Q 001307 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMEC 571 (1103)
Q Consensus 493 ~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~lr~~a~~~ 571 (1103)
.++.+.|+...++..|+..+..+...--+....|+-.+....++...|+...+++.|...+.. ..++.....--..+|+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 456689999999999999998765555567888888888888888888888888888777654 2334444455568999
Q ss_pred HHHHHHhhCh---hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc-CCcccchhhhhHHHHHhcccCC
Q 001307 572 ISLVGMAVGK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 647 (1103)
Q Consensus 572 l~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~p~l~~i~~~ll~~~~~~~ 647 (1103)
++.+.+.+.+ +....+-+.+++.+..+....+ .+..+|+++.++.+.+..+ ..+.+....++|.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 9999887652 2233444555666655444322 3567889988888888876 566666667777766331
Q ss_pred CccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHhcccccccC
Q 001307 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 725 (1103)
Q Consensus 648 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~--p~~~~~~~~l~~~l~~~~ 725 (1103)
-|+.. +.. -...+.|..+.+..+..+. ++++.++..+-+++....
T Consensus 169 -------------------lWe~~-----------gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWERR-----------GNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGGST-----------TTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhccC-----------CCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 12210 000 1234578888888777664 567778777777776543
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcH
Q 001307 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1103)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 782 (1103)
++ ..++..+..++..+ ..+.+.+++..++..++..+++....
T Consensus 216 ~D---~~gF~LL~~iv~~~------------p~~~l~~yl~~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 216 ND---HYGFDLLESIVENL------------PPEALEPYLKQIFTLLLTRLQSSKTE 257 (435)
T ss_dssp CH---HHHHHHHHHHHHHS-------------HHHHGGGHHHHHHHHHHHHHHC--H
T ss_pred cc---hHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 33 45666666666654 23345556666666666666654333
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.5e-05 Score=84.52 Aligned_cols=262 Identities=15% Similarity=0.273 Sum_probs=149.9
Q ss_pred chhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001307 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1103)
Q Consensus 142 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1103)
-++-+.++.+++++.+-+|..|+.++..++-..++.+++ -+|.|..-|.|+ ++.|..+|+..++.++..-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDp-Dp~V~SAAV~VICELArKn----- 212 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDP-DPSVVSAAVSVICELARKN----- 212 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCC-CchHHHHHHHHHHHHHhhC-----
Confidence 355566667777777777777777777666666665444 344555666676 7777777777777776642
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001307 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1103)
Q Consensus 222 ~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1103)
+..|-.+-|.+.+.+.. +.|..+....+..|+.+.-..|..-.+.++.+.+ ++.+ ..|+.++..+
T Consensus 213 PknyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~----li~s--------T~AmSLlYEC 277 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITE----LMES--------TVAMSLLYEC 277 (877)
T ss_pred CcccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHH----HHHh--------hHHHHHHHHH
Confidence 33455566666665543 3444555666666666665544433332222222 2211 1122222222
Q ss_pred HHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHH
Q 001307 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (1103)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1103)
+.. ++.. . |.... +.. ........+.
T Consensus 278 vNT-----------------VVa~--s-~s~g~------------------~d~----------------~asiqLCvqK 303 (877)
T KOG1059|consen 278 VNT-----------------VVAV--S-MSSGM------------------SDH----------------SASIQLCVQK 303 (877)
T ss_pred HHH-----------------heee--h-hccCC------------------CCc----------------HHHHHHHHHH
Confidence 220 0000 0 00000 000 0111223344
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~i 461 (1103)
+..++.+.+.+.|+-++.+++.++...+..+..+. +.++.+|.|.++.||-.|+..+-.+.. ...+..|
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eI 372 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEI 372 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHH
Confidence 55677788999999999999999988777555444 566778999999999999998866653 3455667
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
+..|+..+........|.....-+..+|....
T Consensus 373 Vk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 373 VKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 77777666552223555555555555655443
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.63 E-value=5.7e-05 Score=85.27 Aligned_cols=368 Identities=16% Similarity=0.236 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHH-HHH
Q 001307 246 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR-LFA 324 (1103)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~ 324 (1103)
.....++..+..++... ..+......++..+-....... +.+.....+..+..+.+...... .......|.+. ++|
T Consensus 17 ~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~-~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDK-QFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccc-ccchHHHHHHhHHHH
Confidence 45667788888887643 3444444555555554443222 45555666777777766421111 00112234443 788
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH-hh--------c-CCC---h
Q 001307 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA-YL--------A-APE---W 391 (1103)
Q Consensus 325 ~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l--------~-~~~---~ 391 (1103)
.++.......... .+ .+...-......+..+.+.++.+.--.. +..+.. ++ . +.. +
T Consensus 94 ~l~~~~~~~~~~~--------~~--~~~~~L~~~~~l~~~iv~~l~~~~q~~~-~~~~~~lf~~~~~~~~~~~~~~~~~~ 162 (415)
T PF12460_consen 94 RLFELALQASDQS--------SD--LDDRVLELLSRLINLIVRSLSPEKQQEI-LDELYSLFLSPKSFSPFQPSSSTISE 162 (415)
T ss_pred HHHHHHHhhcccc--------cc--cchHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHccccccCCCCcccccccc
Confidence 8877665432210 00 0112223455566666666653222221 222222 22 0 111 2
Q ss_pred HHHHHHHHHHHHHHhhcHHHH-HHhHHHHHHHHHhc-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001307 392 QKHHAALIALAQIAEGCAKVM-VKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1103)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~-~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1103)
..+.... .+..+..+.+... .+...+++..+... ....++..|..++.+++.++..+++ ...+..++..+...+
T Consensus 163 ~~~~~~~-l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 163 QQSRLVI-LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSI 238 (415)
T ss_pred ccccHHH-HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhh
Confidence 2332222 2333333333222 23555566655554 3445689999999999999987644 235566666666655
Q ss_pred -cCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh--------hh--
Q 001307 470 -DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE--------HF-- 538 (1103)
Q Consensus 470 -~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~--------~~-- 538 (1103)
.. ..+..+..+...+.-+...+=.. -.|....+++.++.++.+ +.+...+..+++.+..-.++ ..
T Consensus 239 ~~~-~~~~~~~~~~~~~~Wi~KaLv~R-~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vkl 314 (415)
T PF12460_consen 239 SSS-EDSELRPQALEILIWITKALVMR-GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKL 314 (415)
T ss_pred ccc-CCcchhHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhh
Confidence 22 34455566666655555443111 135667778888888876 56677788888887754222 11
Q ss_pred ---HhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001307 539 ---QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1103)
Q Consensus 539 ---~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1103)
..+|..++|.|.+......+. .|...+.+++.+...++++.+.++++.+++++++-.+. ++..++..++.
T Consensus 315 LykQR~F~~~~p~L~~~~~~~~~~----~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~~s~L~ 387 (415)
T PF12460_consen 315 LYKQRFFTQVLPKLLEGFKEADDE----IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVLLSSLE 387 (415)
T ss_pred HHhHHHHHHHHHHHHHHHhhcChh----hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Confidence 357778888888877654332 57778999999999999999999999999999984432 23347788888
Q ss_pred HHHHHHhHhcCCcccchhhhhHHHHHh
Q 001307 616 AWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1103)
Q Consensus 616 ~~~~l~~~~~~~~~p~l~~i~~~ll~~ 642 (1103)
++..+...-++-+.+|+..++|.+++.
T Consensus 388 tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 388 TLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 888888887788999999999999864
No 75
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.63 E-value=1.9e-05 Score=92.40 Aligned_cols=286 Identities=19% Similarity=0.204 Sum_probs=182.3
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-------HHHHHhH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-------RFLRRQL 270 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~ 270 (1103)
..+.+..|+..+..+..++.+. ......+| .+..++.++..++|..|+.+|.+++.... ..|..|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de---~~LDRVlP----Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY- 507 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDE---VKLDRVLP----YFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY- 507 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchH---HHHhhhHH----HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-
Confidence 4577889999999998887532 22344444 44556678899999999999988875321 122222
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcCCCCCcccccCCCCCccc
Q 001307 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDDPLWHSAETEDEDA 349 (1103)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~~~w~~~~~e~ed~ 349 (1103)
++|.+-.++.+. ....+|..--..|..+++. + . .|++-.... ...++.+.+. |..
T Consensus 508 --lfP~L~~l~~d~-~~~~vRiayAsnla~LA~t---A---~----rFle~~q~~~~~g~~n~~ns-----------et~ 563 (1431)
T KOG1240|consen 508 --LFPHLNHLLNDS-SAQIVRIAYASNLAQLAKT---A---Y----RFLELTQELRQAGMLNDPNS-----------ETA 563 (1431)
T ss_pred --hhhhhHhhhccC-ccceehhhHHhhHHHHHHH---H---H----HHHHHHHHHHhcccccCccc-----------ccc
Confidence 333333333221 3455676666677777662 1 0 122211111 0011111111 000
Q ss_pred cCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCC
Q 001307 350 GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD 429 (1103)
Q Consensus 350 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 429 (1103)
....++...+ .+...+-+.+..++.+++..+|++-+..|.-++.-.++ .+.=+-|++.+...|+|
T Consensus 564 -~~~~~~~~~~------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLND 628 (1431)
T KOG1240|consen 564 -PEQNYNTELQ------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLND 628 (1431)
T ss_pred -cccccchHHH------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcC
Confidence 0001111111 12223334455677777788999888777666544332 12224578999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHH
Q 001307 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1103)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~ 509 (1103)
.+++.|.+-...|.-++-..+.. ..-+-++|.+.++|.| +.+.|-..|..+|..+++.--- -.+++-++++...
T Consensus 629 kDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll--~K~~v~~i~~~v~ 702 (1431)
T KOG1240|consen 629 KDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLL--RKPAVKDILQDVL 702 (1431)
T ss_pred ccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhccc--chHHHHHHHHhhh
Confidence 99999999988887776666543 2345689999999999 8889999999999999986432 2478888999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 510 VLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 510 ~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
.++-.++.-+|..++..|..++...+.
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999887654
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.61 E-value=0.00066 Score=73.44 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=177.3
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1103)
..++.|++..-+.+. -.-|...+.++++.+....- -.+++...++.|...+.+.....|..|++.|.+++..
T Consensus 262 ~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv-------~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 262 LLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEENV-------GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 456667777777775 67788888888888765421 1345557888888888888888999999999999998
Q ss_pred chHHHH---HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001307 262 EPRFLR---RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1103)
Q Consensus 262 ~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1103)
+|..+. +.+..++. +.+ |..+.-.+.++.+. . ...-+.+++..+...+.+..|+
T Consensus 334 ~P~kv~vcN~evEsLIs---------d~N---r~IstyAITtLLKT---G------t~e~idrLv~~I~sfvhD~SD~-- 390 (898)
T COG5240 334 YPQKVSVCNKEVESLIS---------DEN---RTISTYAITTLLKT---G------TEETIDRLVNLIPSFVHDMSDG-- 390 (898)
T ss_pred CCceeeecChhHHHHhh---------ccc---ccchHHHHHHHHHc---C------chhhHHHHHHHHHHHHHhhccC--
Confidence 886543 22222221 223 33344455666652 1 1234555666555555554322
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001307 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1103)
Q Consensus 339 w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1103)
-..++..++..|+..++.+. . ..+.++...+ +.+..+-+.++..+++.+.+..|+.-.
T Consensus 391 ---------------FKiI~ida~rsLsl~Fp~k~-~-s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE---- 449 (898)
T COG5240 391 ---------------FKIIAIDALRSLSLLFPSKK-L-SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE---- 449 (898)
T ss_pred ---------------ceEEeHHHHHHHHhhCcHHH-H-HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH----
Confidence 23457788999998887432 2 2344444433 345678888888888888877665333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
..+..++..+.|.. --..+...|+-+.+..+..- -..|...+...++ - .+.-||.+|..||..|.-+.....
T Consensus 450 raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----L-EN~ivRsaAv~aLskf~ln~~d~~ 522 (898)
T COG5240 450 RALEVLCTFIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLI----L-ENNIVRSAAVQALSKFALNISDVV 522 (898)
T ss_pred HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----H-hhhHHHHHHHHHHHHhccCccccc
Confidence 33444444444432 22334445555555443211 0234444444443 2 467899999999999987665321
Q ss_pred ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001307 497 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1103)
Q Consensus 497 l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~ 531 (1103)
..+.+...+-.++++.+..+|+.|--++..+-
T Consensus 523 ---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 ---SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 23445556666888999999999877766654
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.60 E-value=1.1e-06 Score=91.07 Aligned_cols=186 Identities=19% Similarity=0.215 Sum_probs=123.4
Q ss_pred CCchhhHHHHHHHHHHHcCCCcchHHHHHHHH-------HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001307 352 SSNYSVGQECLDRLAIALGGNTIVPVASEQLP-------AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1103)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~-------~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1103)
|..+..+...+..+.....+....+.+.+.+. ..+.+..-..-..|+.+++.++...+..+.++.+.++|.++
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33444455555555544311233343333333 34445556677788999999999888888899999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh-HHHHHhhccCCCCcchHHHHHHHHHHHHhcCC--cccccC--
Q 001307 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP-- 499 (1103)
Q Consensus 425 ~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~i-l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~l~~-- 499 (1103)
..+.|++..+|.+|..+|..+++.++ +.+.+ ++.+....++ +++.+|..++..+..++...+ ...+..
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999999999999999999998764 23345 7777788888 899999999999999999887 333433
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhh
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDA 544 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~ 544 (1103)
.++.+.+.+.+.+.++++.||+.|-.++..+....++.....+..
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~ 218 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSM 218 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH------
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhc
Confidence 358899999999999999999999999999988887754444433
No 78
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.3e-05 Score=81.20 Aligned_cols=386 Identities=16% Similarity=0.179 Sum_probs=223.3
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC---cchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch-hhHH
Q 001307 108 LLQSIQLESAKSISKKLCDTVSELASNILPENG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLK 183 (1103)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~---w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~-~~~~ 183 (1103)
++-.+.+ .++.+...++..+|.+|-..-..+- ...+=+.+.++.. +...+|..+..++..++........ .+..
T Consensus 90 vl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSG 167 (550)
T ss_pred HHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhhcc
Confidence 3445555 7999999999999988765332222 2223334555544 4445667788888877765222111 0122
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGT- 261 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~i-p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~- 261 (1103)
.+. .+...-+. .+..+|..+..++..+....++ + +.++ ..-++++..++.+++.+++..++..+..++-.
T Consensus 168 aL~-pltrLaks-kdirvqrnatgaLlnmThs~En---R---r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 168 ALE-PLTRLAKS-KDIRVQRNATGALLNMTHSREN---R---RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred chh-hhHhhccc-chhhHHHHHHHHHHHhhhhhhh---h---hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 232 33333344 4888999999999888764321 1 1111 12345666677789999999999988877642
Q ss_pred -chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001307 262 -EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1103)
Q Consensus 262 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~ 340 (1103)
..+.+...-+.+++.+.+++.+ .++.++.+|-..+..++...++.-...+ ..-+|.+++.+..+.
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~------ag~lP~lv~Llqs~~------ 305 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVE------AGSLPLLVELLQSPM------ 305 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHh------cCCchHHHHHHhCcc------
Confidence 2344444445688888888854 4678888887778777663222111111 113455555553221
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc-h--HHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhH
Q 001307 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-V--PVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1103)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~-~--~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1103)
....-+...|+..++-+-+.... . .++-| +...+. .++-..+..|...|-.++...........
T Consensus 306 -----------~plilasVaCIrnisihplNe~lI~dagfl~p-LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 306 -----------GPLILASVACIRNISIHPLNEVLIADAGFLRP-LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred -----------hhHHHHHHHHHhhcccccCcccceecccchhH-HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 00111234466555544331111 1 11222 223333 34455777777777777654433222222
Q ss_pred H-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 417 E-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 ~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
. .-+|.+...+.|....||....-|+++++-.- .....+ -..++|.|+....+ .+.+||..|..+|.+|++....
T Consensus 374 esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDGPVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred hcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHH
Confidence 2 35677777888888888888777777776432 111112 34688888888888 8889999999999999876431
Q ss_pred -----ccc-cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 495 -----EIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 495 -----~~l-~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
+.. .|. +.+-..|..++.+....++..+..+|-.+...
T Consensus 451 YarviEawd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 451 YARVIEAWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHHhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 000 122 44445556666666666666666666666654
No 79
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.0034 Score=70.48 Aligned_cols=499 Identities=15% Similarity=0.167 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC--CHhHHHHH-HHHHHHhhhhhhh--
Q 001307 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESA-FLIFAQLSQYIGD-- 176 (1103)
Q Consensus 102 ~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~a-l~~l~~l~~~~~~-- 176 (1103)
.++++.+.+.+. .++.+|..+-..+-.+ .+-|.++-.+.+.+.+. +..+|..| ++.=..+......
T Consensus 3 ~ellqcf~qTld--ada~~rt~AE~~Lk~l-------eKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~ 73 (970)
T COG5656 3 EELLQCFLQTLD--ADAGKRTIAEAMLKDL-------EKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKR 73 (970)
T ss_pred HHHHHHHHHHhc--cCcchhhHHHHHHHHh-------hcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcc
Confidence 456666666666 4788887655444332 35678888888877654 34555544 4444444443221
Q ss_pred --hc----hh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHH
Q 001307 177 --TL----TP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (1103)
Q Consensus 177 --~l----~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~ 249 (1103)
.. .+ .-..++.-++..+.. ++.+-..+..+....+-.-+ .. .+.+| +.+.....+.+++.....
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~--sp~~tr~~l~ail~~I~seD---~p---s~~wg-l~p~~~nll~s~ea~~vy 144 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLY--SPEVTRTALNAILVNIFSED---KP---SDLWG-LFPKAANLLRSSEANHVY 144 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHhcccc---Cc---hhhcc-cchHHHHhhcccchhHHH
Confidence 01 11 112233333333333 23333455555555543211 11 13344 444555566677878888
Q ss_pred HHHHHHHHHHccch-------HHHHHhHHHHHHHHHHhhcCCCc--ch---HHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001307 250 EALELLIELAGTEP-------RFLRRQLVDVVGSMLQIAEAESL--EE---GTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1103)
Q Consensus 250 ~~~~~l~~l~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~--~~---~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1103)
.++.|+.++++.+. ..+.+.+..+++.+.++.++-.. +. ++-...+......|-+ .-|..... ..
T Consensus 145 ~gLlcl~elfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~lsa-~e 221 (970)
T COG5656 145 TGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDFLSA-IE 221 (970)
T ss_pred HHHHHHHHHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHHHcc-ch
Confidence 89999999988653 23445556677777766544221 11 1112222222233322 12221111 01
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh---HHHHHHHHHHHcCCC--------------cchHHHHH
Q 001307 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV---GQECLDRLAIALGGN--------------TIVPVASE 380 (1103)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~---a~~~l~~l~~~~~~~--------------~~~~~l~~ 380 (1103)
.+...+...+..+..+-..+.-. .|.|.+.-..+.++ |.-.+.++...++.. .++|.++.
T Consensus 222 ~f~sw~ql~l~i~qkplp~evls---ldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~ 298 (970)
T COG5656 222 TFSSWFQLSLRILQKPLPNEVLS---LDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILA 298 (970)
T ss_pred hhHHHHHHHHHHHcCCCCHHHhc---cChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222233333221110000 01111111111111 444455555544421 12333332
Q ss_pred ----HHHHhhcCCChHHHHHHHHHHHHHHhhcHH------HHHHhHHHHHH-HHHhcC-----------CCCChhHHH--
Q 001307 381 ----QLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLS-MVLNSF-----------RDPHPRVRW-- 436 (1103)
Q Consensus 381 ----~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~~~l~~i~~-~l~~~l-----------~d~~~~vr~-- 436 (1103)
.+..+-+.+-|-.- ..++.++...+.|.+ .+.||+.-++. .+++.+ .||...+|+
T Consensus 299 tffkqie~wgqgqLWlsd-~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~ 377 (970)
T COG5656 299 TFFKQIEEWGQGQLWLSD-IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYY 377 (970)
T ss_pred HHHHHHHHhhcCCeecch-HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhc
Confidence 22333344446443 456777777777664 45677776654 344443 234444443
Q ss_pred -----------HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC-C------CCcchHHHHHHHHHHHHhcCCc-ccc
Q 001307 437 -----------AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD-F------QNPRVQAHAASAVLNFSENCTP-EIL 497 (1103)
Q Consensus 437 -----------~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~-~------~~~~v~~~a~~al~~l~~~~~~-~~l 497 (1103)
+|+.++-.+...-+ +..+..+++.+...++. . .+++-.+.|...++++..-... +.+
T Consensus 378 df~d~g~spdlaal~fl~~~~sKrk----e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~ 453 (970)
T COG5656 378 DFFDNGLSPDLAALFFLIISKSKRK----EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPA 453 (970)
T ss_pred chhcCCCChhHHHHHHHHHHhcccc----hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchH
Confidence 34444433332222 23366777777776632 0 2334456666666666653221 112
Q ss_pred cCchH-HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 498 TPYLD-GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 498 ~~~l~-~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
...++ -+++.++..++++.-.++.+++..++.+-.-.++. ..+-+......+++++ ++..++..|-.++..+.
T Consensus 454 an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~n----n~lpv~ieAalAlq~fi 527 (970)
T COG5656 454 ANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKN----NHLPVMIEAALALQFFI 527 (970)
T ss_pred HHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhc----CCcchhhhHHHHHHHHH
Confidence 22232 24566666778877889999999999884332221 1223333334444433 34567777777777665
Q ss_pred H--hhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHh
Q 001307 577 M--AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1103)
Q Consensus 577 ~--~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~ 642 (1103)
. .+. ++|..+++.+|+-++.+.+ .++.| .+-.++..++..+.+++.||-+.++..+.+.
T Consensus 528 ~~~q~h-~k~sahVp~tmekLLsLSn-~feiD-----~LS~vMe~fVe~fseELspfa~eLa~~Lv~q 588 (970)
T COG5656 528 FNEQSH-EKFSAHVPETMEKLLSLSN-TFEID-----PLSMVMESFVEYFSEELSPFAPELAGSLVRQ 588 (970)
T ss_pred hchhhh-HHHHhhhhHHHHHHHHhcc-cccch-----HHHHHHHHHHHHhHHhhchhHHHHHHHHHHH
Confidence 4 334 7899999999999998766 34332 3445667788888999999999988887764
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.55 E-value=0.0068 Score=73.76 Aligned_cols=146 Identities=17% Similarity=0.316 Sum_probs=98.4
Q ss_pred CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc
Q 001307 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1103)
.+...+..++..+..+...+|..|+.+++.+++..+..+. -+.+...+..-+.|+ +..||.+|+..++.++-+.
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~--- 886 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSI--- 886 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhcc---
Confidence 4555666777777777788899999999988887655442 244555667777886 8899999999999888654
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001307 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1103)
Q Consensus 220 ~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 299 (1103)
.+.++.+.+.+.+.+.+..-.+|+.+++.+.++++..|.+-. +.+++--++.-. .|.+..+...+.+.+.
T Consensus 887 ------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv--~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 887 ------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRV--NDEEGNIKKLVRETFL 956 (1692)
T ss_pred ------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHh--ccchhHHHHHHHHHHH
Confidence 344555666666666677788899999999999987765422 122222222222 2333447777777665
Q ss_pred HH
Q 001307 300 TL 301 (1103)
Q Consensus 300 ~l 301 (1103)
.+
T Consensus 957 kl 958 (1692)
T KOG1020|consen 957 KL 958 (1692)
T ss_pred HH
Confidence 54
No 81
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.52 E-value=3.4e-07 Score=75.61 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccc--------cCCHHHHHHHHHHHHHHH
Q 001307 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (1103)
Q Consensus 42 Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~--------~l~~~~~~~ik~~ll~~l 112 (1103)
||++|+++++.+|+ |...|++++.+ +.++.+|++|+++||+.|.++ |. .++++.+..||+.+++.|
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 79999999994465 56999999965 668999999999999999998 88 999999999999999987
Q ss_pred h
Q 001307 113 Q 113 (1103)
Q Consensus 113 ~ 113 (1103)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 82
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.50 E-value=0.0035 Score=68.05 Aligned_cols=407 Identities=15% Similarity=0.135 Sum_probs=208.6
Q ss_pred HHHHHHHHHhhc--chhhHHHHHHHHHHHHHhc-ccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh
Q 001307 104 LKSMLLQSIQLE--SAKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 104 ik~~ll~~l~~e--~~~~vr~~~~~~i~~ia~~-~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
+-+-..+.+... +...-|+.+......++.. .+|+.+-.+++=.+..++++.+...|+....++..+.....+.+
T Consensus 23 ~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-- 100 (898)
T COG5240 23 LLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-- 100 (898)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh--
Confidence 333344455432 2333445444444444432 23334445677778888999999999887777776665433321
Q ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001307 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1103)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1103)
-....+.+-++...+..+|-.|++.|..++..- .++.+=+.+.+..-+..+..+..++-.--.+.-
T Consensus 101 ---m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~-----------tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp 166 (898)
T COG5240 101 ---MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE-----------TVYDFERYLNQAFVSTSMARRSAALVVAYHLLP 166 (898)
T ss_pred ---HHHHHHHHhhccCCccccccHHHHHHHHhcCcc-----------hhhhHHHHhhhhccccchhhhhhHHHHhhhhcc
Confidence 122344444454434478888988887776431 122233334444445555555555433223332
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCC----------cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhh
Q 001307 261 TEPRFLRRQLVDVVGSMLQIAEAES----------LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 330 (1103)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~----------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (1103)
......+....+.-+..+.+.+.+. ...-...-|+.++..+-+. -. -...+++..+....
T Consensus 167 ~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~----dk------ma~lklv~hf~~n~ 236 (898)
T COG5240 167 NNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT----DK------MAQLKLVEHFRGNA 236 (898)
T ss_pred ccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc----cH------HHHHHHHHHhhccc
Confidence 2222233333333333333221110 0111233455555544331 00 01122222221110
Q ss_pred cCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHc-CCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc-
Q 001307 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC- 408 (1103)
Q Consensus 331 ~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~- 408 (1103)
. .....+....+......+ ...+++..+.|++..++++.---+..-+..++..+++..
T Consensus 237 s--------------------mknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 237 S--------------------MKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred c--------------------cccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 0 000011111111111111 113566778888888888753333333444444444322
Q ss_pred HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHH
Q 001307 409 AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1103)
Q Consensus 409 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1103)
++ ..+++.+..+...|..+....|.+|++.|.+++...+..+ ...-+.+-..++| .+. ..+..|+..+
T Consensus 297 ~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd-~Nr---~IstyAITtL 364 (898)
T COG5240 297 GS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISD-ENR---TISTYAITTL 364 (898)
T ss_pred CH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhc-ccc---cchHHHHHHH
Confidence 22 4567788888888999999999999999999997665433 2233344445555 443 4567777777
Q ss_pred HhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHH
Q 001307 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS 568 (1103)
Q Consensus 489 ~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a 568 (1103)
+..-..+ -.+.++..+...+.+-+...+..++.++.+++-..+.....|+ .+|...|.+. ....+|..+
T Consensus 365 LKTGt~e----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l----~FL~~~L~~e---Gg~eFK~~~ 433 (898)
T COG5240 365 LKTGTEE----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL----DFLGSSLLQE---GGLEFKKYM 433 (898)
T ss_pred HHcCchh----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH----HHHHHHHHhc---ccchHHHHH
Confidence 7665433 3556666665555554555566678888888776665544444 3444444332 234466667
Q ss_pred HHHHHHHHHhh
Q 001307 569 MECISLVGMAV 579 (1103)
Q Consensus 569 ~~~l~~i~~~~ 579 (1103)
+++++.+....
T Consensus 434 Vdaisd~~~~~ 444 (898)
T COG5240 434 VDAISDAMEND 444 (898)
T ss_pred HHHHHHHHhhC
Confidence 77777665444
No 83
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.49 E-value=0.0078 Score=71.77 Aligned_cols=226 Identities=18% Similarity=0.139 Sum_probs=140.7
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHh-----h----cchhhHHHHHHHHHHHHHhcccCC
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ-----L----ESAKSISKKLCDTVSELASNILPE 138 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~-----~----e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1103)
++..++|+-|++-++..+..+ ...++.+..+.+...++..+. + +....||.+.+++++.+.++..+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h----~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~- 162 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTH----GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE- 162 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHh----cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-
Confidence 788999999999999999887 455555555554444444332 1 23457999999999999997655
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
....+.+..+.+++..++++.|++++..+......-.+.+...++.+++.+..++.|. +..||..|...+..+......
T Consensus 163 s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~~~aa~~l~~~~s~~v~ 241 (1549)
T KOG0392|consen 163 SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVRSVAAQFLVPAPSIQVK 241 (1549)
T ss_pred HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHhhhhhHHHHh
Confidence 5667778888899999999999999988887766433444456778899999999997 999999999888877765421
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc-hHHHH--H-hHHHHHHHHHHhhcCCCcchHHHHHH
Q 001307 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE-PRFLR--R-QLVDVVGSMLQIAEAESLEEGTRHLA 294 (1103)
Q Consensus 219 ~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-~~~~~--~-~~~~l~~~l~~~~~~~~~~~~~r~~a 294 (1103)
........++..+...+..... -.+. .......+.+++... ...+. . ....+++-++..+. +.-..+|..+
T Consensus 242 -l~~~~i~~lv~~l~~~l~~ldd-l~~s-~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~--~~i~sv~~a~ 316 (1549)
T KOG0392|consen 242 -LMVQKIAKLVHTLWSFLLELDD-LSSS-TASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLR--HTISSVRRAA 316 (1549)
T ss_pred -hhHhHHHHHHHHHHHHHHHhhh-cchh-hHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHH--HHHHHHHHHH
Confidence 1111222222233333322211 1111 111222333333221 11110 0 11133444444442 2346678889
Q ss_pred HHHHHHHHHh
Q 001307 295 IEFVITLAEA 304 (1103)
Q Consensus 295 ~~~l~~l~~~ 304 (1103)
++++..+.+.
T Consensus 317 l~~l~~lle~ 326 (1549)
T KOG0392|consen 317 LETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHhc
Confidence 9999998885
No 84
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=5.1e-06 Score=84.04 Aligned_cols=356 Identities=15% Similarity=0.154 Sum_probs=206.1
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc
Q 001307 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1103)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 262 (1103)
......+...+++. +..++.++..+++++...++...-.-.+..+-+.+.+ . ..+..+++..++.|+..++...
T Consensus 84 res~epvl~llqs~-d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q----m-mtd~vevqcnaVgCitnLaT~d 157 (550)
T KOG4224|consen 84 RESNEPVLALLQSC-DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ----M-MTDGVEVQCNAVGCITNLATFD 157 (550)
T ss_pred hhhhhHHHHHHhCc-chhhhhhhhhhhccceeccCCceEEEeccChHHHHHH----h-cCCCcEEEeeehhhhhhhhccc
Confidence 33444556677786 8999999999999988766433211112222222322 2 2345567777888888777543
Q ss_pred hHHHH-HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcccc
Q 001307 263 PRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPLWH 340 (1103)
Q Consensus 263 ~~~~~-~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~w~ 340 (1103)
..... .+...+.+ +..+. +..+..++..+.+.+..+...++. |+ ..+ ..-+|.++..+...+-+
T Consensus 158 ~nk~kiA~sGaL~p-ltrLa--kskdirvqrnatgaLlnmThs~En-----Rr--~LV~aG~lpvLVsll~s~d~d---- 223 (550)
T KOG4224|consen 158 SNKVKIARSGALEP-LTRLA--KSKDIRVQRNATGALLNMTHSREN-----RR--VLVHAGGLPVLVSLLKSGDLD---- 223 (550)
T ss_pred cchhhhhhccchhh-hHhhc--ccchhhHHHHHHHHHHHhhhhhhh-----hh--hhhccCCchhhhhhhccCChh----
Confidence 22111 11222222 22333 334677888888888877653221 11 011 12355565555433211
Q ss_pred cCCCCCccccCCCchhhHHHHHHHH-----HHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHh
Q 001307 341 SAETEDEDAGESSNYSVGQECLDRL-----AIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (1103)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l-----~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 415 (1103)
....+..+++.+ .+..= -+.-|.++|.+.+++.+++.+++..|-.+|+.++........-.
T Consensus 224 -------------vqyycttaisnIaVd~~~Rk~L-aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 224 -------------VQYYCTTAISNIAVDRRARKIL-AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred -------------HHHHHHHHhhhhhhhHHHHHHH-HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 111122222221 11110 12235577777888889999999999999998876533211111
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc
Q 001307 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1103)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1103)
-..-+|.++..++++....-.+...|+..++-+-..+. .-.-..++..|++.|....+.+++-+|...|.+++.....+
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 11245777888888877666777778877775433221 01122345556677766346679999999999998654433
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHH
Q 001307 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1103)
Q Consensus 496 ~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1103)
.-.-+=..-++.+..++-+.+..+|+..-.|++.++.. +.+..|+ ..++|.|+... +++...+|+.|-++++
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t----~s~s~Ev~gNaAaAL~ 442 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWT----GSESEEVRGNAAAALI 442 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeeccc----CccchhhcccHHHHHH
Confidence 11111123467777777888899999999999988754 2333333 34777777764 3455678888888888
Q ss_pred HHHHhh
Q 001307 574 LVGMAV 579 (1103)
Q Consensus 574 ~i~~~~ 579 (1103)
.+..-+
T Consensus 443 Nlss~v 448 (550)
T KOG4224|consen 443 NLSSDV 448 (550)
T ss_pred hhhhhh
Confidence 776544
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=5e-05 Score=80.86 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=133.7
Q ss_pred hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001307 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1103)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~ 454 (1103)
.+.++..+.....+..|+.|......++.+.....-.-.+.+..++..+.....||+..+|..|+.+|+..+..++...
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv- 293 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV- 293 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-
Confidence 3444444444445667999988777777665431111114567788888888999999999999999999999877776
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
..|.+.++..++.+|-|..+..|+..++.+|..+.+......+.+|+-++--.+..++++.+.+.|-.++..+|.++...
T Consensus 294 ~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 294 RTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 68899999999999887567889999999999999988777789999999999999999999999999999999999888
Q ss_pred hhhhHhhH
Q 001307 535 QEHFQKYY 542 (1103)
Q Consensus 535 ~~~~~~~~ 542 (1103)
|.....++
T Consensus 374 g~~~e~~F 381 (533)
T KOG2032|consen 374 GGGWEEFF 381 (533)
T ss_pred CCCchhhh
Confidence 76655433
No 86
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.0035 Score=71.98 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh-ccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHH
Q 001307 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1103)
Q Consensus 432 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~-l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~ 510 (1103)
...-.+++.++..++++++... ..+++.++...... +.. .++..-..+...++.++..++.. .-|+..-++.|++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~-~~~i~rl~~~~asik~S~-~n~ql~~Tss~~igs~s~~l~e~--P~~ln~sl~~L~~ 556 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETE-STWIPRLFETSASIKLSA-PNPQLLSTSSDLIGSLSNWLGEH--PMYLNPSLPLLFQ 556 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcch-hHHHHHHHHhcccccccc-CChhHHHHHHHHHHHHHHHHhcC--CcccCchHHHHHH
Confidence 4566788888888998887654 44544444444332 222 46777788888888888877643 2356666666666
Q ss_pred HhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHH
Q 001307 511 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (1103)
Q Consensus 511 ~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~ 590 (1103)
.+.. ++.-..+...+..+++.++.++.||.+.++......+.+..- ....|.+.+.++|.+......|....|+..
T Consensus 557 ~Lh~--sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~--~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 557 GLHN--SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA--KDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HhcC--chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc--CchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 6653 344456777899999999999999999999999998876322 234577889999999988887888889988
Q ss_pred HHHHHHH
Q 001307 591 VMEVLMS 597 (1103)
Q Consensus 591 i~~~l~~ 597 (1103)
+++.++.
T Consensus 633 lin~il~ 639 (982)
T KOG2022|consen 633 LINPILS 639 (982)
T ss_pred HHHHHHH
Confidence 8888776
No 87
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.45 E-value=1.1e-05 Score=94.82 Aligned_cols=209 Identities=14% Similarity=0.223 Sum_probs=167.0
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhh
Q 001307 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1103)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (1103)
+.++++.+-+.+...+.|.+|+.|..|+..+..+.+... +....+...+...+-..+.|.|..|-..++.+|..++..+
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 356667777778888889999999999999888877655 2233445555566666788999999999999999999999
Q ss_pred chhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001307 450 GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1103)
Q Consensus 450 ~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~ 529 (1103)
+..+ ..|...++|.++..+.+ ..+.+|..+..++..++.. ..+..+++.+...+.+.++.++......++.
T Consensus 327 r~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 327 RPLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred chhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 8887 79999999999999999 8889999999998888873 3456677788888899999999999999998
Q ss_pred HHHhhhh--hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHH
Q 001307 530 VADSSQE--HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1103)
Q Consensus 530 l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~ 592 (1103)
.....+. .+..-...++|.+..... +....+|..|.++++.+.+.+|.+.|..++..+-
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 8877763 234556778888877653 2345689999999999999999776666655444
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.44 E-value=6.9e-07 Score=75.63 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh
Q 001307 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 434 vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~ 513 (1103)
-|..++.+|+.++..++..+ .+|++.++|.++.+++| ++++||..||.+|.+++...+.+ +.+|++.+++.|.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 47889999999999998887 89999999999999999 99999999999999999998866 56799999999999999
Q ss_pred cCChhHHHHH
Q 001307 514 NGKQMVQEGA 523 (1103)
Q Consensus 514 ~~~~~v~~~a 523 (1103)
++++.||..|
T Consensus 79 D~d~~Vr~~a 88 (97)
T PF12755_consen 79 DPDENVRSAA 88 (97)
T ss_pred CCchhHHHHH
Confidence 9999999776
No 89
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.35 E-value=2.6e-06 Score=78.10 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=89.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
+++.+.+.+.+.+|..|..++.+++.++...++.....+. .+++.+.+.+.|++++++..++++|++++...+.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3445556667788999999999999999876655545555 788999999999999999999999999998764433112
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHh
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
.-..+++.+.+.+++ .+..++..++++|.++++
T Consensus 88 ~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 334589999999998 788999999999998864
No 90
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00045 Score=73.06 Aligned_cols=453 Identities=15% Similarity=0.147 Sum_probs=244.0
Q ss_pred hhhHHHHHHHHHHHHHhcccCC----CCcchhHH--------HHH-HhhcCCCHhHHHHHHHHHHHhhhhhh--------
Q 001307 117 AKSISKKLCDTVSELASNILPE----NGWPELLP--------FMF-QCVSSDSVKLQESAFLIFAQLSQYIG-------- 175 (1103)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~----~~w~~ll~--------~l~-~~~~s~~~~~r~~al~~l~~l~~~~~-------- 175 (1103)
...||..+-+++....+. ++. +.|.-++| .++ -.++++++..|..|+.++..+.+...
T Consensus 9 ~akvr~~al~~~~~~~~~-~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKS-IEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhh-hhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 344555555555444432 111 46655554 222 23578889999999999988876432
Q ss_pred ---hhchh-------hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCH
Q 001307 176 ---DTLTP-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE 245 (1103)
Q Consensus 176 ---~~l~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~ 245 (1103)
..|.+ .+.+....++..+..+..+.+-...++|+..++..-+- ...--.++-.+.+.+...+.+.++
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~---~~l~~~~~~~~~~~ik~~i~~~d~ 164 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY---DRLKLSLLTKVWNQIKPYIRHKDV 164 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 12332 34455566666665544677778999999999976431 111234566777888888889999
Q ss_pred HHHHHHHHHHHHHHccch---HHH-------------HHhH--HH---------------------------HHHHHH--
Q 001307 246 ATAQEALELLIELAGTEP---RFL-------------RRQL--VD---------------------------VVGSML-- 278 (1103)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~---~~~-------------~~~~--~~---------------------------l~~~l~-- 278 (1103)
.++..++..+..++..+. +.- .+|. .+ ++..+.
T Consensus 165 ~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 999999988887776541 100 0000 00 000000
Q ss_pred ---------------HhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001307 279 ---------------QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1103)
Q Consensus 279 ---------------~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~ 343 (1103)
..+........+|..+++.+..++.+ -++.+ -+.-++...+...+.+.
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~----~~~~~---~~~~~l~RvI~~~~~~~---------- 307 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY----FSMTQ---AYLMELGRVICKCMGEA---------- 307 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHccCCCC----------
Confidence 00000112234566666666666652 11111 23333333333332221
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcC----CCcch-HHHHHHH----------HHhhcCCChHHHHHHHHHHHHHHhhc
Q 001307 344 TEDEDAGESSNYSVGQECLDRLAIALG----GNTIV-PVASEQL----------PAYLAAPEWQKHHAALIALAQIAEGC 408 (1103)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~----~~~~~-~~l~~~l----------~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1103)
..+.+.-+..+++.+...++ ++..- +....-+ .....+.....+.+++.++..|....
T Consensus 308 -------~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 308 -------DPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA 380 (728)
T ss_pred -------ChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh
Confidence 12234445566666655443 11110 0000000 01111223344555566666554332
Q ss_pred HHHHHHhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHH
Q 001307 409 AKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1103)
Q Consensus 409 ~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1103)
...+..--....+.++.+-.|. +..|+.+|..+++.+.-+-+-.....+.......++..+.| +.-.+|.++.+++++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGN 459 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhh
Confidence 2222122224455555555554 55678888888887775544333345667777888888888 777899999999999
Q ss_pred HHhcCCccc------ccCchHHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHH-HHhhcC
Q 001307 488 FSENCTPEI------LTPYLDGIVSKLLVLLQN---GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNAT 557 (1103)
Q Consensus 488 l~~~~~~~~------l~~~l~~ll~~L~~~l~~---~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~-~l~~~~ 557 (1103)
+...+-... -..+...++..++..... .+.+|+..++.++|++......-..+-+..+++.=+. .+....
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~ 539 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL 539 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee
Confidence 876543221 112344455555544322 3578999999999999876664433444444433222 222222
Q ss_pred CcccchhhhHHHHHHHHHHHh--hChhhhhhhHHHHHHHHHHHh
Q 001307 558 DKSNRMLRAKSMECISLVGMA--VGKDKFRDDAKQVMEVLMSLQ 599 (1103)
Q Consensus 558 ~~~~~~lr~~a~~~l~~i~~~--~~~~~~~~~~~~i~~~l~~l~ 599 (1103)
.+....+|-.+.-++|.+.+. +. -.-.+.++.+.+.+..+.
T Consensus 540 ~~~~~kV~WNaCya~gNLfkn~a~~-lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 540 TEAAMKVRWNACYAMGNLFKNPALP-LQTAPWASQAFNALTSLV 582 (728)
T ss_pred cccccccchHHHHHHHHhhcCcccc-ccCCCchHHHHHHHHHHH
Confidence 334566788888888887642 21 112356777777776643
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.32 E-value=1.2e-06 Score=66.53 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHh
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l 445 (1103)
|.+|.+|+.+||.+++.+++.+.++++++++.+...++|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999975
No 92
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.0022 Score=73.05 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 416 LEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 416 l~~i~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
++.++|.+...|+++ ++.+...||+||..+++.+++....-.....+|.++..|.....-.|.+.+..+|..+.+..+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 468899999999876 7899999999999999999887633334458888888776545678999999999999888776
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHH
Q 001307 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1103)
Q Consensus 495 ~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1103)
.++.. .. +...+..++=-+..++..|+...+.++..+..+--.|+-..+|.|..+++..+. ..-..+.-|+..
T Consensus 289 AiL~A--G~-l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~----k~ies~~ic~~r 361 (1051)
T KOG0168|consen 289 AILQA--GA-LSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK----KPIESVCICLTR 361 (1051)
T ss_pred HHHhc--cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc----hhHHHHHHHHHH
Confidence 54432 11 223334444445677889999999999888766556777889999999976422 233445667777
Q ss_pred HHHhhC--hhhhhhhH-HHHHHHHHHHhcC-CCCCCCchhhHHHHHHHHHHhHhcCCccc
Q 001307 575 VGMAVG--KDKFRDDA-KQVMEVLMSLQGS-QMETDDPTTSYMLQAWARLCKCLGQDFLP 630 (1103)
Q Consensus 575 i~~~~~--~~~~~~~~-~~i~~~l~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 630 (1103)
++..+. .+++...+ ..++.-..++..- ...-.......++..+..++..++-.|..
T Consensus 362 i~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~t 421 (1051)
T KOG0168|consen 362 IADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRT 421 (1051)
T ss_pred HHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHH
Confidence 775432 23333222 1222222222211 00011234456666666666665544443
No 93
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=98.25 E-value=9.6e-05 Score=67.78 Aligned_cols=155 Identities=28% Similarity=0.406 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhhcch-hhHHHHHHHHHHHHHhcc--cCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhh-hhhhhhc
Q 001307 103 SLKSMLLQSIQLESA-KSISKKLCDTVSELASNI--LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS-QYIGDTL 178 (1103)
Q Consensus 103 ~ik~~ll~~l~~e~~-~~vr~~~~~~i~~ia~~~--~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~-~~~~~~l 178 (1103)
++|..|+.+|..+.. ...-+.++++++.+|... ++++.|++|...+.... ..++ +.|+.++..+. ...++-+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 578899999987533 345566666777666654 47789999998887755 2222 56999999998 5566667
Q ss_pred hhhHHHHHHHHHHhhCCCCChHHH--HHHH-HHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q 001307 179 TPHLKHLHAVFLNCLTNSNNPDVK--IAAL-NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALEL 254 (1103)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr--~~a~-~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~-~~~~~~~~~ 254 (1103)
.+.+..+++.+.+.|.++.+.++. ..|+ .++...+..++.....+.+++++|.+++.+....+.+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 788999999999999997444443 3344 444556666655556788899999999999999988877 677778777
Q ss_pred HHHHHcc
Q 001307 255 LIELAGT 261 (1103)
Q Consensus 255 l~~l~~~ 261 (1103)
+-.++..
T Consensus 159 ~e~~v~~ 165 (174)
T PF04510_consen 159 FESFVSR 165 (174)
T ss_pred HHHHHHH
Confidence 7666543
No 94
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0013 Score=74.63 Aligned_cols=424 Identities=16% Similarity=0.206 Sum_probs=240.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCChhHHHHHHHHHHHhcccCCCCccccCCHHH
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1103)
+...+....+++...|.-|-..+..+.- +.+..+++.-+. ++.++.+|..|+++..++...+ .. -..
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~------~~~ 157 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PD------LVE 157 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hh------hcc
Confidence 3445566778888899888877655443 223344444443 3778999999999998876543 11 112
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchh----HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh
Q 001307 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL----LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1103)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~l----l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (1103)
...+-..|-+.+.+ .++.|-..+..++..|....-. ..-.++ +..+++.+..-+. =+-+.++..+..+.+.
T Consensus 158 ~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 158 DSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPK 232 (734)
T ss_pred ccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCC
Confidence 22333444455554 5777777777788877764321 233333 3333333333222 1235667777777665
Q ss_pred hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001307 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1103)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~ 256 (1103)
.- .....++..+...+.+. +..|-..+++.+...+..+.. .....+...-| .+...+.+ .++...-++.-+.
T Consensus 233 d~-~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~----pl~tlls~-~~e~qyvaLrNi~ 304 (734)
T KOG1061|consen 233 DS-REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAP----PLVTLLSS-ESEIQYVALRNIN 304 (734)
T ss_pred Cc-hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-HHHHHHHHhcc----cceeeecc-cchhhHHHHhhHH
Confidence 43 24667888888888887 888889999999988877532 11112222222 22333333 3466677888888
Q ss_pred HHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCC
Q 001307 257 ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1103)
Q Consensus 257 ~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1103)
-+....|+.+...+..++- . -...-.++..=++++..++.. ..+.+++..+..+-.+.+
T Consensus 305 lil~~~p~~~~~~~~~Ff~------k-ynDPiYvK~eKleil~~la~~------------~nl~qvl~El~eYatevD-- 363 (734)
T KOG1061|consen 305 LILQKRPEILKVEIKVFFC------K-YNDPIYVKLEKLEILIELAND------------ANLAQVLAELKEYATEVD-- 363 (734)
T ss_pred HHHHhChHHHHhHhHeeee------e-cCCchhhHHHHHHHHHHHhhH------------hHHHHHHHHHHHhhhhhC--
Confidence 8888888766654433221 1 111234555556666666551 233445555544332221
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHh
Q 001307 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKN 415 (1103)
Q Consensus 337 ~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~ 415 (1103)
....+.+..+++.++.... +. ...+..+.++++ ..+.-+ ..++..+..+...++. .
T Consensus 364 ---------------~~fvrkaIraig~~aik~e-~~--~~cv~~lLell~~~~~yvv-qE~~vvi~dilRkyP~----~ 420 (734)
T KOG1061|consen 364 ---------------VDFVRKAVRAIGRLAIKAE-QS--NDCVSILLELLETKVDYVV-QEAIVVIRDILRKYPN----K 420 (734)
T ss_pred ---------------HHHHHHHHHHhhhhhhhhh-hh--hhhHHHHHHHHhhccccee-eehhHHHHhhhhcCCC----c
Confidence 1122345667777766553 22 333344444443 112211 1223333333333332 2
Q ss_pred HHHHHHHHHhcCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 416 LEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 416 l~~i~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
.+.+++.+...+.. ++|..|.+-.|.+|+.++.++. ...++..+++.+.| ....||..-..+...++-..++
T Consensus 421 ~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~d-E~~~Vql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 421 YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKD-ETAEVQLELLTAAIKLFLKKPT 493 (734)
T ss_pred hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhccc-chHHHHHHHHHHHHHHHhcCCc
Confidence 24555555555544 5788999999999999988754 44788888899988 6788887776666655433332
Q ss_pred ccccCchHHHHHHHHHHh--hcCChhHHHHHHHH
Q 001307 495 EILTPYLDGIVSKLLVLL--QNGKQMVQEGALTA 526 (1103)
Q Consensus 495 ~~l~~~l~~ll~~L~~~l--~~~~~~v~~~al~a 526 (1103)
--+.++..++... +..++.+|..++.-
T Consensus 494 -----~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y 522 (734)
T KOG1061|consen 494 -----ETQELLQGVLPLATADTDNPDLRDRGLIY 522 (734)
T ss_pred -----cHHHHHHHHHhhhhccccChhhhhhHHHH
Confidence 2344455554432 23457888776543
No 95
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.10 E-value=0.0023 Score=71.50 Aligned_cols=228 Identities=13% Similarity=0.160 Sum_probs=132.7
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh----c-CChhHHHHHHHHHHH
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ----N-GKQMVQEGALTALAS 529 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~----~-~~~~v~~~al~al~~ 529 (1103)
.++...++..|+..+.. +...--+..+.|+.+++...+.. +.|+...+++.|...+. + +++..-...++++|.
T Consensus 21 ~p~~~~ll~~Lf~~i~~-~~s~ENeylMk~iMRvl~~~~e~-~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEK-PGSAENEYLMKCIMRVLSVLQED-ILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp TCCHHHHHHHHHHHHHT-T-STC-HHHHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 56778888888888765 22222244566666666666644 56888888877777653 3 357778889999999
Q ss_pred HHHhhhh----hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH--HhcCCC
Q 001307 530 VADSSQE----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQM 603 (1103)
Q Consensus 530 l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~--l~~~~~ 603 (1103)
+++...+ ....+-+.++|.+..+|+++ ...+-..+++.++.+...-....+.+....+++.++. ++..
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d----V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~-- 172 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQD----VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER-- 172 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS--
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc--
Confidence 9886543 23356778889999988763 2234445556665555433212222222233333332 2211
Q ss_pred CCCCchhhHHHHHHHHHHhHhcCCcc--cchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeee
Q 001307 604 ETDDPTTSYMLQAWARLCKCLGQDFL--PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIK 681 (1103)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~--p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 681 (1103)
.. -...+.+.+..+.+.-+..+. .++..++....+.+.++.+ |
T Consensus 173 ~g---niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~------------------D-------------- 217 (435)
T PF03378_consen 173 RG---NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN------------------D-------------- 217 (435)
T ss_dssp TT---THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC------------------H--------------
T ss_pred CC---CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc------------------c--------------
Confidence 11 124555666666666665553 6667776666666654321 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh-hccccHHHHHHHhcccccccCCHHHHHH
Q 001307 682 TSVLEEKATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKA 732 (1103)
Q Consensus 682 ~~~~~~k~~A~~~l~~l~~~~~~-~~~p~~~~~~~~l~~~l~~~~~~~vr~~ 732 (1103)
..+++.|..+..+++. .+.||+..++..+...+.....+...+.
T Consensus 218 -------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~ 262 (435)
T PF03378_consen 218 -------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKR 262 (435)
T ss_dssp -------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHH
T ss_pred -------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHH
Confidence 2367789999999986 6899999999998888875444444443
No 96
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0092 Score=67.29 Aligned_cols=351 Identities=11% Similarity=0.162 Sum_probs=191.3
Q ss_pred CCcchhHHHHHHhhc-CCCHhHHHHHHHHHHHhhhhhh-hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhc
Q 001307 139 NGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~-s~~~~~r~~al~~l~~l~~~~~-~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1103)
...|.++-.+++..- +.+-..+..-+..+..+.+..+ ..+.+.+--+...+.+-|++| +.-+|-..++.++.+=+
T Consensus 52 e~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHP-NEyiRG~TLRFLckLkE-- 128 (948)
T KOG1058|consen 52 EDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHP-NEYIRGSTLRFLCKLKE-- 128 (948)
T ss_pred CCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCc-hHhhcchhhhhhhhcCc--
Confidence 467887777776544 3444555554555555555443 234444555667778888897 99999999888775532
Q ss_pred CCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 001307 217 TSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIE 296 (1103)
Q Consensus 217 ~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~ 296 (1103)
.+++..+++.+.++++....-+|..|+-++..+-.. ..++.|-.++++...+. .+.|+..+..|+-
T Consensus 129 ---------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~----~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 129 ---------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLL----TEQDPSCKRNAFL 194 (948)
T ss_pred ---------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHH----hccCchhHHHHHH
Confidence 345556777788888888899999988887777654 34555556666665543 2346777777765
Q ss_pred HHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchH
Q 001307 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP 376 (1103)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 376 (1103)
.+..+-.. + .-+|+...+.. -+.|. ....-+..+.+...+..-+ .--.
T Consensus 195 ~L~~~D~E--------r-Al~Yl~~~idq----------i~~~~-----------~~LqlViVE~Irkv~~~~p--~~~~ 242 (948)
T KOG1058|consen 195 MLFTTDPE--------R-ALNYLLSNIDQ----------IPSFN-----------DSLQLVIVELIRKVCLANP--AEKA 242 (948)
T ss_pred HHHhcCHH--------H-HHHHHHhhHhh----------ccCcc-----------HHHHHHHHHHHHHHHhcCH--HHhh
Confidence 55443221 0 00111111110 01110 0011112222222222111 1112
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
..+..+..++++.+..+++-|...+-.++.. +..++.-...++..+.. .++-+++-..+.-|..+.... ..
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~k---esdnnvklIvldrl~~l~~~~-----~~ 313 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAASTYIDLLVK---ESDNNVKLIVLDRLSELKALH-----EK 313 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHh---ccCcchhhhhHHHHHHHhhhh-----HH
Confidence 2334444555555666665554444333322 22333333333333322 233344444444454444211 34
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh---cCChhHHHHHHHHHHHHHHh
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ---NGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~---~~~~~v~~~al~al~~l~~~ 533 (1103)
.+..++-.+++.|+. ++-.||..+....-.+.+...-+.+..++.. .+.+.-+ +.+...|...+.++.+.+..
T Consensus 314 il~~l~mDvLrvLss-~dldvr~Ktldi~ldLvssrNvediv~~Lkk---e~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSRNVEDIVQFLKK---EVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhccHHHHHHHHHH---HHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 566667777788888 8899999999888877765443222222221 1111111 12345677777777777654
Q ss_pred hhhhhHhhHhhhhHHHHHHHhh
Q 001307 534 SQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 534 ~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
|..+..++++.+...+..
T Consensus 390 ----Fp~~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 390 ----FPEVAATVVSLLLDFISD 407 (948)
T ss_pred ----ChHHHHHHHHHHHHHhcc
Confidence 556888999999998865
No 97
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.017 Score=58.50 Aligned_cols=346 Identities=16% Similarity=0.164 Sum_probs=187.1
Q ss_pred CHhHHHH---HHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001307 156 SVKLQES---AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1103)
Q Consensus 156 ~~~~r~~---al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~l 232 (1103)
+.++|+. +..+|..+.+.... ....+++.+-+..+|..+ +..|+..+++.++.+++..+.+...+...-.-..+
T Consensus 53 NenhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaei 129 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEI 129 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhH
Confidence 4456666 45555555554222 124567788888999997 89999999999999998764322111111111246
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHH-------HHHhhcCCCcchHHHHHHHHHHHHHHHhh
Q 001307 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGS-------MLQIAEAESLEEGTRHLAIEFVITLAEAR 305 (1103)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~-------l~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 305 (1103)
++.+..++..++.++...+.+.+..++.. +. -+..+++. +.++.. .-++-+|...++.+..+.+.
T Consensus 130 lklildcIggeddeVAkAAiesikrialf-pa----aleaiFeSellDdlhlrnlaa--kcndiaRvRVleLIieifSi- 201 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIALF-PA----ALEAIFESELLDDLHLRNLAA--KCNDIARVRVLELIIEIFSI- 201 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HH----HHHHhcccccCChHHHhHHHh--hhhhHHHHHHHHHHHHHHhc-
Confidence 67777788888999999999999887652 22 22222220 000000 01234566666777666652
Q ss_pred hccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHH--HHHHHH
Q 001307 306 ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV--ASEQLP 383 (1103)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--l~~~l~ 383 (1103)
.|..... ---..++..+..-|...+| .-......+....|+..-.+.++++. ++..+.
T Consensus 202 --Spesane--ckkSGLldlLeaElkGteD----------------tLVianciElvteLaeteHgreflaQeglIdlic 261 (524)
T KOG4413|consen 202 --SPESANE--CKKSGLLDLLEAELKGTED----------------TLVIANCIELVTELAETEHGREFLAQEGLIDLIC 261 (524)
T ss_pred --CHHHHhH--hhhhhHHHHHHHHhcCCcc----------------eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH
Confidence 2321110 0112344444443433221 11111122333444443323444443 566666
Q ss_pred Hhhc--CCChHHHHHHHHHHHHHHh------hcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch-hHH
Q 001307 384 AYLA--APEWQKHHAALIALAQIAE------GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQ 454 (1103)
Q Consensus 384 ~~l~--~~~~~~r~aal~~l~~l~~------~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-~~~ 454 (1103)
+.+. +.++..+.-+++.++.+.. ..++.+-+.+...+.-.+..+...+|....+|..++|.+...... +..
T Consensus 262 nIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadll 341 (524)
T KOG4413|consen 262 NIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLL 341 (524)
T ss_pred HHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHH
Confidence 6665 3456666656666665432 233334444555566666777778888999999999999876532 221
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc--ccccC--c--------hHH--------HHHHHHHHhhc
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTP--Y--------LDG--------IVSKLLVLLQN 514 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~--~--------l~~--------ll~~L~~~l~~ 514 (1103)
...-+.-...++....|.+...-+..++.+|..+...... +.+.. - ++. =+..++..++.
T Consensus 342 lkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ 421 (524)
T KOG4413|consen 342 LKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ 421 (524)
T ss_pred hccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC
Confidence 2223334444444433312333457777777777654321 11111 0 110 02334445566
Q ss_pred CChhHHHHHHHHHHHHHH
Q 001307 515 GKQMVQEGALTALASVAD 532 (1103)
Q Consensus 515 ~~~~v~~~al~al~~l~~ 532 (1103)
+.+.++..++..+..++.
T Consensus 422 pfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 422 PFPEIHCAALKTFTAIAA 439 (524)
T ss_pred CChhhHHHHHHHHHHHHc
Confidence 678888888888888764
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.012 Score=65.52 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=170.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchh
Q 001307 232 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM 311 (1103)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 311 (1103)
..+-+.....+.++.+|..|++.+..+.+. ..+.. .+.......+ .|.++++|..|++.+..... ..|.-
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~---~~Y~~A~~~l--sD~~e~VR~aAvqlv~v~gn---~~p~~ 268 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSK---ACYSRAVKHL--SDDYEDVRKAAVQLVSVWGN---RCPAP 268 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccH---HHHHHHHHHh--cchHHHHHHHHHHHHHHHHh---cCCCc
Confidence 333355566788999999999999988872 22221 2233333333 45678999999888776665 33211
Q ss_pred h-hc--chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcC
Q 001307 312 M-RK--LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA 388 (1103)
Q Consensus 312 ~-~~--~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~ 388 (1103)
. +. -.......+..+...+.+. ++..+-.|.+.++.+-..- +.+ +.+.+.+-+-+
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~-----------------sl~VRV~AaK~lG~~~~vS--ee~---i~QTLdKKlms 326 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDR-----------------SLSVRVEAAKALGEFEQVS--EEI---IQQTLDKKLMS 326 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcC-----------------ceeeeehHHHHhchHHHhH--HHH---HHHHHHHHHhh
Confidence 1 11 1123444555555544433 2233434555555443221 111 22222221111
Q ss_pred C--ChHH---HHHHHHHHHHHH-------hhcHHHHHHhHHHH-----HHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 389 P--EWQK---HHAALIALAQIA-------EGCAKVMVKNLEQV-----LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 389 ~--~~~~---r~aal~~l~~l~-------~~~~~~~~~~l~~i-----~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
. -|+. |-..+..=|..+ ....+.....-..| +..++.++.|+--.||.+|...++.++..-+
T Consensus 327 ~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP- 405 (823)
T KOG2259|consen 327 RLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP- 405 (823)
T ss_pred hhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-
Confidence 1 1211 111121111111 11111111111223 3567888999999999999999999986432
Q ss_pred hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001307 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1103)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~ 531 (1103)
.+....+..|+..++| ....||..|+.+|..+..+.. .-.+.++.++..+.+.++.+|+.....++..-
T Consensus 406 ----~FA~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 406 ----GFAVRALDFLVDMFND-EIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred ----CcHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4567788889999999 888999999999999987743 23455677778888899999998877766542
Q ss_pred HhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhC
Q 001307 532 DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 532 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1103)
-... ..++.++..+...+.....+ |-..+.|++.|++.-+
T Consensus 475 ~~d~----~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 475 VSDL----ECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred CCcH----HHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 2211 23445555566666553222 3346789988876544
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.024 Score=63.12 Aligned_cols=292 Identities=17% Similarity=0.206 Sum_probs=173.7
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001307 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1103)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1103)
+...+.....+. +..||..|++++..+-+.+. +-..+.+...+.+.+.++++|.+|++.+.-....+|.
T Consensus 199 ~~~~l~~~~~~~-D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 199 AARGLIYLEHDQ-DFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHHHHHHhcCC-CcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 344466666675 89999999999887766331 1113455566677788899999999988877776631
Q ss_pred HH------HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcC-----
Q 001307 265 FL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLD----- 332 (1103)
Q Consensus 265 ~~------~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~----- 332 (1103)
.. ....+..+..+...+. |.+-.+|..|...++.+-... ..++.+.+.- ++..+..
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRkr~ah 335 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRKRTAH 335 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhhhhcc
Confidence 11 2234445554444443 456678888887777664421 1233332221 1111100
Q ss_pred -----CCCCcccccCCC-------CCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHH
Q 001307 333 -----IEDDPLWHSAET-------EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1103)
Q Consensus 333 -----~~~~~~w~~~~~-------e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 400 (1103)
.....+|....+ |++|+++.+.-..+ + .| .+...+.+.-..+|.||...
T Consensus 336 krpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sG--A-------CG----------A~VhGlEDEf~EVR~AAV~S 396 (823)
T KOG2259|consen 336 KRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSG--A-------CG----------ALVHGLEDEFYEVRRAAVAS 396 (823)
T ss_pred cchHHHHhcCCcccCccccccCchhhcccccccccccc--c-------cc----------eeeeechHHHHHHHHHHHHH
Confidence 011234443221 11111111110000 0 11 11122333446899999999
Q ss_pred HHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHH
Q 001307 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1103)
Q Consensus 401 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1103)
++.++-..+. .-..-+..+...++|+-..||..|..+|..++.++. .-++.++.++..|.| .++.+|.+
T Consensus 397 l~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D-~s~dvRe~ 465 (823)
T KOG2259|consen 397 LCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLED-RSVDVREA 465 (823)
T ss_pred HHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHh-cCHHHHHH
Confidence 9999887664 334566777788999999999999999999988742 334667777888888 88888876
Q ss_pred HHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 481 a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
.-..|.. +.-.. ..-+...+..+++.+..- |.-|...+.|++.++..-+
T Consensus 466 l~elL~~----~~~~d-~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 466 LRELLKN----ARVSD-LECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred HHHHHHh----cCCCc-HHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccCh
Confidence 6655543 33221 244566677777766532 3446788899998886544
No 100
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=97.98 E-value=6.1e-05 Score=71.92 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh----------------hchhh
Q 001307 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----------------TLTPH 181 (1103)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~----------------~l~~~ 181 (1103)
+.||+++|.+++.++.+++| ..||++++.+.+.+++ ++......+.+|..+.+++.+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999 7899999999999988 577788999999999988653 12335
Q ss_pred HHHHHHHHHHhhCCCCC---hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNN---PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l 255 (1103)
.+.++..+.+.+....+ ..+...+++++.+++.+++ ...+.. ..+++.+...++ ++..+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~----~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP----IELIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-----HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC----HHHhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 66777888777776522 7888999999999998763 221111 125556666664 444577777765
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.95 E-value=1.3e-05 Score=60.73 Aligned_cols=55 Identities=40% Similarity=0.530 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHH
Q 001307 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1103)
Q Consensus 432 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1103)
|.||..|+++||.++...++.. .++.+.++|.|...|+| +++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 6799999999999988877776 78999999999999999 8889999999999764
No 102
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.95 E-value=0.08 Score=61.68 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhh-hchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----
Q 001307 857 FDQVGEILGTLIKTFK-AAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE----- 930 (1103)
Q Consensus 857 ~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~----- 930 (1103)
+......+..+.++.| +...|.+..++|.+++.+ +-.+..+|..++.++..++.-.++....|+++++|.++.
T Consensus 884 K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 884 KHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred hhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 3345555566666666 345688999999999988 456778899999999999999898888899999999987
Q ss_pred ---------HHHHHHHHHHhhcC-CCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHH
Q 001307 931 ---------AAVYGLGVCAEFGG-SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 984 (1103)
Q Consensus 931 ---------~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~ 984 (1103)
.|..|++.+.+.-+ ....+|-+.++++|.+.+.++ .+-+|.-|+.|=+
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk------KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK------KRLVRKEAVDTRQ 1020 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH------HHHHHHHHHHHhh
Confidence 68889999998554 568899999999999999876 5778888877633
No 103
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.95 E-value=0.00098 Score=70.90 Aligned_cols=200 Identities=13% Similarity=0.185 Sum_probs=140.1
Q ss_pred HHHHHhhcCCChHHHHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001307 380 EQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1103)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (1103)
..+.+.-.+..-..|..|+. ..+-+.++.-..-.+|+.+|+-.++..+.| .+..+|..|+..|+.+++.-+..+ ..+
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l-~Ds 368 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL-FDS 368 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-hch
Confidence 33333333445667777776 445556665555568999999999999999 788999999999999998876665 677
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHH-HHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAAS-AVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~-al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
.+..+..++..-.| ..+.|...|.. ++..+....+... +..+.+ ++.+.+...-..++.++..+......
T Consensus 369 tE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~----I~~i~~----~Ilt~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 369 TEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC----IVNISP----LILTADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred HHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH----HHHHhh----HHhcCcchHHHHHHHHHHHHHhhcCH
Confidence 77888888888777 55655544444 4444444444322 222222 33334444445667778888776654
Q ss_pred -hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHH
Q 001307 537 -HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 593 (1103)
Q Consensus 537 -~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~ 593 (1103)
.+.+.++.++|.+++...+ ....+|..|+-|+-.+...+|.+.|.||+.++-.
T Consensus 440 EeL~~ll~diaP~~iqay~S----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDS----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcC----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 5678889999999988754 3346899999999999999998889999887643
No 104
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.94 E-value=2e-05 Score=72.08 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=87.8
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
+++.+...+.++++.+|..++++|+.++...+... ..+.. .++|.+++.+++ ++++++..++++|.+++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 56777788889999999999999999997643333 33344 899999999999 8999999999999999887542211
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001307 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1103)
Q Consensus 498 ~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~ 531 (1103)
...-..+++.+.+.+++.+..+++.++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122346888888899889999999999998875
No 105
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.02 Score=65.66 Aligned_cols=374 Identities=17% Similarity=0.238 Sum_probs=201.7
Q ss_pred HHHHHHhhcCC-CHhHHHHHHHHHHHhhhhh----hhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 145 LPFMFQCVSSD-SVKLQESAFLIFAQLSQYI----GDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 145 l~~l~~~~~s~-~~~~r~~al~~l~~l~~~~----~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
+..|++.++.. ++.. .+..+..+|+-+ .+.+.- -++.++|.+...|++..+.++...|++|+..+++.++.
T Consensus 169 ~kkLL~gL~~~~Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 44455555544 4432 344444444432 122221 37889999999999988899999999999999998754
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH--hHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 001307 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHLAIE 296 (1103)
Q Consensus 219 ~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~r~~a~~ 296 (1103)
....-.-...||.+++.|.. -+--++..+++++|-.|...+++.+-. .+...+.++ .++ .-.++..|+.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~---IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFF-----Si~aQR~Ala 316 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLT---IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFF-----SIHAQRVALA 316 (1051)
T ss_pred hhheeecccchHHHHHhhhh---hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHH-----HHHHHHHHHH
Confidence 21111111357777766654 235578889999999999888876533 122222221 221 2345666777
Q ss_pred HHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-Ccc-
Q 001307 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-NTI- 374 (1103)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~-~~~- 374 (1103)
....+|+. .+ ..-..++-..+|.|...+.+.++. ......-|+.+++..+.. ...
T Consensus 317 iaaN~Cks---i~---sd~f~~v~ealPlL~~lLs~~D~k-----------------~ies~~ic~~ri~d~f~h~~~kL 373 (1051)
T KOG0168|consen 317 IAANCCKS---IR---SDEFHFVMEALPLLTPLLSYQDKK-----------------PIESVCICLTRIADGFQHGPDKL 373 (1051)
T ss_pred HHHHHHhc---CC---CccchHHHHHHHHHHHHHhhccch-----------------hHHHHHHHHHHHHHhcccChHHH
Confidence 77777773 22 123468888899988888765322 122333455555544321 111
Q ss_pred ----hHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHhhcHHHHHHhH----HHHHHHHHhcCC-CCC-----hhHH-
Q 001307 375 ----VPVASEQLPAYLAAP----EWQKHHAALIALAQIAEGCAKVMVKNL----EQVLSMVLNSFR-DPH-----PRVR- 435 (1103)
Q Consensus 375 ----~~~l~~~l~~~l~~~----~~~~r~aal~~l~~l~~~~~~~~~~~l----~~i~~~l~~~l~-d~~-----~~vr- 435 (1103)
.+-++..+.+++.-. +-....+-+..+..++.+++..+...+ ...+..++.+-. ..+ +..|
T Consensus 374 dql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~ 453 (1051)
T KOG0168|consen 374 DQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRS 453 (1051)
T ss_pred HHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccC
Confidence 112333333333211 122333444555555555553222111 111111111100 000 0000
Q ss_pred -HHHH---------------------------------------------------HHHHHhhh----h-----------
Q 001307 436 -WAAI---------------------------------------------------NAIGQLST----D----------- 448 (1103)
Q Consensus 436 -~~a~---------------------------------------------------~~L~~l~~----~----------- 448 (1103)
..-+ .+..++.+ .
T Consensus 454 Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl 533 (1051)
T KOG0168|consen 454 PNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKL 533 (1051)
T ss_pred cHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhc
Confidence 0000 00111111 0
Q ss_pred ----------hchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchH--HHHHHHHHHhhcCC
Q 001307 449 ----------LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGK 516 (1103)
Q Consensus 449 ----------~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~--~ll~~L~~~l~~~~ 516 (1103)
-+|+....+...++|.|++..++.-++.||..+..+|..++-....+.+...+. .+-..+-..+.+.+
T Consensus 534 ~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD 613 (1051)
T KOG0168|consen 534 NGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKD 613 (1051)
T ss_pred CCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCC
Confidence 012333567888999999988875689999999999999886665443322221 12233344555566
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHH
Q 001307 517 QMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAIL 553 (1103)
Q Consensus 517 ~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l 553 (1103)
..+.-.|+.....+.+..++.|.+++ +.++-.+.++.
T Consensus 614 ~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~ 652 (1051)
T KOG0168|consen 614 LTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLS 652 (1051)
T ss_pred CeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHh
Confidence 66666777777777777777777766 33555555443
No 106
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.069 Score=59.60 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 21 ~~~l~~ll~~~~-s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
..+|+.+-..++ +.|...|-+||..|.++.+ .|+ ++...--++..+..|.-..+|+.+|-+.+..+ ..++-+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 356777777776 5689999999999999998 676 56666667777888999999999999999885 468999
Q ss_pred HHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHhcccCCC-----CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 100 TQSSLKSMLLQSIQLE---SAKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e---~~~~vr~~~~~~i~~ia~~~~~~~-----~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
++-.|++-+++.+... -.+-|-..+++.++.+-+..+-.. .+-+.+..+...++.++.+....|+.++..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999999999872 134577888888888877544321 23455666666666666666677777777766
Q ss_pred hhh
Q 001307 172 QYI 174 (1103)
Q Consensus 172 ~~~ 174 (1103)
.++
T Consensus 157 qem 159 (1082)
T KOG1410|consen 157 QEM 159 (1082)
T ss_pred HHh
Confidence 543
No 107
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0085 Score=64.52 Aligned_cols=279 Identities=18% Similarity=0.195 Sum_probs=158.4
Q ss_pred HHHHHHhcccCCCCc--c---hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHH
Q 001307 127 TVSELASNILPENGW--P---ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDV 201 (1103)
Q Consensus 127 ~i~~ia~~~~~~~~w--~---~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~v 201 (1103)
-++.+++...+..-| + +++..+.+-..+++...|..|+..|+..+...++....|...++..+..+|-|+.+.+|
T Consensus 237 d~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 237 DIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHH
Confidence 344444444443333 2 33334444456778899999999999999998888888999999999999988878899
Q ss_pred HHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch----HHHHHhHH-HHHHH
Q 001307 202 KIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP----RFLRRQLV-DVVGS 276 (1103)
Q Consensus 202 r~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~~-~l~~~ 276 (1103)
...++++|..+.+...+. +.. .-+++ +--.+.....+.+++.|..++..++.++...+ .+|...+. .+.++
T Consensus 317 ~leam~~Lt~v~~~~~~~-~l~--~~~l~-ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASND-DLE--SYLLN-IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred HHHHHHHHHHHHHhhhhc-chh--hhchh-HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccc
Confidence 999999999888765321 111 11122 22234455667889999999988888876442 33433332 34444
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchh
Q 001307 277 MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (1103)
Q Consensus 277 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~ 356 (1103)
++.+ . +..+.+. .|+......+- |...++ .+..+++..++ . + ..
T Consensus 393 llhl-~--d~~p~va-~ACr~~~~~c~-----p~l~rk---e~~~~~q~~ld----~-----------------~-~~-- 436 (533)
T KOG2032|consen 393 LLHL-Q--DPNPYVA-RACRSELRTCY-----PNLVRK---ELYHLFQESLD----T-----------------D-MA-- 436 (533)
T ss_pred eeee-C--CCChHHH-HHHHHHHHhcC-----chhHHH---HHHHHHhhhhH----H-----------------h-HH--
Confidence 4433 2 2233332 34444443332 322221 11112221110 0 0 00
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHH---hhcCCCh-HHHHHHHHHHHHHHhhcHHHHHHh--HHHHHHHHHhcCCCC
Q 001307 357 VGQECLDRLAIALGGNTIVPVASEQLPA---YLAAPEW-QKHHAALIALAQIAEGCAKVMVKN--LEQVLSMVLNSFRDP 430 (1103)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~~~~~-~~r~aal~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~d~ 430 (1103)
.........+..+ ..+.|.++-++.. .+-+..| .+|.++...-+...........++ ..++...+.....|+
T Consensus 437 ~~q~Fyn~~c~~L--~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp 514 (533)
T KOG2032|consen 437 RFQAFYNQWCIQL--NHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDP 514 (533)
T ss_pred HHHHHHHHHHHHH--hhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCC
Confidence 0111111111111 1222323222221 2224568 788877776666665544433333 335667777788999
Q ss_pred ChhHHHHHHHHHHHhhh
Q 001307 431 HPRVRWAAINAIGQLST 447 (1103)
Q Consensus 431 ~~~vr~~a~~~L~~l~~ 447 (1103)
-|.++..|..+++.+..
T Consensus 515 ~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 515 RPEVTDSARKALDLLSV 531 (533)
T ss_pred CchhHHHHHHHhhhHhh
Confidence 99999999999988753
No 108
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.1 Score=61.10 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCccccCCHHH
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1103)
-+..++.++.+-|.+.++--.-+|..+.+.+|+..+...-.+..+ ++++.+|.+|.-.+..+ +. ++.
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~----------~el 124 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-RV----------KEL 124 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-Ch----------HHH
Confidence 366778888888999999999999999988897765555555544 88999999998777542 11 344
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcch--hHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q 001307 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE--LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1103)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~--ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 173 (1103)
...+-..+.+.+.+ +.+.||+.++.++..+.+.. .+-.++ +...+..+..++++.+...|+..+..+...
T Consensus 125 ~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 LGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 55566667777776 79999999999999998743 233343 455666777889999999999999888776
No 109
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.088 Score=60.25 Aligned_cols=289 Identities=18% Similarity=0.199 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1103)
...+++++...+.+. ..-|...|.+++..+-.... ..+.| .+..++..+.++....|..++.+|.+++..
T Consensus 243 ~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~~--------r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTNS--------RELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred hhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccCH--------hhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 445667777777775 66677777776665544321 12222 566677777788888899999999999888
Q ss_pred chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc
Q 001307 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1103)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~ 341 (1103)
+|.....--.++=+. . .+.+..+ |.-.+.++.+. . ...-+.+++..+-..+.+..|+
T Consensus 313 ~P~~v~~cN~elE~l----I--td~NrsI---at~AITtLLKT---G------~e~sv~rLm~qI~~fv~disDe----- 369 (865)
T KOG1078|consen 313 HPQAVTVCNLDLESL----I--TDSNRSI---ATLAITTLLKT---G------TESSVDRLMKQISSFVSDISDE----- 369 (865)
T ss_pred CCccccccchhHHhh----h--cccccch---hHHHHHHHHHh---c------chhHHHHHHHHHHHHHHhcccc-----
Confidence 775543211111111 1 1223333 33334444442 0 1123344555555555554322
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001307 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1103)
Q Consensus 342 ~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1103)
...+..+++..++..++.++ ..+++++...+. ++....+.+...++..+++..++.=..-+..++
T Consensus 370 ------------FKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LC 435 (865)
T KOG1078|consen 370 ------------FKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLC 435 (865)
T ss_pred ------------ceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 12345677778887776332 235566666665 455788889999998888876654444555555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q 001307 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1103)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1103)
..+..+- -+..+...|+.+....+.... ..|...+...+. - .+..||.+|..++..|. .+...+
T Consensus 436 efIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi----L-En~ivRaaAv~alaKfg--~~~~~l-- 500 (865)
T KOG1078|consen 436 EFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI----L-ENAIVRAAAVSALAKFG--AQDVVL-- 500 (865)
T ss_pred HHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh----h-hhhhhHHHHHHHHHHHh--cCCCCc--
Confidence 5554432 344555666666655543210 234444444332 2 46789999999999998 222222
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
.+.+...+..++.+.+..+|+.|-..+..+-..
T Consensus 501 -~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 501 -LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred -cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 345555666778889999999988777776633
No 110
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0056 Score=68.95 Aligned_cols=170 Identities=12% Similarity=0.258 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001307 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1103)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1103)
+..-.+.-|.++...+...+..++-+ ++.+++. .+-++|..++.+...++.. + -++.++..+
T Consensus 296 vklIvldrl~~l~~~~~~il~~l~mD----vLrvLss--~dldvr~Ktldi~ldLvss--------r----Nvediv~~L 357 (948)
T KOG1058|consen 296 VKLIVLDRLSELKALHEKILQGLIMD----VLRVLSS--PDLDVRSKTLDIALDLVSS--------R----NVEDIVQFL 357 (948)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHH----HHHHcCc--ccccHHHHHHHHHHhhhhh--------c----cHHHHHHHH
Confidence 33334444444443333333333333 3444433 4678999999998888873 2 234455554
Q ss_pred HHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q 001307 327 MSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1103)
Q Consensus 327 ~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1103)
-.-+.+..+. |.+ +...-+....+.+...+..++ .+...+++.+.+++.+.+...-...+..+....+
T Consensus 358 kke~~kT~~~--------e~d--~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~ie 425 (948)
T KOG1058|consen 358 KKEVMKTHNE--------ESD--DNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIE 425 (948)
T ss_pred HHHHHhcccc--------ccc--cchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4433332111 011 111223445667777776675 6677788888899998888877777777777777
Q ss_pred hcHHHHHHhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhhhhhc
Q 001307 407 GCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 407 ~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
..+..-. .++..++..+.. .++.+-..|+|.+|.+|+...
T Consensus 426 k~p~Lr~----~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 426 KFPNLRA----SIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hCchHHH----HHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 6654222 233333333321 345677899999999998754
No 111
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.86 E-value=0.00042 Score=73.56 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=128.0
Q ss_pred hHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHH-HHhhhhhchh
Q 001307 375 VPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAI-GQLSTDLGPD 452 (1103)
Q Consensus 375 ~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L-~~l~~~~~~~ 452 (1103)
+..++-.+.+.+.+ .+...|.-|+..|..+....+..+..+..-.+..++..-.|+++.|-..|..++ ..++.+.+
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P-- 404 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP-- 404 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc--
Confidence 34455555556655 678899999999999999988877777777777778888888887666665554 44444443
Q ss_pred HHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
..-+..+.|.++. .| ...-..++..+..+++.+..+.+.+.++.++|.+++..++.+..||+.++.|+-.+..
T Consensus 405 --~~~I~~i~~~Ilt--~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 405 --LQCIVNISPLILT--AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred --hhHHHHHhhHHhc--Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 2334556666655 22 2334567778999999999888999999999999999999999999999999999999
Q ss_pred hhh-hhhHhhHhhhhHHHHHHH
Q 001307 533 SSQ-EHFQKYYDAVMPFLKAIL 553 (1103)
Q Consensus 533 ~~~-~~~~~~~~~i~~~l~~~l 553 (1103)
..| +.+.||+.++-..-..++
T Consensus 478 ~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 478 RVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHhHHhhhhHhhhccHHHHHHH
Confidence 999 789999987654444433
No 112
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.15 Score=61.22 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=106.9
Q ss_pred CcchhHHHHHHhhcCCCHhH-HHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 140 GWPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~-r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
+.+.++..+++-+.+..+.. ..++...++.+.....+.+...+-.-+..|...+... +...|.+.+.++++++...-.
T Consensus 267 ~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~ 345 (1251)
T KOG0414|consen 267 GSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELR 345 (1251)
T ss_pred ccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhc
Confidence 45788888888887765544 3444555555555544443333444455566666665 899999999999998876432
Q ss_pred cch-HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 001307 219 SAD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEF 297 (1103)
Q Consensus 219 ~~~-~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~ 297 (1103)
... ......+-..+++.+.+.+.+-++-+|..++..|..++..+....+. ..+++......+. |-+.-||..|+..
T Consensus 346 d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~-~~eV~~la~grl~--DkSslVRk~Ai~L 422 (1251)
T KOG0414|consen 346 DEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGS-RTEVLELAIGRLE--DKSSLVRKNAIQL 422 (1251)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccH-HHHHHHHHhcccc--cccHHHHHHHHHH
Confidence 222 23334444458899998888889999999999999999866433322 3445554444442 3356789999999
Q ss_pred HHHHHH
Q 001307 298 VITLAE 303 (1103)
Q Consensus 298 l~~l~~ 303 (1103)
+..+..
T Consensus 423 l~~~L~ 428 (1251)
T KOG0414|consen 423 LSSLLD 428 (1251)
T ss_pred HHHHHh
Confidence 998887
No 113
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.78 E-value=0.0007 Score=66.25 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001307 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1103)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1103)
++..|..++.++|.++.-.+. .+++.++.+...|+|++|.||..|+.+|..+...- + .+.-+.++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---M-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---c-eeehhhhhHHHHHHH
Confidence 467888999999988876654 45566777778999999999999999999987532 2 345667778888889
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHH
Q 001307 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1103)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~ 509 (1103)
.| +++.||..|..++..+.....++.+..++++++..+-
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99 9999999999999999888655555455555544443
No 114
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.77 E-value=0.037 Score=71.82 Aligned_cols=356 Identities=14% Similarity=0.136 Sum_probs=208.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhcccCC--CCcch----hHHHHHHhhcCCCHhHHHHHHH
Q 001307 94 PRLSLHTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPE--NGWPE----LLPFMFQCVSSDSVKLQESAFL 165 (1103)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~e--~~~~vr~~~~~~i~~ia~~~~~~--~~w~~----ll~~l~~~~~s~~~~~r~~al~ 165 (1103)
..++.+....+...|.+.=..| ....-|.-.-+-+..++.+...+ -.|+. +-+++.....+++...+..|+.
T Consensus 1080 ~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAid 1159 (1780)
T PLN03076 1080 QKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMD 1159 (1780)
T ss_pred ccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 4566665555544555432111 00111222233334444433221 25655 4555555555666677778888
Q ss_pred HHHHhhhhhhh--hchh--hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHh
Q 001307 166 IFAQLSQYIGD--TLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN 241 (1103)
Q Consensus 166 ~l~~l~~~~~~--~l~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~ 241 (1103)
.|..++..+-+ ++.. .-..++..|...+....+.++|...++|+..++... ...+..-|..++.++.....
T Consensus 1160 sLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~-----~~nIkSGWktIF~VLs~aa~ 1234 (1780)
T PLN03076 1160 SLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR-----VNNVKSGWKSMFMVFTTAAY 1234 (1780)
T ss_pred HHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-----HhhhhcCcHHHHHHHHHHHh
Confidence 88887765432 1211 234677777776766558899999999999998764 23455567788888888777
Q ss_pred CCCHHHHHHHHHHHHHHHccchHHHH----HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhh-----
Q 001307 242 NGNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM----- 312 (1103)
Q Consensus 242 ~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~----- 312 (1103)
+..+.....+++++..++..+-..+. ..+.+++..+..+..+. .+.++...|++++..++..--..+...
T Consensus 1235 d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~ 1313 (1780)
T PLN03076 1235 DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGDLGSSSRNK 1313 (1780)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhcccccccccc
Confidence 77888889999999888765433222 46667787777777543 346677778877765543200000000
Q ss_pred ----------------------hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC
Q 001307 313 ----------------------RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1103)
Q Consensus 313 ----------------------~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1103)
.....+..-.+|.+...-.-..+ +....++-|.+.|-++....|
T Consensus 1314 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D--------------~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1314 DKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFD--------------PRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcC--------------CcHHHHHHHHHHHHHHHHHhh
Confidence 00001111223332222110000 012245556666555555555
Q ss_pred CCcchH---------HHHHHHHHhh---c---------------C-----CChHHHHHHHHHHHHHHhhcHH---HHHHh
Q 001307 371 GNTIVP---------VASEQLPAYL---A---------------A-----PEWQKHHAALIALAQIAEGCAK---VMVKN 415 (1103)
Q Consensus 371 ~~~~~~---------~l~~~l~~~l---~---------------~-----~~~~~r~aal~~l~~l~~~~~~---~~~~~ 415 (1103)
..+-+ .++|.+...- . + ..|. .+....+|..+++-... .+...
T Consensus 1380 -~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~ 1457 (1780)
T PLN03076 1380 -HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPL 1457 (1780)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23222 3444443311 0 0 1143 45666666666665554 44567
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001307 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1103)
++.++..+..++..+|..+-..+..||.++....+..+.+..+..++..+.+.+..
T Consensus 1458 L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1458 LKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999999999888888777888888888777765
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.76 E-value=0.043 Score=64.71 Aligned_cols=340 Identities=16% Similarity=0.171 Sum_probs=186.1
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC--CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhh
Q 001307 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH 181 (1103)
Q Consensus 104 ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~ 181 (1103)
+...|+..|.+ .+..+.-.+...+.++.-..-... .-..+++.|..++.+++...+..++.+|..++..- ..+..
T Consensus 291 iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~ 367 (708)
T PF05804_consen 291 IVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELRSQ 367 (708)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHHHH
Confidence 33456667766 466777666667766643211001 11467899999999999999999999999887542 22222
Q ss_pred H--HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001307 182 L--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1103)
Q Consensus 182 ~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1103)
+ ..++|.+...+.++ ..+..++..|..+...- .....-.+.+.+|.+++.+.. .+++.+....+..+..++
T Consensus 368 mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~---~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP---NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLE---NSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHh---CCCccccHHHHHHHHHHh
Confidence 2 23666777777765 45566777777665421 111122334667777776654 344444445555555555
Q ss_pred ccc--hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001307 260 GTE--PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1103)
Q Consensus 260 ~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1103)
... .+.+.. ...++.++..+-.. .+ ...+.++..++.+ .+.....+.+|+..++.. +...+
T Consensus 441 ~~~rnaqlm~~--g~gL~~L~~ra~~~--~D---~lLlKlIRNiS~h---~~~~k~~f~~~i~~L~~~----v~~~~--- 503 (708)
T PF05804_consen 441 LNKRNAQLMCE--GNGLQSLMKRALKT--RD---PLLLKLIRNISQH---DGPLKELFVDFIGDLAKI----VSSGD--- 503 (708)
T ss_pred cCHHHHHHHHh--cCcHHHHHHHHHhc--cc---HHHHHHHHHHHhc---CchHHHHHHHHHHHHHHH----hhcCC---
Confidence 432 122211 12233333322111 11 1234566667664 222222233444444333 22211
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC----cch--HHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcH
Q 001307 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN----TIV--PVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCA 409 (1103)
Q Consensus 338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~----~~~--~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~ 409 (1103)
......+|++.|++.--++ .++ ..++|++...+..+ +....-.++..+|.++..
T Consensus 504 ----------------~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-- 565 (708)
T PF05804_consen 504 ----------------SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-- 565 (708)
T ss_pred ----------------cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--
Confidence 1126678888888753211 122 13667777777533 234555567777877643
Q ss_pred HHHHHhH--HHHHHHHHhcCCC--CChhHHHHHHHHHHHhhhhhchhHHhh--hhhhhHHHHHhhccCCCCcchHHHHHH
Q 001307 410 KVMVKNL--EQVLSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPDLQNQ--FHPQVLPALAGAMDDFQNPRVQAHAAS 483 (1103)
Q Consensus 410 ~~~~~~l--~~i~~~l~~~l~d--~~~~vr~~a~~~L~~l~~~~~~~~~~~--~~~~il~~l~~~l~~~~~~~v~~~a~~ 483 (1103)
+.....+ ..+++.+...++. .+..+.-..++++.++..+-. .... ....+...++..++| +++.+|..|-.
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~--tr~~ll~~~~~~~ylidL~~d-~N~~ir~~~d~ 642 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE--TREVLLKETEIPAYLIDLMHD-KNAEIRKVCDN 642 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH--HHHHHHhccchHHHHHHHhcC-CCHHHHHHHHH
Confidence 1222222 2455555555543 244555566777878775521 1111 225678889999999 99999988888
Q ss_pred HHHHHHhc
Q 001307 484 AVLNFSEN 491 (1103)
Q Consensus 484 al~~l~~~ 491 (1103)
+|.-+++.
T Consensus 643 ~Ldii~e~ 650 (708)
T PF05804_consen 643 ALDIIAEY 650 (708)
T ss_pred HHHHHHHh
Confidence 88777654
No 116
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0028 Score=72.52 Aligned_cols=234 Identities=15% Similarity=0.185 Sum_probs=166.3
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhh
Q 001307 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1103)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~ 541 (1103)
+...+..+.| +.+.+|..+...+..+++.-.+.. .-....++...+..+.+.++.+--.++..+.+++...++
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 4455566677 777889999999999998664432 245667888889999999999988999999999887554
Q ss_pred HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH
Q 001307 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1103)
Q Consensus 542 ~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 621 (1103)
.++|-+.....+..+......|-+.-+++..++.+.| +.+..|...+++.++.... ++|...|...+..+|.+|
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 4666666644332322212334455699999999999 8888998888888887333 234557888888999999
Q ss_pred hHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHH
Q 001307 622 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 701 (1103)
Q Consensus 622 ~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~ 701 (1103)
....-....++..+...++.....+.. .-.|.+|+..+..+...
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s------------------------------------~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGS------------------------------------VLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCc------------------------------------hhhHHHHHHHHHHHHhc
Confidence 887766666777777777776643211 11267788899999999
Q ss_pred hhhhccccH----HHHHHHhcccccccCCHHHHHHHHHhHHHHHHHH
Q 001307 702 LKEGFFPWI----DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1103)
Q Consensus 702 ~~~~~~p~~----~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1103)
+|..+.|+. -+....+..++.....+.+|.-|..++-.+-..+
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 999998854 3444555555555556677877777776665554
No 117
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.74 E-value=0.039 Score=60.42 Aligned_cols=131 Identities=24% Similarity=0.237 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc---CCCCChhHHHHHHHHHHHhhhhhch------------hHHh
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP------------DLQN 455 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~---l~d~~~~vr~~a~~~L~~l~~~~~~------------~~~~ 455 (1103)
-..|.||...+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++..... .+..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 467889999999888776654444444444443331 1245789999999999999875521 1212
Q ss_pred hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001307 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1103)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al 527 (1103)
=+...++|.|. .-.+ ..|-++..|++.+..|-..++++ .+..+++.+...+.+++..|+..|..||
T Consensus 305 Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~~----~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPKE----QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-HH----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23556677776 2223 57889999999999998887754 6788899999999999988888877664
No 118
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.73 E-value=0.00069 Score=64.96 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=115.2
Q ss_pred HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
..++.++..+...++++++.-|..++..++..++..+.++...+....+..+++.++....+.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 46677888888999999999999999999999999866665677888999999998874556788999999999987653
Q ss_pred c------ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHH
Q 001307 494 P------EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1103)
Q Consensus 494 ~------~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1103)
. +...|.++.+++.+++++++ ....+.++.++..+....+..|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 44578999999999998886 5677899999999999999999999988877776654
No 119
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.013 Score=68.41 Aligned_cols=95 Identities=18% Similarity=0.122 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhh---cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEG---CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~---~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (1103)
.++.....++.+.+-..|-.++.++...... -.+.+-|.+.+.+|.++..+.+++|.+-..|+.|+.+++...++-+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 3445556677888899999988887654322 2245667788889999999999999999999999999999999888
Q ss_pred HhhhhhhhHHHHHhhccC
Q 001307 454 QNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 454 ~~~~~~~il~~l~~~l~~ 471 (1103)
.+.+...++|.+-..+.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999998766655
No 120
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.66 E-value=0.23 Score=58.08 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001307 183 KHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 183 ~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1103)
..++..+...++ ++ ...|+.+|++.+.+...+.+ ....+|..+-.|+..+.++-..+|..++..|.++...
T Consensus 575 ~~V~~mi~Rr~~~d~-k~~v~k~a~~~l~S~l~~cD-------~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDD-KAPVKKAACSLLKSYLSYCD-------EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHHhccCC-CcccchhhHHHHHHHHhccc-------hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 345556666666 54 77899999999998887653 1234555677777777788888999999999999877
Q ss_pred chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001307 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1103)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1103)
.|..+. .-...+..+..++. +.+..+...|+.++..+
T Consensus 647 ~pr~~~-~~~~wl~~li~~~~--d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 647 DPRLFS-LSSKWLHTLISMLN--DTESDVTEHARKLIMKV 683 (1529)
T ss_pred Cchhhh-hhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 665551 11122222223332 33456666666655544
No 121
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.63 E-value=0.25 Score=57.85 Aligned_cols=268 Identities=14% Similarity=0.159 Sum_probs=156.8
Q ss_pred CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc--hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh--
Q 001307 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL--TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-- 215 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l--~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-- 215 (1103)
..-+++..+-..+.++++..|..|+.++..+..+.+..+ +.++..++.+..+.+.|. .-+...++..+..+...
T Consensus 40 tl~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd~--~la~~~~l~~l~aL~~~~~ 117 (1030)
T KOG1967|consen 40 TLLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDDS--ALAKEAVLGGLKALILMSK 117 (1030)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHHh--hhhHHHHHHHHHHHHHhhc
Confidence 456777788888999999999999999999988877643 236778888888888874 44455555545554432
Q ss_pred cCCcchHhHHHhhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHccchHHHHHhHHHH-HHHHHHhhcCCCcchHHHH
Q 001307 216 LTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQLVDV-VGSMLQIAEAESLEEGTRH 292 (1103)
Q Consensus 216 ~~~~~~~~~~~~~ip~ll~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~r~ 292 (1103)
++. ..+-.+++.+++-.+-+ -...|...+++|..+...+-.++....+++ +..+++.++. +-|+.--.
T Consensus 118 ~p~--------~~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~G-EKDPRnLm 188 (1030)
T KOG1967|consen 118 LPD--------NFIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDG-EKDPRNLM 188 (1030)
T ss_pred CCc--------hHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcC-CCCchhhH
Confidence 221 12224455554433222 124677788888888887777666655544 4435565532 22343334
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCch--hhHHHHHHHHHHHcC
Q 001307 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY--SVGQECLDRLAIALG 370 (1103)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~--~~a~~~l~~l~~~~~ 370 (1103)
.++.....+... . -.+.+|.+.++..+.-+.--. +....+| ....+ .....+...++ .
T Consensus 189 l~F~l~~~i~s~--~-----~~l~~F~edlFeV~~CYFPI~-----Fkppk~D-----~~~I~reDL~~sLr~al~---s 248 (1030)
T KOG1967|consen 189 LVFSLVKEISSL--N-----FPLGPFTEDLFEVIACYFPIT-----FKPPKDD-----TITIRREDLKASLRSALV---S 248 (1030)
T ss_pred HHHHHHHHHhhc--c-----CCCCccHHHHHHHhheeeeee-----ccCCCCC-----cccccHHHHHHHHHHHHh---c
Confidence 455555555541 1 124567788887765543210 0000000 11111 12222222222 2
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCC-CChhHHHHH
Q 001307 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRD-PHPRVRWAA 438 (1103)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a 438 (1103)
.+.+.|.++|.+.+-+++..+..+.-++.++...+...+ +.+.++.+.++..|...+.. .+..++..+
T Consensus 249 tP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~s~se~~e~~~ 318 (1030)
T KOG1967|consen 249 TPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQSESETIENIG 318 (1030)
T ss_pred CccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcccccccccccc
Confidence 367888999999999999999988777777776655443 45666777777766654433 343444333
No 122
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.07 Score=57.19 Aligned_cols=213 Identities=14% Similarity=0.111 Sum_probs=117.1
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHH
Q 001307 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1103)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~ 510 (1103)
.+..+.++|.+++++...--..+ .+--....+.++.+-+|.++.-++.+|..++..++-+-+.....-+...-.+.+..
T Consensus 362 ~~Tl~~s~Cdals~i~~~~f~~l-pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~ 440 (728)
T KOG4535|consen 362 HPTLQASACDALSSILPEAFSNL-PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILM 440 (728)
T ss_pred CCCchhHHHHHHhhcCchhhcCC-CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHH
Confidence 45566677777777654321111 11122456666666666345567788888877765443332233455556666777
Q ss_pred HhhcCChhHHHHHHHHHHHHHHhhhhhhH---hhHhhhhHHHHHH-Hh--hcCCcccchhhhHHHHHHHHHHHhhChhhh
Q 001307 511 LLQNGKQMVQEGALTALASVADSSQEHFQ---KYYDAVMPFLKAI-LV--NATDKSNRMLRAKSMECISLVGMAVGKDKF 584 (1103)
Q Consensus 511 ~l~~~~~~v~~~al~al~~l~~~~~~~~~---~~~~~i~~~l~~~-l~--~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~ 584 (1103)
.+.+..-.+|..+..++|.+-.+.-..+. .+...+...+... +. +..+.+...+|..++++++.+...+. ...
T Consensus 441 sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq-~i~ 519 (728)
T KOG4535|consen 441 SLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ-PIE 519 (728)
T ss_pred HhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-Hhh
Confidence 77777778899999999998776543322 1333333333322 11 11233345689999999998876654 222
Q ss_pred hhhHHHHHHHHHH-HhcC-CCCCCCchhhHHHHHHHHHHhH--hcCCcccchhhhhHHHHHhccc
Q 001307 585 RDDAKQVMEVLMS-LQGS-QMETDDPTTSYMLQAWARLCKC--LGQDFLPYMSVVMPPLLQSAQL 645 (1103)
Q Consensus 585 ~~~~~~i~~~l~~-l~~~-~~~~~~~~~~~~~~~~~~l~~~--~~~~~~p~l~~i~~~ll~~~~~ 645 (1103)
.+-..++++.-.. +... ..+..-+++=-+..+++++.+. ++-.=.++.+.+.+.|+..+..
T Consensus 520 ~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 520 KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 2333344433222 1111 0111123444455566666654 2223357788888888877744
No 123
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.61 E-value=0.2 Score=56.49 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=104.7
Q ss_pred CChHHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHH
Q 001307 389 PEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALA 466 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~ 466 (1103)
.+-..+.||+.++-.++......-. ..-..++..+++.+.||...|..++.-+|..+...+++.- ..+ -...+..+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHHH
Confidence 4567788999888877665432111 1223567777788899999999999999999888776543 333 346788888
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCcccc-cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l-~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
+.+.+ +.+.+|..+.|+|..+.-++..... .++-.--...+..+.+++++.|+++++..+-.+.-.
T Consensus 468 s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 468 SMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 88888 8899999999999999877654322 233333345666677889999999999999887644
No 124
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.61 E-value=0.017 Score=67.96 Aligned_cols=375 Identities=15% Similarity=0.150 Sum_probs=197.9
Q ss_pred chhhHHHHHHHHHHHHHhcccCCC--CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhh
Q 001307 116 SAKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~--~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l 193 (1103)
.+..+| .....+..++...-... .-..+++.|..++.+++......++.+|..++-.....-.-.-..+++.+...+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344444 34455666665321100 125678889999998888888888888888875422211111234667777777
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH-HHHHhH
Q 001307 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR-FLRRQL 270 (1103)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~ 270 (1103)
..+ +..++..+++.|.++...- ..+..+ .+++|.++..+ .+ +..+..++.+|..+...... ....+
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~---~~R~~mV~~GlIPkLv~LL----~d--~~~~~val~iLy~LS~dd~~r~~f~~- 409 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDP---ELRSQMVSLGLIPKLVELL----KD--PNFREVALKILYNLSMDDEARSMFAY- 409 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCH---HHHHHHHHCCCcHHHHHHh----CC--CchHHHHHHHHHHhccCHhhHHHHhh-
Confidence 776 8889999999998886421 112212 23556555544 33 33445567777666543211 11111
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcccc
Q 001307 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (1103)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~ 350 (1103)
.+.++.+++.+... .++.+...++.++..++..++.+..+++. .-++.++.......|
T Consensus 410 TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~g------~gL~~L~~ra~~~~D--------------- 467 (708)
T PF05804_consen 410 TDCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCEG------NGLQSLMKRALKTRD--------------- 467 (708)
T ss_pred cchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHhc------CcHHHHHHHHHhccc---------------
Confidence 13445555443221 23444444555566666533222212211 122333322211110
Q ss_pred CCCchhhHHHHHHHHHHHcCCC--cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH--HHHHhHH--HHHHHHH
Q 001307 351 ESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLE--QVLSMVL 424 (1103)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~--~i~~~l~ 424 (1103)
....+++..++.+-|+. .+.+.+.+.+. .+.+.+ .-+..+.++|.++.-... .....+. .++|.+.
T Consensus 468 -----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~-~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 468 -----PLLLKLIRNISQHDGPLKELFVDFIGDLAK-IVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLK 539 (708)
T ss_pred -----HHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHH
Confidence 13345556666554321 12233333332 233332 224556666666554211 2223333 4667777
Q ss_pred hcCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CCcchHHHHHHHHHHHHhcCCcc-cccCc
Q 001307 425 NSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPE-ILTPY 500 (1103)
Q Consensus 425 ~~l~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~-~l~~~ 500 (1103)
..|... ++.+.-.+...+|.++..-.... .-.-..+++.++..++.. .+.+.....+.++..++.+-... .+. .
T Consensus 540 ~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll-~ 617 (708)
T PF05804_consen 540 DLLKPGASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLL-K 617 (708)
T ss_pred HHhCCCCCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHH-h
Confidence 666533 44577777888888875422111 112346777777777652 23455566777777777653221 111 1
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
-..+...++.++.+.+..+|..+=.++..++..-
T Consensus 618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 1346678888999999999988888887777653
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.099 Score=53.16 Aligned_cols=290 Identities=15% Similarity=0.194 Sum_probs=165.6
Q ss_pred HHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh-ch----hhHHHHHHHHHHhhCCCCChH
Q 001307 126 DTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT----PHLKHLHAVFLNCLTNSNNPD 200 (1103)
Q Consensus 126 ~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-l~----~~~~~l~~~l~~~l~~~~~~~ 200 (1103)
.++..+.+...+..--|+++|.+...+..++..++..++.-++.+.+..... +. -.-..+++.+..++... +.+
T Consensus 65 scLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-dde 143 (524)
T KOG4413|consen 65 SCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDE 143 (524)
T ss_pred HHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHH
Confidence 4555555554554566899999999999999999999999999998875421 11 12356888899999987 899
Q ss_pred HHHHHHHHHHHHHHhcCCcchHhHHHhhHHH-HHHH--HHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHh-HHHHHHH
Q 001307 201 VKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRT--LTESLNNGNEATAQEALELLIELAGTEPRFLRRQ-LVDVVGS 276 (1103)
Q Consensus 201 vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~-ll~~--l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~ 276 (1103)
|-.+|++.+.++..+- .....++|. +++- +......-+.-.|..+++.+.++....+...... -..++..
T Consensus 144 VAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 144 VAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred HHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 9999999998887541 111111110 0000 1111111244567778888888887766544322 1245555
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCc
Q 001307 277 MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1103)
Q Consensus 277 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~ 354 (1103)
+..-+.. ..+.-++..++++...+++.. ....|+ ..++..+...+...+.+ +
T Consensus 218 LeaElkG-teDtLVianciElvteLaete--------HgreflaQeglIdlicnIIsGadsd-----------------P 271 (524)
T KOG4413|consen 218 LEAELKG-TEDTLVIANCIELVTELAETE--------HGREFLAQEGLIDLICNIISGADSD-----------------P 271 (524)
T ss_pred HHHHhcC-CcceeehhhHHHHHHHHHHHh--------hhhhhcchhhHHHHHHHHhhCCCCC-----------------c
Confidence 5443322 134557888999999998742 112233 33566666655544322 2
Q ss_pred hhhHHHHHHHHHHHcCCC--------cc---hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH--HHHHhHHHHHH
Q 001307 355 YSVGQECLDRLAIALGGN--------TI---VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLS 421 (1103)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~--------~~---~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~ 421 (1103)
+.. ...+--+.+.+|.. .+ ++..+.-..+.+...++....+|+.++|.+...... .+.+.-+.-..
T Consensus 272 fek-fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaae 350 (524)
T KOG4413|consen 272 FEK-FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAE 350 (524)
T ss_pred HHH-HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHH
Confidence 211 11122222233321 11 122233334556678888999999999988655332 22222223334
Q ss_pred HHHhcCCCCChh-HHHHHHHHHHHhhhhh
Q 001307 422 MVLNSFRDPHPR-VRWAAINAIGQLSTDL 449 (1103)
Q Consensus 422 ~l~~~l~d~~~~-vr~~a~~~L~~l~~~~ 449 (1103)
.++....|.+.. -+.++.++|..++..+
T Consensus 351 hllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 351 HLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 444444444432 3567788888887654
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00034 Score=59.55 Aligned_cols=86 Identities=28% Similarity=0.401 Sum_probs=66.6
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001307 380 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1103)
Q Consensus 380 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (1103)
+.+.+.+ ++++|..|..++.+++.+. -++.++.+...++|+++.||..|+++||++..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 3445555 7889999999999998432 23678888888899999999999999998741
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHH
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1103)
+..++.+.+.+.+.++..||..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3577888888877355667999988874
No 127
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.26 Score=55.80 Aligned_cols=328 Identities=17% Similarity=0.240 Sum_probs=182.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001307 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1103)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~ 463 (1103)
+++++.....+..+++.++.+.+...+ .++-++..+.+-|.+.++.-..-|+.|++.+... ++.+.|..++-.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~K 153 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPK 153 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHH
Confidence 466777788888999999988876643 4556777777788888999999999999988753 232445555544
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYD 543 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~ 543 (1103)
.|...- ...-|+..|+-+|-.+.+..+ +.+. -+.-.+.+..++++.+-.|-..+...|..++..-++. +.
T Consensus 154 lLvS~~---~~~~vkqkaALclL~L~r~sp-Dl~~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~----yk 223 (938)
T KOG1077|consen 154 LLVSGS---SMDYVKQKAALCLLRLFRKSP-DLVN--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES----YK 223 (938)
T ss_pred HHhCCc---chHHHHHHHHHHHHHHHhcCc-cccC--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH----Hh
Confidence 444332 245788999999989888755 3222 2334566777888887767666766666666655543 33
Q ss_pred hhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChh------hhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHH
Q 001307 544 AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD------KFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQA 616 (1103)
Q Consensus 544 ~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~------~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~ 616 (1103)
..++.-.. -+..++.+.|.+ .|.| ++++.--+++ ++.-....|...+.....+
T Consensus 224 ~~~~~avs-------------------~L~riv~~~~t~~qdYTyy~vP-~PWL~vKl~rlLq~~p~~~D~~~r~~l~ev 283 (938)
T KOG1077|consen 224 TCLPLAVS-------------------RLSRIVVVVGTSLQDYTYYFVP-APWLQVKLLRLLQIYPTPEDPSTRARLNEV 283 (938)
T ss_pred hhHHHHHH-------------------HHHHHHhhcccchhhceeecCC-ChHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 33322222 222233333322 1111 2333222222 2222222333455555555
Q ss_pred HHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHH
Q 001307 617 WARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLC 696 (1103)
Q Consensus 617 ~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~ 696 (1103)
+.++... .+..|... +.. +... |.+-+.-.-
T Consensus 284 l~~iLnk-------------------~~~~~~~k----------------~vq-------~~na-------~naVLFeaI 314 (938)
T KOG1077|consen 284 LERILNK-------------------AQEPPKSK----------------KVQ-------HSNA-------KNAVLFEAI 314 (938)
T ss_pred HHHHHhc-------------------cccCcccc----------------chH-------hhhh-------HHHHHHHHH
Confidence 5544332 21111000 000 0000 111111112
Q ss_pred HHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001307 697 CYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEAL 776 (1103)
Q Consensus 697 ~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 776 (1103)
.++.++... -..+.+++..+..++.+ ...++|--|.+.++.|+.+-. ..+.++...+.| +..+
T Consensus 315 ~l~~h~D~e-~~ll~~~~~~Lg~fls~-rE~NiRYLaLEsm~~L~ss~~-----------s~davK~h~d~I----i~sL 377 (938)
T KOG1077|consen 315 SLAIHLDSE-PELLSRAVNQLGQFLSH-RETNIRYLALESMCKLASSEF-----------SIDAVKKHQDTI----INSL 377 (938)
T ss_pred HHHHHcCCc-HHHHHHHHHHHHHHhhc-ccccchhhhHHHHHHHHhccc-----------hHHHHHHHHHHH----HHHh
Confidence 222232211 01145566666666665 478899999999988876521 233455554444 4567
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 001307 777 HKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITA 821 (1103)
Q Consensus 777 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~ 821 (1103)
..|.|.+++.-+++-|..+.+. +....++.-+.+.|..
T Consensus 378 kterDvSirrravDLLY~mcD~-------~Nak~IV~elLqYL~t 415 (938)
T KOG1077|consen 378 KTERDVSIRRRAVDLLYAMCDV-------SNAKQIVAELLQYLET 415 (938)
T ss_pred ccccchHHHHHHHHHHHHHhch-------hhHHHHHHHHHHHHhh
Confidence 8899999998888877655332 4556666666665543
No 128
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.55 E-value=0.0021 Score=61.57 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=111.6
Q ss_pred CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh-hhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
.+..+...+.++++++++..|-.|+.+++.+++.. .+.+..+...++..+.+.++.+.+..++..++.++..++....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566677788889999999999999999999997 56676888999999999999886788899999999999987643
Q ss_pred c--chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHh
Q 001307 219 S--ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1103)
Q Consensus 219 ~--~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 280 (1103)
. ..++.....+|.+++.+...+++ ......++.+|..+...+|..|+|+..++-..+...
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 2 23444556677888887777653 556778999999999999999999888776666554
No 129
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0023 Score=64.65 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=118.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001307 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1103)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (1103)
+......+.+.+|..+.-++..+..+++..++.+.+.+..++-.+.+.++++...|-.+||.+++.+...+...+. ..+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3334456678899999999999999999999999999999999999999999999999999999999999888773 456
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
+.++..|+..-.. .+.-||..|-.+|..+.....+. .+++.|...+++.++.++..+..++.......+
T Consensus 169 d~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 169 DDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 6666655554444 47789999999999998887754 344556666777888888888777777666554
No 130
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.14 Score=58.13 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=83.8
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001307 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1103)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~ 463 (1103)
..++.+-.+|++|..+||-+.-.-++ .++.++..|. +-||.||+.++.+||-.|...+.. ..+.
T Consensus 563 aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~ 627 (929)
T KOG2062|consen 563 AVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAIN 627 (929)
T ss_pred cccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHH
Confidence 45678889999999999987543332 3333444444 458999999999999988765532 2333
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~ 517 (1103)
.|-....| +..-||..|+.++..+.-...+. +-|-...+...+.+.+.+.+.
T Consensus 628 lLepl~~D-~~~fVRQgAlIa~amIm~Q~t~~-~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 628 LLEPLTSD-PVDFVRQGALIALAMIMIQQTEQ-LCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHhhhhcC-hHHHHHHHHHHHHHHHHHhcccc-cCchHHHHHHHHHHHhhhhhh
Confidence 34444457 77789999999999988777654 568888888888888876553
No 131
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.33 Score=55.81 Aligned_cols=362 Identities=15% Similarity=0.141 Sum_probs=188.9
Q ss_pred CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc
Q 001307 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1103)
+-.+++=.+..++++.+...|.....+++.+.....+.+ -+...+.+-++.. +...|..|+++|..++..-
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi-----ivtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~--- 131 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI-----IVTSSLMKDMTGK-EDLYRAAAIRALCSIIDGT--- 131 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh-----hhhHHHHhhccCC-CcchhHHHHHHHHhhcCcc---
Confidence 445666677788889998888877777776665433321 1223333334443 6788999999998887531
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001307 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1103)
Q Consensus 220 ~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 299 (1103)
.++.+=+.+.+++-+.++.+...++-.=..+........+.....+.+.. .+.+.-++.-|+.++.
T Consensus 132 --------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~------~s~~~m~QyHalglLy 197 (865)
T KOG1078|consen 132 --------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAV------NSDNIMVQYHALGLLY 197 (865)
T ss_pred --------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhcc------CcHHHHHHHHHHHHHH
Confidence 12233334444444555555444432222233333333333222222211 1112233455666666
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHc-C-CCcchHH
Q 001307 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-G-GNTIVPV 377 (1103)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~ 377 (1103)
.+-++.+ -.+.+++...... ... ++ .|...+-+.+..+ . .......
T Consensus 198 qirk~dr----------la~sklv~~~~~~---~~~-----------------~~--~A~~~lir~~~~~l~~~~~~~s~ 245 (865)
T KOG1078|consen 198 QIRKNDR----------LAVSKLVQKFTRG---SLK-----------------SP--LAVCMLIRIASELLKENQQADSP 245 (865)
T ss_pred HHHhhhH----------HHHHHHHHHHccc---ccc-----------------ch--hHHHHHHHHHHHHhhhcccchhh
Confidence 6644210 1122222222110 000 00 1111122211111 0 0233445
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (1103)
+++++..++.+..-.+-.-|..++..+....+..+. +.+..+...+..+.+.+|.+|.+.|.+++...+...
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v---- 317 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV---- 317 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc----
Confidence 778888888877666666666666666554444333 366777778899999999999999999987654332
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
...-..+-..++| .+. ..|..++..+....... -.+.++..+-....+-+..-+-.+..++.+++...+.
T Consensus 318 -~~cN~elE~lItd-~Nr---sIat~AITtLLKTG~e~----sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~- 387 (865)
T KOG1078|consen 318 -TVCNLDLESLITD-SNR---SIATLAITTLLKTGTES----SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR- 387 (865)
T ss_pred -cccchhHHhhhcc-ccc---chhHHHHHHHHHhcchh----HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH-
Confidence 1222333444555 443 45666666666654432 3445555555544443333344455666666554432
Q ss_pred hHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhC
Q 001307 538 FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 538 ~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1103)
--..+|++|...|... .....+...++++..++....
T Consensus 388 ---k~~~~m~FL~~~Lr~e---Gg~e~K~aivd~Ii~iie~~p 424 (865)
T KOG1078|consen 388 ---KHTVMMNFLSNMLREE---GGFEFKRAIVDAIIDIIEENP 424 (865)
T ss_pred ---HHHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHhCc
Confidence 2234566666666552 234456667788777765443
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.3 Score=57.50 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=114.7
Q ss_pred hcCCChHHHHHHHHH-HHHhhhcCchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHH
Q 001307 31 LMSTSNEQRSEAELL-FNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSM 107 (1103)
Q Consensus 31 ~~s~d~~~r~~Ae~~-L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ 107 (1103)
+-|.+...|..|-+. +..+..-++ +...+-+++.. +.+.+++++.=.+|.+.-+. | ++..-..-+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~----P~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----K----PELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----C----HHHHHHHHHH
Confidence 444445556666554 455554222 33444455543 78899999999999886544 3 4444445566
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHH
Q 001307 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHA 187 (1103)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~ 187 (1103)
+.+-+.+ +|+.+|..+-+.++.+-. ..-|+.+++.+.+++.++++.+|..|..++..+.+..++.... .....
T Consensus 97 i~kDl~d-~N~~iR~~AlR~ls~l~~----~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~--~g~~~ 169 (757)
T COG5096 97 IQKDLQD-PNEEIRGFALRTLSLLRV----KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE--LGLID 169 (757)
T ss_pred HHhhccC-CCHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc--ccHHH
Confidence 7777776 799999998888776522 1478899999999999999999999999999888765543211 11344
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 188 VFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
.+...+.|+ ++.|...|+.++..+-..
T Consensus 170 ~l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 555666786 999999998888776543
No 133
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.48 E-value=0.045 Score=56.73 Aligned_cols=246 Identities=13% Similarity=0.199 Sum_probs=157.7
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhhhhhh-ch-hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH
Q 001307 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1103)
Q Consensus 148 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-l~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 225 (1103)
|-..++++++..|..|+.+|+.+.+..+.. +. ..+..++.++...+.|. ..+. .+++++..++..- . ....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~-~~l~gl~~L~~~~-~-~~~~-- 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQ-PALKGLLALVKMK-N-FSPE-- 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHH-HHHHHHHHHHhCc-C-CChh--
Confidence 445788899999999999999999988754 32 35777888888888653 4444 4488888888431 1 1122
Q ss_pred HhhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001307 226 QDLLPLMMRTLTESLN--NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 226 ~~~ip~ll~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
....+++.+.+... +--...|..+++.+..+.+.+...+...-..++..+++.++. +-|+.--..+++++..+..
T Consensus 77 --~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 77 --SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG-EKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 23344554443222 234567899999999999988777766666778877777754 3456666677888887776
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh-HHHHHHHHHHHcC-CCcchHHHHHH
Q 001307 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALG-GNTIVPVASEQ 381 (1103)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~l~~~ 381 (1103)
. .+ ..++.+.++..+.-+.=-. +..... .++.+ ..+.-..|-..+. .+.+.|..+|.
T Consensus 154 ~---~~-----~~~~~e~lFd~~~cYFPI~-----F~pp~~--------dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~ 212 (262)
T PF14500_consen 154 E---FD-----ISEFAEDLFDVFSCYFPIT-----FRPPPN--------DPYGITREDLKRALRNCLSSTPLFAPFAFPL 212 (262)
T ss_pred h---cc-----cchhHHHHHHHhhheeeee-----eeCCCC--------CCCCCCHHHHHHHHHHHhcCcHhhHHHHHHH
Confidence 3 22 2456677777665543210 000000 01121 1122222322222 25677889999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHH
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVL 424 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~ 424 (1103)
+.+-+.+.....|.-++..+...++..+ +.+.+|...++..+.
T Consensus 213 LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 213 LLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 9999998888899988888887766544 456778877777654
No 134
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.48 E-value=0.15 Score=58.48 Aligned_cols=312 Identities=14% Similarity=0.192 Sum_probs=155.1
Q ss_pred hHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC
Q 001307 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1103)
Q Consensus 119 ~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~ 197 (1103)
..|-.++.-++..... ++-..-+++-.....++... ..+.|..++.++..+++.-.......-..++..+...-.++
T Consensus 5 ~~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~- 82 (464)
T PF11864_consen 5 SERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD- 82 (464)
T ss_pred HHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch-
Confidence 3455555555544442 33222233322333333333 35789999999999998754422111222333332222222
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH----------h-------------CCCHHHHHHHHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL----------N-------------NGNEATAQEALEL 254 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l----------~-------------~~~~~~~~~~~~~ 254 (1103)
+...|..|+.+|..=-..+. ....+..|.+...+.... . +.+.......+..
T Consensus 83 d~~~~l~aL~~LT~~Grdi~-----~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 157 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDID-----FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQF 157 (464)
T ss_pred hHHHHHHHHHHHHcCCcCch-----hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHH
Confidence 45566667666653211110 001223333333333222 0 0123334456677
Q ss_pred HHHHHccchHHHH-HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCC
Q 001307 255 LIELAGTEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDI 333 (1103)
Q Consensus 255 l~~l~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (1103)
+..+++.....+. ..+..++..++.++......+++ ..++.++.+++.+. .-|. .-+..++..|.......
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~-~iP~------~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYG-DIPS------ESLSPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcC-cCCh------HHHHHHHHHHhhHhccc
Confidence 7777776655443 45666777777776544444444 67888888888732 1221 23444444444432211
Q ss_pred CCCcccccCCCCCccccCCCchhhHHHHHHHHHH-HcCCCcchHHHHHHH--HHhhcCCChHHHHHHHHHHHHHHhhcHH
Q 001307 334 EDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-ALGGNTIVPVASEQL--PAYLAAPEWQKHHAALIALAQIAEGCAK 410 (1103)
Q Consensus 334 ~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~l~~~l--~~~l~~~~~~~r~aal~~l~~l~~~~~~ 410 (1103)
+ ..+.+-+++..|.. +.| ..++..+...+ ...-...+...-.+|+..++.+.-+.++
T Consensus 230 ~-------------------l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~ 289 (464)
T PF11864_consen 230 S-------------------LCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE 289 (464)
T ss_pred c-------------------cchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc
Confidence 0 11223344554442 222 33333333333 1111123566677999999887766532
Q ss_pred HHHH--hHH--HHHHHHHhcCCCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHH
Q 001307 411 VMVK--NLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPAL 465 (1103)
Q Consensus 411 ~~~~--~l~--~i~~~l~~~l~d~~~~vr~~a~~~L~~l~-~~~~~~~~~~~~~~il~~l 465 (1103)
.-.+ .+. .+++.+...++..+++|-......+..+. ..+...+....++.++..+
T Consensus 290 ~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~ 349 (464)
T PF11864_consen 290 QGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDII 349 (464)
T ss_pred CCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHH
Confidence 1111 122 48899999999888888877777777766 4444433333344444333
No 135
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.47 E-value=0.0011 Score=63.41 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHH------------HHhcCCCCChhHHHHHHHHHHHhhhhhchhHH----
Q 001307 392 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSM------------VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---- 454 (1103)
Q Consensus 392 ~~r~aal~~l~~l~~~-~~~~~~~~l~~i~~~------------l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~---- 454 (1103)
+.|.+|+.+|+.+++. .+..+..|.+.++|. +...+.|+++++|.+|+.++..+.+..++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4688888888888887 444555565555543 23356899999999999999998876543221
Q ss_pred ---------------hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccccc-CchHHHHHHHHHHhhcCChh
Q 001307 455 ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 518 (1103)
Q Consensus 455 ---------------~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~ll~~L~~~l~~~~~~ 518 (1103)
...+.++=..|+..++.+.++.+....+.++..++...+.+.+. .++..++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 01122333445566666467778889999999999988766554 46788888888899999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 001307 519 VQEGALTALASVADSS 534 (1103)
Q Consensus 519 v~~~al~al~~l~~~~ 534 (1103)
++..++.++|.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999998653
No 136
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.45 E-value=0.0033 Score=61.48 Aligned_cols=135 Identities=15% Similarity=0.247 Sum_probs=95.8
Q ss_pred CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHH
Q 001307 156 SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (1103)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~ 235 (1103)
++.+|..++.+++.++...+.. ++..++.+...|+|+ ++.||..|+.++..++..- +..+-+.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d--------~ik~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILED--------MIKVKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcC--------ceeehhhhhHH
Confidence 4678999999999999887764 556677888899998 9999999999999998642 11122244344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcc-chHHHHHhHHHHHHHHHHhhcCC---CcchHHHHHHHHHHHHHHH
Q 001307 236 LTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 236 l~~~l~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~r~~a~~~l~~l~~ 303 (1103)
+..++.+++++++..|..+|.++... .+..+..++.+++..+-...... ..+.+-|...+.++.....
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 44566789999999999999999987 67777777777766554322111 2344455666666655544
No 137
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.41 E-value=0.053 Score=56.22 Aligned_cols=243 Identities=15% Similarity=0.200 Sum_probs=136.5
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH
Q 001307 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1103)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 268 (1103)
+...|+++ ++.+|..|+.+|..++..++...-. ..-+..+++.+...+. +......++..+..++... .+-..
T Consensus 4 Lg~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~L~---~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~-~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTSE-DPIIRAKALELLSEVLERLPPDFLS---RQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMK-NFSPE 76 (262)
T ss_pred hhhhhCCC-CHHHHHHHHHHHHHHHHhCCHhhcc---HHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCc-CCChh
Confidence 45677886 9999999999999999987632111 1223455666666553 5555666677887777432 22222
Q ss_pred hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001307 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1103)
Q Consensus 269 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed 348 (1103)
....++..+.+-...+......|..+++++..+.+. ..... ..+-..++..+++.+. .
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l---~~~~~~fv~~~i~~~~-g--------------- 134 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREAL---QSMGDDFVYGFIQLID-G--------------- 134 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHH---HhchhHHHHHHHHHhc-c---------------
Confidence 344555555543333344567899999999999884 21111 1122233333333221 1
Q ss_pred ccCCCchh--hHHHHHHHHHHHcCCCcchHHHHHHHHHhh----c-CC-Ch--HHHHHHHHHH-HHHHhhcHHHHHHhHH
Q 001307 349 AGESSNYS--VGQECLDRLAIALGGNTIVPVASEQLPAYL----A-AP-EW--QKHHAALIAL-AQIAEGCAKVMVKNLE 417 (1103)
Q Consensus 349 ~~~~~~~~--~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~-~~-~~--~~r~aal~~l-~~l~~~~~~~~~~~l~ 417 (1103)
|.+++. .+.+.+..+...+....+...++..+.-+. + .+ ++ -.|+.--.+| .+++ .. ..+-+
T Consensus 135 --EkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~----~~fa~ 207 (262)
T PF14500_consen 135 --EKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-ST----PLFAP 207 (262)
T ss_pred --CCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-Cc----HhhHH
Confidence 222333 244455555555543333333333332221 1 11 11 1111111111 1111 11 12345
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1103)
..+|.++..|.++.+.++..++.+|...+...+.....+|+..+...+-.
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999888776557787777776643
No 138
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.39 Score=54.45 Aligned_cols=291 Identities=14% Similarity=0.124 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC--CHhHHHHHHHHHHHhhhhhhhhch
Q 001307 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDTLT 179 (1103)
Q Consensus 102 ~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~~~~~~l~ 179 (1103)
..+.+.+.+-|.+ .++.-..-+-++|+.+...++-+...++ +-.++.|+ ..-+|+.|..+|-.+....++.+.
T Consensus 110 klvin~iknDL~s-rn~~fv~LAL~~I~niG~re~~ea~~~D----I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 110 KLVINSIKNDLSS-RNPTFVCLALHCIANIGSREMAEAFADD----IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHHHHhhhhc-CCcHHHHHHHHHHHhhccHhHHHHhhhh----hHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 3344444444554 4666566666888888776544222233 22444443 345677777777777777666543
Q ss_pred hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-------------CHH
Q 001307 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-------------NEA 246 (1103)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~-------------~~~ 246 (1103)
.......+...|.|. +..|-.++...+..++... .+.|..-+|..+..+....... .|.
T Consensus 185 --~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~-----p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 185 --PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKN-----PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcC-----CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 356677888888987 7777777777776666653 3445666666555554433221 122
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhc------------
Q 001307 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK------------ 314 (1103)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~------------ 314 (1103)
.....+..|... - ...|..+|..-.+++..+.......|. .++
T Consensus 257 L~vKl~rlLq~~-----------------------p-~~~D~~~r~~l~evl~~iLnk~~~~~~-~k~vq~~na~naVLF 311 (938)
T KOG1077|consen 257 LQVKLLRLLQIY-----------------------P-TPEDPSTRARLNEVLERILNKAQEPPK-SKKVQHSNAKNAVLF 311 (938)
T ss_pred HHHHHHHHHHhC-----------------------C-CCCCchHHHHHHHHHHHHHhccccCcc-ccchHhhhhHHHHHH
Confidence 222222222211 1 112334444444444444432111110 000
Q ss_pred -----------chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHH
Q 001307 315 -----------LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1103)
Q Consensus 315 -----------~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (1103)
.++.+.+.+..+-.++... |...+..|.+.+..|+..-...+.+..-...+.
T Consensus 312 eaI~l~~h~D~e~~ll~~~~~~Lg~fls~r-----------------E~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii 374 (938)
T KOG1077|consen 312 EAISLAIHLDSEPELLSRAVNQLGQFLSHR-----------------ETNIRYLALESMCKLASSEFSIDAVKKHQDTII 374 (938)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhhcc-----------------cccchhhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1122222222222222211 233455566666666544221122222233333
Q ss_pred Hhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001307 384 AYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1103)
Q Consensus 384 ~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (1103)
..++ ..|...|+-|+..|..+++. ...+.|+.-+++++..-++.+|+....-++-+++.+..++
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDV------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhch------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc
Confidence 4444 56778888888888887764 4567788888888888888898887777777777666554
No 139
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.40 E-value=0.19 Score=55.55 Aligned_cols=353 Identities=13% Similarity=0.114 Sum_probs=178.1
Q ss_pred CchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 001307 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH--TQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (1103)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~--~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ 130 (1103)
+.+.+...+++++.+..++.+.++..+++..++... +..+..+-+. .....-..++..|.. .+..+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 445688999999998889999999999999888764 1111111000 001122345566666 588899999999999
Q ss_pred HHhcccCCCCcch----hHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhh--hhhchhhHHHHHHHHHHhhCCCC-ChHHH
Q 001307 131 LASNILPENGWPE----LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCLTNSN-NPDVK 202 (1103)
Q Consensus 131 ia~~~~~~~~w~~----ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~--~~~l~~~~~~l~~~l~~~l~~~~-~~~vr 202 (1103)
++..... ..-.. +++.+...++++ +...+..|+.++..+...- ...+.. ...++.+...++... +....
T Consensus 128 l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 9874321 22222 344555555554 3566777888888776531 111211 113344444444431 34555
Q ss_pred HHHHHHHHHHHHhcCCcc-hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-----H-HHHHhHH-HHH
Q 001307 203 IAALNAVINFIQCLTSSA-DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-----R-FLRRQLV-DVV 274 (1103)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~-~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-----~-~~~~~~~-~l~ 274 (1103)
..++-|+ +.-.+.... ......+++|.+++++... ..+.+..-++.+|..++.... . .....+. .+.
T Consensus 205 Y~~ll~l--WlLSF~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~ 279 (429)
T cd00256 205 YQSIFCI--WLLTFNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL 279 (429)
T ss_pred HHHHHHH--HHHhccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH
Confidence 5554443 222232111 1111135677777777653 356677778888888887431 1 1111111 122
Q ss_pred HHHHHhhcC-CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCC
Q 001307 275 GSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1103)
Q Consensus 275 ~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~ 353 (1103)
+ +++.+.. +-.|+++. ..++.+....+.. -.....+..|...+..-.+ +|...= .+| .
T Consensus 280 ~-~l~~L~~rk~~DedL~-edl~~L~e~L~~~---~k~ltsfD~Y~~El~sg~L----------~WSp~H-~se----~- 338 (429)
T cd00256 280 K-TLQSLEQRKYDDEDLT-DDLKFLTEELKNS---VQDLSSFDEYKSELRSGRL----------HWSPVH-KSE----K- 338 (429)
T ss_pred H-HHHHHhcCCCCcHHHH-HHHHHHHHHHHHH---HHHcCCHHHHHHHHhcCCc----------cCCCCC-CCc----h-
Confidence 2 2222222 22344443 3344444444421 0001112223333222111 232100 000 0
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhcCCCC
Q 001307 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDP 430 (1103)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~ 430 (1103)
-|+ +-..++-. +. -.++..+.+.+ .+.++..-..|+.=+|.++...|. .+...+. .=..++..+.++
T Consensus 339 FW~---EN~~kf~~----~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~ 408 (429)
T cd00256 339 FWR---ENADRLNE----KN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE 408 (429)
T ss_pred HHH---HHHHHHHh----cc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC
Confidence 111 11111111 11 11233333444 245566667788888888877543 2222111 224577788999
Q ss_pred ChhHHHHHHHHHHHhh
Q 001307 431 HPRVRWAAINAIGQLS 446 (1103)
Q Consensus 431 ~~~vr~~a~~~L~~l~ 446 (1103)
++.||+.|+.|++.+.
T Consensus 409 d~~Vr~eAL~avQklm 424 (429)
T cd00256 409 DPNVRYEALLAVQKLM 424 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 140
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.39 E-value=0.0028 Score=60.00 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=81.8
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH---HHhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADSS 534 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l---~~~~ 534 (1103)
+..++|.++.++.. ....-+--|...+..+++..+.+.+.|.++.++..+...+++.++.+...++.++..+ ...+
T Consensus 36 y~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 55899999999988 4445567778888888887444557899999999999999999999999999999999 6778
Q ss_pred hhhhHhhHhhhhHHHHHHHhh
Q 001307 535 QEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
|+.+.||+.+++|.+--..+.
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k 135 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNK 135 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998755443
No 141
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.38 E-value=0.011 Score=60.78 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=122.7
Q ss_pred HHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch--hHH
Q 001307 380 EQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP--DLQ 454 (1103)
Q Consensus 380 ~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~--~~~ 454 (1103)
+.+..+++ +.++..++.++.+++..+..... ...+. ..++.+...+.++++.+|..|++++..++..... .+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I- 91 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI- 91 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH-
Confidence 44444555 56789999999999987543221 22222 4678888999999999999999999998865432 22
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
+.|.+.++..+... . -+..++.++..+|.++.-.-. ....+...++.++.++.+++..+|..++.++..++..-
T Consensus 92 k~~i~~Vc~~~~s~--~-lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 92 KMYIPQVCEETVSS--P-LNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 34555555544432 1 256888899999988853321 12334555677788888999999999999999998642
Q ss_pred hhhhHhhH-hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChh
Q 001307 535 QEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (1103)
Q Consensus 535 ~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1103)
. .....+ .+..+.+..++....+ ..+.-+++..+..|...++++
T Consensus 166 ~-~~~~Ll~~q~~~~~~~Lf~~~~~---~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 166 D-MTRELLSAQVLSSFLSLFNSSES---KENLLRVLTFFENINENIKKE 210 (254)
T ss_pred H-HHHHHHhccchhHHHHHHccCCc---cHHHHHHHHHHHHHHHhhCcc
Confidence 2 111222 3456666666654322 233445666677776666543
No 142
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.38 E-value=0.025 Score=60.43 Aligned_cols=196 Identities=18% Similarity=0.141 Sum_probs=131.4
Q ss_pred cCCCCChhHHHHHHHHHHHhhh-hhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc-ccccCchHH
Q 001307 426 SFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDG 503 (1103)
Q Consensus 426 ~l~d~~~~vr~~a~~~L~~l~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~l~~~l~~ 503 (1103)
.+.+.+...|.+++..+.++.. ...+++.......++..+.+.++. +..+-+..|+.++.-++-.++. ..-...+..
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 4566778899999988877664 334445467788899999999987 5556667788888888777551 123456778
Q ss_pred HHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhHhhHh--hhhHHHHH--HHhhcCC------cccchhhhHHHHH
Q 001307 504 IVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKA--ILVNATD------KSNRMLRAKSMEC 571 (1103)
Q Consensus 504 ll~~L~~~l~~~~--~~v~~~al~al~~l~~~~~~~~~~~~~--~i~~~l~~--~l~~~~~------~~~~~lr~~a~~~ 571 (1103)
+.+.|.+.+.+.. ..+|..++.|+|.+....+.+...+.. ..|..+.. +.+...+ .+...+...|+.+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8888888877654 467788888999887765554332221 23332221 2211111 1234688899999
Q ss_pred HHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc
Q 001307 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1103)
Q Consensus 572 l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1103)
.+.+...++...+...+...++.+..+..+ ++..+|..+-.+++-+.....
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh
Confidence 999999998666777778888888776553 234577777777776655544
No 143
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.029 Score=65.81 Aligned_cols=146 Identities=20% Similarity=0.258 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCC-ChhHHHHHHHHHHHhhhhhchh-HHhhhhhhhHHHHH
Q 001307 390 EWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPD-LQNQFHPQVLPALA 466 (1103)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~il~~l~ 466 (1103)
+.+.|..|.+.|++++.+.+-.-...+. .++...+..++|+ .|..|.=+|.|||++-+.+... + ...-......|.
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw-~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARW-SGRRDNAHEKLI 648 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhh-ccccccHHHHHH
Confidence 3688999999999999987654444443 6778888889984 8999999999999998766431 1 112234556677
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCcc------c----cc-----CchHHHHH----HHHHHhhcCChhHHHHHHHHH
Q 001307 467 GAMDDFQNPRVQAHAASAVLNFSENCTPE------I----LT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTAL 527 (1103)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~------~----l~-----~~l~~ll~----~L~~~l~~~~~~v~~~al~al 527 (1103)
..|.| +.++||.+|..||+.|+.+...+ . +. .-.+..+. .++..+++..+.+|.+...++
T Consensus 649 ~~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~l 727 (1387)
T KOG1517|consen 649 LLLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVAL 727 (1387)
T ss_pred HHhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHH
Confidence 78888 89999999999999999874211 0 00 11223333 566677888888998888888
Q ss_pred HHHHHhhhhh
Q 001307 528 ASVADSSQEH 537 (1103)
Q Consensus 528 ~~l~~~~~~~ 537 (1103)
+.++.....+
T Consensus 728 s~~~~g~~~~ 737 (1387)
T KOG1517|consen 728 SHFVVGYVSH 737 (1387)
T ss_pred HHHHHhhHHH
Confidence 8776554433
No 144
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.34 E-value=0.0077 Score=71.53 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=135.5
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (1103)
..+...+.-...+.|..+-.-++.+|..++...+..+.++...++|.++..+.+..+.+|.++..++-.++..
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------- 366 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------- 366 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------
Confidence 3344444445567888888899999999999999988999999999999999999999999999999888762
Q ss_pred hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc-cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
..+..+.+.+...+.+ .+|..+..+...+...+...++. ....-...+++.+.....+.+..||..++.+++.+....
T Consensus 367 ~~l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 367 TPLSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred ccHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 3466788899999999 99999999999999999888743 233567889999999999999999999999999999998
Q ss_pred hhh-hHhhHhhhh
Q 001307 535 QEH-FQKYYDAVM 546 (1103)
Q Consensus 535 ~~~-~~~~~~~i~ 546 (1103)
|+. +..|+..+-
T Consensus 446 Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 446 GEEVFKKLLKDLD 458 (815)
T ss_pred hHHHHHHHHHhhc
Confidence 875 444554443
No 145
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.028 Score=64.77 Aligned_cols=191 Identities=14% Similarity=0.224 Sum_probs=140.8
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHH
Q 001307 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1103)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~ 464 (1103)
.+.++....|-+|+..+..+++.-...-.-....++...+..++|.++.|--.|...+..+|+..+ +.++|.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d 806 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD 806 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence 344666778889999998888853222223445788899999999999999999998888886643 345666
Q ss_pred HHhh-cc--CCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhh
Q 001307 465 LAGA-MD--DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1103)
Q Consensus 465 l~~~-l~--~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~ 541 (1103)
+... .+ +...+..+...-.++..++...+ +.+..|...++...++.+++++...|..++..+|.++....-....+
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 5542 22 21223455566689999998888 45678999999999999998888889999999999988765444456
Q ss_pred HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhH
Q 001307 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1103)
Q Consensus 542 ~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~ 588 (1103)
+-++...+...... +....+|..|...+..+....| +.+.|..
T Consensus 886 ~~ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg-~dlLpil 928 (982)
T KOG4653|consen 886 FHEVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTG-EDLLPIL 928 (982)
T ss_pred HHHHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccc-hhhHHHH
Confidence 66677766666543 3456789999999999998888 6666743
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.29 E-value=0.042 Score=58.78 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=139.1
Q ss_pred cCCChHHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhc--hhHHhhhhhhhH
Q 001307 387 AAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--PDLQNQFHPQVL 462 (1103)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~~~il 462 (1103)
.+..-+.|.+++..+..+.. ..++.+......++..+.+.++-....-+..|+.+++-++-.++ ... ...+..+.
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEIFEELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHHHHHHH
Confidence 44558899999988877653 35677788888999999999988777777788899998887765 444 57788999
Q ss_pred HHHHhhccCCC-CcchHHHHHHHHHHHHhcCCcccccCchH---HHHHHHHHHh--hc----------CChhHHHHHHHH
Q 001307 463 PALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLD---GIVSKLLVLL--QN----------GKQMVQEGALTA 526 (1103)
Q Consensus 463 ~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~---~ll~~L~~~l--~~----------~~~~v~~~al~a 526 (1103)
|.|.+.+.|.. .+.+|..++.+|+..+-..+.+ . .-.. ..++.++... +. +++.+...|+.+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~-~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSD-E-EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-h-hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 99999888722 3456667776776654433322 1 1122 3344333221 11 135689999999
Q ss_pred HHHHHHhhhh-hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhCh---hhhhhhHHHHHHHHHHH
Q 001307 527 LASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK---DKFRDDAKQVMEVLMSL 598 (1103)
Q Consensus 527 l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~---~~~~~~~~~i~~~l~~l 598 (1103)
.+.++..++. .+..+....+|.|...|.. .+..+|..|-++|+.+-..... +...+..+.+++.+-++
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s----~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L 281 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDS----DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL 281 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 9999987775 4667778889999988854 3566899999999887654331 21234455555555443
No 147
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.25 E-value=1.4 Score=57.89 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=127.2
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCC-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC--CCCcchh
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPEL 144 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~-~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~--~~~w~~l 144 (1103)
+.+..++.+|.-.||++-.+.- .+..++ -..+..+...+...+....+..+|..+.+++..+...... ..+|..+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfl--e~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFL--EREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhc--chhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 4567899999998988665530 011121 1234444455666666667889999999999877654332 2599999
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch----hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc-
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS- 219 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~- 219 (1103)
+..+.....+.++..-..|+..+..++...-..+. ..+..++..+....+...+.++-..|+..|..+...+...
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999888888888888999999988765333222 2455566666555544334667777777777664433100
Q ss_pred ------------------------c------hHhH-HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH
Q 001307 220 ------------------------A------DRDR-FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1103)
Q Consensus 220 ------------------------~------~~~~-~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 267 (1103)
. ..+. ..-|+| ++..+.....++.+++|..|+..|-++...++..|.
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 0111 122444 455555566688999999999999888887765544
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.21 E-value=0.00044 Score=44.63 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhhhh
Q 001307 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1103)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (1103)
++|.+++.++|+++.||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 149
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.16 E-value=0.056 Score=61.22 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=89.8
Q ss_pred hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001307 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1103)
Q Consensus 143 ~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1103)
+-...++...+. +...+..|...+.....++|+. .+.-+..+.....|. +..||..|++.|..++..-
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~------ 90 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN------ 90 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-------
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH------
Confidence 344455555554 5678888888888888877663 455666777777887 9999999999998877642
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001307 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1103)
Q Consensus 223 ~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 302 (1103)
.++++.+..+|.++++++++.++..+=..|..+....++.. +..++..+.. ....++.+|..++.|+..-.
T Consensus 91 ---~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t---L~~lf~~i~~---~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 91 ---PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT---LTGLFSQIES---SKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHH------HS-HHHHHHHHHHHHHHG
T ss_pred ---HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHh---cccCchHHHHHHHHHHHHHH
Confidence 35677889999999998888888888888888887665422 2233333221 12346789999998886443
Q ss_pred H
Q 001307 303 E 303 (1103)
Q Consensus 303 ~ 303 (1103)
.
T Consensus 162 ~ 162 (556)
T PF05918_consen 162 K 162 (556)
T ss_dssp G
T ss_pred h
Confidence 3
No 150
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.14 E-value=0.015 Score=59.73 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=119.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcc--hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh--chhh
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--LTPH 181 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~--l~~~ 181 (1103)
+.|+..|....++.++..+..+++..+...+....+- ..++.+..++.++++..|+.|+.++..++...... +..|
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4677888876789999999999998766433323332 35788999999999999999999999887764432 3345
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1103)
+..++.... ..+-+..++.+++++|.++..... ....+...+|. +..++..++...+..++++|..+.+.
T Consensus 95 i~~Vc~~~~---s~~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~----ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETV---SSPLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPD----LLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHH----HHHHHHcCChHHHHHHHHHHHHhccC
Confidence 554444433 333366899999999998853211 22223334444 44556678889999999999998875
Q ss_pred chHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001307 262 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 262 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
. ...+..+. +....++.++.. +...++...++.++..+.+
T Consensus 165 p-~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 P-DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred H-HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 3 22222221 233344444432 3345555566666666555
No 151
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=1 Score=53.43 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccccc----CchHHHHHHHHHHhh
Q 001307 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT----PYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~----~~l~~ll~~L~~~l~ 513 (1103)
+...+|.++...+..++...+..+.|.+.+... +++.++..|..++..++..++...+. .-.+-++..+-..++
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~--~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLAS--PSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 456688888888888866666666666666554 47888899999999999888754322 223344455544444
Q ss_pred cCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcC
Q 001307 514 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT 557 (1103)
Q Consensus 514 ~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 557 (1103)
... +-.++-..+..+....+....|++..++..+...+....
T Consensus 646 ~~~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH 687 (1014)
T KOG4524|consen 646 TSG--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYH 687 (1014)
T ss_pred cCC--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhc
Confidence 221 112233444555555555677888888888888776543
No 152
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.84 Score=52.02 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHcc---CCChhHHHHHHHHHHHhcccCCCCccccC
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~~~~~L~~il~~---~~~~~~R~~a~~~L~~~i~~~~~~~w~~l 96 (1103)
-+..+|++.-++|+.+|.+.-+.|..+... -++.....|..-+.. +..|.+|..|...|.++= ..
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ---------~d 156 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ---------GD 156 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---------cC
Confidence 456667777777888887777777665442 233333334333322 566777877777776642 22
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHH-HHHHhhhhhh
Q 001307 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFL-IFAQLSQYIG 175 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~-~l~~l~~~~~ 175 (1103)
+.+....+.+.+...+..+++++||+.+--.|+ .-+..+|.+.+-..+-+...|..... ++..+ .. .
T Consensus 157 ~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~----------vdnsTlp~IveRarDV~~anRrlvY~r~lpki-d~-r 224 (892)
T KOG2025|consen 157 PKDEECPVVNLLKDLIQNDPSDEVRRAALSNIS----------VDNSTLPCIVERARDVSGANRRLVYERCLPKI-DL-R 224 (892)
T ss_pred CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhc----------cCcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hh-h
Confidence 233344566666777777777778776433221 12334566666666666555544322 22222 11 0
Q ss_pred hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHH-HHHh
Q 001307 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN-FIQC 215 (1103)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~-l~~~ 215 (1103)
...+..-..++..+++|- +..|+.++.+.+.. |+.+
T Consensus 225 ---~lsi~krv~LlewgLnDR-e~sVk~A~~d~il~~Wl~~ 261 (892)
T KOG2025|consen 225 ---SLSIDKRVLLLEWGLNDR-EFSVKGALVDAILSGWLRF 261 (892)
T ss_pred ---hhhHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHhhh
Confidence 013445667788888886 88888888877654 4443
No 153
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.05 E-value=0.62 Score=49.86 Aligned_cols=353 Identities=15% Similarity=0.118 Sum_probs=179.9
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHhcccCC--CCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 001307 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD--SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1103)
Q Consensus 56 ~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~--~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1103)
.++..++++++....++.-++...++--++..+. ...+.......+...-...+..|.. .+.-+.+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 5678888888877778888888888887777641 0111111111222222345666666 588888888888888877
Q ss_pred ccc---CCCCcchhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhh--hhc--hhhHHHHHHHHHHhhCCCCChHHHHHH
Q 001307 134 NIL---PENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG--DTL--TPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1103)
Q Consensus 134 ~~~---~~~~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~--~~l--~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1103)
.-. +.+...-....+...+++ .+...+..+.++|..+...-. ..+ ...+..+++.+. +...+..++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 421 112334456677777766 456677778888887765321 111 112344444443 222356666666
Q ss_pred HHHHHHHHHhcCCcc-hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH--HH----HhHHHHHHHHH
Q 001307 206 LNAVINFIQCLTSSA-DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF--LR----RQLVDVVGSML 278 (1103)
Q Consensus 206 ~~~l~~l~~~~~~~~-~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~--~~----~~~~~l~~~l~ 278 (1103)
+-|+--+. +.... ..-...++++.+.+++.... .+.+..-++.++..+++..+.. .+ +.+..=++..+
T Consensus 221 ifciWlLt--Fn~~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l 295 (442)
T KOG2759|consen 221 IFCIWLLT--FNPHAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL 295 (442)
T ss_pred HHHHHHhh--cCHHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH
Confidence 55543322 11100 01122356667777666543 4567777888888888876421 11 11111112222
Q ss_pred HhhcCC-CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh
Q 001307 279 QIAEAE-SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1103)
Q Consensus 279 ~~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~ 357 (1103)
+.+... -.|++++ ..++++..-.... ......+..|...+..-.+ +|...=-+ + .-|+
T Consensus 296 ~~L~~rkysDEDL~-~di~~L~e~L~~s---vq~LsSFDeY~sEl~sG~L----------~WSP~Hk~-----e-~FW~- 354 (442)
T KOG2759|consen 296 QSLEERKYSDEDLV-DDIEFLTEKLKNS---VQDLSSFDEYKSELRSGRL----------EWSPVHKS-----E-KFWR- 354 (442)
T ss_pred HHHHhcCCCcHHHH-HHHHHHHHHHHHH---HHhhccHHHHHHHHHhCCc----------CCCccccc-----c-chHH-
Confidence 333222 2344443 3455555444321 0000111123333322211 12210000 0 0111
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCCCCChhH
Q 001307 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~v 434 (1103)
+-.+++-. +. -.++..+..+++ +.++..-..|+.=+|..++..|+... .+. ..=..++..++.++|+|
T Consensus 355 --eNa~rlne----nn--yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 355 --ENADRLNE----NN--YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEV 425 (442)
T ss_pred --HhHHHHhh----cc--HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchH
Confidence 11122211 11 123444445554 34577777888888988887765321 111 12245677899999999
Q ss_pred HHHHHHHHHHhhh
Q 001307 435 RWAAINAIGQLST 447 (1103)
Q Consensus 435 r~~a~~~L~~l~~ 447 (1103)
|..|+.|+..+..
T Consensus 426 ry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 426 RYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877653
No 154
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.99 E-value=0.0076 Score=51.11 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=68.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHH
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (1103)
..|++.|.+++++.+|..++.+++.+ .-++.+|.+.+.++++++.+|..++..++.+-. +..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 35778885668999999999888832 335889999999999999999999999997731 345
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHH
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVI 210 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1103)
++.+...+.++.+..||..|+.+|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 6677777877646778999998875
No 155
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.98 E-value=0.011 Score=56.78 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHhcccCC---CCcchhHHHH-----------H-HhhcCCCHhHHHHHHHHHHHhhhhhhhh------
Q 001307 119 SISKKLCDTVSELASNILPE---NGWPELLPFM-----------F-QCVSSDSVKLQESAFLIFAQLSQYIGDT------ 177 (1103)
Q Consensus 119 ~vr~~~~~~i~~ia~~~~~~---~~w~~ll~~l-----------~-~~~~s~~~~~r~~al~~l~~l~~~~~~~------ 177 (1103)
.||..+..++..+++..-+. +.|+.++|.- + -.+.++++..|.+|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888889999998873332 5788777754 2 3446788999999999999998764321
Q ss_pred -------c-------hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001307 178 -------L-------TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1103)
Q Consensus 178 -------l-------~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~ 243 (1103)
| ..-+.++...+...+..+.+..+....++|+..++..-+-. ..-.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~---rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH---RLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh---hcCHhHHHHHHHHHHHHHhcC
Confidence 1 22345566677777887767888889999999998864311 112477888888888888888
Q ss_pred CHHHHHHHHHHHHHHHccc
Q 001307 244 NEATAQEALELLIELAGTE 262 (1103)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~ 262 (1103)
|.+++..++.++..+....
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 9999999999998887654
No 156
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.90 E-value=0.98 Score=51.59 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=90.7
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHH
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~ 147 (1103)
..+...+++|+..+-+.++.. ++..+.-.+.++....+ .+..||.++...|-.+++.. + ...+.+...
T Consensus 33 kg~~k~K~Laaq~I~kffk~F---------P~l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~-~-~~v~kvaDv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHF---------PDLQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDN-P-EHVSKVADV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC----------GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhC---------hhhHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhH-H-HHHhHHHHH
Confidence 457899999999999987663 45556666777888887 48889999888887777632 2 233778899
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhC--CCCChHHHHHHHHHHHHHHHhcCCcchHhHH
Q 001307 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT--NSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1103)
Q Consensus 148 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 225 (1103)
|.|++++.++..+...=..|..+....+.. .+-.+|.+... .. +..+|.-+++.+..-+..+...... .-
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~------tL~~lf~~i~~~~~~-de~~Re~~lkFl~~kl~~l~~~~~~-p~ 172 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG------TLTGLFSQIESSKSG-DEQVRERALKFLREKLKPLKPELLT-PQ 172 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHH---HS--HHHHHHHHHHHHHHGGGS-TTTS----
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcccC-chHHHHHHHHHHHHHHhhCcHHHhh-ch
Confidence 999999988776666656666555543322 22233333331 22 6789999999887666554322111 00
Q ss_pred HhhHHHHHHHHHHHHhC
Q 001307 226 QDLLPLMMRTLTESLNN 242 (1103)
Q Consensus 226 ~~~ip~ll~~l~~~l~~ 242 (1103)
.+.-..++..+...+++
T Consensus 173 ~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 173 KEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 11222455555566654
No 157
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.84 E-value=0.015 Score=50.82 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=79.2
Q ss_pred ccCchHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 001307 497 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1103)
Q Consensus 497 l~~~l~~ll~~L~~~l~~----~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1103)
+.+++=.++..+-..+.+ .+...|..++.+++.+.+..++....+.++++-.|...+.. ..+|..|++|.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHHH
Confidence 445555666666666655 45678999999999999988888888999999999888754 25889999999
Q ss_pred HHHHHhhChhhhhhhHHHHHHHHHHHhc
Q 001307 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQG 600 (1103)
Q Consensus 573 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~ 600 (1103)
..+.+.++.+.+.|.+++++-.++..++
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999989999999999888877543
No 158
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.83 E-value=0.043 Score=58.16 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=115.5
Q ss_pred CChHHHHHHH-HHHHHHHh-hc-HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH---H--hhhhhh
Q 001307 389 PEWQKHHAAL-IALAQIAE-GC-AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---Q--NQFHPQ 460 (1103)
Q Consensus 389 ~~~~~r~aal-~~l~~l~~-~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~---~--~~~~~~ 460 (1103)
+.|+...+.. ..+..+.. .. ...+..+.+-++|.++..+.|.++.+|..++.+|..+...+++.. . ....+.
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v 166 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV 166 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH
Confidence 3576655322 45555444 32 246778999999999999999999999999999999998776533 1 123455
Q ss_pred hHHHHHhhcc--------CCCCcchHHHHHHHHHHHHhcCCc---ccccCchHHHH-HHHHHHhhc----CChhHHHHHH
Q 001307 461 VLPALAGAMD--------DFQNPRVQAHAASAVLNFSENCTP---EILTPYLDGIV-SKLLVLLQN----GKQMVQEGAL 524 (1103)
Q Consensus 461 il~~l~~~l~--------~~~~~~v~~~a~~al~~l~~~~~~---~~l~~~l~~ll-~~L~~~l~~----~~~~v~~~al 524 (1103)
+.+.+..++. + ....+-..+..++..++..... ..-...+..++ +.+++.+.. +.+.++...+
T Consensus 167 ~~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 167 FEDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 5555665554 3 4556778888888888664311 11112233333 334444432 2478889999
Q ss_pred HHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhc
Q 001307 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1103)
Q Consensus 525 ~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1103)
..+..++..+|.....|++.+++.+.+.+.+.
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999988764
No 159
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.79 E-value=0.34 Score=53.96 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=101.9
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC
Q 001307 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1103)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~ 137 (1103)
+..|+..+....+++++..++..+.. |.. +. ....+++.|.+ .+..+|..++.+++.+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~---------~~~--~~----~~~~L~~~L~d-~~~~vr~aaa~ALg~i------ 113 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLA---------QED--AL----DLRSVLAVLQA-GPEGLCAGIQAALGWL------ 113 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhc---------cCC--hH----HHHHHHHHhcC-CCHHHHHHHHHHHhcC------
Confidence 56777777666777888776666643 221 11 24567788876 5777899888887743
Q ss_pred CCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcC
Q 001307 138 ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1103)
Q Consensus 138 ~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1103)
+.+...+.|...+.++++.+|..++.+++..-.. -.+.+...++++ ++.||..|+++++.+-..
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~-d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHE-DALVRAAALRALGELPRR-- 177 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCC-CHHHHHHHHHHHHhhccc--
Confidence 5677788888888888888888888777652211 123556667786 899999999988866431
Q ss_pred CcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001307 218 SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1103)
Q Consensus 218 ~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1103)
..+|. |...+.+.++.+|..++..+..+.
T Consensus 178 ---------~a~~~----L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 ---------LSEST----LRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------cchHH----HHHHHcCCCHHHHHHHHHHHHHcC
Confidence 12222 334466788889988888876553
No 160
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.79 E-value=0.021 Score=54.23 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHh---hhhhc
Q 001307 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEG-CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL---STDLG 450 (1103)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l---~~~~~ 450 (1103)
+...+|.+.+.+...+--.|..|...+..+.+. .++.+.+.+++++..+..+|+..++.|..+++.+|.++ ....+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 345677777888777777888888888888777 77788899999999999999999999999999999999 66777
Q ss_pred hhHHhhhhhhhHHHHHh
Q 001307 451 PDLQNQFHPQVLPALAG 467 (1103)
Q Consensus 451 ~~~~~~~~~~il~~l~~ 467 (1103)
+.+ .+|+.+++|.+--
T Consensus 116 ~aL-vPyyrqLLp~ln~ 131 (183)
T PF10274_consen 116 EAL-VPYYRQLLPVLNL 131 (183)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 777 7899999999873
No 161
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.78 E-value=0.45 Score=52.56 Aligned_cols=262 Identities=23% Similarity=0.251 Sum_probs=148.2
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1103)
.....+...+.+. +..+|..+...++.+-. . ..++.+...+.+.++.+|..+..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~-----------~----~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGS-----------E----EAVPLLRELLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhch-----------H----HHHHHHHHHhcCCCHHHHHHHHHHHHccCC---
Confidence 4556777888887 89999999887543322 1 244455566678888999999887776543
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001307 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1103)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~ 343 (1103)
+..++.++..+.+ +.+..+|..+...+..+... .. +..++..+.+......|...
T Consensus 104 -------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~------------~a----~~~l~~~l~~~~~~~a~~~~- 158 (335)
T COG1413 104 -------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDE------------RA----LDPLLEALQDEDSGSAAAAL- 158 (335)
T ss_pred -------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch------------hh----hHHHHHHhccchhhhhhhhc-
Confidence 1222233333332 46788999988877766441 11 22233333222100000000
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001307 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1103)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1103)
+...+..+..+...+..+ | .+...+.+...+.+.+..+|.++..+++.+.... ..+.+.+
T Consensus 159 ----~~~~~~~r~~a~~~l~~~----~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 ----DAALLDVRAAAAEALGEL----G----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred ----cchHHHHHHHHHHHHHHc----C----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 000011122222222222 1 2334455666777788899999999999886543 4566777
Q ss_pred HhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHH
Q 001307 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1103)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (1103)
...+.|+++.||..++..+|.+. .....+.+...+.+ .++.++..+..++. .. ....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~-----------~~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~-------~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIG-----------DEEAVDALAKALED-EDVILALLAAAALG----AL-------DLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccC-----------cchhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------Cchh
Confidence 88899999999999999987754 22455556666666 56666555544443 11 1111
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 504 IVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 504 ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
-...+...+.+....++..+..+++.+..
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 12233344445556666666555555543
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=1.7 Score=50.40 Aligned_cols=120 Identities=12% Similarity=0.129 Sum_probs=78.9
Q ss_pred chhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh---hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 142 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
++.+..+.+.+..-+-.+|..++.++..+...-|..+.. ..+.=+..+...|.|. ...+|..++-.+..++..-..
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCch
Confidence 577778888888888899999999999999887765443 2344455677778887 889999999999988875432
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc
Q 001307 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1103)
Q Consensus 219 ~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 262 (1103)
....-.|...+..+++.+.+--.....-+...|+..+..+.+.+
T Consensus 200 IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 200 IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 22222333333334443332111112235677888888888754
No 163
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.67 E-value=0.97 Score=53.16 Aligned_cols=145 Identities=11% Similarity=0.249 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1103)
...|-.+...++.++-.-. ...+..+|.+.+-|. .....+|.....+++.+|..... ..+..+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHh
Confidence 3456666666666554332 234456777776665 45567888877788887765432 3456778888999
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHH
Q 001307 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1103)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l 549 (1103)
.| +++-||..++..|.+++.. + +..+-..++=.++..+-+.++.+|..+--+++.+...-...| ++..++..+
T Consensus 1016 ~D-p~~iVRrqt~ilL~rLLq~---~-~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i 1088 (1529)
T KOG0413|consen 1016 CD-PSVIVRRQTIILLARLLQF---G-IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYI 1088 (1529)
T ss_pred cC-chHHHHHHHHHHHHHHHhh---h-hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence 99 9999999999999998753 2 234555555555555666789999999999999887655443 445555555
Q ss_pred HH
Q 001307 550 KA 551 (1103)
Q Consensus 550 ~~ 551 (1103)
..
T Consensus 1089 ~~ 1090 (1529)
T KOG0413|consen 1089 IA 1090 (1529)
T ss_pred HH
Confidence 54
No 164
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.66 E-value=0.019 Score=54.53 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=95.4
Q ss_pred chHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhhh
Q 001307 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLST 447 (1103)
Q Consensus 374 ~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~L~~l~~ 447 (1103)
-.|.+++.+...+++ .+|..|..++.++|.+..--+. .-+ .+..... +.+........ ...
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~-----~~k---~~~~~~~~~~~~~~~~~~~~~~l-----~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPY-----KHK---SIQKSLDSKSSENSNDESTDISL-----PMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH-----HHh---cccccCCccccccccccchhhHH-----hhc
Confidence 357777777777765 4699999999999988643222 111 1111111 11222222222 111
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001307 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1103)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al 527 (1103)
...+...+-|...++..|++.|+|..-..-...+..++..++...+... .||++.+++.++..+.+.+...++..+.-+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 1212221345567788899999883333445678888888888888775 799999999999999988888999988888
Q ss_pred HHHHHh
Q 001307 528 ASVADS 533 (1103)
Q Consensus 528 ~~l~~~ 533 (1103)
+.++..
T Consensus 153 ~~lv~i 158 (160)
T PF11865_consen 153 ADLVSI 158 (160)
T ss_pred HHHHHH
Confidence 887754
No 165
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.65 E-value=0.078 Score=57.03 Aligned_cols=112 Identities=20% Similarity=0.268 Sum_probs=86.5
Q ss_pred HHHHHH-HHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 416 LEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 416 l~~i~~-~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
+..++. .+.++++.+++.||..|..|||-++-.-. +...+.++.+...++. .+..|+..|+.++..++-..+.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCc
Confidence 346664 45589999999999999999999886432 3445566666666655 5789999999999999887776
Q ss_pred ccccCch--------HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 495 EILTPYL--------DGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 495 ~~l~~~l--------~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
..+.... ..++..+.+.+.+.++.++..+...++.+.-.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 5444333 47888888999999999999999999987654
No 166
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.61 E-value=0.026 Score=48.83 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=77.4
Q ss_pred ccCchHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 001307 497 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1103)
Q Consensus 497 l~~~l~~ll~~L~~~l~~~~----~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1103)
+.+++=.++..+-..+.+.+ ...|..++.+++.+++.++.....+.++++-.|...++. ..+|..|++|.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------~eL~~~al~~W 78 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHH
Confidence 44555566666666665543 356899999999999999988889999999999988853 24899999999
Q ss_pred HHHHHhhChhhhhhhHHHHHHHHHHHh
Q 001307 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1103)
Q Consensus 573 ~~i~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1103)
..+.+.+..+...|.+++++-.++..+
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888888888777643
No 167
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.60 E-value=1.4 Score=47.50 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCC----------CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh--
Q 001307 107 MLLQSIQLESAKSISKKLCDTVSELASNILPE----------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-- 174 (1103)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~----------~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~-- 174 (1103)
.|+..|.. -+-+.|+.++.+.+.+.+..... ..||+++..|+....+++... .+-.++...+++-
T Consensus 80 ~Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 80 LLIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTSHHH
T ss_pred HHHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhhHHH
Confidence 34444443 35556666666666665543322 357899999998888776432 2333444444331
Q ss_pred hhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001307 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1103)
Q Consensus 175 ~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~ 254 (1103)
...+- + ...+-.+.+....+ +-+|-..|+..+..++.... ....+.+......++..+..++.+++.-.+..+++.
T Consensus 157 ~~~iL-~-~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 157 AKIIL-Y-SECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHH-T-SGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHh-C-cHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 11110 0 11222344566776 88999999999988876521 112334455666788888888899999999999999
Q ss_pred HHHHHcc--chHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001307 255 LIELAGT--EPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1103)
Q Consensus 255 l~~l~~~--~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1103)
|+++... +...+..|+. +-+..++.++. +.+..++..|+.++.-++.+
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhC
Confidence 9999853 3455566654 45566666664 45788999999999988885
No 168
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.12 Score=54.22 Aligned_cols=147 Identities=17% Similarity=0.132 Sum_probs=99.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHH
Q 001307 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALA 466 (1103)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~ 466 (1103)
+.+...|+.|+.-|..+++.......=+--..+..++..++++++.+|..|++.||..+..-++.- ... -...++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ-EQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcccHHHHH
Confidence 457889999999888888764321110111233445559999999999999999999987654322 222 234677777
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCcccccCchH-HHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhhh
Q 001307 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~-~ll~~L~~~l~~--~~~~v~~~al~al~~l~~~~~~ 536 (1103)
..+....+..+|..|..|+..++.+..+-. ..++. .=...|..++++ .+...+..++..++.+......
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 777753566788999999999999876531 11110 014567777777 4577788888889988876543
No 169
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.58 E-value=2 Score=48.90 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=83.0
Q ss_pred chhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchh-hhhHHHH
Q 001307 562 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMS-VVMPPLL 640 (1103)
Q Consensus 562 ~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~-~i~~~ll 640 (1103)
...++.|+.|+-.+++.+..=.-.+.-.++++.++++.. +.+..+...++.++.+++.-+++-=..|+. ..+..+.
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~---dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM---DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh---CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 346788999999888876422222444456666666443 233446677777777776655543223332 3455555
Q ss_pred HhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhh--ccccHHHHHHHhc
Q 001307 641 QSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG--FFPWIDQVAPTLV 718 (1103)
Q Consensus 641 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~--~~p~~~~~~~~l~ 718 (1103)
+.....+ ...|..+++.|..+.....+. +.++-.--...+.
T Consensus 468 s~~~~~~-------------------------------------~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~ 510 (678)
T KOG1293|consen 468 SMLTDPD-------------------------------------FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLIL 510 (678)
T ss_pred HHhcCCC-------------------------------------chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHH
Confidence 5543211 012456777777777666543 3344333334455
Q ss_pred ccccccCCHHHHHHHHHhHHHHHHHH
Q 001307 719 PLLKFYFHEEVRKAAVSAMPELLRSA 744 (1103)
Q Consensus 719 ~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1103)
.+++++ ++.|+..+...+.++....
T Consensus 511 ~l~nd~-d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 511 DLINDP-DWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhhcCc
Confidence 566654 8999999999988887543
No 170
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.45 E-value=0.056 Score=61.43 Aligned_cols=255 Identities=13% Similarity=0.119 Sum_probs=161.6
Q ss_pred hCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001307 241 NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1103)
Q Consensus 241 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1103)
.-.+.+.+..-+..|.+.++..++-+.. ..+++.++..+.-.+ .+-.++.-+.... ..-.-.+|-.
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~--~kvlp~Ll~~~~~g~-------a~~~~ltpl~k~~-----k~ld~~eyq~ 329 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIA--SKVLPILLAALEFGD-------AASDFLTPLFKLG-----KDLDEEEYQV 329 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhccc-------cchhhhhHHHHhh-----hhcccccccc
Confidence 3456677777777777766666554433 234444444332111 1222232222210 0011224667
Q ss_pred HHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHH
Q 001307 321 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1103)
Q Consensus 321 ~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 400 (1103)
.++|.+++++...+. ..+-...+-+..+..++.++.+...++|.+...+.+.+...|+-.+.+
T Consensus 330 ~i~p~l~kLF~~~Dr-----------------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlks 392 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDR-----------------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKS 392 (690)
T ss_pred chhhhHHHHhcCcch-----------------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHH
Confidence 788888887765421 123233344455555665556667788899999999999999999999
Q ss_pred HHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHH
Q 001307 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1103)
Q Consensus 401 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1103)
+..++....+. ..=.+++..+-..-.|+++.+|.....|+|.++.++.+.. -...+...+.+.+.| +-+.-|.+
T Consensus 393 m~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkd-pf~paR~a 466 (690)
T KOG1243|consen 393 MAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKD-PFVPARKA 466 (690)
T ss_pred HHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcC-CCCCchhh
Confidence 99988766542 1223566666666669999999999999999998876644 233444555667888 77777888
Q ss_pred HHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 481 a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
+..++....+.+..+ ..-..|++.+....-+++..+|..+..++...-....
T Consensus 467 ~v~~l~at~~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 467 GVLALAATQEYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhHHHhhcccccchh---hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 888887776665432 3345566666666667788889888877766554433
No 171
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.44 E-value=1.9 Score=49.99 Aligned_cols=176 Identities=13% Similarity=0.160 Sum_probs=115.6
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHH--H-----hhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc
Q 001307 354 NYSVGQECLDRLAIALGGNTIVPVASEQLP--A-----YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1103)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~-----~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 426 (1103)
..+.|...|.++...+....++..++..+. . ...-.++..|.-.+..|..-.. -....+.++..+..+
T Consensus 253 V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-----Aa~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 253 VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-----AATSFPNILQIVFDG 327 (501)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-----HHhCCccHHHHHhcc
Confidence 344566677776655544444444444433 1 0001345565544444432111 123567888888899
Q ss_pred CCCC--ChhHHHHHHHHH---HHhhhhhchhHHhhhhhhhHHHHHhhcc-------CCCCcchHHHHHHHHHHHHhcCCc
Q 001307 427 FRDP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 427 l~d~--~~~vr~~a~~~L---~~l~~~~~~~~~~~~~~~il~~l~~~l~-------~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
+.++ +.++|..++..+ ......+++......-+.++..+.+.++ +......|..+..+|+.++...+.
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 9888 889999999999 8888887766545555555555555553 113457899999999999998774
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 495 ~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
- +..- -.++..|+..+....+++|..+-.|+++++.+...
T Consensus 408 l-~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 408 L-FSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred c-cccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 3 2122 45678888888888999999999999999987664
No 172
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.41 E-value=0.85 Score=49.08 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=105.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh--
Q 001307 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (1103)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-- 457 (1103)
..+...+++.+...|..|+.++|-.+--..+....++ +.+...++..+..||..|+.++..+....+.......
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l----~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHL----PLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3445677889999999999999987655444333444 4444444445899999999999998887765442222
Q ss_pred ------hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC----ChhHHHHHHHHH
Q 001307 458 ------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG----KQMVQEGALTAL 527 (1103)
Q Consensus 458 ------~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~----~~~v~~~al~al 527 (1103)
...++..+.+.+.+ .++.++..|+..+..+.-.-. +.+ -+.++..|+-..-++ +..+|...-..+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 34688888888988 788999999999998764432 111 245555554433332 344444443444
Q ss_pred HHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 528 ASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
...+.....+.....+.++|.+...+..
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444555666666666554
No 173
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.38 E-value=0.0072 Score=38.93 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhc
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1103)
++|.+.+.++|++|++|.+|..+++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4677888999999999999999999998753
No 174
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.24 E-value=2.6 Score=46.93 Aligned_cols=351 Identities=14% Similarity=0.082 Sum_probs=160.2
Q ss_pred chhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhh---chhhH---HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001307 142 PELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDT---LTPHL---KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1103)
Q Consensus 142 ~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~---l~~~~---~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1103)
+.....+.++++. ++....+..+.++..+....+.. |..+. +.....|...++.+ +.-+...++..+..++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHHh
Confidence 3444444444443 34556666666666666654331 11110 22334455567775 88899999999999987
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHccchHH--HHHhHHHHHHHHHHhhcCCCcchHHH
Q 001307 215 CLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELLIELAGTEPRF--LRRQLVDVVGSMLQIAEAESLEEGTR 291 (1103)
Q Consensus 215 ~~~~~~~~~~~~~~ip~ll~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~r 291 (1103)
+-... ......+.+++.+...+.++ +.+....++.++..++...... |.. ...++.+..++.....+-.+.
T Consensus 131 ~~~~~----~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 131 FGLAK----MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred cCccc----cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 53211 11223445666666666543 3455666788898888754322 211 124455555554322223333
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC-
Q 001307 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG- 370 (1103)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~- 370 (1103)
..++-++ ++... .+....... -..+++.+...+.....+ ...+++..++..+...-.
T Consensus 205 Y~~ll~l-WlLSF---~~~~~~~~~--~~~~i~~l~~i~k~s~KE----------------KvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 205 YQSIFCI-WLLTF---NPHAAEVLK--RLSLIQDLSDILKESTKE----------------KVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HHHHHHH-HHHhc---cHHHHHhhc--cccHHHHHHHHHHhhhhH----------------HHHHHHHHHHHHHhhcccc
Confidence 3333222 22221 111111110 023455555444322110 011223333333322110
Q ss_pred ---CCcchHHHH----HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHH--HhHHHHHHHHHhcCCCCChhHHHHHHHH
Q 001307 371 ---GNTIVPVAS----EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV--KNLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1103)
Q Consensus 371 ---~~~~~~~l~----~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1103)
.....+.++ +.+.+.++...|..-+ -..-+..+.+...+.++ ..+++...-+..+.-+-+|.=+...+|.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~Ded-L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDED-LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 001111111 1122334444443222 11122222222222111 1123333333332211122222222221
Q ss_pred HHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc--ccccCchHHHHHHHHHHhhcCChhH
Q 001307 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQNGKQMV 519 (1103)
Q Consensus 442 L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~v 519 (1103)
=.. ..+ .+.--.++..|.+.|....++.+..-||.=++.|++..+. ..+.. ++ .=..++.++.++++.|
T Consensus 342 EN~------~kf-~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~-lg-~K~~vM~Lm~h~d~~V 412 (429)
T cd00256 342 ENA------DRL-NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQ-LG-GKQRVMRLLNHEDPNV 412 (429)
T ss_pred HHH------HHH-HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHH-cC-cHHHHHHHhcCCCHHH
Confidence 100 011 1112356666777774324677778899999999988742 21111 11 2356788889999999
Q ss_pred HHHHHHHHHHHH
Q 001307 520 QEGALTALASVA 531 (1103)
Q Consensus 520 ~~~al~al~~l~ 531 (1103)
|..|+.|+..+.
T Consensus 413 r~eAL~avQklm 424 (429)
T cd00256 413 RYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999999998774
No 175
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.24 E-value=0.39 Score=53.03 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=127.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHH
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1103)
.....++..+.+++..+|..|...|..+.. ...++.+..++. +.++.+|..|+..|.+.-. ++..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~---~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~-----------~~a~ 107 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS---EEAVPLLRELLS-DEDPRVRDAAADALGELGD-----------PEAV 107 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch---HHHHHHHHHHhc-CCCHHHHHHHHHHHHccCC-----------hhHH
Confidence 467777888888889999999988877765 234687888775 5677999999997766321 2222
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC------------HhHHHHHHHHHHH
Q 001307 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS------------VKLQESAFLIFAQ 169 (1103)
Q Consensus 102 ~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~------------~~~r~~al~~l~~ 169 (1103)
..++..+..+.+..+|..++.+++.+ .++.-+..++..+++.. ...|..+...++.
T Consensus 108 ----~~li~~l~~d~~~~vR~~aa~aL~~~--------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 108 ----PPLVELLENDENEGVRAAAARALGKL--------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred ----HHHHHHHHcCCcHhHHHHHHHHHHhc--------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 24455666446999999998888865 23333555555555544 1345555555554
Q ss_pred hhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHH
Q 001307 170 LSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (1103)
Q Consensus 170 l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~ 249 (1103)
+.. +...+.+...+.+. ...||..|..+++.+.... ..+...+...+.+++..+|.
T Consensus 176 ~~~----------~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~-------------~~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 176 LGD----------PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN-------------VEAADLLVKALSDESLEVRK 231 (335)
T ss_pred cCC----------hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch-------------hhHHHHHHHHhcCCCHHHHH
Confidence 332 23445777788887 7899999999998876532 23444556667788889999
Q ss_pred HHHHHHHHHH
Q 001307 250 EALELLIELA 259 (1103)
Q Consensus 250 ~~~~~l~~l~ 259 (1103)
.++..+..+-
T Consensus 232 ~~~~~l~~~~ 241 (335)
T COG1413 232 AALLALGEIG 241 (335)
T ss_pred HHHHHhcccC
Confidence 8888777654
No 176
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.22 E-value=2.3 Score=45.69 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH---HHH-HhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhhhhhc
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK---VMV-KNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---~~~-~~l~~i~~~l~~-~l~d~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
|.++.++..++.|.+.....++..++|.++..-.. .+. ..+..++..+.+ .-.|.+.+++.+++.+|..+.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 55888889999999999999999999999875332 222 345566666555 4567889999999999998874332
Q ss_pred hhHHhhhhh-hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc--cccCchHHHHHHHHHHhhcCC
Q 001307 451 PDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--ILTPYLDGIVSKLLVLLQNGK 516 (1103)
Q Consensus 451 ~~~~~~~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~--~l~~~l~~ll~~L~~~l~~~~ 516 (1103)
.. ..+.+ .+.+.++..++. ..|.|.-.-...+..+....+.- .+ .--+.+++.|..--++++
T Consensus 394 nk--a~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL-~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 394 NK--AHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACEL-AKNPELFEKLVDWSKSPD 458 (604)
T ss_pred ch--hhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHH-hcCHHHHHHHHHhhhCCc
Confidence 21 12232 366667777776 66777777777776665443210 01 112345555555444444
No 177
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.35 Score=54.67 Aligned_cols=219 Identities=12% Similarity=0.162 Sum_probs=128.7
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhc----chhhHHHHHHHHHHHHHhcccCCCCcch
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPE 143 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ 143 (1103)
.+......++.++++- |+..+-+.+++|-+-.++.+-.. +...+..+.-++++.++..---.....+
T Consensus 99 l~ks~~~~~geI~frA---------Wkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVee 169 (1005)
T KOG1949|consen 99 LQKSLMVYIGEIYFRA---------WKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEE 169 (1005)
T ss_pred ccHHHHHHHhHHHHHH---------HHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4556667777777775 88766667777777777665431 2223334444455555543211233444
Q ss_pred hH-----HHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc-hh----hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 001307 144 LL-----PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-TP----HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1103)
Q Consensus 144 ll-----~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l-~~----~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1103)
++ |-+.+.++-+|..+|..|+.++-.+..-.++.. ++ .++.=+..+...|.|+ -+.||..|+.-+..++
T Consensus 170 ml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 43 667788888999999999888766654333322 22 2333345677888997 9999999998888776
Q ss_pred HhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHH
Q 001307 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL 293 (1103)
Q Consensus 214 ~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~ 293 (1103)
..+=.-.......+++..+.. ....+...++|...++++..++.+.. -.+.+..+++.+-..+ .|..+.+|..
T Consensus 249 s~fWe~iP~~i~~~ll~kI~d---~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l--~D~se~VRvA 321 (1005)
T KOG1949|consen 249 SKFWEMIPPTILIDLLKKITD---ELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSL--HDNSEKVRVA 321 (1005)
T ss_pred HHHHHHcCHHHHHHHHHHHHH---HhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhh--hccchhHHHH
Confidence 542000001111222222222 22224455889999999998886532 1233444444333333 2456889999
Q ss_pred HHHHHHHHHH
Q 001307 294 AIEFVITLAE 303 (1103)
Q Consensus 294 a~~~l~~l~~ 303 (1103)
+.+++..+-.
T Consensus 322 ~vd~ll~ik~ 331 (1005)
T KOG1949|consen 322 FVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHh
Confidence 9998877654
No 178
>PF05536 Neurochondrin: Neurochondrin
Probab=96.01 E-value=4.5 Score=47.32 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1103)
-..+.-|+..++.++....-.-.+.+-.-+|.++..+..... .+...|+.+|..++.. +..-..-.....++.+.+.+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHH
Confidence 345666777777776521111235666778888888876666 8888999999998843 22221223456788888887
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCccccc---CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh------hhHh
Q 001307 470 DDFQNPRVQAHAASAVLNFSENCTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE------HFQK 540 (1103)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~---~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~------~~~~ 540 (1103)
.+ .+.....|...+..++...+.+... ..+..+++.+-..+.......+-.++..++.+....+. .-..
T Consensus 150 ~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 150 PN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred Hh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 76 5677899999999998877644332 23445666666666655566677788888888776631 1124
Q ss_pred hHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChh
Q 001307 541 YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (1103)
Q Consensus 541 ~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1103)
+...+...+..++++... ..-|..++...+.+....|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~---~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLT---PSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhChH
Confidence 677888888888876433 345888999999998888843
No 179
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=2.9 Score=44.31 Aligned_cols=170 Identities=22% Similarity=0.237 Sum_probs=112.0
Q ss_pred cCCChHHHHHHHHHHHHhhhc--C------chHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHH-
Q 001307 32 MSTSNEQRSEAELLFNLCKQQ--D------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS- 102 (1103)
Q Consensus 32 ~s~d~~~r~~Ae~~L~~~~~~--~------p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~- 102 (1103)
.+.+.+.+..|-..|..+.+. + -.++ ..++..+ ++.++++|..|+-.+...+.++ +..++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl-~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNN---------P~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGL-VPLLGYL-ENSDAELRELAARVIGTAVQNN---------PKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCH-HHHHHHh-cCCcHHHHHHHHHHHHHHHhcC---------HHHHHH
Confidence 455778888898888887663 1 1222 3333333 4788999999999999998876 22222
Q ss_pred ----HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-------CCcchhHHHHHHhhcC--CCHhHHHHHHHHHHH
Q 001307 103 ----SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSS--DSVKLQESAFLIFAQ 169 (1103)
Q Consensus 103 ----~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~-------~~w~~ll~~l~~~~~s--~~~~~r~~al~~l~~ 169 (1103)
.....|+..+.++.+..+|.++-.+|+.+.++..|. ++| ..|...+++ .+...+..++.+++.
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~----~~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY----QVLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH----HHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 235678888888888899999999999999875431 233 345556666 455677788888888
Q ss_pred hhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhc
Q 001307 170 LSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1103)
Q Consensus 170 l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1103)
+.+.....-.......++.....+....+..++..++.++...+...
T Consensus 238 Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 238 LLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 88764432111222333333333333337788888888888877654
No 180
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.90 E-value=0.058 Score=46.69 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=76.9
Q ss_pred HHHHHhHHHHHHHHHhcCCCCC---h-hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHH
Q 001307 410 KVMVKNLEQVLSMVLNSFRDPH---P-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1103)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~---~-~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1103)
+++.+++=.++..+-..+.|.+ | .-|..+..+++.+.+..++.+ ..+.++++..|...+.. ++.|..|+.+.
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W 78 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHH
Confidence 3556677777777777777766 2 348899999999999877776 67788888888888875 67999999999
Q ss_pred HHHHhcCCcccccCchHHHHHHHHHHh
Q 001307 486 LNFSENCTPEILTPYLDGIVSKLLVLL 512 (1103)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~ll~~L~~~l 512 (1103)
..|+..++.+.+.|.++.++..+.+..
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999988777777776666665543
No 181
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.90 E-value=0.74 Score=51.77 Aligned_cols=239 Identities=12% Similarity=0.135 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH---HHHHHHHHHc----cCCChhHHHHHHHHHHHhcccCCCCc
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---LTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~---~~~~L~~il~----~~~~~~~R~~a~~~L~~~i~~~~~~~ 92 (1103)
|..-+.+++..+.|+|...|......|..+....++. ....+..++. .+....--.-...++...++..
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf---- 206 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF---- 206 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc----
Confidence 4567888999999999999999999888866543321 1222223332 2222222233344455555542
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 001307 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (1103)
-..+.++.+..+...++-..+...-......++.++..+...+- .--..++..+...---.+..-...-+.-+..+.+
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 22567888888888888888876566678888888888877531 1222334444443333454444556777888887
Q ss_pred hhh-hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH--HHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHH
Q 001307 173 YIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF--IQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATA 248 (1103)
Q Consensus 173 ~~~-~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~-~~~~~ 248 (1103)
..+ +.+......++..+..+++++ +..|-..|+..+.+- +..+. ..-...+|.++..+.+..+.. +..++
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~-----~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLIS-----QNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHH-----CTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 765 446667888999999999997 888988887665422 22221 112345566666655544332 66788
Q ss_pred HHHHHHHHHHHccchHHHHHhH
Q 001307 249 QEALELLIELAGTEPRFLRRQL 270 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~ 270 (1103)
..+..++..+.+..+..+....
T Consensus 359 ~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHH
Confidence 8999999999888887776643
No 182
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.87 E-value=0.075 Score=46.48 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=75.6
Q ss_pred HHHHhHHHHHHHHHhcCCC----CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHH
Q 001307 411 VMVKNLEQVLSMVLNSFRD----PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1103)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1103)
++.+++=.++..+-..+.| ....-|..+..+++.+.+..++.+ ..+.++++-.|...+.. +.++..|+.+..
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-~~~~pQI~a~L~sal~~---~~l~~~al~~W~ 79 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-SSARPQIMACLQSALEI---PELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 4455655666666666665 345678899999999999666655 66777777777777765 489999999999
Q ss_pred HHHhcCCcccccCchHHHHHHHHHHhh
Q 001307 487 NFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 487 ~l~~~~~~~~l~~~l~~ll~~L~~~l~ 513 (1103)
.|+..++.+.+.|+++.++-.+++.++
T Consensus 80 ~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999988888888888877776543
No 183
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.86 E-value=0.031 Score=52.65 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHhhcCC------------CCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHH
Q 001307 947 VKPLVGEALSRLNVVIRHP------------NALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLI 1014 (1103)
Q Consensus 947 ~~~~~~~~l~~L~~~l~~~------------~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~D~~ 1014 (1103)
+.|+++.+++.+..-..-. .++.|+..++|..|..|+..++..+.+.++...++..+..+| .|+.
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL---~D~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL---KDEH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT---SS-H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc---CCcH
Confidence 4567778888887665432 133578899999999999999999999999999999999998 4555
Q ss_pred HHH-HHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCC---CCC------CHHHHHHHHHHHHHHHhhCC
Q 001307 1015 EAK-IVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK---DLA------TEQTLSRIVNLLKQLQQTLP 1079 (1103)
Q Consensus 1015 e~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~---~~~------~~~~~~~~~~~l~~l~~~~~ 1079 (1103)
+.+ -++..|.+++...+..+.. ++..++.-+...+..+ +.. ..|....+.++...+....|
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 555 4889999999887766665 5888888888888521 111 24666777777777766665
No 184
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.075 Score=60.20 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=104.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001307 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1103)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (1103)
+.+.+++.+.++-.|+++++.++.---+.+. ...+..++. ..+|.|..||++|..+||-++-.-
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------- 586 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------- 586 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC---------
Confidence 5566777788888888888777654333211 123333333 378999999999999998876332
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~ 538 (1103)
+..+|..+..|.+.-++.||-.+.-+|+-.|.+.+.. .-+..|-.+..++...||..|+.+++.+---..+..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 2344555555554368999999999999999887743 223333344457778899999999998876555555
Q ss_pred HhhHhhhhHHHHHHHhh
Q 001307 539 QKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 539 ~~~~~~i~~~l~~~l~~ 555 (1103)
.|-+..+...+.+.+.+
T Consensus 660 ~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 660 CPKVNGFRKQLEKVIND 676 (929)
T ss_pred CchHHHHHHHHHHHhhh
Confidence 66666777777776654
No 185
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.82 E-value=3.4 Score=46.14 Aligned_cols=152 Identities=16% Similarity=0.069 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 21 ~~~l~~ll~~~~-s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
+..+..++..+. .++.+++..|--.|..... |. .+..|+..+. +.++.+|.-++.-|...= . +
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~-~~~~L~~~L~-d~~~~vr~aaa~ALg~i~----------~-~- 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED--AL-DLRSVLAVLQ-AGPEGLCAGIQAALGWLG----------G-R- 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH-HHHHHHHHhc-CCCHHHHHHHHHHHhcCC----------c-h-
Confidence 445666666663 4556676655555543332 33 2577777775 456778888877776321 1 1
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch
Q 001307 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~ 179 (1103)
.....|+..|.+ .++.+|..+..+++. +. .+-.+.+...++++++.+|..|+.+++.+...
T Consensus 117 ---~a~~~L~~~L~~-~~p~vR~aal~al~~---r~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 117 ---QAEPWLEPLLAA-SEPPGRAIGLAALGA---HR------HDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred ---HHHHHHHHHhcC-CChHHHHHHHHHHHh---hc------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 233456677765 577888766555543 11 12345667777788888888888888876542
Q ss_pred hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001307 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1103)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1103)
...+.+...+.+. ++.||..|+.++..+
T Consensus 178 ----~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 ----LSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred ----cchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 1122344557776 888888888777544
No 186
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.084 Score=57.77 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=109.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001307 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1103)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (1103)
.+.+++.+.+.-.|+++.+.++..--+.+. ..++..++.. .+|.+..||++|.-+||-+|-.- .
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------R 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecC---------c
Confidence 455666777788888887777654333221 2344555554 78999999999999999876332 1
Q ss_pred hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH
Q 001307 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539 (1103)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~ 539 (1103)
..++..++.|.+..++.||.....+|+-.|.+.+.+. . +..|-.+..+++..||..|+.+++.+.....+.+.
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~----a---~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV----A---TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH----H---HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 3455555666554688999999999999998877542 2 23333445677889999999999999888888888
Q ss_pred hhHhhhhHHHHHHHhh
Q 001307 540 KYYDAVMPFLKAILVN 555 (1103)
Q Consensus 540 ~~~~~i~~~l~~~l~~ 555 (1103)
|-+..+...+.+.+.+
T Consensus 658 p~v~~I~k~f~~vI~~ 673 (926)
T COG5116 658 PNVKRIIKKFNRVIVD 673 (926)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 8888888888887754
No 187
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=5.5 Score=46.41 Aligned_cols=179 Identities=18% Similarity=0.198 Sum_probs=110.1
Q ss_pred chhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhch-hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcC--
Q 001307 142 PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-- 217 (1103)
Q Consensus 142 ~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-- 217 (1103)
.+.++.|+.-..++ =..-|..|++.|..++......+. .-++.+++.+. +|..++++-..++..+..++..-+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~---~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQ---RDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHh---hccCCHHHHHHHHHHHHHHHhcCcch
Confidence 45666666655443 356788899999998887655432 12333333333 343567888889998888877642
Q ss_pred ----CcchHhHHHhhH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH---HHHHHHHHHhhcC
Q 001307 218 ----SSADRDRFQDLL-------PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL---VDVVGSMLQIAEA 283 (1103)
Q Consensus 218 ----~~~~~~~~~~~i-------p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~l~~~l~~~~~~ 283 (1103)
+......+..++ +..+..+...+...|..+|..+++.|..+..+.|..+...+ +.-+..++.++.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~- 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR- 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-
Confidence 111112222222 22344555566667889999999999999999887776543 234555555553
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhh
Q 001307 284 ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 330 (1103)
Q Consensus 284 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (1103)
|..+-+|..++-++..+.+ ..+..-+ + -..++++..++..+
T Consensus 177 -DsrE~IRNe~iLlL~eL~k---~n~~IQK-l-VAFENaFerLfsII 217 (970)
T KOG0946|consen 177 -DSREPIRNEAILLLSELVK---DNSSIQK-L-VAFENAFERLFSII 217 (970)
T ss_pred -hhhhhhchhHHHHHHHHHc---cCchHHH-H-HHHHHHHHHHHHHH
Confidence 3457889999999998887 3333211 1 12345555555554
No 188
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.22 Score=53.13 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCc
Q 001307 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1103)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1103)
.-++..++..+..||..|..-+..+....+... ..+...+++.+...+.| .+..||.....++..++....++.+.|+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 344557888999999999999999887744433 45777888998888888 7889999999999998887777768899
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1103)
+.-+++.+...+.+..+.+|..++..+..++..+++.|..+...+.+.....+.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877776666666655544
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.72 E-value=0.11 Score=49.51 Aligned_cols=147 Identities=14% Similarity=0.224 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcch-HHHHHHHHHHHHhcCC
Q 001307 416 LEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV-QAHAASAVLNFSENCT 493 (1103)
Q Consensus 416 l~~i~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v-~~~a~~al~~l~~~~~ 493 (1103)
.+++++.++..++. .++.+|..+.+++|.+.-- .|.. -.. ......+ ..... -..+... ..+.....
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~-----~k~---~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~ 76 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYK-----HKS---IQKSLDS-KSSENSNDESTDI-SLPMMGIS 76 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHH-----Hhc---ccccCCc-cccccccccchhh-HHhhccCC
Confidence 46788888888764 4689999999999998743 2321 110 0111111 00000 0001111 11222221
Q ss_pred cccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 001307 494 PEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1103)
Q Consensus 494 ~~~l~~~l~~ll~~L~~~l~~~~-~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1103)
+..-.-|..-.+..|+..+++++ ...+..++.++..+....+....+|+++++|.+...+.+..+ .+|...+.-+
T Consensus 77 ~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~----~~~e~~~~qL 152 (160)
T PF11865_consen 77 PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD----SLREFYFQQL 152 (160)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH----HHHHHHHHHH
Confidence 11111244556788888888776 445667889998888888888899999999999999986432 3555555555
Q ss_pred HHHHH
Q 001307 573 SLVGM 577 (1103)
Q Consensus 573 ~~i~~ 577 (1103)
+.+..
T Consensus 153 ~~lv~ 157 (160)
T PF11865_consen 153 ADLVS 157 (160)
T ss_pred HHHHH
Confidence 55544
No 190
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.16 Score=51.84 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCCcchHH---HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001307 358 GQECLDRLAIALGGNTIVPV---ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1103)
+...+.+|+..-+ +.+.+. ++-.+.+-+++..-.+-.+|+.+++.+.....+.+...++.++-.++..-.+++-.|
T Consensus 108 gLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 108 GLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 5566677765543 333333 333344455666667788999999999998888777778888888887778889999
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
|..|-.+|..+..+..|. .+++.|...+.+ .++++|..++.++.+....++
T Consensus 187 reda~kAL~aMV~~vtp~-------~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 187 REDAEKALVAMVNHVTPQ-------KLLRKLIPILQH-SNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHHhccChH-------HHHHHHHHHHhh-hchhhhhhhhccccccceecc
Confidence 999999999999887763 366667777777 889999999988888777665
No 191
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.64 E-value=16 Score=50.67 Aligned_cols=526 Identities=16% Similarity=0.142 Sum_probs=247.5
Q ss_pred hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 001307 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELL 255 (1103)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~-~~~~~~~~~~~l 255 (1103)
.+.||++-++..+..+++. ++++...+++.+.-++.....+.-.+.+...++.+++.|...+... +......|+.++
T Consensus 714 ~Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rIL 791 (3550)
T KOG0889|consen 714 SLLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRIL 791 (3550)
T ss_pred HhhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 3677889999899999987 5889999999999988876433333334556667777777776643 566778899999
Q ss_pred HHHHccchHHHHH-----------------------------hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh
Q 001307 256 IELAGTEPRFLRR-----------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1103)
Q Consensus 256 ~~l~~~~~~~~~~-----------------------------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 306 (1103)
+++...+-+++.+ .+.+.+......+.....+...|..+...+.......-
T Consensus 792 GKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~ 871 (3550)
T KOG0889|consen 792 GKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMV 871 (3550)
T ss_pred HhhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHH
Confidence 9887665433211 12344555555554444466677777766654443210
Q ss_pred ccchhhhcchhhHHHHHHHHH---HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHH
Q 001307 307 RAPGMMRKLPQFINRLFAILM---SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1103)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~---~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (1103)
..+ ..+......+.+... ....+..+...|..... .....+....-..++..+.-....+.+.+...+++.
T Consensus 872 ~~~---~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~---~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~ 945 (3550)
T KOG0889|consen 872 NLS---ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERY---KSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLE 945 (3550)
T ss_pred hhh---ccchhhHHHHHHhhcchHHHhhHhhhccccccccc---cccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHH
Confidence 011 011111111111111 00100000000100000 000000001111111111100000112222222211
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcH-------HHH--HHh--HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch-
Q 001307 384 AYLAAPEWQKHHAALIALAQIAEGCA-------KVM--VKN--LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP- 451 (1103)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~-------~~~--~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~- 451 (1103)
.. .|+-++.+......... +.. ... -.-.+++|...+...+..++.++..++..+......
T Consensus 946 ~i-------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~ 1018 (3550)
T KOG0889|consen 946 AI-------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLI 1018 (3550)
T ss_pred HH-------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHh
Confidence 11 12222221111111000 000 001 124678888899999999999999998877654321
Q ss_pred ------hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHH----
Q 001307 452 ------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE---- 521 (1103)
Q Consensus 452 ------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~---- 521 (1103)
....+..+.+++.+++.-.+ +.+.-+...+..|..+++..+...+..+...++..++-.+.+....+.+
T Consensus 1019 l~~~~~~~~lpi~~~l~~k~~~lCy~-~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~ 1097 (3550)
T KOG0889|consen 1019 LGSPERAFKLPMFEYLLEKLCHLCYD-STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLD 1097 (3550)
T ss_pred hcCcchhhccchHHHHHHHHHHHhcc-HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHH
Confidence 12235567777888877777 6677777777788888887775445556666677776666554322221
Q ss_pred HHHHHHHHHHHhhhh-----hhH-hhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHH
Q 001307 522 GALTALASVADSSQE-----HFQ-KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1103)
Q Consensus 522 ~al~al~~l~~~~~~-----~~~-~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l 595 (1103)
.+...+-.+-..+.. .-. ..+..++..+..-+.++ ...+|..+..++..++...|++ ........-+.+
T Consensus 1098 ~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~np----N~~VR~~~~~~L~~i~~~s~~~-v~~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1098 EAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNP----NSDVREFSQKLLRLISELSGKS-VVKLLEPFKDVL 1172 (3550)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC----chHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHH
Confidence 222222222211110 111 12233333333333332 2368999999999998766632 222222222222
Q ss_pred H-HHhcCCCCC-CCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhc
Q 001307 596 M-SLQGSQMET-DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITL 673 (1103)
Q Consensus 596 ~-~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 673 (1103)
+ .+....... .....-..+.++ ..|...|+.+-.|-+.+.-........ .+.+ ++++.. ..
T Consensus 1173 l~p~f~k~lr~~p~~~qig~vd~~-~fC~~l~p~~f~~~~~l~~l~~~~~~L------a~~~--------~~~~~~--i~ 1235 (3550)
T KOG0889|consen 1173 LSPIFKKPLRALPFTIQIGHLDAI-TFCLSLGPCLFDFTEELYRLKRFLIAL------ADAE--------EDELAT--IQ 1235 (3550)
T ss_pred hccccccccccCCHHHHhhhHHHH-HHHHHcCCcccCchHHHHHHHHHHHHh------hhhh--------hhhhhh--hh
Confidence 1 111101000 000111122222 234445666555544433322111100 0000 111111 11
Q ss_pred CCceeeeechhHHHHHHHHHHHHHHHHHhhh---hccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHH
Q 001307 674 GDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (1103)
Q Consensus 674 ~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~---~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 741 (1103)
....++..+...--|..+.++++......+- ...+|-++++..+.+.+.. .+.++-..+..++....
T Consensus 1236 k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~-~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1236 KTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYK-RSSELIEVALEGLRKVL 1305 (3550)
T ss_pred cccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcC-ChHHHHHHHHHHHHhhh
Confidence 1122333333233355566666666554432 3567778888877776654 36777777776655544
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.7 Score=54.98 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=138.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH--------HHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCC
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS--------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSF 91 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~--------~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~ 91 (1103)
.|+||.-+|+-++|. -.|-+|-..|..|..--|.+ ..++.+.+|+ ++..+.|..-.-+=-+.+.
T Consensus 470 PPeQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILA----- 541 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ-SSARELRPILVFIWAKILA----- 541 (1387)
T ss_pred ChHhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc-cchHhhhhhHHHHHHHHHh-----
Confidence 467888888888855 56777888888877643322 2367777776 3445666544333333322
Q ss_pred ccccCCHH-HHHHHHHHH----HHHHhh--cchhhHHHHHHHHHHHHHhcccCCCCc----chhHHHHHHhhcCC-CHhH
Q 001307 92 LWPRLSLH-TQSSLKSML----LQSIQL--ESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSD-SVKL 159 (1103)
Q Consensus 92 ~w~~l~~~-~~~~ik~~l----l~~l~~--e~~~~vr~~~~~~i~~ia~~~~~~~~w----~~ll~~l~~~~~s~-~~~~ 159 (1103)
+++. +.+-+|..- ++.|.. .-+++-|..++-+++.|.+. ++.++- .+++....+.++++ .+-.
T Consensus 542 ----vD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 542 ----VDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred ----cCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHH
Confidence 2222 233333321 222222 12457889999999999886 554432 57788888888885 6889
Q ss_pred HHHHHHHHHHhhhhhhhh-chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcch--H-------------h
Q 001307 160 QESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD--R-------------D 223 (1103)
Q Consensus 160 r~~al~~l~~l~~~~~~~-l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~-------------~ 223 (1103)
|+-.+.+|+.+-+.+.+. ..-.-..-...+...|.|+ .++||.+|+-+|+.++....+.++ . .
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~ 695 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERT 695 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhh
Confidence 999999999998765432 1101112234566778887 999999999999999985321110 0 1
Q ss_pred HHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001307 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1103)
Q Consensus 224 ~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1103)
...+.++..+..+...++++.+-++.+....|..++..+..
T Consensus 696 ~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 696 SIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred hHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 11223333333444555566666666666666655554433
No 193
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.60 E-value=4.9 Score=44.70 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=99.4
Q ss_pred HHHHhHHHHHHHHHhcCCC------C-ChhHHHHHHHHHHHhhhhh--chhHHhhhhhhhHHHHHhhccCCCCc-chHHH
Q 001307 411 VMVKNLEQVLSMVLNSFRD------P-HPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQNP-RVQAH 480 (1103)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d------~-~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~-~v~~~ 480 (1103)
.+.++++.+++.+..-+.. + +.++-..|+.++|.+.-.. ...+..++...++...+..+.+...+ .+...
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~ 111 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTH 111 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4456666666666655443 2 6678889999998876321 11121233445777777777662222 34444
Q ss_pred HHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCC
Q 001307 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (1103)
Q Consensus 481 a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~--~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 558 (1103)
..++|.. +.+++..+.......+-..+..+.+ ++..+-.+.+.++-.+....+..+....+.-+|.+...+-..
T Consensus 112 ~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~-- 187 (372)
T PF12231_consen 112 YLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSS-- 187 (372)
T ss_pred HHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 4444432 4455554444444433333333442 456677888999999998888888777776777666665432
Q ss_pred cccchhhhHHHHHHHHHHHhhChh
Q 001307 559 KSNRMLRAKSMECISLVGMAVGKD 582 (1103)
Q Consensus 559 ~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1103)
...+|.+|+.+...+...+|++
T Consensus 188 --~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 188 --AKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred --chHHHHHHHHHHHHHHHHhChh
Confidence 3346777777777777777743
No 194
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=9.9 Score=46.71 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCChHH-H----HHHHHHHHHhhhcCchHHHHHHHHHHc--cCCChhHHHHHHHHHHHhcccCC-CCcc
Q 001307 22 APFETLISHLMSTSNEQ-R----SEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDD-SFLW 93 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~-r----~~Ae~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~R~~a~~~L~~~i~~~~-~~~w 93 (1103)
.-+..+++.+-++.... . +.--..|.++...-|.-.+..+..++. ++..-..|..-..++.+.+...- ...-
T Consensus 270 sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~ 349 (1251)
T KOG0414|consen 270 SLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEEL 349 (1251)
T ss_pred HHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhh
Confidence 34566677776665433 2 222334556555444333333333322 35555666665555556554420 0001
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc-ccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 001307 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~-~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (1103)
...+.+.+..+...|.+.+.+ .++.+|..+-++...|... ..|.+.|.+++......+.+.+.-+|..|+.++..+..
T Consensus 350 ~~~sk~~r~~~le~l~erl~D-vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 350 EEMSKSLRDELLELLRERLLD-VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 122334444455556666665 7999999999999888764 45668999999999999999999999999999998887
Q ss_pred hhh
Q 001307 173 YIG 175 (1103)
Q Consensus 173 ~~~ 175 (1103)
..|
T Consensus 429 ~~P 431 (1251)
T KOG0414|consen 429 RHP 431 (1251)
T ss_pred cCC
Confidence 644
No 195
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.32 E-value=7.7 Score=45.15 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchH--HHHHHHHHHccCC-ChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDS--LTLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~--~~~~L~~il~~~~-~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
|..+|..+.||+..+|+..-+-|+++.+. +|.. =+..|++...+.. ++-+|.++.++++.-+ ..++
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~--------~Rl~ 96 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF--------DRLD 96 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh--------hcCC
Confidence 34445667899999999999998886653 2321 1466777776644 7899999999998864 5588
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001307 98 LHTQSSLKSMLLQSIQL 114 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~ 114 (1103)
.+.+..+...+++++..
T Consensus 97 ~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 97 DEERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999999984
No 196
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=12 Score=47.38 Aligned_cols=176 Identities=9% Similarity=0.082 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChh
Q 001307 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPR 433 (1103)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~ 433 (1103)
..+.-|.+.++....+....+.++..+.... .+..|++|.+.+..+..+.-...- ......++|...+...+.|....
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~ 1584 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIE 1584 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHH
Confidence 3455566666666555677788888887543 356799999988777665432111 33466778999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-CcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHh
Q 001307 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1103)
Q Consensus 434 vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l 512 (1103)
||..|..+|+-+...-.-.+ .+..-........... .......|...|+.++-.++.. +..+++..+..+....
T Consensus 1585 vre~Aa~~Lsgl~~~s~~~~----~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~-vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1585 VREEAAKCLSGLLQGSKFQF----VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYV-VPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHhcccccc----chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcccc-chhhhHHHHHHHHhhc
Confidence 99999999988765432211 1111111222222201 2233467778888888887754 4446666666555544
Q ss_pred hcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 513 QNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 513 ~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
.++ ..++..+-.+++..-+...+.
T Consensus 1660 ~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred CCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 433 456666666666655544443
No 197
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.20 E-value=3.1 Score=48.21 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=86.2
Q ss_pred CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc
Q 001307 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1103)
--..++|.|.....+.+...++.++.++..+.+.++..+ .-+.++|.+.+......+..|+..++-|+..+++.++
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-- 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-- 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--
Confidence 445678888888888888999999999999999876443 2355777776654443488999999999999997763
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhc
Q 001307 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE 282 (1103)
Q Consensus 220 ~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~ 282 (1103)
.. ..++.++. +..+.+..++......+.+...++-..+.-..-....+++.++.+..
T Consensus 462 --~~---~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 462 --KA---AVLDELLP-ILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred --HH---HhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 11 22223332 33455667888877777776666543332111112345555555443
No 198
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.96 E-value=9.3 Score=44.12 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchh
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (1103)
+++..++.++.....+++-.+|.-.+..|..+.....+.-...+..+...+...+.|..|.||..|..+|+++-..-.++
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 34455566666677788889999889888888774333223566778888889999999999999999999987432221
Q ss_pred HHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHH
Q 001307 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1103)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1103)
--.+...+...+++.|+++||.+|...+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 12566666666665599999999887764
No 199
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.89 E-value=8 Score=43.04 Aligned_cols=316 Identities=12% Similarity=0.102 Sum_probs=164.1
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHccch--HHHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-------GNEATAQEALELLIELAGTEP--RFLRR 268 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~-------~~~~~~~~~~~~l~~l~~~~~--~~~~~ 268 (1103)
+..-|..|...+...+....+........+.++.+++.+..-+.+ .+......|+++++.+..... ..+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 566777888888888777655555666777888888888776654 355677889999987775321 11111
Q ss_pred -hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 001307 269 -QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1103)
Q Consensus 269 -~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~e 347 (1103)
....++...+..+.++..+..+...++.++. . ....|... .......++..+.
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~-Q~f~~~~~--~~~~~~~l~~~l~-------------------- 139 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLS---D-QKFSPKIM--TSDRVERLLAALH-------------------- 139 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---c-CCCCCccc--chhhHHHHHHHHH--------------------
Confidence 1112444444444444444444433333222 1 00111000 0011111111111
Q ss_pred cccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC
Q 001307 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1103)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1103)
.+-..++ + -..-...+.++..+....+..+..+...-++.++..+
T Consensus 140 ----------------~i~~~~~-----------------s--~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l 184 (372)
T PF12231_consen 140 ----------------NIKNRFP-----------------S--KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL 184 (372)
T ss_pred ----------------HhhccCC-----------------c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1 1122233445555666666667777777777777777
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHH---------------hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC
Q 001307 428 RDPHPRVRWAAINAIGQLSTDLGPDLQ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 428 ~d~~~~vr~~a~~~L~~l~~~~~~~~~---------------~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
-+....+|..|..++..+...+++... ..+.+.+.+.+...+.+..+....-..-.++..+...-
T Consensus 185 ~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~ 264 (372)
T PF12231_consen 185 LSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS 264 (372)
T ss_pred hhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc
Confidence 777788888876666555555543210 01222233334444444112222223333444444221
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh---hHhhHhhhhHHHHHHHhhcCCccc-chhhhHH
Q 001307 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQKYYDAVMPFLKAILVNATDKSN-RMLRAKS 568 (1103)
Q Consensus 493 ~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~-~~lr~~a 568 (1103)
. -.-.+++...+...-.+++++++.+|..|+.+-..++.....+ ..+-+.-++.++...++....... ..++..+
T Consensus 265 ~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~l 343 (372)
T PF12231_consen 265 R-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYL 343 (372)
T ss_pred h-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHH
Confidence 1 1124678888888888999999999999999999998855432 123444444444444433222211 1345555
Q ss_pred HHHHHHH
Q 001307 569 MECISLV 575 (1103)
Q Consensus 569 ~~~l~~i 575 (1103)
+.+++.+
T Consensus 344 l~~l~~l 350 (372)
T PF12231_consen 344 LYSLCNL 350 (372)
T ss_pred HHHHhch
Confidence 5555443
No 200
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.87 E-value=5.7 Score=42.24 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=77.3
Q ss_pred cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHH
Q 001307 408 CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1103)
Q Consensus 408 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1103)
.+..+.+.++.++..+++++.|++..+...+...+..+...+++. .+...+...+-. +|.+|..|...+..
T Consensus 128 L~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 128 LGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLR 198 (307)
T ss_pred ccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHH
Confidence 334566788889999999999999999999999999998877664 234444444433 68888888877766
Q ss_pred HHhcCC-----------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001307 488 FSENCT-----------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (1103)
Q Consensus 488 l~~~~~-----------~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~ 528 (1103)
-..... ...+.+--.-++..+...+++.+.-|+..++..+-
T Consensus 199 ~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 199 RLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL 250 (307)
T ss_pred hCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 554433 11233444556777777777777777766655543
No 201
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.87 E-value=1.5 Score=50.67 Aligned_cols=230 Identities=18% Similarity=0.264 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001307 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1103)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1103)
+...+..-+..|..+....+.. -...+++|.++..+.+.. ..-...-++-.+++.... ..|...++|.+...+
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~r--v~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPAR--VLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIY 358 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHH--HHHHhhhhHHHHHhcccc--ccccccchhhhhhhccch---hhhhhhhhHHHHHHh
Confidence 3444444444555555444431 234456666666654321 111111112222222221 467788888888887
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHH
Q 001307 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1103)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l 549 (1103)
+.....++....+.-+..+.+..+++ .+.+.+++.|...+++.+..+++.++..+.++++.+...+. -+.++|.+
T Consensus 359 ~~~~~~~~~l~i~e~mdlL~~Kt~~e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l 433 (700)
T KOG2137|consen 359 SASDPKQALLFILENMDLLKEKTPPE---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRL 433 (700)
T ss_pred ccCCcccchhhHHhhHHHHHhhCChH---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHh
Confidence 74123444444444455566666654 36788899999999999999999999999999988774332 24577777
Q ss_pred HHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCc-hhhHHHHHHHHHHhHhcCCc
Q 001307 550 KAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDP-TTSYMLQAWARLCKCLGQDF 628 (1103)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 628 (1103)
..+..+. ....+|-.++.|++.++..+.+- ..++++.+++..+ ..+++ +.-.++..+.+++..-..+.
T Consensus 434 ~~l~~~t---t~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lpi~~~~-----~~~dp~iv~~~~~i~~~l~~~~~~g~ 502 (700)
T KOG2137|consen 434 KNLAFKT---TNLYVKVNVLPCLAGLIQRLDKA---AVLDELLPILKCI-----KTRDPAIVMGFLRIYEALALIIYSGV 502 (700)
T ss_pred hcchhcc---cchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHhhcccce
Confidence 7764332 23456777888888887655421 1233333333322 23344 33344444554444332222
Q ss_pred ccchhhhhHHHHHh
Q 001307 629 LPYMSVVMPPLLQS 642 (1103)
Q Consensus 629 ~p~l~~i~~~ll~~ 642 (1103)
.-....++|.+...
T Consensus 503 ev~~~~VlPlli~l 516 (700)
T KOG2137|consen 503 EVMAENVLPLLIPL 516 (700)
T ss_pred eeehhhhhhhhhhh
Confidence 22334555555443
No 202
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.83 E-value=2.5 Score=45.77 Aligned_cols=109 Identities=10% Similarity=0.185 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHH-HHhhcCCcccchhh-hHHHHHHHHHHHhhChhhhhhhHHHHHHHH
Q 001307 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNATDKSNRMLR-AKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1103)
Q Consensus 518 ~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~-~l~~~~~~~~~~lr-~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l 595 (1103)
.+|+..+..+.+.+....+. ..-.+.++|.+.. ++....+ .....| ...+.+++.+...+| +.+.++++.+++.+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~-~~p~~r~~evL~l~~~ii~kl~-~~~~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQN-SVPDAREPEVLSLMATIINKLG-ELIQPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHH-S-GGGS-HHHHHHHHHHHHHHG-GGCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhc-CCccccChhHHHHHHHHHHHHH-HhhhhhHHHHHHHH
Confidence 56788888888888766532 1133444444443 2222111 111112 346888999999998 67888888888776
Q ss_pred HH----HhcCCCCCCCchhhHHHHHHHHHHhHhcCCcc
Q 001307 596 MS----LQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 629 (1103)
Q Consensus 596 ~~----l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 629 (1103)
++ +.+...++.-..|......+..+...+-..+.
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~ 156 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALL 156 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHH
Confidence 65 44444433334677777777888777654443
No 203
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.77 E-value=1.2 Score=45.08 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=84.4
Q ss_pred HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----CCcchHHHHHHHH
Q 001307 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAV 485 (1103)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~~~~v~~~a~~al 485 (1103)
.+.-|++.+++.+ +...+...|.+|+.+|..= .=+.+++|.++..+++. ++..+-.......
T Consensus 194 ELq~YF~kvisal---~dEs~~~~r~aAl~sLr~d----------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~ 260 (450)
T COG5095 194 ELQMYFDKVISAL---LDESDEQTRDAALESLRND----------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMY 260 (450)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC----------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445666666655 3445778899998887431 12334445444444330 1122223333333
Q ss_pred HHHHhcCCcccccCchHHHHHHHHHHhhc-----CC-----hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 486 LNFSENCTPEILTPYLDGIVSKLLVLLQN-----GK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~ll~~L~~~l~~-----~~-----~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
..+..+-. -++.||+..+|+.++.++-. .+ ..+|..|...++.+....+..+....+.+...+.+.+-.
T Consensus 261 ~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD 339 (450)
T COG5095 261 SSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLD 339 (450)
T ss_pred HHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHh
Confidence 34444432 35689999999999887632 11 247888888888887776665554455555555444332
Q ss_pred cCCcccchhhhHHHHHHHHHHHh
Q 001307 556 ATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 556 ~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
.+. .....-.|+.|++.+...
T Consensus 340 ~~k--~~sT~YGalkgls~l~ke 360 (450)
T COG5095 340 REK--TESTQYGALKGLSILSKE 360 (450)
T ss_pred ccc--ccchhhhhhhhhhhhchh
Confidence 111 112233477788777653
No 204
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.72 E-value=0.83 Score=48.53 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=101.1
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc---ccC--chHHHHHHHHHHhh--------cCCh
Q 001307 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI---LTP--YLDGIVSKLLVLLQ--------NGKQ 517 (1103)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~---l~~--~l~~ll~~L~~~l~--------~~~~ 517 (1103)
+.+ +.+++-++|.++..++| ..+.++..+|.+|..+++.++... +.. ..+-+-+.+..++- +...
T Consensus 111 ~~i-~~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 111 PWI-SQHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred chH-HHhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 444 78899999999999999 899999999999999999887654 332 24444455555554 3456
Q ss_pred hHHHHHHHHHHHHHHhhhh-hhHhhHhhhh----HHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHH
Q 001307 518 MVQEGALTALASVADSSQE-HFQKYYDAVM----PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1103)
Q Consensus 518 ~v~~~al~al~~l~~~~~~-~~~~~~~~i~----~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~ 592 (1103)
.+-..++.|+-.++..... .-.++...+. ..+...+....+-.+..++...++.+..+...+| .....|+..++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG-i~~~~hL~rii 267 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG-ISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Confidence 6778888999888775421 1112222233 3343333332222245677778888999999999 66888899999
Q ss_pred HHHHHHhc
Q 001307 593 EVLMSLQG 600 (1103)
Q Consensus 593 ~~l~~l~~ 600 (1103)
..+.++..
T Consensus 268 ~~l~~~l~ 275 (282)
T PF10521_consen 268 PVLSQILE 275 (282)
T ss_pred HHHHHHhc
Confidence 88887554
No 205
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=19 Score=46.06 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHH
Q 001307 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1103)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 438 (1103)
.+.+-.|-...+ +.+-.++|.+...+.+.+-..|.-|...+|.+.......+....+.++...+..+.|.++.||..+
T Consensus 243 he~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~ 320 (1266)
T KOG1525|consen 243 HELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMEC 320 (1266)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhH
Confidence 344444444432 556668888888888999999999999999987766655556778899999999999999999998
Q ss_pred HHHHHHhhhhhch----------------------------------hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHH
Q 001307 439 INAIGQLSTDLGP----------------------------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASA 484 (1103)
Q Consensus 439 ~~~L~~l~~~~~~----------------------------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~a 484 (1103)
..+..++.-..+. .+.-.+.+.++..+...+.| ..++||..|+.-
T Consensus 321 v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~~ 399 (1266)
T KOG1525|consen 321 VESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMNG 399 (1266)
T ss_pred HHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHHH
Confidence 8876654422110 01112334466677778888 889999999999
Q ss_pred HHHHHhc--C----CcccccCchHHHHHHHHHHhhcCChhHH
Q 001307 485 VLNFSEN--C----TPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1103)
Q Consensus 485 l~~l~~~--~----~~~~l~~~l~~ll~~L~~~l~~~~~~v~ 520 (1103)
|..+..+ + +...+.+-+..+-..|+.++...+...|
T Consensus 400 LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 400 LAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 9988774 1 2222344444444555655554444444
No 206
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.61 E-value=5 Score=45.20 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=104.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHh-
Q 001307 94 PRLSLHTQSSLKSMLLQSIQL--ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL- 170 (1103)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~--e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l- 170 (1103)
..-++..++.++..+...... ..-..+|+.+...+........+..+-.+++..+-..+++-....++.....+..+
T Consensus 143 ~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vl 222 (409)
T PF01603_consen 143 DSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVL 222 (409)
T ss_dssp TSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 334566666666666555543 13444566655555544432222245566666666666543222222232233222
Q ss_pred hhhh-hhhchhhHHHHHHHHHHhhCCC-----------------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001307 171 SQYI-GDTLTPHLKHLHAVFLNCLTNS-----------------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1103)
Q Consensus 171 ~~~~-~~~l~~~~~~l~~~l~~~l~~~-----------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~l 232 (1103)
..-. ...+..+.+++...+...+..+ ++..-...-+.-+..++..+ ....+....+.+
T Consensus 223 lPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~----~~~~f~~i~~~l 298 (409)
T PF01603_consen 223 LPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL----PPEEFQKIMVPL 298 (409)
T ss_dssp GGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 1111 1112223333333333333221 13333344455555555544 345678888889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhh---cCCCcchHHHHHHHHHHHHHHH
Q 001307 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA---EAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
++.+..++++++..+...|+..|..-- ....+..+-..+++.++..+ ...+.+..+|..+...+..+.+
T Consensus 299 f~~la~ci~S~h~qVAErAl~~w~n~~--~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 299 FKRLAKCISSPHFQVAERALYFWNNEY--FLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHTSSSHHHHHHHHGGGGSHH--HHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHCCHH--HHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999887764210 01122333334444444432 2347889999999999988877
No 207
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.58 E-value=5.8 Score=43.05 Aligned_cols=202 Identities=19% Similarity=0.208 Sum_probs=107.4
Q ss_pred CchHHHHHHHHHHccC-CChhHHHHHHHHHHHhcccCCCCccccC---CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 001307 53 DPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPRL---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (1103)
Q Consensus 53 ~p~~~~~~L~~il~~~-~~~~~R~~a~~~L~~~i~~~~~~~w~~l---~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i 128 (1103)
+.+.+...++.++.+. .++++.++...++..++..+. .....+ ........-..+++.+.. ++..++..++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iL 129 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFIL 129 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 4445666677777764 899999999999999887752 211111 111111244567776665 6999999999999
Q ss_pred HHHHhcccCCCCcc---hhHHHHHHhhcC----CCHhHHHHHHHHHHHhhhhh--hhhchhhHHHHHHHHHHhh-----C
Q 001307 129 SELASNILPENGWP---ELLPFMFQCVSS----DSVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCL-----T 194 (1103)
Q Consensus 129 ~~ia~~~~~~~~w~---~ll~~l~~~~~s----~~~~~r~~al~~l~~l~~~~--~~~l~~~~~~l~~~l~~~l-----~ 194 (1103)
+.++...-. ..-. +.++.+++++.+ ++...+..++.++..+...- ...+.. ...++.+...+ .
T Consensus 130 t~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----
T ss_pred HHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc
Confidence 999886433 2333 677888887765 33455688889988887541 122211 34444555555 2
Q ss_pred C-CCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001307 195 N-SNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 195 ~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
+ ..+..+...++-|+ +.-.+... ....+ ..++|.+++.+.. +..+.+..-++.+|..+++..++.
T Consensus 207 ~~~~~~Ql~Y~~ll~l--WlLSF~~~-~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCL--WLLSFEPE-IAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ----HHHHHHHHHHHH--HHHTTSHH-HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSSTT
T ss_pred CCCCchhHHHHHHHHH--HHHhcCHH-HHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHHH
Confidence 2 22344555554433 33233211 11111 2367777777765 346788888899999999877653
No 208
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.42 E-value=18 Score=44.94 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=101.4
Q ss_pred CCcc--hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh-hHHHHHHH---------HHHhhCCCCChHHHHHHH
Q 001307 139 NGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAV---------FLNCLTNSNNPDVKIAAL 206 (1103)
Q Consensus 139 ~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~---------l~~~l~~~~~~~vr~~a~ 206 (1103)
.+|| .++..|.+.+-++.|..|+++...+..+.+..+..+.. .++.++-. |.....+..-..||.+..
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4786 46778888888999999999999999888875544321 12222221 222223322457999999
Q ss_pred HHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCc
Q 001307 207 NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL 286 (1103)
Q Consensus 207 ~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 286 (1103)
++|+.++.++. ...+...++.+...+..++++.+...+..+..........+...+..+++.++.-+. +.
T Consensus 151 q~L~~~l~~~~--------~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~--ds 220 (1549)
T KOG0392|consen 151 QALGAYLKHMD--------ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLE--DS 220 (1549)
T ss_pred HHHHHHHHhhh--------hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hc
Confidence 99999998763 122334555555556666888888887777655554444444445555565555553 45
Q ss_pred chHHHHHHHHHHHHHHHh
Q 001307 287 EEGTRHLAIEFVITLAEA 304 (1103)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~ 304 (1103)
++++|..|..++..+...
T Consensus 221 ~ddv~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSI 238 (1549)
T ss_pred chHHHHHHHHHhhhhhHH
Confidence 788898888888877764
No 209
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.37 E-value=3.2 Score=41.75 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=49.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCC--CChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001307 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1103)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d--~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (1103)
..+.+...+.+-..++-..+++|++.. .+-++.+...+.| ..|.||..|..+||.+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~----------- 97 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------- 97 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-----------
Confidence 333333333333444445555555432 2345555555554 46788888888888765
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
.+.+++.+-+..+| +...|+..+-.|+..+-
T Consensus 98 ~~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 98 DPESLEILTKYIKD-PCKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence 12344555555566 77777777666666653
No 210
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.35 E-value=4.7 Score=43.60 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHH----HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhhh
Q 001307 390 EWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFH 458 (1103)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-------~~~~~~~ 458 (1103)
-+..|..-...+..+.+.|...+. ..+..++..+..++++++..|...++.++..+.+.+.. .+...|+
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 488999999999999988766443 46778999999999999999999999999998887654 3334566
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
-.++..++..+.|..+...-..-+..|..+.
T Consensus 213 ~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 6777777787877333333344445555555
No 211
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.24 E-value=2.6 Score=42.74 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=84.0
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhh
Q 001307 770 PALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 849 (1103)
Q Consensus 770 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 849 (1103)
.+.+..+.+|.+...+.++++++.. .+.+.++++.+...+.+...+.-
T Consensus 200 ~kvisal~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl---------------------- 247 (450)
T COG5095 200 DKVISALLDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNL---------------------- 247 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhh----------------------
Confidence 3445556677778888888887752 23345555555555554332211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccC----CCCH-----HHHHHHHHHHHHHHhhhhhhhhh-
Q 001307 850 NEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK----DKTA-----EERRIAICIFDDVAEQCREAALK- 919 (1103)
Q Consensus 850 ~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~-----~~r~~a~~~l~~l~~~~~~~~~~- 919 (1103)
.+-+++..+..+...+.++-.-.+.||+.+++|.++.++-. ..+. ..|..|..+++-++...+..-..
T Consensus 248 --~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktL 325 (450)
T COG5095 248 --KNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTL 325 (450)
T ss_pred --hhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 12235666667677777654334569999999988886521 1122 36778888888888777765432
Q ss_pred ---hHHhHHHHHHH---------HHHHHHHHHHhhc
Q 001307 920 ---YYETYLPFLLE---------AAVYGLGVCAEFG 943 (1103)
Q Consensus 920 ---~~~~~l~~l~~---------~a~~~lg~l~~~~ 943 (1103)
....++.+++. .|.+|+..+....
T Consensus 326 kPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 326 KPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred chHHHHHHHHHHHhcccccchhhhhhhhhhhhchhh
Confidence 23444455544 6777777776544
No 212
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.17 E-value=12 Score=42.08 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc-Cc--hHHHHHHHHHHcc---CCChhHHHHHHHHHHHhcccCCCCccccC
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DP--DSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p--~~~~~~L~~il~~---~~~~~~R~~a~~~L~~~i~~~~~~~w~~l 96 (1103)
.+..+|+++-|+|..+|.+.-+.|..+... .+ +.....|+.-+.. +..+.+|.-|...|-+ +..+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~---------~Qe~ 162 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY---------YQEM 162 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH---------HHhc
Confidence 577889999999999999999988776542 12 2333444444433 6778999999999987 4455
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHH-HHHHHHHHhhhhhh
Q 001307 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQE-SAFLIFAQLSQYIG 175 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~-~al~~l~~l~~~~~ 175 (1103)
+.+..+.+++.+...++.+|+.+||+.+.--| .. -+...|++.+-..+-+...|. .--++|..+-+.-.
T Consensus 163 ~~neen~~~n~l~~~vqnDPS~EVRr~allni------~v----dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ 232 (885)
T COG5218 163 ELNEENRIVNLLKDIVQNDPSDEVRRLALLNI------SV----DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS 232 (885)
T ss_pred cCChHHHHHHHHHHHHhcCcHHHHHHHHHHHe------ee----CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh
Confidence 56677788888888898889999999743221 12 234466777777776654443 22344444433221
Q ss_pred hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 001307 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1103)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1103)
..+.++ ++ ++..++.|- +..|+.++..++.
T Consensus 233 lsi~kr---i~-l~ewgl~dR-e~sv~~a~~d~ia 262 (885)
T COG5218 233 LSIDKR---IL-LMEWGLLDR-EFSVKGALVDAIA 262 (885)
T ss_pred ccccce---eh-hhhhcchhh-hhhHHHHHHHHHH
Confidence 222222 11 556677775 6777777766654
No 213
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=94.14 E-value=33 Score=46.95 Aligned_cols=263 Identities=15% Similarity=0.161 Sum_probs=145.2
Q ss_pred hcCCCCChhHHHHHHHHHHHhhhhhch------hHHhhhhhhhHHHHHhh-ccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 425 NSFRDPHPRVRWAAINAIGQLSTDLGP------DLQNQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 425 ~~l~d~~~~vr~~a~~~L~~l~~~~~~------~~~~~~~~~il~~l~~~-l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
..+...++.+|..+..++..+...... .. .++...++..+... +.+ +++.++.+....+. +.+.+.
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~-~~~v~~vl~~ll~~aia~-~~~~i~~~v~~~l~---~~~~~~-- 560 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHA-LQVVKEVLSALLTVAIAD-TDPDIRIRVLSSLN---ERFDAQ-- 560 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchH-HHHHHHHHHHHHHHhccC-CCcchhhhHHhhhc---cchhhh--
Confidence 345567888999887776665544322 11 13455566666554 344 67777766655544 211111
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHH--HHHHHHH
Q 001307 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS--MECISLV 575 (1103)
Q Consensus 498 ~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a--~~~l~~i 575 (1103)
--.+..+..++..+.+..-.+++.+...+|.++...+..+.|++........+-++-. .....+... ..+....
T Consensus 561 -laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s---g~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 561 -LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS---GMARTKEESAKLLCELII 636 (2341)
T ss_pred -hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc---chHHhHHHHHHHhhHHHH
Confidence 1224445557777777778888888888888877555333344443333333222211 001111110 1111112
Q ss_pred HHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCC
Q 001307 576 GMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAD 655 (1103)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~ 655 (1103)
+.. ..+.||...++..++..... .+..+-..+..+.+.+|.+.|.++..++...++.+.+.+...
T Consensus 637 ~~~---~~i~~~v~~~l~~~~~~~~~---~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~--------- 701 (2341)
T KOG0891|consen 637 SSP---VLISPYVGPILLVLLPKLQD---PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQ--------- 701 (2341)
T ss_pred HHH---HHHHhhcCchHHHHHHHHhc---cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHh---------
Confidence 222 33667777777666653321 122344577888999999999888888877777777666411
Q ss_pred CCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHhcccccccCCHHHHHHH
Q 001307 656 SDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAA 733 (1103)
Q Consensus 656 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~vr~~a 733 (1103)
+....+..++.+++.+....+-...||. +.++..+...........+|..+
T Consensus 702 ---------------------------s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~ 754 (2341)
T KOG0891|consen 702 ---------------------------SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREA 754 (2341)
T ss_pred ---------------------------hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHH
Confidence 0011244566777777777666666654 44455444433333456677777
Q ss_pred HHhHHHH
Q 001307 734 VSAMPEL 740 (1103)
Q Consensus 734 ~~~l~~l 740 (1103)
...++.+
T Consensus 755 v~~~g~~ 761 (2341)
T KOG0891|consen 755 IRLLGLL 761 (2341)
T ss_pred HHHhhhh
Confidence 7776643
No 214
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.09 E-value=1.3 Score=49.16 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhc-C---CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC--------
Q 001307 360 ECLDRLAIALGGNTIVPVASEQLPAYLA-A---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-------- 427 (1103)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~---~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-------- 427 (1103)
++|..|...-|-..++|.+..++.+... + .+...-...+....++..+..-.+.+|+..++|.++.++
T Consensus 226 eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 226 EALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 4555555444434455555554444332 1 233333444455555665555577899999999988875
Q ss_pred --CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CCcchHHHHHHHHHHHHhcCCcccccCchHHH
Q 001307 428 --RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1103)
Q Consensus 428 --~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~l 504 (1103)
.|.++.+|.-|+..+..++..++... ....+.++..+.+.+.|. ........++..|..|-...-...+.|.+...
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~ 384 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEY 384 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHH
Confidence 35678899999999999999987766 456677888888888873 22334455555555554433333455666666
Q ss_pred HHHHHHHhh
Q 001307 505 VSKLLVLLQ 513 (1103)
Q Consensus 505 l~~L~~~l~ 513 (1103)
...+...+.
T Consensus 385 ~~~l~~~l~ 393 (576)
T KOG2549|consen 385 NERLQSVLD 393 (576)
T ss_pred HHHhhhhcc
Confidence 665555443
No 215
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.06 E-value=6.7 Score=40.31 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=108.2
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHH
Q 001307 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQ 110 (1103)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~ 110 (1103)
.+++.....-+.|.++...+- ...+..++.+. +......+..+..++-++.+.+ ...+ +..+..+....++
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~----~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN----DRHF-PFLQPLLLLLILR 86 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----chHH-HHHHHHHHHHHhh
Confidence 455566666666666655330 12233334333 3444555556666666654433 1111 2223333322222
Q ss_pred HHh----hcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhh-cCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHH
Q 001307 111 SIQ----LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1103)
Q Consensus 111 ~l~----~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~-~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (1103)
... .+......-..+..+..+++. .| +.|+++++.+.+++ .+.++..+..+++.+..+++.---.+. ..
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~----s~ 160 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCS-RP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY----SA 160 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHh-Ch-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH----HH
Confidence 111 123444555556777777774 45 49999999999999 677888899999999999964322222 22
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC-cchHhHHHhhHHHHHHHHHHHHhCCCHH
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~ip~ll~~l~~~l~~~~~~ 246 (1103)
...+.+-+..+..+.+ ++.+.+++..++. ..+.+.+..+...++..+.+.....+.+
T Consensus 161 w~vl~~~l~~~~rp~v----~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 161 WKVLQKKLSLDYRPLV----LKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHhcCCccchHH----HHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 2344444444323444 3434444443322 1234556777778888888887765543
No 216
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.03 E-value=0.41 Score=52.18 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhc--CC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC---------
Q 001307 360 ECLDRLAIALGGNTIVPVASEQLPAYLA--AP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--------- 427 (1103)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--------- 427 (1103)
.+|..|...-|-..++|.++.++.+.+. .. ++..-...+....++..+..-.+.+|+.+++|.++.++
T Consensus 197 ~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 197 EALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 4566666555556677777777665443 12 56665666667777776666577899999999988876
Q ss_pred -CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcc-hHHHHHHHHHHH
Q 001307 428 -RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNF 488 (1103)
Q Consensus 428 -~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l 488 (1103)
.+.++.+|.-|+..++.++..++... ....+.++..+.+.+.|...+. ..-.|...|..|
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34578999999999999999887655 4456677777888777722232 244455444443
No 217
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.75 E-value=0.98 Score=38.05 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=66.6
Q ss_pred hHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHh
Q 001307 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1103)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~ 540 (1103)
.+...+..++| +.+.+|.++...|..+++.-. ......+.++..++..++++++.|--.|+.+++.++...+..
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~--- 77 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE--- 77 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH---
Confidence 34556677888 888999999999999998866 123467899999999999999999999999999999876653
Q ss_pred hHhhhhHHHHHHH
Q 001307 541 YYDAVMPFLKAIL 553 (1103)
Q Consensus 541 ~~~~i~~~l~~~l 553 (1103)
++|.|.+..
T Consensus 78 ----vl~~L~~~y 86 (92)
T PF10363_consen 78 ----VLPILLDEY 86 (92)
T ss_pred ----HHHHHHHHH
Confidence 555555544
No 218
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=10 Score=48.40 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH
Q 001307 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1103)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 267 (1103)
.+.+-+... ++..+.-|+..+..++... +.+....++|.....+..++.+++..+|......+..+.....+.+.
T Consensus 45 ~I~kkL~Kk-D~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 45 IIVKKLLKR-DETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred HHHHHHhcc-ChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444454 7899999999999988764 33445557888888888888899999999999999999999899999
Q ss_pred HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001307 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1103)
Q Consensus 268 ~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1103)
|++..+++..+-.. -+.+-.+...|...+...
T Consensus 120 p~LK~li~~wl~~~--~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQ--FDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred HHHHhhhhhhhhee--cccchHHHHHHHHHHHhh
Confidence 99999998766433 344556666665555443
No 219
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=1.1 Score=48.11 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=101.3
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001307 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1103)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~ 463 (1103)
..+.+-+-++|.-|+..+..+....+..+..++..+++.+.....|.+..||.....++..+.....+.-+..+..-+++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 34567788999999999998887777777788889999999999999999999999998886665555445788889999
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHH
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~ 511 (1103)
.+...+.+ -.+.+|.-+...+..+++.+++.. ..+...+++.+...
T Consensus 145 yi~~AMTh-it~~i~~dslkfL~~Ll~~~~p~~-~~~~~~il~n~~d~ 190 (393)
T KOG2149|consen 145 YISSAMTH-ITPEIQEDSLKFLSLLLERYPDTF-SRYASKILENFKDV 190 (393)
T ss_pred HHHHHHhh-ccHHHHHhhHHHHHHHHHHcChHH-HHHHHHHHHHHHHH
Confidence 99999998 889999999999999999988653 33333344444433
No 220
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.53 E-value=1.2 Score=51.23 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001307 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1103)
Q Consensus 269 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed 348 (1103)
|-..++++++++... .|..+|..-++-+..+++. .+ + ..+-.+++|.+...+.+.+
T Consensus 327 yq~~i~p~l~kLF~~--~Dr~iR~~LL~~i~~~i~~---Lt---~--~~~~d~I~phv~~G~~DTn-------------- 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS--PDRQIRLLLLQYIEKYIDH---LT---K--QILNDQIFPHVALGFLDTN-------------- 382 (690)
T ss_pred cccchhhhHHHHhcC--cchHHHHHHHHhHHHHhhh---cC---H--HhhcchhHHHHHhhcccCC--------------
Confidence 334567777777743 4678888877777766662 11 0 1244678888887776542
Q ss_pred ccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhcC
Q 001307 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSF 427 (1103)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l 427 (1103)
...+.....++..++..++.+.+-..++..+...-.+.+...|.-...++|.++....... ... +.......+
T Consensus 383 ---~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftral 456 (690)
T KOG1243|consen 383 ---ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRAL 456 (690)
T ss_pred ---HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhh
Confidence 2244456667777777777554555677777665556667777777777887765432211 122 233445578
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 428 ~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
+|+-+.-|.++.+.+....+.+.. ......|+|.+....-| ++..||..|..++..+.+....
T Consensus 457 kdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd-~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 457 KDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVD-PEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccC-cccchhhHHHHHHHHHHhhhhh
Confidence 999888999999998877766543 45677889999888888 8899999999999988776653
No 221
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.52 E-value=17 Score=42.81 Aligned_cols=364 Identities=15% Similarity=0.165 Sum_probs=175.3
Q ss_pred cch-hHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHH--HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcC
Q 001307 141 WPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL--HAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1103)
Q Consensus 141 w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1103)
|-+ -+|..++++.+.++..+-.|...+..+|-.... .+..+.++ ++.++..+... ..+|+..|+.++.+++-.-.
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccC
Confidence 643 367888888888887777777777777654322 22223332 35667778886 99999999999999986432
Q ss_pred C--cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHhHHHHHHHHHHhh---cCCCc---
Q 001307 218 S--SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQIA---EAESL--- 286 (1103)
Q Consensus 218 ~--~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~~---~~~~~--- 286 (1103)
. +...-....-+|.+++.+.+ ..|.+++..+-.+|..|.++.. ..+..-+..+...++.-. .+.+.
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 2 11111123447777777765 3577888888888887776521 111122222222111100 11111
Q ss_pred --chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHH
Q 001307 287 --EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDR 364 (1103)
Q Consensus 287 --~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~ 364 (1103)
+.++-..+..+|..+......+-..+++....+..++-.+-..+....-| +. .-..+...+..
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d--------------~K-~VENcvCilRN 449 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLD--------------SK-SVENCVCILRN 449 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcccc--------------ch-hHHHHHHHHhh
Confidence 13333444555554443211111123344444555544443333221100 00 11111122222
Q ss_pred HHHHcCCCcchHHHHHHHHHhh---cCCChHHHHHHHHHHHHHHhh----c-----HH-HHHH------hHHHHHHHHHh
Q 001307 365 LAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEG----C-----AK-VMVK------NLEQVLSMVLN 425 (1103)
Q Consensus 365 l~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~----~-----~~-~~~~------~l~~i~~~l~~ 425 (1103)
++-.+- .++-+...+.+...- ...... ...-+++.-.+. + ++ ...+ .-+.++..-+.
T Consensus 450 LSYrl~-~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~ 525 (717)
T KOG1048|consen 450 LSYRLE-AEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLL 525 (717)
T ss_pred cCchhh-hhcCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHH
Confidence 221111 111111111111000 000000 000011111110 0 00 0001 12455555444
Q ss_pred cCC-CCChhHHHHHHHHHHHhhhhhchh---HHhh--hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q 001307 426 SFR-DPHPRVRWAAINAIGQLSTDLGPD---LQNQ--FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1103)
Q Consensus 426 ~l~-d~~~~vr~~a~~~L~~l~~~~~~~---~~~~--~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1103)
.+. ..++.+.++++-+|..++-..... +... --+..+|.++..+.. .+..|...++.+|.++..+.....+..
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~-~~~~vv~s~a~~LrNls~d~rnk~lig 604 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN-DDSDVVRSAAGALRNLSRDIRNKELIG 604 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc-CCchHHHHHHHHHhhhccCchhhhhhh
Confidence 444 457788888888888877543221 1111 134567889999988 888999999999999987765332211
Q ss_pred chHHHHHHHHHHhhcCC------hhHHHHHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGK------QMVQEGALTALASVA 531 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~------~~v~~~al~al~~l~ 531 (1103)
...|+.|...+.... .+.-..++.++..+.
T Consensus 605 --k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 605 --KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred --cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 344566666665543 233344444444444
No 222
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.24 E-value=5.7 Score=44.44 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=96.8
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-------CCcchHHHHHHH
Q 001307 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-------QNPRVQAHAASA 484 (1103)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~~v~~~a~~a 484 (1103)
..-|+++|...+.. .++..|..|+..|.. +.=+..++|.++..+.+. .+-+.-......
T Consensus 205 lQlYy~~It~a~~g----~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 205 LQLYYKEITEACTG----SDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 34456666665544 788899999988754 122345566665555441 122222333333
Q ss_pred HHHHHhcCCcccccCchHHHHHHHHHHhhcC----------ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHh
Q 001307 485 VLNFSENCTPEILTPYLDGIVSKLLVLLQNG----------KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1103)
Q Consensus 485 l~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~----------~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1103)
+..+.++-. =.+.||+..+++.++.++-+. ...+|.-|...++.++...+.........+...+...+.
T Consensus 271 ~rSLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 271 VRSLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALL 349 (576)
T ss_pred HHHHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 444444422 347899999999999987432 456899999999988887777655556667777777665
Q ss_pred hcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHH
Q 001307 555 NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 593 (1103)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~ 593 (1103)
... .....+-.++.++..++..+-+--+.|.+.....
T Consensus 350 D~~--~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~ 386 (576)
T KOG2549|consen 350 DNK--KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNE 386 (576)
T ss_pred CCC--CCchhhhhHHHHHHHhhhhhhhheeccchHHHHH
Confidence 421 2233344456666666543221223344444433
No 223
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.23 E-value=20 Score=41.42 Aligned_cols=243 Identities=14% Similarity=0.079 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHHHcc----CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHH
Q 001307 37 EQRSEAELLFNLCKQQDPDSLTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (1103)
Q Consensus 37 ~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~----~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l 112 (1103)
..|-+|-+.|.+..+..|-.-++.+....++ +.++++|+.+..+|..++... .. .-...|..+++.+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----~~-----~~~~~R~~fF~~I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----DS-----SSGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----cc-----ccHHHHHHHHHHH
Confidence 3455555555543333443334555554443 667889999999999999875 11 1234566677777
Q ss_pred hhcchhhHHHHHHHHHHHHHhc--ccCCCCcchhHHHHHHhhcCC---------------------------CHhHHHHH
Q 001307 113 QLESAKSISKKLCDTVSELASN--ILPENGWPELLPFMFQCVSSD---------------------------SVKLQESA 163 (1103)
Q Consensus 113 ~~e~~~~vr~~~~~~i~~ia~~--~~~~~~w~~ll~~l~~~~~s~---------------------------~~~~r~~a 163 (1103)
.....+..-....+++..+-.+ ++. +--.++.|++.+++... +...-..-
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDID-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCch-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 7544443333334455544432 111 22355666666655311 01111122
Q ss_pred HHHHHHhhhhhhhhch-hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC
Q 001307 164 FLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (1103)
Q Consensus 164 l~~l~~l~~~~~~~l~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~ 242 (1103)
+..+..+++.-...+. ..+..++..+........+...-..++..+..++.+-.- + .+-++.++.+|+...+.
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~i---P---~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDI---P---SESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcC---C---hHHHHHHHHHHhhHhcc
Confidence 3333344443222222 245555555444433332444446788888888875311 1 23456778888877554
Q ss_pred CCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcC--C--CcchHHHHHHHHHHHHHHH
Q 001307 243 GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--E--SLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~--~--~~~~~~r~~a~~~l~~l~~ 303 (1103)
. +....+.+++..++..+.. ...+..+..++.+ . ..+..+-..|+.++..+.-
T Consensus 229 ~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 229 V--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLW 285 (464)
T ss_pred c--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHh
Confidence 3 5566777888888865421 2233344444421 1 1223344567888877665
No 224
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=34 Score=43.74 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhc
Q 001307 564 LRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 564 lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~ 643 (1103)
+-...+-|++.++-+-+ +.+.|+..++|.... ++....|-.++..+..+...+|+...+.+|+.+|.+-+.+
T Consensus 1520 v~~~li~~i~~~~~a~~-~d~~pl~~k~l~~tr-------ss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ 1591 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADK-DDLKPLNQKILKKTR-------SSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELM 1591 (1621)
T ss_pred HHHHHHHHHHhhccCCh-hhhHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHH
Confidence 44456677777777766 338888777765422 1222355567777888999999999999999999999887
No 225
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.04 E-value=1.8 Score=40.19 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
.-...+..|.+-+.++++.++..|+..+..++..+|..|...+ ..++..|..++..........+|.++++.+...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999999999999999887654 45778888877654433333389999999999998
Q ss_pred hhChhhhhhhHHHHHHH
Q 001307 578 AVGKDKFRDDAKQVMEV 594 (1103)
Q Consensus 578 ~~~~~~~~~~~~~i~~~ 594 (1103)
.++...-.+++.++++.
T Consensus 119 ~f~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYKR 135 (140)
T ss_dssp HTTTSTTGHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHH
Confidence 88544333444444443
No 226
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.67 E-value=1 Score=49.18 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----C-CcchHHHHHHH
Q 001307 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----Q-NPRVQAHAASA 484 (1103)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~-~~~v~~~a~~a 484 (1103)
....++..+...+ .+.+...|..|+..|.. +.-+.+++|.++..+.+. . +..+-...+..
T Consensus 175 Elq~yf~~It~a~----~~~~~~~r~~aL~sL~t----------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~ 240 (343)
T cd08050 175 ELQLYFEEITEAL----VGSNEEKRREALQSLRT----------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRM 240 (343)
T ss_pred HHHHHHHHHHHHH----hCCCHHHHHHHHHHhcc----------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 3334555555544 34677788887776633 233455666666555441 1 23333445555
Q ss_pred HHHHHhcCCcccccCchHHHHHHHHHHhhc----------CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHh
Q 001307 485 VLNFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1103)
Q Consensus 485 l~~l~~~~~~~~l~~~l~~ll~~L~~~l~~----------~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1103)
+..++.+-.- .+.+|+..+++.++.++-. ....+|+.|...++.++...+.......+.++..+.+.+.
T Consensus 241 v~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 241 VRALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 5566655443 3789999999999998732 2357999999999999988776554455566666665554
Q ss_pred h
Q 001307 555 N 555 (1103)
Q Consensus 555 ~ 555 (1103)
+
T Consensus 320 d 320 (343)
T cd08050 320 D 320 (343)
T ss_pred C
Confidence 3
No 227
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=92.61 E-value=16 Score=41.52 Aligned_cols=203 Identities=18% Similarity=0.205 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHH-HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHH
Q 001307 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~ 511 (1103)
+-|-.|..+||.++..++. .-...++. .|...|++ +...-|..++-.+..++.........+..+.+.+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~----~~~~~~~~~~L~~~L~S-~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPE----SSLQEIFQPLLLPYLNS-PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 4688999999999988753 33445554 57888888 666667788888888887765432222245666677777
Q ss_pred hhcCC-----------hhHHHHHHHHHHHHHHhhh---------------------hhhH-----hhHhhhhHHHHHHHh
Q 001307 512 LQNGK-----------QMVQEGALTALASVADSSQ---------------------EHFQ-----KYYDAVMPFLKAILV 554 (1103)
Q Consensus 512 l~~~~-----------~~v~~~al~al~~l~~~~~---------------------~~~~-----~~~~~i~~~l~~~l~ 554 (1103)
+.++. ..+|..+-..+..+..... ..|. .......+.+...+.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 66331 2344555444444443222 0111 111122222222221
Q ss_pred hcCC------------------------cccchhhhHHHHHHHHHHH-hhChhhhhhhHHHHHHHHHHHhcCCCCCCCch
Q 001307 555 NATD------------------------KSNRMLRAKSMECISLVGM-AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPT 609 (1103)
Q Consensus 555 ~~~~------------------------~~~~~lr~~a~~~l~~i~~-~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~ 609 (1103)
.... ......|..|.-+-+.++. .+ ++++.|.+..+|+.+.+ +.+..+
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KLnPiIrpLMdSIK~------Een~~L 329 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKLNPIIRPLMDSIKR------EENELL 329 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHhhc------cccHHH
Confidence 1100 0011112222212122221 22 36788888888877643 233445
Q ss_pred hhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCC
Q 001307 610 TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP 647 (1103)
Q Consensus 610 ~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~ 647 (1103)
......++..+...+-..-..=-+.|+..|+..+-.|+
T Consensus 330 Q~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 330 QQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence 55666677777777664333334678888888876553
No 228
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=8.3 Score=44.33 Aligned_cols=140 Identities=20% Similarity=0.283 Sum_probs=104.6
Q ss_pred HHhcCCChHHHHHHHHHHHH-hhhcCchH-------HH----HHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccC
Q 001307 29 SHLMSTSNEQRSEAELLFNL-CKQQDPDS-------LT----LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1103)
Q Consensus 29 ~~~~s~d~~~r~~Ae~~L~~-~~~~~p~~-------~~----~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l 96 (1103)
+++..+|.++|..|-..+-+ +--.+|+. .+ ..|..+| .++.|.+|.-|..-+-+.+... |.-+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~f----We~i 255 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCKITSKF----WEMI 255 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHH----HHHc
Confidence 45677899999888776544 33334543 11 2233333 3788999999999999988887 9999
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q 001307 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 173 (1103)
|+.....+...+...+..++...||-.....+-.++..-...+-...++|.+-..+.+..+.+|-++..++..+-..
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 99998888888999888888889999998888887664333345566778777788888889999998888766543
No 229
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=20 Score=39.39 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCC
Q 001307 395 HAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 474 (1103)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 474 (1103)
.+|+..+-.+++...-..+-.-..++..++++|.-++...-......|..++-...... .---..++..|++.+.. .+
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~-~h 358 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI-QH 358 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC-CC
Confidence 46777888888887766666667888999999988877766666666666664443322 22234677777777777 67
Q ss_pred cchHHHHHHHHHHHH
Q 001307 475 PRVQAHAASAVLNFS 489 (1103)
Q Consensus 475 ~~v~~~a~~al~~l~ 489 (1103)
+.++......+-++.
T Consensus 359 ~dL~~~tl~LlfNlS 373 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLS 373 (791)
T ss_pred HHHHHHHHHHhhhcc
Confidence 777777776666554
No 230
>PF05536 Neurochondrin: Neurochondrin
Probab=92.35 E-value=28 Score=40.90 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhh--HhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh-hChhhhhh--hHHHH
Q 001307 517 QMVQEGALTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA-VGKDKFRD--DAKQV 591 (1103)
Q Consensus 517 ~~v~~~al~al~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~-~~~~~~~~--~~~~i 591 (1103)
...+.-++..+++++. .+++ .|-+-.-+|.+..++.+..+ ..+-..+++|+..++.. -|.+.+.. .++.+
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHH
Confidence 4567778888888876 2333 35666788888888876443 34556688898888732 23333332 23333
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcc----cchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcc
Q 001307 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL----PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDS 667 (1103)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~ 667 (1103)
.+.+.+ .....+.++..|..++...+.+.. ..+..+++.+-+......
T Consensus 146 ~ei~~~--------~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-------------------- 197 (543)
T PF05536_consen 146 CEIIPN--------QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-------------------- 197 (543)
T ss_pred HHHHHh--------CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc--------------------
Confidence 333322 122455677777777776664332 223334444333332110
Q ss_pred cchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhh------ccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHH
Q 001307 668 METITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG------FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (1103)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~------~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 741 (1103)
-..|...|..++.+....+.. -..+...+...+...+.....+.-|..+..+...++
T Consensus 198 -----------------~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 198 -----------------GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred -----------------cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 113566778888887776311 112556666666677766667888999999988888
Q ss_pred HHHHHH
Q 001307 742 RSAKLA 747 (1103)
Q Consensus 742 ~~~~~~ 747 (1103)
...+..
T Consensus 261 ~~~G~~ 266 (543)
T PF05536_consen 261 DLLGPE 266 (543)
T ss_pred HHhChH
Confidence 876433
No 231
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.22 E-value=2.4 Score=40.24 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=75.8
Q ss_pred hhhhhhhHHHHHhhccCC-----------------CCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001307 455 NQFHPQVLPALAGAMDDF-----------------QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~-----------------~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~ 517 (1103)
.++++.++|.+.....-. .--.+|..|..++..+.+.+... + .+..+++.+...+.+ ..
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~-~--~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR-I--DISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS-S---HHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh-C--CHHHHHHHHHhhcCC-cH
Confidence 356678888887654331 12357999999999999988754 3 367778888888888 89
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 518 ~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
.++..+...+..++...+..+.+.++.+.+.+...++.
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998865
No 232
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.12 E-value=25 Score=39.81 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=125.8
Q ss_pred HhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH
Q 001307 150 QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1103)
Q Consensus 150 ~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~i 229 (1103)
+-.+.+...+|+....+...... +.|...+..++..++.+-+.+ .+-...++.+..++.+.... +++. .+++
T Consensus 18 ~k~Q~s~aGhrk~~a~l~~~~t~---~~f~~~flr~vn~IL~~Kk~~---si~dRil~fl~~f~~Y~~~~-dpeg-~~~V 89 (885)
T COG5218 18 NKIQQSSAGHRKSLAELMEMLTA---HEFSEEFLRVVNTILACKKNP---SIPDRILSFLKRFFEYDMPD-DPEG-EELV 89 (885)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHH---HhhHHHHHHHHHHhhccccCC---CcHHHHHHHHHHHHHhcCCC-Chhh-hHHH
Confidence 33343444555544444433322 223333444455555444443 33344667777777754221 2222 4566
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccc
Q 001307 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1103)
Q Consensus 230 p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 309 (1103)
..++..+...+.+++-.+|..+++.+.-+.....+.=......++..+..-+- |-++.+|..|+.++..+-+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~----- 162 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEM----- 162 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhc-----
Confidence 67777777778888999999999999887765443222233344444443331 34678899998887766552
Q ss_pred hhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC
Q 001307 310 GMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP 389 (1103)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~ 389 (1103)
...-.+++..++-.+++ .. | ....++.+ +-.+. . .....|.+++ ...+.
T Consensus 163 --~~neen~~~n~l~~~vq---nD---P-------------S~EVRr~a---llni~--v-dnsT~p~IlE----RarDv 211 (885)
T COG5218 163 --ELNEENRIVNLLKDIVQ---ND---P-------------SDEVRRLA---LLNIS--V-DNSTYPCILE----RARDV 211 (885)
T ss_pred --cCChHHHHHHHHHHHHh---cC---c-------------HHHHHHHH---HHHee--e-CCCcchhHHH----Hhhhh
Confidence 11112333333333332 11 0 00122222 11111 1 1344454444 33333
Q ss_pred Ch-HHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 001307 390 EW-QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIG 443 (1103)
Q Consensus 390 ~~-~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~ 443 (1103)
+- ..|..--.+|-.+...+...+.+++- .+-.++.|....|+.++..++.
T Consensus 212 ~~anRr~vY~r~Lp~iGd~~~lsi~kri~----l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 212 SGANRRMVYERCLPRIGDLKSLSIDKRIL----LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred hHHHHHHHHHHHhhhhcchhhccccceeh----hhhhcchhhhhhHHHHHHHHHH
Confidence 43 33444445555555544433333322 5667888999999999887774
No 233
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.92 Score=50.10 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=82.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHH
Q 001307 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1103)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~ 464 (1103)
.++.+-.+|+||..+||-++-.-+ ..++..++.| .+.|+.||...+.+||-.|...+... .-.++.
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~----a~diL~- 627 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV----ATDILE- 627 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH----HHHHHH-
Confidence 456788999999999997643211 2233333334 45689999999999999887665432 223333
Q ss_pred HHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC
Q 001307 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1103)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~ 516 (1103)
....| ++.-||..||.+++.+.-.+.++ +.|....+...+.+++.+.+
T Consensus 628 --~L~~D-~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 628 --ALMYD-TNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred --HHhhC-cHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhh
Confidence 34456 77789999999999999999876 77888999998888877554
No 234
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.05 E-value=1.9 Score=36.29 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=59.8
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
+......++|+ .+.||..++..+..++..-. .-...+|.++..+...++++++-+.-.|+++|..++..++..
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 34455667887 88999999999999998642 123446788888889999999999999999999999988764
Q ss_pred HH
Q 001307 266 LR 267 (1103)
Q Consensus 266 ~~ 267 (1103)
+.
T Consensus 78 vl 79 (92)
T PF10363_consen 78 VL 79 (92)
T ss_pred HH
Confidence 43
No 235
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.87 E-value=4.1 Score=43.30 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=113.1
Q ss_pred cCCChHHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001307 387 AAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1103)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~ 463 (1103)
...+|..--+++.-+....+ .......++-..+...+-++|+-.=| -|...|+.+...+.+.++++-..+.+.-..|
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 35678777666655555444 11112223344566777777775533 5888999999999998887655667777788
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
.++..+.. ....||......+..+.-.+++ .+.|.++.++..++..+++.+.++.+.++..+..+...++..
T Consensus 101 GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 101 GLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 88888877 6778888889999988888887 588999999999999999989999999999999999887765
No 236
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.22 E-value=26 Score=38.20 Aligned_cols=346 Identities=15% Similarity=0.186 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh
Q 001307 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 177 (1103)
++....+...+-+.|... . -|..+.+- +.+...+..|+.+++ ++...++-..+.+..+++.++......
T Consensus 80 dd~v~yvL~li~DmLs~d-~--sr~~lf~~----~a~~~k~~~~~~fl~----ll~r~d~~iv~~~~~Ils~la~~g~~~ 148 (442)
T KOG2759|consen 80 DDTVQYVLTLIDDMLSED-R--SRVDLFHD----YAHKLKRTEWLSFLN----LLNRQDTFIVEMSFRILSKLACFGNCK 148 (442)
T ss_pred HHHHHHHHHHHHHHHhhC-c--hHHHHHHH----HHHhhhccchHHHHH----HHhcCChHHHHHHHHHHHHHHHhcccc
Confidence 556666655555555532 2 12221111 112233346776655 444566666666888888888765443
Q ss_pred chh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHH--hhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001307 178 LTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ--DLLPLMMRTLTESLNNGNEATAQEALEL 254 (1103)
Q Consensus 178 l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~ip~ll~~l~~~l~~~~~~~~~~~~~~ 254 (1103)
+.. ...-....+...+++..+...+..+++||..++..-+ .+..|. +-+..++..+. -+..+.......+.|
T Consensus 149 ~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e---yR~~~v~adg~~~l~~~l~--s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 149 MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE---YRYAFVIADGVSLLIRILA--STKCGFQLQYQSIFC 223 (442)
T ss_pred ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc---hhheeeecCcchhhHHHHh--ccCcchhHHHHHHHH
Confidence 332 3444455666666664467778889999998876421 111110 00112222221 112244455555666
Q ss_pred HHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhh-hc--chhhHHHHHHHHHHh
Q 001307 255 LIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM-RK--LPQFINRLFAILMSM 329 (1103)
Q Consensus 255 l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~--~~~~~~~l~~~l~~~ 329 (1103)
+.-+.- ...+..++. .+++.+..++... ..+.+-..++..+..+++ +.|... ++ ...++..=++..++.
T Consensus 224 iWlLtF--n~~~ae~~~~~~li~~L~~Ivk~~-~KEKV~Rivlai~~Nll~---k~~~~~~~k~~~~~mv~~~v~k~l~~ 297 (442)
T KOG2759|consen 224 IWLLTF--NPHAAEKLKRFDLIQDLSDIVKES-TKEKVTRIVLAIFRNLLD---KGPDRETKKDIASQMVLCKVLKTLQS 297 (442)
T ss_pred HHHhhc--CHHHHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHhcCchHHHHH
Confidence 554432 122223222 4566666666432 334454455666666666 232110 10 011222222333333
Q ss_pred hcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC-cchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhh
Q 001307 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEG 407 (1103)
Q Consensus 330 l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~ 407 (1103)
|.+. .|. ||| ..+-+..|.+.+..+ .-+...=....+... .-.|..-+-.-.... ++
T Consensus 298 L~~r----kys-----DED---------L~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~---eN 356 (442)
T KOG2759|consen 298 LEER----KYS-----DED---------LVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR---EN 356 (442)
T ss_pred HHhc----CCC-----cHH---------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH---Hh
Confidence 3322 221 111 011122222221100 000001011111111 011211110000000 01
Q ss_pred cHHHHHHhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHhhhhhchhHH--hhhhhhhHHHHHhhccCCCCcchHHHHHHH
Q 001307 408 CAKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQ--NQFHPQVLPALAGAMDDFQNPRVQAHAASA 484 (1103)
Q Consensus 408 ~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~--~~~~~~il~~l~~~l~~~~~~~v~~~a~~a 484 (1103)
. +.+.+.=-+++..+...|+.. +|.+-..||.=+|++..+.+.... .+| ..=..+++.+++ ++++||-+|..|
T Consensus 357 a-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh-~d~~Vry~ALla 432 (442)
T KOG2759|consen 357 A-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNH-EDPEVRYHALLA 432 (442)
T ss_pred H-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcC-CCchHHHHHHHH
Confidence 1 111122235777777777755 488999999999999988764321 111 223456778888 999999999999
Q ss_pred HHHHHh
Q 001307 485 VLNFSE 490 (1103)
Q Consensus 485 l~~l~~ 490 (1103)
+..+..
T Consensus 433 vQ~lm~ 438 (442)
T KOG2759|consen 433 VQKLMV 438 (442)
T ss_pred HHHHHh
Confidence 988764
No 237
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.02 E-value=19 Score=36.47 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001307 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1103)
..|+.|++.|..+.. ..-+..+..++.+++...|..+..++|++-. +.-+|.+.+.|.+
T Consensus 171 ~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d 229 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLD 229 (289)
T ss_pred HHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHh
Confidence 455566665544311 2345667778888888888888888888642 2344555555544
Q ss_pred C-CCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 472 F-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 472 ~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
. .++-||..|..||+.+... ..++.|.+.+.++.+-+++.+..++...-.
T Consensus 230 ~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 2 4678888888888777432 234555566667777777777666665543
No 238
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.62 E-value=3.2 Score=38.20 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhccC--CCCcchHHHHHHHHHHHHhcC
Q 001307 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDD--FQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~il~~l~~~l~~--~~~~~v~~~a~~al~~l~~~~ 492 (1103)
-...+..|...+++++|.++..|+..|..+.+.+++.+...+.. ..+..+.+.+.. ..++.|+..+...+......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34577788888999999999999999999999998877555544 566666666654 246789999999999999887
Q ss_pred Ccc
Q 001307 493 TPE 495 (1103)
Q Consensus 493 ~~~ 495 (1103)
+.+
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 753
No 239
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.07 E-value=66 Score=41.07 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCCCchHHH-HHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcC
Q 001307 931 AAVYGLGVCAEFGGSVVKPLV-GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 991 (1103)
Q Consensus 931 ~a~~~lg~l~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 991 (1103)
|++.+|..|.-.++.+-.-.| ...+..|.+++..+ +......+++||-.++.+.|
T Consensus 549 NaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK------hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 549 NACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK------HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred cchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh------hhhhhhhHHHHHHHHhcCCc
Confidence 888888888766654333223 23567778888765 56777788888888887653
No 240
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.90 E-value=1.1e+02 Score=43.29 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=75.9
Q ss_pred HhhCCC-CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHccchH
Q 001307 191 NCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL-----NNGNEATAQEALELLIELAGTEPR 264 (1103)
Q Consensus 191 ~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l-----~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1103)
+.|.|. ...+.|...+.-+...++..........+..++|.+++.+...- .++..+.|..+++.+..+.. .+
T Consensus 12 ~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~--~e 89 (3550)
T KOG0889|consen 12 RRLVDVNLPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPH--NE 89 (3550)
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhccc--HH
Confidence 344443 34567777777777777665443333346678888888776432 23445678888888887764 47
Q ss_pred HHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001307 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1103)
Q Consensus 265 ~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1103)
.+++|...++..+++++.+. +++....|+..+..+.+.
T Consensus 90 ~~~~~~~~~~~~~~~vl~~d--Neen~~l~lkii~~l~r~ 127 (3550)
T KOG0889|consen 90 VFKPFSQELLKVLMRVLTND--NEENAILCLKIITDLFRQ 127 (3550)
T ss_pred HHHHHHHHHHHHHHHHHhcc--cchhhhhHHHHHHHHHHh
Confidence 79999999999999999653 566667788888888773
No 241
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=89.90 E-value=56 Score=41.69 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
..+..+++.|++.+--|...+|-+|-.+....+.+-+--|-...++.+...+.+ ++..+...+..+|.+++..-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence 456777888888888888888888877776554432222345667778888888 78888888999999988654
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.23 E-value=33 Score=41.67 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001307 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1103)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1103)
+.+.+...+..+.... +...+..++++|+++-.. ..++.+...+.... .....+|..|+.+|..++.
T Consensus 487 ~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhh
Confidence 4455555566666665 778889999999987421 22333333222110 1256788999999998887
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001307 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1103)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 299 (1103)
.++....+. ++.+..+...+.++|..|+..+.
T Consensus 554 ~~~~~v~~~-------l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 554 HCPEKVREI-------LLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp T-HHHHHHH-------HHHHHH-TTS-HHHHHHHHHHHH
T ss_pred cCcHHHHHH-------HHHHhcCCCCChhHHHHHHHHHH
Confidence 777655553 34555566677889999976554
No 243
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.19 E-value=8.3 Score=35.87 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
.-...+..|.+-+.+.++.++-.|+..+..++..+|..|...+ ..++..|..++... .+..+|.++++.+...+.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHH
Confidence 3456778888888889999999999999999999999886544 45777777777553 456789999999999988
Q ss_pred hhChh
Q 001307 578 AVGKD 582 (1103)
Q Consensus 578 ~~~~~ 582 (1103)
+++.+
T Consensus 111 ~f~~~ 115 (144)
T cd03568 111 EFKND 115 (144)
T ss_pred HhCCC
Confidence 77633
No 244
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.04 E-value=4.7 Score=37.52 Aligned_cols=78 Identities=13% Similarity=0.303 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
...+..|...+.+.+|.|+..|+..|..+.+.++..+.... ...++..+.+.+.+..++.|+..+...+....+.++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 46777888889999999999999999999999988764332 3456666777666645778999999999999988874
No 245
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.95 E-value=41 Score=37.26 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=96.1
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh--c-hhhHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHH
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--L-TPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~--l-~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (1103)
-.|..+.+.+...+-+++..+|.+|++++..+....... + .-+++. ++..+|..+ ....-|..|++.+..++.
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 468888888887666666899999999999887653221 1 112222 333444433 245568999999999998
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH--hHHHHHHHHHHhhcCCCcchHHHH
Q 001307 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRH 292 (1103)
Q Consensus 215 ~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~r~ 292 (1103)
.-.. .+ .+=..+++.+....++.+...+..+++++.+++-..|+.+.. -+..++..+.. . .-++..
T Consensus 98 ~~~~---~~---~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~--~~~~~~ 165 (371)
T PF14664_consen 98 IKKG---PK---EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----G--SFSISE 165 (371)
T ss_pred hcCC---cc---cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----c--cHhHHH
Confidence 6321 11 112267888888888888889999999999999888876532 23344444332 1 112444
Q ss_pred HHHHHHHHHHH
Q 001307 293 LAIEFVITLAE 303 (1103)
Q Consensus 293 ~a~~~l~~l~~ 303 (1103)
..+..+..+..
T Consensus 166 ~l~~~lL~lLd 176 (371)
T PF14664_consen 166 SLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHHHhC
Confidence 55555555655
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.95 E-value=3.7 Score=38.10 Aligned_cols=79 Identities=9% Similarity=0.188 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1103)
...+..|...+.+++|.++..|+..|..+.+.++..+...+ -..++..+.+.+.+..++.|+..+...+......++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35667788889999999999999999999999887664333 34566666666654367899999999999999888744
No 247
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.88 E-value=8.6 Score=35.31 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
.-...+..|.+-+.++++.++-.|+..+..++..+|..|...+ ..++..|...+....+ ...+|.++++.+...+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 3456677888888899999999999999999999999886544 4577888877765332 22389999999999988
Q ss_pred hhC
Q 001307 578 AVG 580 (1103)
Q Consensus 578 ~~~ 580 (1103)
+++
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 875
No 248
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.74 E-value=0.76 Score=31.88 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhh
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (1103)
..+|.+...++++++.|+..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999986
No 249
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=88.54 E-value=47 Score=39.35 Aligned_cols=65 Identities=26% Similarity=0.242 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc---------hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccC
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP---------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p---------~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~ 88 (1103)
-++.+.+.-+.+.++.++..|-.+++.+...+- .+ ++-|+.++. +.+.++++.|+=.|||++...
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlgg-I~kLv~Ll~-~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGG-IPKLVALLD-HRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhcc-HHHHHHHhc-CCcHHHHHHHHHHHHhhhccc
Confidence 367888888889999988888888877554321 12 455666554 788999999999999999775
No 250
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.51 E-value=4.7 Score=37.94 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH----------------HHHHhHHHHHHHH
Q 001307 360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK----------------VMVKNLEQVLSMV 423 (1103)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----------------~~~~~l~~i~~~l 423 (1103)
.++..++...-+ .-.|.+++.+.+.+++ +.......+..|..+.+...+ .+....+.+++.+
T Consensus 10 ~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l 87 (148)
T PF08389_consen 10 QVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEIL 87 (148)
T ss_dssp HHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443321 2233444444444443 355555666666655543321 2333455666666
Q ss_pred HhcCCCCC----hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHH
Q 001307 424 LNSFRDPH----PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1103)
Q Consensus 424 ~~~l~d~~----~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1103)
...+.... ..+...++.+++.+..+.+.... .-..+++.+++.+++ +..+..|+.+|
T Consensus 88 ~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i--~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 88 SQILSQSSSEANEELVKAALKCLKSWISWIPIELI--INSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH--HSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh--ccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 66654332 78899999999999998776442 224599999999966 45688888775
No 251
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=88.20 E-value=41 Score=38.30 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHH-HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhcCCCCC--
Q 001307 356 SVGQECLDRLAIALGGNTIVPVAS-EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPH-- 431 (1103)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~-~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~-- 431 (1103)
-.|..+|+.+...++ ..-...+. +.+..++++..-..|..|...+...+......-. +..+.+.+.+...|.++.
T Consensus 105 i~aA~ALG~l~~~~~-~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~~ 183 (441)
T PF12054_consen 105 IAAAKALGLLLSYWP-ESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEPP 183 (441)
T ss_pred HHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCCC
Confidence 357889999999986 44444444 4688899999889999999999888776553111 112344455555555332
Q ss_pred ---------hhHHHHHHHHHHHhhhhhc--------------------h-----hHHhhhhhhhHHHHHhhccCCCC---
Q 001307 432 ---------PRVRWAAINAIGQLSTDLG--------------------P-----DLQNQFHPQVLPALAGAMDDFQN--- 474 (1103)
Q Consensus 432 ---------~~vr~~a~~~L~~l~~~~~--------------------~-----~~~~~~~~~il~~l~~~l~~~~~--- 474 (1103)
.++|..|...+..+...-. + +.........++.+.+.+.....
T Consensus 184 ~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~a 263 (441)
T PF12054_consen 184 YYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLSA 263 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccchH
Confidence 2456666666555554322 0 00022333344445555543110
Q ss_pred --------------------------cchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc-CChhHHHHHHHHH
Q 001307 475 --------------------------PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN-GKQMVQEGALTAL 527 (1103)
Q Consensus 475 --------------------------~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~-~~~~v~~~al~al 527 (1103)
.+|+..++.++..+ . .+.+-+.+++..|+..++. .+..++..+..++
T Consensus 264 ~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l-~-----~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~sl 337 (441)
T PF12054_consen 264 LQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVAL-G-----GLPKKLNPIIRPLMDSIKREENELLQQRSAESL 337 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----cCCCCccHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 11122222222222 1 2334456666666666654 4678899999999
Q ss_pred HHHHHhhh
Q 001307 528 ASVADSSQ 535 (1103)
Q Consensus 528 ~~l~~~~~ 535 (1103)
+.++..+.
T Consensus 338 A~Li~~~~ 345 (441)
T PF12054_consen 338 ARLIQLCV 345 (441)
T ss_pred HHHHHHHh
Confidence 99887654
No 252
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.73 E-value=16 Score=39.63 Aligned_cols=124 Identities=12% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCHhHHHHHHHHHHHhhhhhhhh---chhhH----HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHH
Q 001307 154 SDSVKLQESAFLIFAQLSQYIGDT---LTPHL----KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (1103)
Q Consensus 154 s~~~~~r~~al~~l~~l~~~~~~~---l~~~~----~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 226 (1103)
+++....+..+.++..++...+.. +.... ...+..|.+.+..+ +..++..|+..+..++..-+.... ....
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~-~~~~ 145 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSE-KLVK 145 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--H-HHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCcccc-chHH
Confidence 566677778888888877765421 11111 12455566677776 999999999999999987543222 1124
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch--HHHHHhHHHHHHHHHHhh
Q 001307 227 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIA 281 (1103)
Q Consensus 227 ~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~~ 281 (1103)
+.++.+++.+...+++++.+....++.++..++.... ..|.. ...++.+..++
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 6677788877765554455566788999999986532 22211 34455555544
No 253
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=87.16 E-value=40 Score=40.56 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 001307 689 ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFI 768 (1103)
Q Consensus 689 ~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i 768 (1103)
..|+++...+..+|.+.+-.|++.++..+.++++.. +++.+..+..++..++... ...|.+... ++.+
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf~~F~~i~----------~d~~sy~~~-yd~F 141 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN-NDEMQILGTNSFVKFANIE----------EDGPSYHRN-YDFF 141 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCceeeehhhHHHHHHhhc----------ccCchhhhh-hHHH
Confidence 356778888889999988888899999999999876 7888888888877776542 112333332 5666
Q ss_pred HHHHHHHHccCCcH----HHHHHHHHHHHHHHHHh-----CCCC-CHHHHHHHHHHHHHHHHH
Q 001307 769 IPALVEALHKEPDT----EICASMLDSLNECIQIS-----GPLL-DEGQVRSIVDEIKQVITA 821 (1103)
Q Consensus 769 ~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~-----g~~~-~~~~~~~~~~~l~~~l~~ 821 (1103)
++++.....+..+. .++.+.+.+|..++... .... ...|++.+++.+.-.+..
T Consensus 142 i~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 142 ISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred HHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcc
Confidence 77766665554333 34445566666555432 1111 233467777766644443
No 254
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=2.7 Score=40.51 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=72.4
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh---h
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 534 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~---~ 534 (1103)
+...+|.++.+|.+ .+..-+--|-.-+..++...+.. +.|.++.++..|-..+...+.++...++.+|..+... +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g~k-ilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGGEK-ILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcccc-cccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 44677888888776 33344555666667777766644 6799999999999999999999999999998887654 5
Q ss_pred hhhhHhhHhhhhHHHHHH
Q 001307 535 QEHFQKYYDAVMPFLKAI 552 (1103)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~ 552 (1103)
|..+.|||.+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 678999999999987654
No 255
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.75 E-value=71 Score=40.54 Aligned_cols=245 Identities=16% Similarity=0.234 Sum_probs=127.0
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHc
Q 001307 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG---NEATAQEALELLIELAG 260 (1103)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~---~~~~~~~~~~~l~~l~~ 260 (1103)
.+++.+.-........+||...++++.++++... ...+.+ ++.+++.+......+ .-+..+.++.+|.-+..
T Consensus 841 ~~l~sl~v~~~s~~~~evr~~sl~~l~silet~g----e~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss 915 (1610)
T KOG1848|consen 841 MLLPSLEVSDNSSRGVEVRISSLEALVSILETVG----EHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS 915 (1610)
T ss_pred HHHHHHHHHHhcCccceeeHHHHHHHHHHHhccc----hhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh
Confidence 3444433333333378899999999999988642 222344 778888877666554 33455667777765554
Q ss_pred cchHHH-HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc---cchh--h---------h--cchhhH-HHH
Q 001307 261 TEPRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER---APGM--M---------R--KLPQFI-NRL 322 (1103)
Q Consensus 261 ~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~--~---------~--~~~~~~-~~l 322 (1103)
..-..+ ...+..+++.+......+ .|.++...|+..+-++...-.+ .-+- . . +....+ +.+
T Consensus 916 DfLqSLp~sci~~lidtl~~fs~Qk-tdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~l 994 (1610)
T KOG1848|consen 916 DFLQSLPTSCILDLIDTLLVFSRQK-TDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVL 994 (1610)
T ss_pred cchhcCChHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHH
Confidence 321111 223344555555444332 3556666676665555442100 0000 0 0 000011 122
Q ss_pred HHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHH----cCCCcchHHHHHHHHHhhcC------CChH
Q 001307 323 FAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA----LGGNTIVPVASEQLPAYLAA------PEWQ 392 (1103)
Q Consensus 323 ~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~~------~~~~ 392 (1103)
.-.++..+.+..+|+ -.+.++-|.+.+-++... +|+...-..+...+..++.+ .+|.
T Consensus 995 wi~ll~~L~~~~~ds-------------r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewn 1061 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDS-------------RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWN 1061 (1610)
T ss_pred HHHHHHHHHHHhccc-------------hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhc
Confidence 223333333332221 123455566666555443 33322223334444444431 2354
Q ss_pred HH-------HHHHHHHHHHHhhcHHHHHH---------hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhh
Q 001307 393 KH-------HAALIALAQIAEGCAKVMVK---------NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1103)
Q Consensus 393 ~r-------~aal~~l~~l~~~~~~~~~~---------~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~ 447 (1103)
-+ +..+..++.+++-.++.++. ....++..+.....|.++.+..+|..++..+..
T Consensus 1062 gkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1062 GKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred chhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 33 34677788887766654432 234566777777889999999999888876553
No 256
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=86.64 E-value=5.7 Score=33.11 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~ 256 (1103)
-..++..|...+.+..+.+||...++|+..++... ......-|+.+++++.....+++++....|++++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-----~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSR-----GENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-----HHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44566667776555558999999999999999863 23456668899999999888888888888887764
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.63 E-value=15 Score=34.21 Aligned_cols=80 Identities=24% Similarity=0.187 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
.-...+..|.+-+.++++.++-.|+..+..++..+|..|...+ ..++..|...+.+ .....+|.++++.+...+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHH
Confidence 3456778888888889999999999999999999998876533 4577777777654 2345688999999999988
Q ss_pred hhChh
Q 001307 578 AVGKD 582 (1103)
Q Consensus 578 ~~~~~ 582 (1103)
+++.+
T Consensus 115 ~f~~~ 119 (142)
T cd03569 115 AFRNK 119 (142)
T ss_pred HhCCC
Confidence 77633
No 258
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.47 E-value=6.9 Score=35.93 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcc-hHHHHHHHHHHHHhcCCc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~ 494 (1103)
...+..|...+.+++|.++..|+..|..+.+.+++.+...+ ...++..+.+.+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 35667788889999999999999999999999988774444 3346777777776633333 999999999999888754
No 259
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=86.41 E-value=4.6 Score=35.00 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001307 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1103)
+.+.++++.++..+..++.+-.+.||..+...|.-+.+.+++.....+...+++..+..+..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 46778999999999999999999999999999999999999884478888999999888876
No 260
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.26 E-value=20 Score=35.35 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccC
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~ 88 (1103)
=+.++|+...+++..+|..|-+.+....++ +|..+++.|..+. +++++.+|..|..+++....++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999887665 8988889888854 5799999999999999988775
No 261
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.26 E-value=61 Score=41.99 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=98.1
Q ss_pred HhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhh-hhhhch---hhHHHHHH
Q 001307 112 IQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLT---PHLKHLHA 187 (1103)
Q Consensus 112 l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~~~l~---~~~~~l~~ 187 (1103)
.....+..||..+.+|++.-.+ .+|..++..+-......+...-+.++..+..+... +...+. ..+...++
T Consensus 1045 m~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1045 MKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred hhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 3334677899999999883222 58999999888888888877778888877755543 222222 12444455
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc---ch--------Hh-HHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001307 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSS---AD--------RD-RFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1103)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~--------~~-~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l 255 (1103)
.|....++...+.....+++.+..++..+... .. .+ ....++|.+... .........++|..+++.+
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHH
Confidence 55555444323444455555555554443322 00 01 112345554443 3333356788999999999
Q ss_pred HHHHccchHHHHHhH-HHHHHHHHHhhc
Q 001307 256 IELAGTEPRFLRRQL-VDVVGSMLQIAE 282 (1103)
Q Consensus 256 ~~l~~~~~~~~~~~~-~~l~~~l~~~~~ 282 (1103)
-.+...++..|.+.. ..++..++.+.+
T Consensus 1199 F~il~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHHheeeccc
Confidence 999888877665433 455565555553
No 262
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.80 E-value=13 Score=34.20 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH-h-hhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-D-AVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~-~-~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
--...+..|.+-+.++++.++..|+..+..++..+|..|...+ . .++.-+..++.+. ...+..+|.++++.+...+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 3456677888888899999999999999999999998886433 3 5666677766543 22355789999999999998
Q ss_pred hhCh
Q 001307 578 AVGK 581 (1103)
Q Consensus 578 ~~~~ 581 (1103)
+++.
T Consensus 113 ~f~~ 116 (133)
T cd03561 113 SFGG 116 (133)
T ss_pred HhcC
Confidence 8874
No 263
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.77 E-value=88 Score=37.52 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC
Q 001307 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1103)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~ 197 (1103)
...|+..-++++.. +-+.-+.++.+++.+..-... .+..++..+......--.+.+..+.+++..--.. .
T Consensus 340 ~~~r~~~~Dal~~~--------GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~-~ 409 (574)
T smart00638 340 KKARRIFLDAVAQA--------GTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQ-K 409 (574)
T ss_pred HHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccc-c
Confidence 45566555555433 335667777777777643222 2333344443332211122344444444322222 2
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcch---HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSAD---RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVV 274 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 274 (1103)
...++..|+-+++.++...-.... ......++|.+.+.+..+.+..+.+.+..++.+|+.+.... .+
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i 479 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SI 479 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HH
Confidence 678999999999999874321111 12235677788888877776667777777788887665421 11
Q ss_pred HHHHHhh-cCCCcchHHHHHHHHHHHHHHH
Q 001307 275 GSMLQIA-EAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 275 ~~l~~~~-~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
..+...+ .+...+..+|..|+..+..++.
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~ 509 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAK 509 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1111111 2344567899999999988776
No 264
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=1.4e+02 Score=39.60 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC---CHhHHHHHHHHHHHhhhhhhhhchh
Q 001307 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 104 ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~---~~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
..+++.+.+..-..+.+|+.++.+|+.+... +..-.-..++..+...+++. ++..+.+++.+++...+..+.....
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~ 130 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGR 130 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcc
Confidence 3456677777767889999999999988774 21111122333333334333 3456677788899999988887666
Q ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001307 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1103)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1103)
.+...+++|.+..+.. ..-+|......+.+....+...... ....-.+.......+.+....++..+.+|+..+..
T Consensus 131 ~~edt~~if~~~~k~n-~s~~~~~i~~~l~~~~~~~g~~s~~---~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~ 206 (2067)
T KOG1822|consen 131 GLEDTVQIFTKLVKTN-ESFVRQEIMITLHNALKGMGGTSAA---TATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSN 206 (2067)
T ss_pred hHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHh
Confidence 6888889999888886 6777877777777776655321111 11122344444444445555688888898888776
Q ss_pred cchHHH-HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001307 261 TEPRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1103)
Q Consensus 261 ~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1103)
..+..+ ..-+.....+++.... .....+|..-.+++..+...
T Consensus 207 ~~~~~~~~Sele~~~s~cfk~~~--~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 207 LGGPGLGTSELETLASYCFKGIE--ISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred hcCccccchhhhhhcceeeeeec--cchHHHHHHHHHHHHHHHhc
Confidence 555444 3334455555554332 23456777667777777664
No 265
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.49 E-value=13 Score=34.35 Aligned_cols=88 Identities=8% Similarity=0.184 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHHHhhccC-----CCCcchHHHHHHHHHHHHh
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~ 490 (1103)
...+..|...+++++|.+...|+..|..+.+.+++.+..... ..++..+++.+.. ..++.|+..+...+....+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 356777888899999999999999999999999887744433 4556666666642 2467899999999999988
Q ss_pred cCCcccccCchHHHHHH
Q 001307 491 NCTPEILTPYLDGIVSK 507 (1103)
Q Consensus 491 ~~~~~~l~~~l~~ll~~ 507 (1103)
.++. .|.+......
T Consensus 117 ~f~~---~p~~~~~Y~~ 130 (139)
T cd03567 117 ELPH---EPKIKEAYDM 130 (139)
T ss_pred Hhcc---cchHHHHHHH
Confidence 8763 2444444433
No 266
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.69 E-value=70 Score=38.80 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHHHhcccCCC---------CccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC
Q 001307 69 PHPEARAMAAVLLRKLLTRDDS---------FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN 139 (1103)
Q Consensus 69 ~~~~~R~~a~~~L~~~i~~~~~---------~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~ 139 (1103)
.++.+|..|.+.+..++.+.-. .....+.......+...+-..... .+..-+.....+||.+.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~LkaLgN~g------- 518 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR-GDEEEKIVYLKALGNLG------- 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHT-------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc-cCHHHHHHHHHHhhccC-------
Confidence 4466777777776666654200 112334444445555444433443 45566666667777653
Q ss_pred CcchhHHHHHHhhcCC---CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 001307 140 GWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s~---~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1103)
-|..++.+...+.+. ....|..|+.+|..+....++.. .+.+++++.+. ..+.++|.+|+..+..
T Consensus 519 -~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v---~~~l~~I~~n~---~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 519 -HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV---REILLPIFMNT---TEDPEVRIAAYLILMR 586 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH---HHHHHHHHH-T---TS-HHHHHHHHHHHHH
T ss_pred -CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH---HHHHHHHhcCC---CCChhHHHHHHHHHHh
Confidence 356778887777765 45788888888887766655442 23344444432 2367899999766543
No 267
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.50 E-value=1.5e+02 Score=39.24 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHH
Q 001307 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1103)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1103)
+--..+.++.+....|+..+.-.. .-+. + ....|...+++...+.+|++.++.+.+.+.. |..++...
T Consensus 23 p~~~~e~l~~l~~~l~~~~ke~~l---~tQ~-~---~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-----gd~f~~~~ 90 (2067)
T KOG1822|consen 23 PVFCLEWLRYLERNLNEEQKEDLL---VTQL-K---LEQQLISRLTNGAGPPTRKLISVAIARLISN-----GDSFSLYS 90 (2067)
T ss_pred cHHHHHHHHHHHhcCCcchhHHHH---HHhH-H---HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-----cchhhHHH
Confidence 334555566666666655443222 1111 1 2366778888888999999999999998875 66555433
Q ss_pred HHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhcccCC--CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh
Q 001307 101 QSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1103)
Q Consensus 101 ~~~ik~~ll~~l~~e--~~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (1103)
.-. .+-..+.+. .++.-+..+..+++....+..+. ....+.+..+..+.+..+.-.|...+..+...++..+.
T Consensus 91 ~l~---~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~ 167 (2067)
T KOG1822|consen 91 RLN---SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGG 167 (2067)
T ss_pred HHH---HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 222 222333332 23333344445666665544332 24577888888888877777777777778777777653
Q ss_pred h--chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 177 T--LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 177 ~--l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
. ...+...+.-.....+.+. +..||.++.+|+..+...
T Consensus 168 ~s~~~~~~k~i~l~~k~~lld~-s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 168 TSAATATHKAIRLIAKNSLLDR-SFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred chHHHHHHHHHHHHHhhhhhhh-hHHHHHHhHHHHHHHHhh
Confidence 2 2223444555556666675 777999999998877653
No 268
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.13 E-value=1e+02 Score=36.93 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001307 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1103)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~ 454 (1103)
.+.+...+....+..+...+...+.+||.+.... -+..+.+.+. +-....+.+|.+|+++|.+++...+..+
T Consensus 444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v- 515 (574)
T smart00638 444 LKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV- 515 (574)
T ss_pred HHHHHHHHHHHHhcCCchheeeHHHhhhccCChh------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH-
Confidence 3334444444444456666788888888764321 1112222222 2234567899999999998887655433
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHH
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1103)
-+.+++.+... ..++++|.+|+..|-
T Consensus 516 ---~~~l~~i~~n~---~e~~EvRiaA~~~lm 541 (574)
T smart00638 516 ---QEVLLPIYLNR---AEPPEVRMAAVLVLM 541 (574)
T ss_pred ---HHHHHHHHcCC---CCChHHHHHHHHHHH
Confidence 22333333221 146789988887753
No 269
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=83.87 E-value=1.7 Score=30.14 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=27.3
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
...+|.|++.+.+ +++.++..|+++|.+++
T Consensus 11 ~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKS-PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTS-SSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 4688999999998 99999999999999986
No 270
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.58 E-value=3.7 Score=36.21 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHhcC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCCcchHHHHHHHHHHHHh
Q 001307 419 VLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 419 i~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
++..+...| .+.++.+...||.=||.++...+..- ..+ -..=..+++.+++ +++.||..|..++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 444444455 33477788889999999998875422 222 2344567788888 899999999999988753
No 271
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.46 E-value=20 Score=33.28 Aligned_cols=80 Identities=13% Similarity=0.269 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcc---hHHHHHHHHHHHHh
Q 001307 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSE 490 (1103)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~---v~~~a~~al~~l~~ 490 (1103)
.-...+..|...|.+++|.++..|+..|..+.+.+++.+...+ -..++..+.+.+.+.+... |+..+...+.....
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999988774443 2345666666555422222 89999999999998
Q ss_pred cCCc
Q 001307 491 NCTP 494 (1103)
Q Consensus 491 ~~~~ 494 (1103)
.++.
T Consensus 119 ~f~~ 122 (140)
T PF00790_consen 119 AFKS 122 (140)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 8854
No 272
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.46 E-value=30 Score=34.71 Aligned_cols=161 Identities=18% Similarity=0.150 Sum_probs=95.1
Q ss_pred CCccCchhHHHHHHH-Hh---CCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH---------HHHHHHHHHcc
Q 001307 1 MAAESTHLQQSQLAV-IL---GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---------LTLKLAHLLQR 67 (1103)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~---~~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~---------~~~~L~~il~~ 67 (1103)
||.-|.|....+-.. -. +.+.+.+.++...+.+| ..|..|-.+|-+-.+..|+- ....|++-..+
T Consensus 1 M~~~p~p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEiva 78 (293)
T KOG3036|consen 1 MANLPSPAMSKQQQTPSPGSNASNNDKAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVA 78 (293)
T ss_pred CCCCCCCccchhccCCCCCcccccccchhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHh
Confidence 777776655544332 11 12344577888877755 77888888776544422321 12233332221
Q ss_pred ----------CCChhHHHHHHHHHHHhcccCCCCccccCCHHHH-HHHHHH----HHHHHh----hcchhhHHHHHHHHH
Q 001307 68 ----------SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ-SSLKSM----LLQSIQ----LESAKSISKKLCDTV 128 (1103)
Q Consensus 68 ----------~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~-~~ik~~----ll~~l~----~e~~~~vr~~~~~~i 128 (1103)
++....|-.-+..|-+.+..+ ++++ ..++.+ +...|. +-+...+|-..-.+|
T Consensus 79 iYp~l~p~~l~~~qsnRVcnaL~LlQcvASH---------pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVI 149 (293)
T KOG3036|consen 79 IYPSLSPPTLTPAQSNRVCNALALLQCVASH---------PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 149 (293)
T ss_pred cccccCCCCCCccccchHHHHHHHHHHHhcC---------cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHH
Confidence 233445777777777777665 2222 222222 112222 224556788877888
Q ss_pred HHHHhcccCC----CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 001307 129 SELASNILPE----NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 129 ~~ia~~~~~~----~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (1103)
+.+++.+-.. -.|.+++|.....+.++++..+..|..+++.|.-
T Consensus 150 gaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 150 GALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred HHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 8888753211 1578899999999998888888888888888764
No 273
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=81.39 E-value=85 Score=33.99 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHH
Q 001307 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1103)
Q Consensus 685 ~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 742 (1103)
..+|..|.+.+..+.++.+.. ....+..=+.++++. +-+||..|+.-++.++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~l----a~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSL----ADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCK 90 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchh----hhHHHHhhhcccccc-chhhHHHHHhccchhcc
Confidence 567889999999998865432 344455555666653 67899999999988875
No 274
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=81.27 E-value=1.5e+02 Score=36.73 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhc----chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhh----h
Q 001307 103 SLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY----I 174 (1103)
Q Consensus 103 ~ik~~ll~~l~~e----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~----~ 174 (1103)
.+.-.+.+.|..+ .++.+|...-.++..+.... +...+.+++|-+..++-++++..|.-|...+..+... .
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~-~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t 155 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKK-PLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSIT 155 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccC-CccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCc
Confidence 4555667777653 24456666665665554321 1122378899999999999999999999999987653 2
Q ss_pred hhhchh-hHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhcCCcchHhHHHh--hHHHHHHHHHHHHhCCCHHHHHH
Q 001307 175 GDTLTP-HLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQD--LLPLMMRTLTESLNNGNEATAQE 250 (1103)
Q Consensus 175 ~~~l~~-~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~ip~ll~~l~~~l~~~~~~~~~~ 250 (1103)
.+++.. ..+.+...+... +.. .++..-..-=..+..++..++...-...+.. +-| +...+...+.....+....
T Consensus 156 ~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~ 233 (727)
T PF12726_consen 156 DEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPI 233 (727)
T ss_pred hhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHH
Confidence 333432 223333333333 221 1222111122334444554432222222222 334 6667777776654556677
Q ss_pred HHHHHHHHHccchHHHHH
Q 001307 251 ALELLIELAGTEPRFLRR 268 (1103)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~ 268 (1103)
.+++|..+.+..+..|-.
T Consensus 234 lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 234 LLRCLSILLEKLGSDFWD 251 (727)
T ss_pred HHHHHHHHHHhCHHHHhc
Confidence 888999999888776644
No 275
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=81.21 E-value=21 Score=43.08 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHH-HHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH
Q 001307 857 FDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE 930 (1103)
Q Consensus 857 ~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 930 (1103)
|-.+..+|+.+++..+.......+. +++.++++|..+.+...-..|+.+|.-++-..+..+.+|++.++.++..
T Consensus 85 Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 85 RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGR 159 (668)
T ss_pred HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 5568899999999988776666664 8899999998888888999999999999999998888999999988876
No 276
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=81.19 E-value=47 Score=40.16 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001307 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1103)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1103)
++-..++..+...+..+ ..|..++..|+.++..-+.-...-.-..+++.+++.|. .+.+..+...|+.+|..++
T Consensus 66 P~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~---~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQ---FDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ccHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHh---hcccHHHHHHHHHHHHHHh
Confidence 35567777777778765 78999999999999864321100001133444444332 3567778889999999999
Q ss_pred ccchHHHHHhHHHHHHHHHHhh
Q 001307 260 GTEPRFLRRQLVDVVGSMLQIA 281 (1103)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~ 281 (1103)
-..|..+.++++++|..+..++
T Consensus 140 P~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999887776
No 277
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=80.68 E-value=1.4e+02 Score=36.21 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=86.8
Q ss_pred cCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcccCCC------
Q 001307 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPEN------ 139 (1103)
Q Consensus 67 ~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~~~------ 139 (1103)
.+++|..+..|-.-||+ |++- ...-..|.+...+. .+-.+|-.+.--+..-..+.+.+.
T Consensus 14 qs~~p~s~k~AE~~Lrq---------we~q-----~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~ 79 (947)
T COG5657 14 QSPDPPSVKCAEERLRQ---------WEKQ-----HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSIL 79 (947)
T ss_pred cCCCCchHhhHHHHHHh---------hhcc-----ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCC
Confidence 47889999999999998 7542 22444555555542 344455544333332222222110
Q ss_pred --CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcC
Q 001307 140 --GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1103)
Q Consensus 140 --~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1103)
.-.-+-..++.++-+.+......-..+.+.++... +....+++++-+...+++. +..+-...+.++..++....
T Consensus 80 p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~D---fPdeWpTL~~DL~~~Ls~~-D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 80 PDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLD---FPDEWPTLVPDLLSLLSEK-DMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred CccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhcc---CcccchhHHHHHHhhhccc-chHHHHHHHHHHHHHHHHHh
Confidence 00012234455554444333333345555555542 2235788899999999885 66666667777777666543
Q ss_pred C-cchHhHHHhhHHHHHHHHHHHHh
Q 001307 218 S-SADRDRFQDLLPLMMRTLTESLN 241 (1103)
Q Consensus 218 ~-~~~~~~~~~~ip~ll~~l~~~l~ 241 (1103)
. ....+.|..+.|.+...+...+.
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl~ 180 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFLF 180 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHH
Confidence 1 12345677777877766665543
No 278
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=80.40 E-value=8.4 Score=32.09 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC--CCCcchhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001307 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~--~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~ 169 (1103)
.+..+..-+...+.+.++..+|..+.+++..+...... ..+|+.++..+-....+++...-..|+.++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 44555555666666667889999999999888764322 25899999999999988888777788877654
No 279
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=79.99 E-value=1.6e+02 Score=36.35 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhhhhhhhh---chh--hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001307 158 KLQESAFLIFAQLSQYIGDT---LTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1103)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~---l~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~l 232 (1103)
...+.++.+|..+....++. |.. .+-..++.+...+.....+.++..|+..+..+..+.+ ..+.... ...
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~---Cv~~~a~--~~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE---CVTDLAT--CNV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH---HHHHHHh--hhH
Confidence 35578888898888876532 111 1223345555555544477888888888776654322 1111111 123
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001307 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
+..+.+.+. .-|..|..++..|-.+..+. +.....+.. -+..++.++.+ ...+..|.++-+.+..+..
T Consensus 1815 L~~LL~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~-~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1815 LTTLLTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCL-TNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhc-cCcHHHHHHHHHHHHHhhh
Confidence 444444454 36778888998888877643 222222211 11122222222 2356677777777766654
No 280
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=79.82 E-value=84 Score=32.97 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCChH-HHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhh
Q 001307 379 SEQLPAYLAAPEWQ-KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1103)
Q Consensus 379 ~~~l~~~l~~~~~~-~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (1103)
+..+..++++.+.. .-..|+.-++++++..|+...-..+ ..=..++..+++++++||..|+.++..+.
T Consensus 358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 34444455543332 2345777788888887764432222 22345677889999999999999886654
No 281
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.79 E-value=77 Score=32.56 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001307 389 PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1103)
..|....+....+..++...++ +-.++++.+...+ ++.++.++..++.++..+++.---++ ......+.+
T Consensus 96 ~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~-----~s~w~vl~~ 166 (234)
T PF12530_consen 96 EFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF-----YSAWKVLQK 166 (234)
T ss_pred chHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHH
Confidence 4577777766777777766665 5667777777777 78889999999999999985433333 233344444
Q ss_pred hccCCCCcchHHHHHHHHHHHHhcC-CcccccCchHHHHHHHHHHhhcCCh
Q 001307 468 AMDDFQNPRVQAHAASAVLNFSENC-TPEILTPYLDGIVSKLLVLLQNGKQ 517 (1103)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~-~~~~l~~~l~~ll~~L~~~l~~~~~ 517 (1103)
.++....|.+....|..+..+-... +.+....+...++..+.+.....+.
T Consensus 167 ~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 167 KLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred hcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 4444345666555454444332221 2222334566677777777666553
No 282
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.76 E-value=2.5 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHH
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAI 442 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L 442 (1103)
+.+...+...+.|+++.||.+|...+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 37788889999999999999998653
No 283
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=79.46 E-value=26 Score=31.57 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhh
Q 001307 373 TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (1103)
.+++.++|.+...+. +.....|-++++.++.++...+ .-.+.+..++..+......... ...+..++..++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467889999999998 6778999999999999987543 1113455566666655555544 56677788877743
No 284
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.46 E-value=1.1e+02 Score=33.61 Aligned_cols=221 Identities=13% Similarity=0.078 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh----h-h
Q 001307 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ----Y-I 174 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~----~-~ 174 (1103)
.-..+-+.+...+..|.+.........+++.-.... ...-=+.++..+...+++..+..|..-+..++.+.. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 445666777888888888888888777777666544 212335678888888888888899999988888875 1 1
Q ss_pred hhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH----hcCCcch-HhHHHhh----HHHHH--HHHHHHHhCC
Q 001307 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ----CLTSSAD-RDRFQDL----LPLMM--RTLTESLNNG 243 (1103)
Q Consensus 175 ~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~----~~~~~~~-~~~~~~~----ip~ll--~~l~~~l~~~ 243 (1103)
.....+..+.++..+.+...++ ........+.+...++. ..+.... ...+..+ =|.++ +.+...+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANP-LQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 1222334556666666666665 22222111111111111 0000000 0000000 00110 0111111 2
Q ss_pred CHHHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001307 244 NEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1103)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1103)
+++...-.++.+..+.........+.. ..+-..++.++........+|..|.+.+..+.. ..|.. +...+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~---~~~~~------l~~~l 245 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA---SNPEL------LSKSL 245 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---hChHH------HHHHH
Confidence 445555566666666655544333222 334444444444444478899999999998887 34432 44556
Q ss_pred HHHHHHhhcCC
Q 001307 323 FAILMSMLLDI 333 (1103)
Q Consensus 323 ~~~l~~~l~~~ 333 (1103)
+..+..++...
T Consensus 246 i~~l~~~l~~~ 256 (339)
T PF12074_consen 246 ISGLWKWLSSS 256 (339)
T ss_pred HHHHHHHHHhc
Confidence 66666666543
No 285
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=77.84 E-value=7.3 Score=33.75 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=55.4
Q ss_pred cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh-hHhhHhhhhHHHHHHHhhc
Q 001307 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVNA 556 (1103)
Q Consensus 494 ~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 556 (1103)
++.+.||++.++..+...+.+-.+.+|..++..+..+.+.+++. +..+...+++.....+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 34578999999999999999999999999999999999999988 6678888888888887654
No 286
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.78 E-value=13 Score=35.37 Aligned_cols=141 Identities=18% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-
Q 001307 61 LAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE- 138 (1103)
Q Consensus 61 L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~- 138 (1103)
++.-+.. ..++++|..+.+++-+.+... ..+..+.+ ...++.+..+....-...+..+++.+......-
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~--------~~~~~~~~-~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA--------REEFKEKI-SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh--------HHHHHHHH-HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 3333443 678899999999999876332 12222222 233333333333333333444444432210000
Q ss_pred ---CCcchhHHHHHHhhc--CCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChH-HHHHHHHHHHH
Q 001307 139 ---NGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD-VKIAALNAVIN 211 (1103)
Q Consensus 139 ---~~w~~ll~~l~~~~~--s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~~l~~ 211 (1103)
-.-+.+++.+...+. +.+......+++++..-|..-.-. ........+.+....+.+.+.. +|..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 022466777777777 667777888888888776542110 0134556667778886543555 77777666543
No 287
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.46 E-value=1.2e+02 Score=33.40 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=95.7
Q ss_pred CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh-----hcHHHHHHhHHHHHHHHHhcCCCCChhHHH---HHHHHHH
Q 001307 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-----GCAKVMVKNLEQVLSMVLNSFRDPHPRVRW---AAINAIG 443 (1103)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~-----~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~---~a~~~L~ 443 (1103)
..+-+.++..+...+++.....|++-+.+++.+.. .....+.+.++.++..+-+....+.+.... .++.++-
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 46667788899999998888899999999988774 233355566667777766666666554331 1111111
Q ss_pred HhhhhhchhHHh-hh---------hh--hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHH
Q 001307 444 QLSTDLGPDLQN-QF---------HP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1103)
Q Consensus 444 ~l~~~~~~~~~~-~~---------~~--~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~ 511 (1103)
.+.....+.+.. .. -+ -+-+.+...+.+ .....-.+.++..+........-.......-..++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~---~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~l 212 (339)
T PF12074_consen 136 ALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS---EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYL 212 (339)
T ss_pred HhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC---HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence 111101111100 00 00 111222222222 1222334555555555544321111135556667777
Q ss_pred hhcC--ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHh
Q 001307 512 LQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1103)
Q Consensus 512 l~~~--~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1103)
+-++ .+.+|..++.++..+....+..+ -..++.-+.+.+.
T Consensus 213 l~s~~~~~~vR~~A~~~l~~l~~~~~~~l---~~~li~~l~~~l~ 254 (339)
T PF12074_consen 213 LCSSNVSWKVRRAALSALKKLYASNPELL---SKSLISGLWKWLS 254 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHH
Confidence 7777 79999999999999887666542 2334444444443
No 288
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=77.46 E-value=79 Score=31.37 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH
Q 001307 856 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE 930 (1103)
Q Consensus 856 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 930 (1103)
.+..+-.++|..++.+|+. .+-+++|.-... .+.....|.+-+-++.+-+.. ....-|.+.++|....
T Consensus 57 ~~~~~e~~lgaAi~amGpe---~vL~~lPLnl~~--~~~~~~~raWLLPlLr~~i~~--~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 57 FRKELEQVLGAAIRAMGPE---QVLSILPLNLDN--ADDSQPGRAWLLPLLRDHIRN--ASLSFFVEEFLPLARR 124 (198)
T ss_pred hHHHHHHHHHHHHHHCCHH---HHHHHCCCCccC--CCcCCcccchhHHHHHHhccC--CChHHHHHHHHHHHHH
Confidence 3556778889999999875 222345533321 233455688888888887654 3445577888886543
No 289
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=77.30 E-value=9.9 Score=35.83 Aligned_cols=101 Identities=7% Similarity=0.102 Sum_probs=52.7
Q ss_pred HHHHHHHHHHH-HhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHH-HHHhhC----hhhhhhhHHHHHHH
Q 001307 521 EGALTALASVA-DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL-VGMAVG----KDKFRDDAKQVMEV 594 (1103)
Q Consensus 521 ~~al~al~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~-i~~~~~----~~~~~~~~~~i~~~ 594 (1103)
..|+..+..+. ...++-+.|+++.+.|.+.+.|.++.+.+. ....-|+.+.-. ....+. .+.+...++.+++.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~-~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~S 138 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDV-EDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKS 138 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 56777777776 445555679999999999998877543221 111112222111 111111 13344444445555
Q ss_pred HHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCC
Q 001307 595 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1103)
Q Consensus 595 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1103)
+.++.+.+. ....+.++|..+-+.+..+
T Consensus 139 v~elV~~g~-----E~~~l~rgl~~~e~~v~~~ 166 (174)
T PF04510_consen 139 VKELVERGM-----EVGFLRRGLRDFESFVSRQ 166 (174)
T ss_pred HHHHHHccc-----HHHHHHHHHHHHHHHHHHH
Confidence 555544332 2246677777665554433
No 290
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=77.21 E-value=3.8 Score=34.26 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001307 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1103)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (1103)
..|++++.+|++++...+-.+-+.+++++..+.....| ...|+..+-.+++.+-+.-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 57899999999999998887778999999998888887 55688899999988876555443
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.13 E-value=31 Score=30.89 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh---hhHHHHHhhcc-------CCCCcchHHHHHHH
Q 001307 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP---QVLPALAGAMD-------DFQNPRVQAHAASA 484 (1103)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~---~il~~l~~~l~-------~~~~~~v~~~a~~a 484 (1103)
.+..++..|...|++.++.|+..++.+|..++....+.+. .++. .++..+...-. +.....||..|-.+
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~-~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK-RELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH-HHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4568999999999999999999999999999988776662 3322 23333333222 11344688888888
Q ss_pred HHHHHh
Q 001307 485 VLNFSE 490 (1103)
Q Consensus 485 l~~l~~ 490 (1103)
+..+..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 776653
No 292
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.16 E-value=11 Score=33.33 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=43.1
Q ss_pred hhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhhchhhHH--HHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001307 143 ELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLK--HLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1103)
Q Consensus 143 ~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~l~~~~~--~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1103)
+++..|.+++.. .++.....|+.=++.++...|.. +..+. ..-..+...++++ +++||..|+.|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 456666666633 34445555555566666665543 11121 2345677888997 99999999999998875
No 293
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=76.10 E-value=1.7e+02 Score=34.40 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh-hHHHHHHHHHH
Q 001307 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLN 191 (1103)
Q Consensus 120 vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~ 191 (1103)
+-..++..+..++.. .+...|+++=.+|.+.+-+++.-....++.+..-++.+...++-. |+..+..++..
T Consensus 244 lY~~vl~~Lctfi~~-~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~ 315 (559)
T PF14868_consen 244 LYQHVLVHLCTFIAS-LSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKS 315 (559)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 445566666666554 555799999999999999999988999999999888876665543 45555544443
No 294
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.00 E-value=31 Score=30.70 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhh-----ccCCCCcchHHHHHHHHHHH
Q 001307 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGA-----MDDFQNPRVQAHAASAVLNF 488 (1103)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~il~~l~~~-----l~~~~~~~v~~~a~~al~~l 488 (1103)
....++..|...+.+++|++...|+..|-.+.+.+++.+...... .++..+++. .....+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999988776433222 222223221 11113567888887776654
No 295
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.70 E-value=68 Score=32.37 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCC-CChhHHHHH-HHHHHHhhhhhchhH
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAA-INAIGQLSTDLGPDL 453 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a-~~~L~~l~~~~~~~~ 453 (1103)
......+..+..+..-..|..|+..++........ ..++.+...+.+ +++.+.... ..+++.+..
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~------ 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLK------ 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHH------
Confidence 34455666677777778888888777653322211 234444444443 456555554 333443321
Q ss_pred HhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
.+ +...+.+.+-+++ +++-+|..++.++..+... .+++.++..+...+.++...+|..+-.++..++..
T Consensus 117 --~~-~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 117 --KH-PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp --HH-GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred --hh-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 11 5677777777888 7788887777665444333 56677778777788888889998888888888776
Q ss_pred hhhhhHhhHhh
Q 001307 534 SQEHFQKYYDA 544 (1103)
Q Consensus 534 ~~~~~~~~~~~ 544 (1103)
.++...+|+..
T Consensus 186 ~~~~v~~~l~~ 196 (213)
T PF08713_consen 186 DPDEVLEFLQK 196 (213)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66554455433
No 296
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=74.20 E-value=96 Score=30.77 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001307 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1103)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (1103)
.+..++.+.+.++....+.+..++..+-..-.+++...|..+-.++|.....++|+.
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 445556666666655557777888888777777788899999999999999999854
No 297
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.94 E-value=1.3e+02 Score=32.02 Aligned_cols=306 Identities=14% Similarity=0.133 Sum_probs=154.6
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHH-hhh-hhhhHH
Q 001307 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQF-HPQVLP 463 (1103)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~~-~~~il~ 463 (1103)
-.+++-..-.-++.+|..+..+.++.+...-..++-.++. ++.++..+-...+.++..-|.. .+.. ..+ --.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~-~~~~~~dlt~~~~~~v~~Ac~~--hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA-LKVESEEVTLLTLQWLQKACIM--HEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh-cccchHHHHHHHHHHHHHHHHH--hHHHHHHHHHhhHHH
Confidence 3455555556677788888777776554333333322221 2223444544555444443321 1111 112 235777
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcc----cccCchHH-----HHHHHHHHhhc-CChhHHHHHHHHHHHHHHh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPE----ILTPYLDG-----IVSKLLVLLQN-GKQMVQEGALTALASVADS 533 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~----~l~~~l~~-----ll~~L~~~l~~-~~~~v~~~al~al~~l~~~ 533 (1103)
.+.+.++..+..++...+++++..+...-.-. ....|-.. ++..|...++- .++.+...+..+++.++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 77777766445567788899988776321100 01112111 23333333332 1355566677777777642
Q ss_pred hhhhhHhhHh--hhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhh------HHHHHHHHHHHhcCCCCC
Q 001307 534 SQEHFQKYYD--AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD------AKQVMEVLMSLQGSQMET 605 (1103)
Q Consensus 534 ~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~------~~~i~~~l~~l~~~~~~~ 605 (1103)
+.|-.-+. .=+..+..++....+ ...|..+=+|++.+..-.|.+..... .+.++..+.+-. +
T Consensus 273 --~E~C~~I~e~GGl~tl~~~i~d~n~---~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-----~ 342 (461)
T KOG4199|consen 273 --DEICKSIAESGGLDTLLRCIDDSNE---QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-----D 342 (461)
T ss_pred --HHHHHHHHHccCHHHHHHHHhhhch---hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-----C
Confidence 22211111 123345555543332 33455555666666555565544433 455555555421 2
Q ss_pred CCchhhHHHHHHHHHHhHhcCCcccchhh-hhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechh
Q 001307 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSV-VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~p~l~~-i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1103)
+..+...++.++.-++-..++.-..++.. .-...++.++..|..
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~----------------------------------- 387 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA----------------------------------- 387 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH-----------------------------------
Confidence 23366677777777777766665444442 233334444333311
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHH
Q 001307 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 740 (1103)
Q Consensus 685 ~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 740 (1103)
-.....||.++..++....+.-.|++..=++.++..-. ..|++++..|-.++.+|
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~-~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAK-ANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHH-hcCccHHHHHHHHHHhc
Confidence 11245688899988887666555555433333333222 23778888777776665
No 298
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=73.81 E-value=71 Score=32.88 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhcC
Q 001307 955 LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLNCL 1007 (1103)
Q Consensus 955 l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~~~~~l~~~l~~l 1007 (1103)
++.|...+.++. -+..+|.+|+.|++.+...++..- .+-++++.++...
T Consensus 113 ~~~L~~li~~~~----~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~ 162 (249)
T PF06685_consen 113 IEPLKELIEDPD----ADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF 162 (249)
T ss_pred HHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456777777664 578999999999999988876532 3345666666653
No 299
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.77 E-value=23 Score=31.66 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcC-------CcccchhhhHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-------DKSNRMLRAKSMECI 572 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-------~~~~~~lr~~a~~~l 572 (1103)
-+..+++.|.+-|++.++.|+-.++.+|..++...+..|...+..=...+..+.+-.. +.....+|..|-+++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3668899999999999999999999999999999888888777665555555432211 112345666666666
Q ss_pred HHH
Q 001307 573 SLV 575 (1103)
Q Consensus 573 ~~i 575 (1103)
..|
T Consensus 115 ~~i 117 (122)
T cd03572 115 KAI 117 (122)
T ss_pred HHH
Confidence 544
No 300
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.65 E-value=1.7e+02 Score=33.47 Aligned_cols=152 Identities=11% Similarity=0.144 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-CcchHHHHHHHHHHHHhcCCcccccCchHHHHHHH
Q 001307 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1103)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L 508 (1103)
+.++.-++++.++..+++...++- .+++|.+++.+-+.+ ...+|..++..++.+.+..... ...+..++..+
T Consensus 401 ~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~ 473 (559)
T KOG2081|consen 401 ASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYI 473 (559)
T ss_pred CchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHH
Confidence 345666777777777776665433 345555544433211 2238899999999998877543 23455555555
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhH
Q 001307 509 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1103)
Q Consensus 509 ~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~ 588 (1103)
+..++... ....+..++-.+...+...+.+.++.+...+........+.+.. ..+..++.+...++.++..+.+
T Consensus 474 ~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a----~l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 474 RQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAA----CLLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHH----HHHHHHHHHHhcCCHhhhhHHH
Confidence 55555433 55556666667777777666665555555544443332222211 1344455555556655566655
Q ss_pred HHHHHH
Q 001307 589 KQVMEV 594 (1103)
Q Consensus 589 ~~i~~~ 594 (1103)
+++...
T Consensus 548 ~el~~~ 553 (559)
T KOG2081|consen 548 EELCEP 553 (559)
T ss_pred HHHhhH
Confidence 555543
No 301
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=73.53 E-value=33 Score=31.84 Aligned_cols=92 Identities=5% Similarity=0.070 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHH-HHhhccCC--CCcchHHHHHHHHHHHHhc
Q 001307 417 EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 417 ~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1103)
...+..|...+. ++++.|...|+..|..+.+.++..+..... ..++.. |.+.+... ....|+..+...+....+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 355666777776 578999999999999999999887743322 345554 55655531 2348999999999999988
Q ss_pred CCcccccCchHHHHHHH
Q 001307 492 CTPEILTPYLDGIVSKL 508 (1103)
Q Consensus 492 ~~~~~l~~~l~~ll~~L 508 (1103)
++.+.-.+++..+...|
T Consensus 117 f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 117 FRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hCCCccchHHHHHHHHH
Confidence 86442224444444433
No 302
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=73.48 E-value=17 Score=35.88 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHH
Q 001307 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1103)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1103)
.++.++..+..-...+.+++......++.+ |..|-+....+...-+. +....+++.+-..+.|.+..||.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 455666555434566777777655555544 66666666665544433 33447888888999999999999999
Q ss_pred HHHHHhhhhhc
Q 001307 440 NAIGQLSTDLG 450 (1103)
Q Consensus 440 ~~L~~l~~~~~ 450 (1103)
|+|.+++.+.+
T Consensus 176 WaLrq~~k~~~ 186 (222)
T COG4912 176 WALRQIGKHSN 186 (222)
T ss_pred HHHHHHHhhch
Confidence 99999998443
No 303
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.04 E-value=24 Score=37.73 Aligned_cols=104 Identities=12% Similarity=0.203 Sum_probs=71.4
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhH
Q 001307 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVL 462 (1103)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~il 462 (1103)
+...+.+|..-...+--++.--+ .-...+..|.+.+...+|.|.-.|+..++.+...|+..+..+.. ..+.
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~--------~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPD--------GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCc--------ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 44556789765554444433222 22456778888999999999999999999999999876644432 2334
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc
Q 001307 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1103)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1103)
..+...+.+..+++|+++....+..+.+.+..+
T Consensus 91 ~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 444444553367889888888888888877654
No 304
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.53 E-value=1.7e+02 Score=38.14 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=75.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001307 385 YLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1103)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~ 463 (1103)
-+...|...|.-|+..++.+.+.... .....++.....+.+...|.+..||......+..+...++..+ .+|+..++|
T Consensus 49 kL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~li~ 127 (1312)
T KOG0803|consen 49 KLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSLIP 127 (1312)
T ss_pred HHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhhh
Confidence 33345677888888888887765432 2223344455556667889999999999999999999998888 799999999
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHH
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNF 488 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l 488 (1103)
..+-..-| ....|..+|...+...
T Consensus 128 ~wl~~~~d-~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 128 PWLGGQFD-LDYPVSEAAKASFKDG 151 (1312)
T ss_pred hhhheecc-cchHHHHHHHHHHHhh
Confidence 99988877 6666666665555443
No 305
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.32 E-value=3.1e+02 Score=35.86 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=80.0
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHH
Q 001307 778 KEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVF 857 (1103)
Q Consensus 778 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~ 857 (1103)
......++.+++.-+...+-...-...+...+.+...+...+.+ .+-.++
T Consensus 1537 ~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D------------------------------~~i~vr 1586 (1710)
T KOG1851|consen 1537 DSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLND------------------------------DQIEVR 1586 (1710)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcc------------------------------hHHHHH
Confidence 33456677777776665543321113455566666666555543 123478
Q ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHHHHHH
Q 001307 858 DQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLG 937 (1103)
Q Consensus 858 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~a~~~lg 937 (1103)
..+++++..+.+.....+.+-. +....+.....+..++..+ .|+.|+|
T Consensus 1587 e~Aa~~Lsgl~~~s~~~~~~~k--------------~d~~~~~~~s~s~~~i~~H------------------gavlgLg 1634 (1710)
T KOG1851|consen 1587 EEAAKCLSGLLQGSKFQFVSDK--------------RDTTSNILQSKSKDEIKAH------------------GAVLGLG 1634 (1710)
T ss_pred HHHHHHHHHHHhccccccchHh--------------hhhhhhhhhhcchHHHHhh------------------hhHHHHH
Confidence 8899999999986554444300 0111111111122222222 5778899
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcC
Q 001307 938 VCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 991 (1103)
Q Consensus 938 ~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 991 (1103)
.++-.-|..+-.+++..+..|....+.+ ..+++.+-.++..+=+.+.
T Consensus 1635 A~VlafPy~vP~wip~~L~~Ls~fa~e~-------~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1635 AIVLAFPYVVPLWIPKPLMNLSSFARES-------AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred HHHHhccccchhhhHHHHHHHHhhcCCc-------hHHHHHHHHHHHHHHHHhh
Confidence 8888777777667788777777766654 3344444444444433433
No 306
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.24 E-value=99 Score=32.28 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=85.0
Q ss_pred HHHHHHHHccCC----ChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 001307 58 TLKLAHLLQRSP----HPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1103)
Q Consensus 58 ~~~L~~il~~~~----~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1103)
++.+++-+.++. ++.++..|..+..-.-... ..++ ..++..+....-.....-+.+++..+..
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~----~~~L---------a~il~~ya~~~fr~~~dfl~~v~~~l~~ 179 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG----LPNL---------ARILSSYAKGRFRDKDDFLSQVVSYLRE 179 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC----CccH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 345555554422 3667776665555431111 1211 2334444432223344445556666666
Q ss_pred cccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 001307 134 NILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1103)
Q Consensus 134 ~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1103)
+.+| +.+.+.+-++..++.++-...|...+.++..+....+-. .++..+++..+...++.+ - -..|++.+..++
T Consensus 180 ~f~P-~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~-~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 180 AFFP-DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD-L---WMEALEVLDEIV 253 (262)
T ss_pred HhCc-hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc-c---HHHHHHHHHHHH
Confidence 6666 677889999999999888889999999999999876443 346677888888888764 2 235666665555
Q ss_pred H
Q 001307 214 Q 214 (1103)
Q Consensus 214 ~ 214 (1103)
.
T Consensus 254 ~ 254 (262)
T PF14225_consen 254 T 254 (262)
T ss_pred h
Confidence 4
No 307
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.03 E-value=75 Score=30.59 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcch----HhHHHhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSAD----RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~i-p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 272 (1103)
+...|..+++.+..+++....... ...+...+ ..+...+...+.++++.+...+++++..+...+...+...+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777765321100 01122211 2344444444445568888899999999998888888888888
Q ss_pred HHHHHHH-hhcCCCcchHHHHHHHHHHHHHHH
Q 001307 273 VVGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 273 l~~~l~~-~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
++..++. ++..+......|..+++++..+++
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 8887776 554433234578889999999987
No 308
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=71.49 E-value=33 Score=35.08 Aligned_cols=123 Identities=11% Similarity=0.154 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhhchhhhHHH-----HHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhH--HhHHHHHHH--
Q 001307 860 VGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLE-- 930 (1103)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~-----l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~-- 930 (1103)
+..++..++. +++.-.+++.. +.|++...-+...-...|-.+++++|.+++.-...+..|+ ..++|.+++
T Consensus 70 aLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 70 ALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 5555556655 44433344443 4455443321112245789999999999998777776654 678887776
Q ss_pred ---------HHHHHHHHHHhhc-C-C---CchHHHHHHHHHHHHhh----cCCCCCChhhhhHHHHHHHHHHHHHhh
Q 001307 931 ---------AAVYGLGVCAEFG-G-S---VVKPLVGEALSRLNVVI----RHPNALQPENLMAYDNAVSALGKICQF 989 (1103)
Q Consensus 931 ---------~a~~~lg~l~~~~-~-~---~~~~~~~~~l~~L~~~l----~~~~~~~~~~~~~~~na~~al~~l~~~ 989 (1103)
.|.|-+..+.... | . +....+..+...|.+++ ..+ +...-..++.|--|+...
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p------S~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP------SPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--------HHHHHHHHHHHHHHTTS
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC------ChhHHHHHHHHHHHHccC
Confidence 5666665554321 1 0 11122223333333333 222 556777788887776544
No 309
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=71.46 E-value=87 Score=29.08 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHH-HHHHHhhcCCcccchhhhHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLV 575 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~-~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~~~~~~~lr~~a~~~l~~i 575 (1103)
.-...+..|.+-+.+ .++.+...|+..+..++..+|..|...+ ..++.- |...+....+ ....+|.++++.+...
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~-~~~~Vk~kil~li~~W 113 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNN-PPTIVQEKVLALIQAW 113 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCC-CcHHHHHHHHHHHHHH
Confidence 345566777777764 5788888999999999999998887544 356664 6666643221 2346788899999999
Q ss_pred HHhhChhhhhhhHHHHHHHH
Q 001307 576 GMAVGKDKFRDDAKQVMEVL 595 (1103)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l 595 (1103)
+.+++.+.=.+++.++.+.|
T Consensus 114 ~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 114 ADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred HHHhCCCccchHHHHHHHHH
Confidence 88776332223344444433
No 310
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.97 E-value=15 Score=37.99 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=68.2
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch
Q 001307 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL 501 (1103)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l 501 (1103)
.+...+.+++|.||.+|..-+..+... +......|....++.+.+.+.+ ..+ ...|..++.++.....-. ...+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l~--~~ll 80 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEELR--KKLL 80 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHHH--HHHH
Confidence 456678999999999999777666555 3333356778889999999988 555 467778888887654311 1233
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 502 DGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 502 ~~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
+.++..++..+.++....-...+..+.++++
T Consensus 81 ~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 4455566666666544444455555555543
No 311
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.60 E-value=1.5e+02 Score=34.61 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (1103)
.+..+...+.=.++..|++.=.+++-++-..|. -.++..+-+..+|.+..|-..+..++|-+...
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 445555566657788898888888877655432 25677788888899999988888888876543
No 312
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.42 E-value=54 Score=30.32 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCC------CCChhHHHHHHHHHHHhhhh
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR------DPHPRVRWAAINAIGQLSTD 448 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~------d~~~~vr~~a~~~L~~l~~~ 448 (1103)
..+..+...+++.++++..-|+..|..++++|+..+...+. .++..+...+. ..++.|+...+..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35566677788899988889999999999999875544332 34444444443 36789999999999888877
Q ss_pred hch
Q 001307 449 LGP 451 (1103)
Q Consensus 449 ~~~ 451 (1103)
++.
T Consensus 118 f~~ 120 (139)
T cd03567 118 LPH 120 (139)
T ss_pred hcc
Confidence 753
No 313
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.36 E-value=3.4e+02 Score=35.51 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhc
Q 001307 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1103)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1103)
|-.....++.++....+.+ +.++...++....++....|-.|+..+..+....|+...+.+++.+|+|-++++..
T Consensus 1520 v~~~li~~i~~~~~a~~~d-----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDD-----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhh-----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 4444555555543333322 55566666666667778999999999999999999999999999999999998652
Q ss_pred CCcccchhhhHHHHHHHHHHHhhChhhhhhh
Q 001307 557 TDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (1103)
Q Consensus 557 ~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~ 587 (1103)
...+...+-+.+..+-..+| |.|..|
T Consensus 1595 ----~~~Ve~~~q~li~q~e~~lG-E~l~~y 1620 (1621)
T KOG1837|consen 1595 ----DDEVECLCQKLIRQLEEVLG-EPLQSY 1620 (1621)
T ss_pred ----HHHHHHHHHHHHHHHHHHhc-hhhhhc
Confidence 22344444445555555666 545443
No 314
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.35 E-value=8.2 Score=39.12 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
+.+.+.+.++++|++.-.|++++..+...... ..++.++..+...+.|++..||.+..|+|..++...++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 55778888899988855555555444333322 56678888888899999999999999999998876544
No 315
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=69.85 E-value=1.8e+02 Score=31.98 Aligned_cols=172 Identities=15% Similarity=0.301 Sum_probs=96.9
Q ss_pred CcchhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhh--c-hhhHHHHHHHHHHhhCCC-------------CChHHH
Q 001307 140 GWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDT--L-TPHLKHLHAVFLNCLTNS-------------NNPDVK 202 (1103)
Q Consensus 140 ~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~--l-~~~~~~l~~~l~~~l~~~-------------~~~~vr 202 (1103)
.|...+..+.++++. .+|++-.. +|..++..+.+. + ...++.+...+.+.+.|. ...++.
T Consensus 138 ~is~~~~~il~~L~~e~dWeV~s~---VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~ 214 (356)
T PF03542_consen 138 PISEWFSVILQCLEHETDWEVYSY---VLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQ 214 (356)
T ss_pred eHHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHH
Confidence 456667777777764 36644322 222232222111 0 112444444444443322 245777
Q ss_pred HHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhc
Q 001307 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE 282 (1103)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~ 282 (1103)
...+.+|..++.+...- +... + ..+++.+...+.+ .....++.+|.-.+-.-|..+.+.++.++..+-++..
T Consensus 215 ~~~~~~Ls~LisYh~~~-~k~~-q---d~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 215 VCVFPVLSALISYHSHF-SKQE-Q---DEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHHHHhc-CHhH-H---HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 88889999998874311 1111 1 1455555555544 2345566666655555678888888888877765543
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhccc-hhhhcch-hhHHHHHHHHHHhh
Q 001307 283 AESLEEGTRHLAIEFVITLAEARERAP-GMMRKLP-QFINRLFAILMSML 330 (1103)
Q Consensus 283 ~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~l 330 (1103)
...+..-.+|++..+++ .| .....+. .....++..+++++
T Consensus 287 ----t~~~Ai~ILEFLs~L~~----lP~~ly~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 287 ----TPNMAIHILEFLSSLSR----LPNHLYSNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred ----chhhHHHHHHHHHHHhh----CcHHHhcCCCHHHHHHHHHHHhhcc
Confidence 34456668899999987 56 5554432 35566777777765
No 316
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=69.13 E-value=1.1e+02 Score=29.40 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=66.6
Q ss_pred CHhHHHHHHHHHHHhhhhhhhhch---h-------hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH
Q 001307 156 SVKLQESAFLIFAQLSQYIGDTLT---P-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1103)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~l~---~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 225 (1103)
+...|..|+.++..+.+..++.+. . .-..+.+.+.+.+..+ +..+-..+++.+..++..+. ..+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~-----~~L 108 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFR-----SHL 108 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH-----HHH
Confidence 446788899999999888776655 1 1245667777777666 68888889999998887652 223
Q ss_pred HhhHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHHHHcc
Q 001307 226 QDLLPLMMRTLTE-SLNNGN--EATAQEALELLIELAGT 261 (1103)
Q Consensus 226 ~~~ip~ll~~l~~-~l~~~~--~~~~~~~~~~l~~l~~~ 261 (1103)
..-+..++..+.. .+.++. ...+..+++++..++..
T Consensus 109 k~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 109 KLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 3334445554444 444333 35677789999988863
No 317
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=68.88 E-value=25 Score=29.78 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhc-cCCCCHHHHHHHHHHHHHH
Q 001307 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMW-GKDKTAEERRIAICIFDDV 909 (1103)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~r~~a~~~l~~l 909 (1103)
..+.+|+.++++++.+++.++......-..+...+.+.+ +++++...+-=|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999998765555555777666654 3344554555555555555
No 318
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.84 E-value=26 Score=33.34 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=79.3
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCC--C
Q 001307 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--D 429 (1103)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~--d 429 (1103)
.+..+.-++.++....+ +.+...+..++...+...+......++.++..+..+.++.....+ +.+++.+..... .
T Consensus 21 ~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 44445555555543333 455556666777777655455666777788887777776544332 345666666666 6
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcc-hHHHHHHHHH
Q 001307 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVL 486 (1103)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~ 486 (1103)
++..++.+++.++..-|.. ...+.-.....++.|-+..+..++.. +|..|.-.|.
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7888999999998776543 22323446677777777775424444 6777766654
No 319
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=68.78 E-value=24 Score=29.87 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=46.1
Q ss_pred CCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHH
Q 001307 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFI 213 (1103)
Q Consensus 154 s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~ 213 (1103)
+.++..|+.|..+++.++..+++......+.+...+.+.+.|+ .+...+..|+..|..+-
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3467899999999999999887654445667888888888876 25567778888777663
No 320
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=68.26 E-value=6.7 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhh
Q 001307 419 VLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1103)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (1103)
.++.+...++++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5666777777889999999999999876
No 321
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=67.88 E-value=1.9e+02 Score=31.54 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=114.2
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCcc-cc--CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc------ccCC
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLW-PR--LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN------ILPE 138 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w-~~--l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~------~~~~ 138 (1103)
.-+-+.|.-++.++.+.+.......+ .. .-...+..+...|+++... +.+--..+.++...+++ .+.
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g~mlRec~k~e~l~~~iL~- 162 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCGDMLRECIKHESLAKIILY- 162 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHHHHHHHHTTSHHHHHHHHT-
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHHHHHHHHHhhHHHHHHHhC-
Confidence 44667788888777777766422111 00 0011113344444444443 23333333444333332 121
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh----hhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~----~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1103)
++.+..+++..+.++-++-.-|+..+..+.... .+.+..+.+.++..+.+.+.++ +--+|..+++.|+.++.
T Consensus 163 ---~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 163 ---SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLL 238 (335)
T ss_dssp ---SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHH
Confidence 233444777888888777777777777766542 2335567888999889999997 99999999999999986
Q ss_pred hcCCcchHhHHHhh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc--hHHHHH----hHHHHHHHHHHhhc
Q 001307 215 CLTSSADRDRFQDL--LPLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLRR----QLVDVVGSMLQIAE 282 (1103)
Q Consensus 215 ~~~~~~~~~~~~~~--ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~~~~~~----~~~~l~~~l~~~~~ 282 (1103)
.-. ........ =|.-++.+..++.+....++..|+.++.-++.+. ++.+.. .=..++.++-+...
T Consensus 239 dr~---n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~ 311 (335)
T PF08569_consen 239 DRS---NFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHT 311 (335)
T ss_dssp SGG---GHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTT
T ss_pred chh---HHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 321 11111111 1456677777788888889999988888777543 222322 22355665555443
No 322
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=66.68 E-value=11 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 001307 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1103)
Q Consensus 167 l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1103)
++.+.+..+..+ ..+.+...+...+.|+ ++.||.+|+..+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~-s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDS-SPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCC-ChHHHHHHHHHC
Confidence 344444433332 2357888999999998 999999998753
No 323
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.55 E-value=69 Score=28.43 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHh----cC--CCCChhHHHHHHHHHHH
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 444 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~L~~ 444 (1103)
.....++..+...+.+.+|+...-|+..+..+..+|++.+..++.. .+..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456677888888888999999999999999999999866554432 2222221 11 34578899998887755
Q ss_pred h
Q 001307 445 L 445 (1103)
Q Consensus 445 l 445 (1103)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 3
No 324
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.48 E-value=3.5e+02 Score=34.13 Aligned_cols=126 Identities=13% Similarity=0.221 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHHH-HHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 001307 394 HHAALIALAQIAEGCAKVMVKNLEQVLSM-VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1103)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l~~i~~~-l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1103)
|...+.......+...+.+...+..++.. ++...+|-.|.||..|...||..+...+..+. -...+..+-=.|+|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeec-
Confidence 56666666555555555555566666653 34567899999999999999988877765542 23445555556788
Q ss_pred CCcchHHHHHHHHHHHHhcCCc-ccccCchHHHHHHHHHHh-hcCChhHHHHH
Q 001307 473 QNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLL-QNGKQMVQEGA 523 (1103)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~-~~l~~~l~~ll~~L~~~l-~~~~~~v~~~a 523 (1103)
.+..||..+..+|..+.+.-.. ..+.-+....=..++.+. .+-+..||...
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~ 390 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVG 390 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence 8899999999999999987210 112223333334444444 23344555443
No 325
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=65.60 E-value=3.4e+02 Score=33.65 Aligned_cols=123 Identities=16% Similarity=0.041 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhh----hchhHHhhhhhhhHHHHHhhccC-CCCcchHHHHHHHHHHHHhc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD----LGPDLQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~----~~~~~~~~~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~ 491 (1103)
+..+|.+...+-++++.+|.=|...+.++... ...++.....+.+...+... +. ..++.....--..+..+++.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 55677777788889999999999999887653 22233112333444444443 22 02333333445556666666
Q ss_pred CCcccccCchHH-----HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHh
Q 001307 492 CTPEILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1103)
Q Consensus 492 ~~~~~l~~~l~~-----ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~ 540 (1103)
++.+.+..++.. ++..++.-+...........+.++..+....+..|-.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWD 251 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhc
Confidence 666555444433 5556666666654555577889999999999987743
No 326
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.31 E-value=2.8e+02 Score=36.47 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhh---cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001307 396 AALIALAQIAEG---CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 396 aal~~l~~l~~~---~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1103)
....++..+++- .-+.+...++.++..+..+...++..+-.....|+.++....+..+.+..+..+...+...++.
T Consensus 1244 T~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1244 TCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 344444444443 3344456677788888888899999998999999999988877777566677777777666554
No 327
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.18 E-value=56 Score=34.17 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=67.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~i 461 (1103)
+..++.+.++.+|.+|...+..+.......+..+-...++.+.+.+.++.+ -..|..++.+++.... ..+..+..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~--l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE--LRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 456778889999999987666555443344445556778888888888877 4556678888776432 223344445
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHh
Q 001307 462 LPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
+..++..+.+ +........|-.+.++..
T Consensus 84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 5666666666 545555666666666643
No 328
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=63.74 E-value=3.1e+02 Score=32.47 Aligned_cols=315 Identities=11% Similarity=0.106 Sum_probs=146.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcc----hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-cchHHHHHhHH-
Q 001307 198 NPDVKIAALNAVINFIQCLTSSA----DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG-TEPRFLRRQLV- 271 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~- 271 (1103)
+.+++.+-+..+..++.-+.... +...+.+.+..+.+.+.+.... +.....++-....++- ..+++|..+-.
T Consensus 144 ~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~ 221 (552)
T PF14222_consen 144 KSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLP 221 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHH
Confidence 56799999999988876543211 1222333333444444444432 3333445555554443 34566777666
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh--ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccc
Q 001307 272 DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE--RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDA 349 (1103)
Q Consensus 272 ~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~ 349 (1103)
.+++.+..-+. +...|..+++++..++-.+- +.+.........++.++..++.. ....|...|
T Consensus 222 ~~i~~~~~klK----dk~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~-----~kk~~i~~D------ 286 (552)
T PF14222_consen 222 SLIESLISKLK----DKETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPK-----GKKGWIPRD------ 286 (552)
T ss_pred HHHHHHHhhcC----ChhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccC-----CCCcccCCC------
Confidence 57776665443 34678888887777655321 11111111123445555555421 112344332
Q ss_pred cCCCchhhHHHHHHHHHHHcCCCcc-hHHHHHHHHHhhc-----CCChHHHHHHHHHHHHHHhhcHHHHHH---------
Q 001307 350 GESSNYSVGQECLDRLAIALGGNTI-VPVASEQLPAYLA-----APEWQKHHAALIALAQIAEGCAKVMVK--------- 414 (1103)
Q Consensus 350 ~~~~~~~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~l~~~~~~~~~~--------- 414 (1103)
....+.-.+.+..++.... +.. -..+++.+..... +-+|+.-..++.++-.+.......-.+
T Consensus 287 --~~~~~~lv~ii~~I~~~~~-df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~ 363 (552)
T PF14222_consen 287 --PEPLNPLVQIIRFIGYKHL-DFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDP 363 (552)
T ss_pred --hhhhhhHHHHHHhHhhhCc-chHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCC
Confidence 0122233344444444332 222 2335555544332 235777777777777766542210000
Q ss_pred ----------hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH----------HHHhhccCCCC
Q 001307 415 ----------NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP----------ALAGAMDDFQN 474 (1103)
Q Consensus 415 ----------~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~----------~l~~~l~~~~~ 474 (1103)
...+.++ .....++.....-...+.+++++...+...+.......--. ...-..++ ..
T Consensus 364 ~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~-d~ 441 (552)
T PF14222_consen 364 SGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRND-DM 441 (552)
T ss_pred CCcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccc-cc
Confidence 0000011 00011111112233455666666655543321111000000 00000111 00
Q ss_pred cchHHHHHHHHHHHHhcCCcccccC--chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 475 PRVQAHAASAVLNFSENCTPEILTP--YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~--~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
..-+......+...++..+ ..+.. -...+++.|....-+.++.+++.|..++-.++...+
T Consensus 442 ~~~~~~~~~Lf~t~i~aiP-rcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 442 VTDQKPQLDLFRTCIQAIP-RCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred cccccchhHHHHHHHHHcc-ccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 0111222344444444433 12222 246778888887778899999999999999987654
No 329
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.58 E-value=25 Score=34.28 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh---hChhhh
Q 001307 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA---VGKDKF 584 (1103)
Q Consensus 508 L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~---~~~~~~ 584 (1103)
++..+...+...|-.|-.-+..+..+.++...|.+++++..|+..+... | ..+...++..+..+... +| ..+
T Consensus 119 F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr-d---~ev~~~~Lkvlq~lv~~~~~vG-~aL 193 (262)
T KOG3961|consen 119 FFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR-D---DEVICRTLKVLQQLVVSVGCVG-AAL 193 (262)
T ss_pred HhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc-c---HHHHHHHHHHHHHHHHhccccc-hhh
Confidence 3333333344445556666677777778888999999999999998763 2 23455677777766553 56 678
Q ss_pred hhhHHHHHHHHHHHhc
Q 001307 585 RDDAKQVMEVLMSLQG 600 (1103)
Q Consensus 585 ~~~~~~i~~~l~~l~~ 600 (1103)
.||-.++++.+-...+
T Consensus 194 VPfYRQlLp~~n~~k~ 209 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFKN 209 (262)
T ss_pred hhHHHHhhhhhhhhcc
Confidence 8999999887755433
No 330
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=62.14 E-value=27 Score=39.08 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccC
Q 001307 394 HHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD 471 (1103)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~ 471 (1103)
-.|++.+|.+++....-.-....+ ++...++..|.+|+.+|...+...+..+...+.+-- ..+ -..++..+.+.+..
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhhc
Confidence 346667777776553321112222 578888999999888888776665555444333311 222 23566666676666
Q ss_pred CCCcchHHHHHHHHHHHHhcCCccc-ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001307 472 FQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1103)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~ 531 (1103)
++..+|....|.+..+.-++..+. +.+.-..=++.++...+++...++++.+..+..+-
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 567889999999999988876542 22333333788888889999999999999988864
No 331
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=61.85 E-value=2.9e+02 Score=31.57 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc-CChh
Q 001307 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN-GKQM 518 (1103)
Q Consensus 440 ~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~-~~~~ 518 (1103)
..+++..+.-+.-+ .++++.+++.|. . ..| ...++...+..++..-.++. ++..++.|...+.+ ....
T Consensus 184 rvlS~Vye~~P~~i-~PhlP~l~~lL~----q-~~p-~~~~ll~~l~~LI~Qk~~ev----L~~ciP~L~g~l~ds~~~~ 252 (851)
T KOG3723|consen 184 RVLSAVYEKQPQPI-NPHLPELLALLS----Q-LEP-EQYHLLRLLHVLIKQKQLEV----LQKCIPFLIGHLKDSTHND 252 (851)
T ss_pred HHHHHHHhcCCCcc-CcccHHHHHHhc----C-CCH-HHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHhccccchh
Confidence 34444444433322 455555555443 3 333 23555666666665554443 44444555444433 3455
Q ss_pred HHHHHHHHHHHHHH
Q 001307 519 VQEGALTALASVAD 532 (1103)
Q Consensus 519 v~~~al~al~~l~~ 532 (1103)
++..++.-|+....
T Consensus 253 i~~~Ilk~ia~~~p 266 (851)
T KOG3723|consen 253 IILNILKEIAVYEP 266 (851)
T ss_pred HHHHHHHHHHhcCc
Confidence 66666666655443
No 332
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=61.84 E-value=23 Score=28.34 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC
Q 001307 435 RWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
.++|+|++|.++..-.. ..++ ..+++.+++.....+...+|..+..+|.-+....
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 56899999999864222 1333 3689999988776578899999999999887553
No 333
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.56 E-value=2.1e+02 Score=29.90 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch-hhHHHHHHHHHHhhCCCCC
Q 001307 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNN 198 (1103)
Q Consensus 120 vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~-~~~~~l~~~l~~~l~~~~~ 198 (1103)
.....|..|+.++.. .+.+.+-..+..+.+..-.. .-..+..++.++.+.+. ++-.+++..+...+.+. .
T Consensus 131 ~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr~----~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~-~ 201 (262)
T PF14225_consen 131 ECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFRD----KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG-P 201 (262)
T ss_pred HHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC-c
Confidence 344677888888753 35666655555555443211 12233444444444442 35677888888899887 8
Q ss_pred hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001307 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1103)
.-+|..+++.+..++...+-.. ...+.++..+.+.++.+-. .+|++++..++..
T Consensus 202 ~w~~~~~L~iL~~ll~~~d~~~------~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 202 PWLRRKTLQILKVLLPHVDMRS------PHGADLISPLLRLLQTDLW---MEALEVLDEIVTR 255 (262)
T ss_pred HHHHHHHHHHHHHHhccccCCC------CcchHHHHHHHHHhCCccH---HHHHHHHHHHHhh
Confidence 8999999999999998864321 1445567777777765443 4566666555443
No 334
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=61.51 E-value=30 Score=34.44 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHHhhcCCC-hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 380 EQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 380 ~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
+.+..+..|++ |..|.+....+..+.. ....+.++..+...+.|++..||.+..|+|..++...+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 56777888877 5555444433333322 246778888888999999999999999999999876443
No 335
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=60.25 E-value=1.3e+02 Score=28.54 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC---ChhHHHH-HHHHHHHHHHhhhhhhHhhHhhhhHHHHH
Q 001307 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG---KQMVQEG-ALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~---~~~v~~~-al~al~~l~~~~~~~~~~~~~~i~~~l~~ 551 (1103)
.+-..+..++..++-.+....+.|.+-.+++.-..-+... ....|.. -+..+..++...+.-|.||+..+++....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888877777888888777665533322 2233333 34566778888888999999999999888
Q ss_pred HHhhc
Q 001307 552 ILVNA 556 (1103)
Q Consensus 552 ~l~~~ 556 (1103)
.|+..
T Consensus 116 ~L~~~ 120 (153)
T PF08146_consen 116 LLKQF 120 (153)
T ss_pred HHHHh
Confidence 88764
No 336
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=59.15 E-value=1.7e+02 Score=29.68 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=54.3
Q ss_pred Ccchh-HHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhhchhh--HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 140 GWPEL-LPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 140 ~w~~l-l~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~l~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
..|-. .|++-....+ +.+..|-.++.+++.+++....++..+ ..+++|.++..+... +...+..|...+..++..
T Consensus 120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKTVATFILQKILLD 198 (293)
T ss_pred cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHHHHHHHHHHHhhc
Confidence 44543 3555444433 567899999999999998765554332 356899999999997 888888888888887753
No 337
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=58.59 E-value=27 Score=27.96 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhh
Q 001307 393 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDL 449 (1103)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~ 449 (1103)
.+++++.+++.++..... + ++++ .+++.+.+... ++...+|..|+++|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G-~-~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG-I-QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH-H-HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 467899999999764322 1 2222 57777776654 688899999999999998654
No 338
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=58.21 E-value=12 Score=25.49 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=24.7
Q ss_pred hhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
..++.+++.+++ +++.++..++++|.+++
T Consensus 12 g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKS-EDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcC-CCHHHHHHHHHHHHHHc
Confidence 467888888887 78999999999999875
No 339
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=57.10 E-value=3.1e+02 Score=30.39 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchh---HHhhhhhhhHHHHHh-hccCCCCcchHHHHHHHHHHHHhcC
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD---LQNQFHPQVLPALAG-AMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~---~~~~~~~~il~~l~~-~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
+++++.+...+.+.+.....++..++|.++..-... ++..+++.++..+.+ .--| .+.+++.+++++|.++.--.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd-gnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD-GNVERQHACLSALRNLMIPV 392 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHhccccC
Confidence 358889999999999999999999999999753322 223455666666655 2334 67888999999999986432
Q ss_pred CcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 493 TPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 493 ~~~~l~~~l-~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
+.. ..+. ..+.+.++..++...|.+.-..+..+..+....
T Consensus 393 ~nk--a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 393 SNK--AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred Cch--hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 211 1122 235666777777767766666666666555543
No 340
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=56.99 E-value=50 Score=29.71 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC
Q 001307 414 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 414 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
.+++.++|.+..++. ...+..|.++...+++++...+= ..+.+..++..+++.... ... ...+..++..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 467889999999999 78899999999999999976532 134556666666666554 222 466777888887655
No 341
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=56.47 E-value=83 Score=30.29 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
++..+..+|..+.-.|.+.++++.+.|..+..-+|.. -+++|.. -.++.||++|.-.|++ +++
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~----aLeLL~~~f~d~~VR~yAV~~L~~------------~sd 100 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ----ALELLDCNFPDEHVREFAVRCLEK------------LSD 100 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHCCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 5677888888877778888888888888886644443 3444543 4569999999988886 346
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001307 99 HTQSSLKSMLLQSIQLES 116 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~ 116 (1103)
+......-+|+++|+-|+
T Consensus 101 ~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 101 DELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 666666778888888763
No 342
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=55.61 E-value=69 Score=42.38 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHH
Q 001307 400 ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479 (1103)
Q Consensus 400 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~ 479 (1103)
.+.....+....+..|++.++...-..++++++.|+.-+......+...+. .-+-.+++..|+..+.+ ++..-..
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~s-g~~~ev~ 491 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGS-GNSQEVD 491 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcC-CcHHHHH
Q ss_pred HHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCc
Q 001307 480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK 559 (1103)
Q Consensus 480 ~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 559 (1103)
.|...|..+++..+.. +.|| ..++..++..+++-+..--...+..++.++...+..-...-+.+.-++.+-+.+....
T Consensus 492 ~aL~vL~~L~~~~~~~-l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~ 569 (1426)
T PF14631_consen 492 AALDVLCELAEKNPSE-LQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPK 569 (1426)
T ss_dssp HHHHHHHHHHHH-HHH-HHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHH
T ss_pred HHHHHHHHHHhccHHH-HHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHH
Q ss_pred ccchhhhHHHHHHHHHHH
Q 001307 560 SNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 560 ~~~~lr~~a~~~l~~i~~ 577 (1103)
....--..|+..++.++.
T Consensus 570 ~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 570 YKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp HHHHHHHHHHHHHHHTT-
T ss_pred HHHHhHHHHHHHHHHHHH
No 343
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=55.42 E-value=51 Score=31.11 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHH
Q 001307 563 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1103)
Q Consensus 563 ~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~ 641 (1103)
.+-..+++|+-.++..+....|+|..-.+++.... +............-...+.+..+...++.-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888878899999999988754 21111111112344566778889999999999999999999887
Q ss_pred hcc
Q 001307 642 SAQ 644 (1103)
Q Consensus 642 ~~~ 644 (1103)
.++
T Consensus 116 ~L~ 118 (153)
T PF08146_consen 116 LLK 118 (153)
T ss_pred HHH
Confidence 774
No 344
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=55.35 E-value=4.4e+02 Score=31.65 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh
Q 001307 227 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1103)
Q Consensus 227 ~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 306 (1103)
.++-.++++|.....++=+.++..++..+..++...|+.=...+..+++.+ . +.+..+...|-..|..+..
T Consensus 300 ~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKl----G--DpqnKiaskAsylL~~L~~--- 370 (988)
T KOG2038|consen 300 ILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKL----G--DPQNKIASKASYLLEGLLA--- 370 (988)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhc----C--CcchhhhhhHHHHHHHHHh---
Confidence 344467777777666677788899999999998888876555555555433 2 3445566666666666665
Q ss_pred ccchhh
Q 001307 307 RAPGMM 312 (1103)
Q Consensus 307 ~~~~~~ 312 (1103)
..|+|.
T Consensus 371 ~HPnMK 376 (988)
T KOG2038|consen 371 KHPNMK 376 (988)
T ss_pred hCCcce
Confidence 467653
No 345
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.47 E-value=5.5e+02 Score=32.51 Aligned_cols=101 Identities=12% Similarity=0.189 Sum_probs=64.4
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc--hHHHH
Q 001307 190 LNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLR 267 (1103)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~~~~~ 267 (1103)
..-..|- .+.+|..++..|+.|+..++..+.. ...++.+.-.+.+.+..+|..++.+|..|.+.. ...+.
T Consensus 293 VHRYRDV-~~~IRaiCiqeLgiWi~~yP~~Fl~-------dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~ 364 (1048)
T KOG2011|consen 293 VHRYRDV-DPDIRAICIQELGIWIKSYPEIFLS-------DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLE 364 (1048)
T ss_pred eeecccC-chHHHHHHHHHHHHHHHhccHHHhc-------chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHH
Confidence 3344565 8999999999999999887532111 246666666677888999999999999998762 12222
Q ss_pred HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001307 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1103)
Q Consensus 268 ~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 299 (1103)
-+...+=.-++.++ ..+.+..||..++..+.
T Consensus 365 lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 365 LFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred HHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Confidence 22333333333343 34556677766654443
No 346
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=53.81 E-value=4.4e+02 Score=31.18 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhc-chhhHHHHHHHHHHHHHhc-------ccCCCCcchhHHHHH----HhhcCCCHhHHHHHHHHHHHhh
Q 001307 104 LKSMLLQSIQLE-SAKSISKKLCDTVSELASN-------ILPENGWPELLPFMF----QCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 104 ik~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~-------~~~~~~w~~ll~~l~----~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
+.+.+-+..... .+..++++.|+++..|..- +.....|.+.+..+. ++... +..-..++-+...+.
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lL 207 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLL 207 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHH
Confidence 334445555544 3556999999988777432 222247877765554 44433 333344665555554
Q ss_pred hhhh-hhchhhHH-HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhc---CCcchHhHHHhhHHHHHHHHHHHHhC----
Q 001307 172 QYIG-DTLTPHLK-HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL---TSSADRDRFQDLLPLMMRTLTESLNN---- 242 (1103)
Q Consensus 172 ~~~~-~~l~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~ip~ll~~l~~~l~~---- 242 (1103)
-..+ +.|..+.. .++..+..-+++. ..|..++.++..++-.+ ...+..+.-...+..+++.++..-+.
T Consensus 208 CvS~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~ 284 (552)
T PF14222_consen 208 CVSPKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIP 284 (552)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccC
Confidence 4333 34444555 4666666666654 78899999999876542 12222333344455566665532111
Q ss_pred CCHHHHHHHHHHHHHHHccchHH
Q 001307 243 GNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
.|.......++.+.-++..++++
T Consensus 285 ~D~~~~~~lv~ii~~I~~~~~df 307 (552)
T PF14222_consen 285 RDPEPLNPLVQIIRFIGYKHLDF 307 (552)
T ss_pred CChhhhhhHHHHHHhHhhhCcch
Confidence 12233333444455555555444
No 347
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=53.25 E-value=99 Score=29.16 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
++..+..+|..+--.+.+.++++.+.|.....-+|.. -+++|.. -.++.+|++|.-.|++ ++.
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~----aL~LL~~~~~~~~vr~yAv~~L~~------------~~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED----ALELLSPKYPDPVVRQYAVRVLES------------ASD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 4567778888877777888888888877765534433 3444443 4569999999988876 346
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001307 99 HTQSSLKSMLLQSIQLES 116 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~ 116 (1103)
+.......+|+++|+-|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 666677778888887654
No 348
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.57 E-value=2.4e+02 Score=27.75 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
-..+++...+ ++..+|..+.++++.+.+.-+- +. .+.+|.++.+..|+++..|..|..++..+.+..++.+
T Consensus 10 l~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLv-nP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLS-SDDSVRLAALQVLELILRQGLV-NP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCC-Ch-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 3456676665 6999999999999999885433 12 3689999999999999999999999999998766543
No 349
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=51.92 E-value=3e+02 Score=28.71 Aligned_cols=124 Identities=7% Similarity=0.112 Sum_probs=67.5
Q ss_pred CCcchHHHHHHHHHHHHhcCC---cccccCchHHHHHHHHHHhhcC-Ch---hHHHHH-H-HHHHHHHHhhhhhhHhhHh
Q 001307 473 QNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNG-KQ---MVQEGA-L-TALASVADSSQEHFQKYYD 543 (1103)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~---~~~l~~~l~~ll~~L~~~l~~~-~~---~v~~~a-l-~al~~l~~~~~~~~~~~~~ 543 (1103)
.+...-..+..++..+|+.+- ...+......-+..++..+.+. .. ..|..| + .++..+..+-+..-.+.++
T Consensus 109 rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~ 188 (255)
T PF10350_consen 109 RHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLH 188 (255)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHH
Confidence 344455666666666666543 1112233334455555555554 11 233322 2 2333444333322226778
Q ss_pred hhhHHHHHHHhhcCCcc----cchhhhHHHHHHHHHHH--hhChhhhhhhHHHHHHHHHH
Q 001307 544 AVMPFLKAILVNATDKS----NRMLRAKSMECISLVGM--AVGKDKFRDDAKQVMEVLMS 597 (1103)
Q Consensus 544 ~i~~~l~~~l~~~~~~~----~~~lr~~a~~~l~~i~~--~~~~~~~~~~~~~i~~~l~~ 597 (1103)
..|..|.++........ ...-+..|+.++..|.+ .++ +...||+.+.+.+-++
T Consensus 189 ~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~-~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 189 RTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLS-EDVSPYIEDALILAIK 247 (255)
T ss_pred HHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHHHH
Confidence 88888888776543211 12457788888887765 345 6677888887776665
No 350
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=51.34 E-value=2e+02 Score=26.76 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
+++-..+...|.++++.|+..|+.|+..+- .+ ++...-..|...++| ...|. .|..|.-.-+.+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k---~~-----~l~pY~d~L~~Lldd---~~frd----eL~~f~~~~~~~~ 80 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK---DP-----YLTPYKDNLENLLDD---KTFRD----ELTTFNLSDESSV 80 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cH-----HHHhHHHHHHHHcCc---chHHH----HHHhhcccCCcCC
Confidence 345566677889999999999999997643 22 223333444555555 23333 3333433222222
Q ss_pred cc-CchHHHHHHHHHHh
Q 001307 497 LT-PYLDGIVSKLLVLL 512 (1103)
Q Consensus 497 l~-~~l~~ll~~L~~~l 512 (1103)
+. .+-+.+++.++.++
T Consensus 81 I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCHHHHhHHHHHHHHHH
Confidence 22 34556666666554
No 351
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=50.41 E-value=2.4e+02 Score=32.18 Aligned_cols=176 Identities=11% Similarity=0.071 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHc---CCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCCh
Q 001307 357 VGQECLDRLAIAL---GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHP 432 (1103)
Q Consensus 357 ~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~ 432 (1103)
++..+|..+++.+ ...-.-..+.+.+.+.+.+++......+...+....-.....-...+ ..++..+.+.+...+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 4555666666543 11011122445555666666655554444444333221111111222 3567777777777777
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc-----ccccCc--hHHH
Q 001307 433 RVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----EILTPY--LDGI 504 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-----~~l~~~--l~~l 504 (1103)
..|....|.+..+.-.++....-++ ...=+..++...+| +...|+......|.+|.-.... +++-.. ..-+
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 8899999999887766655432233 33446778888899 9999999999999999754332 111111 1124
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 505 VSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 505 l~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
...+...+...++-.-...+..+-.++.+
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~ 595 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAAC 595 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhc
Confidence 55566666665654444445555555433
No 352
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.88 E-value=3.5e+02 Score=28.92 Aligned_cols=317 Identities=14% Similarity=0.204 Sum_probs=159.5
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhcC
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLT 217 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~ 217 (1103)
+..+-++-.+. +..+++......++.++..+...-++-+.-.- ..++...|++. .+.++....+.++..-.-..
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g---~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h- 178 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEA---MAVVLKLLALKVESEEVTLLTLQWLQKACIMH- 178 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcccc---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-
Confidence 45555555444 46677777777788888887776555433221 22334444432 25677777777776554321
Q ss_pred CcchHhHHHhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHccc---------hHHHHHhHHH-HHHHHHHhhcCCCc
Q 001307 218 SSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTE---------PRFLRRQLVD-VVGSMLQIAEAESL 286 (1103)
Q Consensus 218 ~~~~~~~~~~~ip~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~-l~~~l~~~~~~~~~ 286 (1103)
...+..|... .+++.+...+. .+..++..+.+..+..+.-.. ..+-+..... +...+...+.. ..
T Consensus 179 -E~nrQ~~m~~--~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A-~~ 254 (461)
T KOG4199|consen 179 -EVNRQLFMEL--KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA-GI 254 (461)
T ss_pred -HHHHHHHHHh--hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc-cC
Confidence 1122222211 23333333333 233346666677776554311 0111111111 12222222211 13
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHH
Q 001307 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1103)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~ 366 (1103)
++++-......+..++-..+ .++.... ..=+..++..|.+.. +...+..+.+|++.|.
T Consensus 255 dp~~L~~l~~tl~~lAVr~E----~C~~I~e--~GGl~tl~~~i~d~n----------------~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDE----ICKSIAE--SGGLDTLLRCIDDSN----------------EQGNRTLAKTCLSLLR 312 (461)
T ss_pred CccHHHHHHHHHHHHHHHHH----HHHHHHH--ccCHHHHHHHHhhhc----------------hhhHHHHHHHHHHHHH
Confidence 34544445555555544211 1110000 001223334333221 1223456777887777
Q ss_pred HHcCCCcchHHHH-----HHHHH-hhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCC-CC-ChhHHH
Q 001307 367 IALGGNTIVPVAS-----EQLPA-YLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFR-DP-HPRVRW 436 (1103)
Q Consensus 367 ~~~~~~~~~~~l~-----~~l~~-~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~-d~-~~~vr~ 436 (1103)
..-|.+.+-..+. +.+.. .++ +.++.+-..++.+++.++--.++.-...++ ..-...++.++ .| ...|++
T Consensus 313 alAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 313 ALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred HHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHH
Confidence 7667554433332 22222 122 456778888888888777655553333333 12233344443 23 567999
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHH
Q 001307 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1103)
Q Consensus 437 ~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1103)
.||+.+..++..-.. ....++..=++.|+..-.. .++.++..|-.+|..+
T Consensus 393 nac~~IRNiv~rs~~-~~~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAE-NRTILLANGIEKLIRTAKA-NHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHhhhh-ccchHHhccHHHHHHHHHh-cCccHHHHHHHHHHhc
Confidence 999999999876543 2255666666777776655 5777877777777665
No 353
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=49.82 E-value=1.2e+02 Score=29.12 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
+..|..+|..+.=.|.+.+++|.+.|..+..-+|.. -+++|.. -.++.||++|.-.|++ ++++
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~----aLeLL~~~f~~~~VR~yAV~~L~~------------~sd~ 108 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED----ALELLSPYFTNPVVRKYAVSRLKL------------ASDE 108 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCccCCCHHHHHHHHHHHHh------------CCHH
Confidence 344555555554345566777777777775533332 3444443 3468888888888876 3355
Q ss_pred HHHHHHHHHHHHHhhcc
Q 001307 100 TQSSLKSMLLQSIQLES 116 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~ 116 (1103)
......-+|+++|+-|.
T Consensus 109 eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 109 ELLLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56666677788887663
No 354
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=49.67 E-value=2.2e+02 Score=28.20 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcc--hHHHHHHHHHHHHhcCC
Q 001307 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENCT 493 (1103)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~--v~~~a~~al~~l~~~~~ 493 (1103)
+.+++..+++.....=.+||..|..++.++.....+.+ ++++ -.+.+...+.. +... .-..+..++..++.-+.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHhc
Confidence 34455555555555567899999999999884332211 2222 22344444333 1110 01223334444443333
Q ss_pred cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 494 ~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
+..|...++..+.......+..+...+..++-...... ..-..-+..++..+..+++.
T Consensus 81 ---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 81 ---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred ---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHH
Confidence 33678888888888777777776666666665555422 11112233444444454443
No 355
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=49.41 E-value=13 Score=22.84 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhh
Q 001307 434 VRWAAINAIGQLST 447 (1103)
Q Consensus 434 vr~~a~~~L~~l~~ 447 (1103)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999764
No 356
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=49.20 E-value=3e+02 Score=27.96 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001307 1059 ATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1102 (1103)
Q Consensus 1059 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1102 (1103)
.+.+++..+...+-.+-...++...+.+.+.|+...|..+.+++
T Consensus 169 l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly 212 (223)
T PF10441_consen 169 LPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLY 212 (223)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHH
Confidence 57889999999998888888877789999999999999887764
No 357
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=48.81 E-value=1.3e+02 Score=29.53 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
+..+..+|.++.=.+....+++.+.+..+..-+|.. -+++|.. -.++.+|++|.-.|++ ++++
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~----aL~LL~~~~~~~~Vr~yAV~~L~~------------~~d~ 106 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED----ALELLSPKFPDPFVRAYAVERLES------------ASDE 106 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH----HHHHhCccCCCHHHHHHHHHHHHh------------CCHH
Confidence 444555555444445555667777777665433332 2333432 3467888888877765 3455
Q ss_pred HHHHHHHHHHHHHhhc
Q 001307 100 TQSSLKSMLLQSIQLE 115 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e 115 (1103)
.......+|+++|+-|
T Consensus 107 ~l~~yLpQLVQaLr~E 122 (184)
T smart00145 107 ELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6666667777777765
No 358
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=48.75 E-value=5.2e+02 Score=30.53 Aligned_cols=180 Identities=12% Similarity=0.113 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHH-HHhcC
Q 001307 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN-FSENC 492 (1103)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~-l~~~~ 492 (1103)
..+..++..++..-......+|..|+.++..++....+.+....+....-..++.-.= .++.. .--+.++.+ +++-+
T Consensus 278 k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~-~~~~t-l~~i~Fl~~slvEL~ 355 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKF-VTVNT-LPLINFLQNSLVELL 355 (661)
T ss_pred HHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC-CCCcc-cchhHHHHHHHHHHh
Confidence 3445556655555555677899999999999998777654333333333333322111 01100 001111211 12222
Q ss_pred Ccccc------cCchHHHHHHHHHHhhcCChhHHHHH-----HHHHH----HHHHh--hhhhhHhhHhhhhHHHHHHHhh
Q 001307 493 TPEIL------TPYLDGIVSKLLVLLQNGKQMVQEGA-----LTALA----SVADS--SQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 493 ~~~~l------~~~l~~ll~~L~~~l~~~~~~v~~~a-----l~al~----~l~~~--~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
+-+.- --|+.++--.|-..+...+..-...+ +.|+- .++.. ......|....+++++..++.-
T Consensus 356 ~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirL 435 (661)
T KOG2256|consen 356 GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRL 435 (661)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhh
Confidence 21110 12445554455555544432221111 11221 12211 1123445545555555555555
Q ss_pred cCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH
Q 001307 556 ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1103)
Q Consensus 556 ~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 597 (1103)
...+....+|-+++..|-.++++.| .|.|..+-+++++-.
T Consensus 436 ipT~qy~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 436 IPTPQYYPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred cCcccchhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 4556677889888888888888776 477777766665543
No 359
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=4.4e+02 Score=29.58 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=42.8
Q ss_pred CCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc-HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhh
Q 001307 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1103)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (1103)
.+..+++.+++.+...-.++..-. ..++.+.++...- ...+.-.-...-..++..++|.+..||..+-.+|--++++
T Consensus 587 a~a~~i~tlieLL~a~QeDDEfV~--QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 587 APAKLIDTLIELLQACQEDDEFVV--QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred CccccHHHHHHHHHhhcccchHHH--HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 345667777766655433333322 2344444443321 1111001112234567788999999999999998877765
Q ss_pred h
Q 001307 449 L 449 (1103)
Q Consensus 449 ~ 449 (1103)
-
T Consensus 665 d 665 (791)
T KOG1222|consen 665 D 665 (791)
T ss_pred h
Confidence 3
No 360
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=46.48 E-value=4.4e+02 Score=29.09 Aligned_cols=224 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHh
Q 001307 74 RAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC 151 (1103)
Q Consensus 74 R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~--e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~ 151 (1103)
+..|..++.+.+.-.--+.+..=++..++.+|..|.+.... ..-+-+|..+..+.-...-..-+..+..+++..+-..
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSi 246 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSI 246 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHh
Q ss_pred hcCCCHhHHHHHHHHHHHhhhhhh--------------------hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 001307 152 VSSDSVKLQESAFLIFAQLSQYIG--------------------DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1103)
Q Consensus 152 ~~s~~~~~r~~al~~l~~l~~~~~--------------------~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1103)
++.-.-..++-.-..+..+.--+. +.-....+.++..+++..--. +..-+..-+.-+..
T Consensus 247 IngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~t-nS~KEVmFL~ElEE 325 (457)
T KOG2085|consen 247 INGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKT-NSSKEVMFLNELEE 325 (457)
T ss_pred cCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCC-CCcceeeeHhhHHH
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--HccchHHHHHhHHHHHHHHHHhhcCCCcchH
Q 001307 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL--AGTEPRFLRRQLVDVVGSMLQIAEAESLEEG 289 (1103)
Q Consensus 212 l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 289 (1103)
+++.+ ....|+.....+.+.+..++.++...+...|+..|..= .......-.-.++.+++.+...... +.+..
T Consensus 326 ILe~i----ep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~-hWN~~ 400 (457)
T KOG2085|consen 326 ILEVI----EPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKS-HWNQA 400 (457)
T ss_pred HHHhc----CHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 001307 290 TRHLAIEFVITLAE 303 (1103)
Q Consensus 290 ~r~~a~~~l~~l~~ 303 (1103)
+...++..+..+.+
T Consensus 401 i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 401 IHNLILNVLKTFME 414 (457)
T ss_pred HHHHHHHHHHHHHH
No 361
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=46.37 E-value=1.9e+02 Score=27.51 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=60.9
Q ss_pred HHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC---CCcchhHHHHHHhh
Q 001307 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLPFMFQCV 152 (1103)
Q Consensus 76 ~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~---~~w~~ll~~l~~~~ 152 (1103)
++..+|.+.++.+ +..+.+|.+++++.+....+..+ ....++++.+++.. |. +.|..+- .+++.+
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~-p~~vle~~~~l~-~~ld~l 104 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKA-PLTVLECSSKLK-ELLDYL 104 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH--HHHHS-S-HHHH-GGGGGT
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHC-hHHHHHHHHHHH-HHHHHH
Confidence 8889999988876 66777888888888876433323 34567888777642 20 2333222 122222
Q ss_pred cCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 001307 153 SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1103)
Q Consensus 153 ~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1103)
..=.. ..+..++..+..-+.-. ...-+.++-.+.+.+-+. +...|..|+..+
T Consensus 105 ~~lp~---~~a~~ll~Al~PLi~~s-~~lrd~lilvLRKamf~r-~~~~R~~Av~Gf 156 (158)
T PF14676_consen 105 SFLPG---DVAIGLLRALLPLIKFS-PSLRDSLILVLRKAMFSR-ELDARQMAVNGF 156 (158)
T ss_dssp TTS-H---HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTT-S-SHHHHHHHHHHH
T ss_pred HhCCH---HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHccc-cHHHHHHHHHHh
Confidence 22122 22444444443332211 113445666677777765 778888877654
No 362
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=46.00 E-value=3.1e+02 Score=27.13 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-CCcchhHHHHHHhhcCCCHh--HHHHHHHHHHHhhhhhhhh
Q 001307 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDSVK--LQESAFLIFAQLSQYIGDT 177 (1103)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~-~~w~~ll~~l~~~~~s~~~~--~r~~al~~l~~l~~~~~~~ 177 (1103)
...+-..+++... |.-..||..++.++..+.....+. ...| -.+.+...+..+... .-..+-..+..++.-..
T Consensus 5 ~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-- 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-- 80 (193)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--
Confidence 3344444555444 578889999999999988443231 1222 235555544433210 00112222222222211
Q ss_pred chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001307 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1103)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~ 257 (1103)
+..+...++..+....... +..+...+..+|..++..... .......++..++..+.... .+..+....++++..
T Consensus 81 ~~~y~~~ll~Glv~S~G~~-tesl~~~s~~AL~~~~~~~~~--~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l~tl~~ 155 (193)
T PF12612_consen 81 LPEYRYSLLSGLVVSAGGL-TESLVRASSAALLSYLRELSD--SPEELEQVLSDLLSILKENL--RNDRVVVPLLKTLDF 155 (193)
T ss_pred cHHHHHHHHhHHHhcCCCC-chhHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhC--CCCCeeecHHHHHHH
Confidence 1135556666666666665 667777787888877764311 22233444444444444322 234444556666666
Q ss_pred HHcc
Q 001307 258 LAGT 261 (1103)
Q Consensus 258 l~~~ 261 (1103)
+.+.
T Consensus 156 Ll~~ 159 (193)
T PF12612_consen 156 LLSS 159 (193)
T ss_pred HHhC
Confidence 5553
No 363
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.92 E-value=1.9e+02 Score=32.96 Aligned_cols=94 Identities=21% Similarity=0.127 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
-...+..|.+.+.+.++.++-.|+..|..++..||..|...+ ..|++-+.....+.. ....+|.+++..|-....+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~--~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKP--RDLKVREKILELIDTWQQA 113 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCC--cchhHHHHHHHHHHHHHHH
Confidence 347778888888888889999999999999999999886322 346665555554321 4567899999999999999
Q ss_pred hCh-hhhhhhHHHHHHHHH
Q 001307 579 VGK-DKFRDDAKQVMEVLM 596 (1103)
Q Consensus 579 ~~~-~~~~~~~~~i~~~l~ 596 (1103)
++. +...|....+...+.
T Consensus 114 f~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 114 FCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred ccCCCCcchhHHHHHHHHH
Confidence 874 444455555554443
No 364
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=45.05 E-value=4.8e+02 Score=29.08 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=80.6
Q ss_pred chhHHHHHHHHhC---CChHHHHHHHHHhcCCChHH--HHHHHHHHHHhhhc-CchHH----HHHHHHHHccCCChhHHH
Q 001307 6 THLQQSQLAVILG---PDSAPFETLISHLMSTSNEQ--RSEAELLFNLCKQQ-DPDSL----TLKLAHLLQRSPHPEARA 75 (1103)
Q Consensus 6 ~~~~~~~~~~~~~---~d~~~l~~ll~~~~s~d~~~--r~~Ae~~L~~~~~~-~p~~~----~~~L~~il~~~~~~~~R~ 75 (1103)
++.+-+.+|+=.- -+...|..+|.-+++|+.+. |-+|-..|.+.... |-+.. +..++.+......++..+
T Consensus 161 a~aV~~evAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR 240 (832)
T KOG3678|consen 161 AAAVGREVAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELAR 240 (832)
T ss_pred hhhhhHHHHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHH
Confidence 3455566654111 13456788899999998775 88888888875442 22221 123333333356677777
Q ss_pred HHHHHHHHhcccCCCCccccCCHHHHH-----HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCc----chhHH
Q 001307 76 MAAVLLRKLLTRDDSFLWPRLSLHTQS-----SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW----PELLP 146 (1103)
Q Consensus 76 ~a~~~L~~~i~~~~~~~w~~l~~~~~~-----~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w----~~ll~ 146 (1103)
..+-+|.+++++. ++.-. ...+.++-.... .++.+-+..+-+++.++-+-....+- ...-.
T Consensus 241 ~~~~il~~mFKHS---------eet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~E 310 (832)
T KOG3678|consen 241 SVAGILEHMFKHS---------EETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAE 310 (832)
T ss_pred HHHHHHHHHhhhh---------HHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhh
Confidence 7777788877653 11111 111122222333 45666666677777776542211000 00111
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 147 FMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 147 ~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
.|+-+..+.+.-.|-.|..+...++
T Consensus 311 WLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 311 WLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred hhhhhhcchHHHHHHHHHHHHhhhh
Confidence 2333444455556655555555444
No 365
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=44.90 E-value=1e+02 Score=30.89 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (1103)
+.+.+.+..+..+++.-.|++|+.+.-...+. .....+...+...+.|++..|+.+..|+|..+++.-++.+ .
T Consensus 114 ~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V-~ 186 (208)
T cd07064 114 PEFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWV-R 186 (208)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHH-H
Q ss_pred hhhhh
Q 001307 456 QFHPQ 460 (1103)
Q Consensus 456 ~~~~~ 460 (1103)
.|+..
T Consensus 187 ~fl~~ 191 (208)
T cd07064 187 DFVAA 191 (208)
T ss_pred HHHHH
No 366
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.62 E-value=8.5e+02 Score=31.82 Aligned_cols=152 Identities=10% Similarity=0.161 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHhcccCC--CCcchhHHHHHHhhcCC---CHhHHHHHHHHHHHhhhhhhhhchh-hHHHHHHHHH
Q 001307 117 AKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFL 190 (1103)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~~~s~---~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~ 190 (1103)
-.++|...-.++-.+....+.. ..|+.+++.+-...... +...-..|+..|..++..+-..+.. .+..++..+.
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 4445544334444333322111 24999888887666554 3455567888888887764333221 3444555555
Q ss_pred HhhCCCCChHHHHHHHHHHHHHHHhcCC----c------------------chHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001307 191 NCLTNSNNPDVKIAALNAVINFIQCLTS----S------------------ADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1103)
Q Consensus 191 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~------------------~~~~~~~~~ip~ll~~l~~~l~~~~~~~~ 248 (1103)
..-....+..+...|+..+-.+-.++.. . .+......++=.++..+..+..++.+++|
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVR 1014 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVR 1014 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHh
Confidence 4444434566666666555444333211 0 01112234455667777888888888999
Q ss_pred HHHHHHHHHHHccchHHHHH
Q 001307 249 QEALELLIELAGTEPRFLRR 268 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~ 268 (1103)
..|+++|-.+...++..+.+
T Consensus 1015 ngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1015 NGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred hhHHHHHHHHHhhhcccCCh
Confidence 99999999888877655554
No 367
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.32 E-value=2.5e+02 Score=32.03 Aligned_cols=87 Identities=9% Similarity=0.169 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCC-CCcchHHHHHHHHHHHHhcCCc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
++.+..|.+.+++.++.|+.-|+..|..+.+.|+..|.... -..+++.+++..... ....||.+++..|...-+.++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 36778888899999999999999999999999988773222 356777788888774 4568999999999999888775
Q ss_pred ccccCchHHHH
Q 001307 495 EILTPYLDGIV 505 (1103)
Q Consensus 495 ~~l~~~l~~ll 505 (1103)
. ..|++...
T Consensus 117 ~--~~~~~~~~ 125 (470)
T KOG1087|consen 117 P--DGYLPDYY 125 (470)
T ss_pred C--CCcchhHH
Confidence 2 24555443
No 368
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=44.01 E-value=1.5e+02 Score=32.05 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhch
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
..+..+...+++.++.+-.-|+..+++++.+|++.+...+. .+...+...+. ..++.|+......+...++.++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 34555666777788888888999999999999986654332 34455555555 56888888877777777765543
No 369
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.14 E-value=6.7e+02 Score=30.24 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=74.9
Q ss_pred hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001307 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1103)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l 255 (1103)
..+...+..+++.+.....++ -..|+..+++.+..++..-+. .-. .++..+...+.+++..+...+...|
T Consensus 296 ~~LK~ly~rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kPE-----qE~----~LL~~lVNKlGDpqnKiaskAsylL 365 (988)
T KOG2038|consen 296 HELKILYFRFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKPE-----QEN----NLLVLLVNKLGDPQNKIASKASYLL 365 (988)
T ss_pred HHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCcH-----HHH----HHHHHHHHhcCCcchhhhhhHHHHH
Confidence 334445666777777777776 889999999999998875421 112 3556666677778888888888888
Q ss_pred HHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001307 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 256 ~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
..|...+|..=.-.+.++-.+++. ++.+......|+.+|..+.-
T Consensus 366 ~~L~~~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 366 EGLLAKHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHHHhhCCcceeehHHHHHHHHcc----cCccccceeehhhhhhhhHh
Confidence 888887775333334444444432 34455556677777776654
No 370
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=42.80 E-value=59 Score=27.34 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
..|.++...|+.+...++-.+ ..|++.++..|.+..++ ...++..+-.+|..|-+.-.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~v-P~w~P~~l~~La~~~~~--~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDV-PPWMPEVLEELARHAND--PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--S-S-HHHHHHHHHHTTSSS---SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHhCc
Confidence 357788899999998887766 67999999999888887 45688889999999976654
No 371
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=42.69 E-value=1.8e+02 Score=25.73 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHH
Q 001307 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1103)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L 508 (1103)
.+.+.|...+.+++.. ..+...++..+.+.+.. ..+.-+..+...+..++.+++...-..+...+.+.+
T Consensus 16 ~S~~~I~~lt~~a~~~----------~~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f 84 (114)
T cd03562 16 NSQPSIQTLTKLAIEN----------RKHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLF 84 (114)
T ss_pred ccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3455566665555543 24566788888888777 566777889999999998876542111222223333
Q ss_pred HHHhhcCChhHHHH
Q 001307 509 LVLLQNGKQMVQEG 522 (1103)
Q Consensus 509 ~~~l~~~~~~v~~~ 522 (1103)
.......++.+|..
T Consensus 85 ~~~~~~~~~~~r~k 98 (114)
T cd03562 85 LDAYEKVDEKTRKK 98 (114)
T ss_pred HHHHHhCCHHHHHH
Confidence 33444445555543
No 372
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=42.69 E-value=6.9e+02 Score=30.19 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHccchHH
Q 001307 190 LNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA----TAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~----~~~~~~~~l~~l~~~~~~~ 265 (1103)
.+.|..+ +.++-..+++.+..+--.-.........-.+....+..++.++...+.. ....+...|..++...+..
T Consensus 316 ~~lL~~~-~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a 394 (696)
T PF14838_consen 316 AQLLLHS-DPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAA 394 (696)
T ss_pred HHHHcCC-ChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchH
Confidence 3334444 6677766766554332111001122223333344555555555543322 2234555566666554444
Q ss_pred HHHhHHHHHHH
Q 001307 266 LRRQLVDVVGS 276 (1103)
Q Consensus 266 ~~~~~~~l~~~ 276 (1103)
..-.+..+++.
T Consensus 395 ~~~vLr~LlE~ 405 (696)
T PF14838_consen 395 RKAVLRELLEG 405 (696)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 373
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=42.57 E-value=4.1e+02 Score=27.55 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=48.4
Q ss_pred Ccch-hHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhhchhhH--HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 140 GWPE-LLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 140 ~w~~-ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
..|- +.|++-...++ +-+..|-.++.+++.+++....+...++ .+++|.++..+..+ +.-.+..|.-.+..++..
T Consensus 91 ~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 91 HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD 169 (262)
T ss_dssp TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS
T ss_pred CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc
Confidence 4444 45666444333 2367899999999999986544433322 46889999999886 777788888888877753
No 374
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=41.01 E-value=1.1e+02 Score=28.18 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=49.8
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc--ccCc
Q 001307 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LTPY 500 (1103)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~--l~~~ 500 (1103)
+++.|+-+...++.+|..+|.. ....+.+.+.++..+.+ ++-..|.....++..+++.+.... -.+|
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~----------~~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN----------RDMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc----------cccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 3445565666677888777744 23355677788888887 677788999999999988765433 3456
Q ss_pred hHHHHHHH
Q 001307 501 LDGIVSKL 508 (1103)
Q Consensus 501 l~~ll~~L 508 (1103)
...+-..|
T Consensus 82 v~~l~~dL 89 (139)
T PF12243_consen 82 VSMLQRDL 89 (139)
T ss_pred HHHHHHHH
Confidence 55443333
No 375
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.44 E-value=7e+02 Score=29.67 Aligned_cols=130 Identities=13% Similarity=0.160 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH------HHHHhHHHHHHHHHhcCCCCCh
Q 001307 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLSMVLNSFRDPHP 432 (1103)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~~~l~~i~~~l~~~l~d~~~ 432 (1103)
.-.+.+++...| .-++. =+..+..++.+.+...|.+.+.+.+.+++.... .....+..++..+...+.|.+|
T Consensus 283 slFl~kls~l~p-~i~lr-q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 283 SLFLNKLSELSP-GIMLR-QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHhhcCc-hHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 345556655443 22222 245567788899999999999999988776442 3334667788999999999999
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
.+|..|++.+..++..-. .+ ..--..+.....+.++| .+..||..|+..+..+.-..+
T Consensus 361 y~RtKalqv~~kifdl~s-k~-~~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNS-KT-VGRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHHHHHHHhCcc-cc-cchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999886432 22 23345788888999999 888999999999998875543
No 376
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=40.04 E-value=5.3e+02 Score=28.16 Aligned_cols=155 Identities=17% Similarity=0.265 Sum_probs=83.3
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh----hHHHHHHHHHHhhC----CCCC--------hHHHHHHHHH
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP----HLKHLHAVFLNCLT----NSNN--------PDVKIAALNA 208 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~----~~~~l~~~l~~~l~----~~~~--------~~vr~~a~~~ 208 (1103)
+..+...+++........++.++..++...+...+. .++--.+.+...+. .... +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 677777888887777778999999998854432211 11111122222221 1101 2899999999
Q ss_pred HHHHHHhcCCcchHhHHHhhHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHH-hH-HHHHHHHHHhh
Q 001307 209 VINFIQCLTSSADRDRFQDLLP--LMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRR-QL-VDVVGSMLQIA 281 (1103)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~ip--~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~-~~-~~l~~~l~~~~ 281 (1103)
+.+++...+. ....+++. .++..+...+..+.+++....+++|.+-+-..+ ...+- .+ ...+..+..+.
T Consensus 138 ~Lsfl~~~~~----~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDP----ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCH----HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh
Confidence 9998876532 11222221 235556666666677777778887775432221 11110 00 12233333333
Q ss_pred cCCC--cchHHHHHHHHHHHHHHH
Q 001307 282 EAES--LEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 282 ~~~~--~~~~~r~~a~~~l~~l~~ 303 (1103)
...+ ....++..+.+++..+|.
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhc
Confidence 2211 123677777777777775
No 377
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.12 E-value=5.5e+02 Score=28.05 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-cchHHHHHhHH------HHHHHHHHhhcCCCcc--------hHHHHHHHH
Q 001307 232 MMRTLTESLNNGNEATAQEALELLIELAG-TEPRFLRRQLV------DVVGSMLQIAEAESLE--------EGTRHLAIE 296 (1103)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~------~l~~~l~~~~~~~~~~--------~~~r~~a~~ 296 (1103)
-++.+...+++..+.....++..|.+++. ..+...+..+. ..++.++..-...... .++|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36677777888788888899999999998 43333333222 1222222111100001 289999999
Q ss_pred HHHHHHHh
Q 001307 297 FVITLAEA 304 (1103)
Q Consensus 297 ~l~~l~~~ 304 (1103)
+|.++.+.
T Consensus 137 F~Lsfl~~ 144 (330)
T PF11707_consen 137 FWLSFLSS 144 (330)
T ss_pred HHHHHHcc
Confidence 99999984
No 378
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=38.92 E-value=4.6e+02 Score=27.05 Aligned_cols=127 Identities=14% Similarity=0.277 Sum_probs=73.2
Q ss_pred hCCCCChHHHHHHHHHHHHHHHh----cCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc------
Q 001307 193 LTNSNNPDVKIAALNAVINFIQC----LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 262 (1103)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~------ 262 (1103)
++|+ ++.|...++.+...+... +......+..-..+-.+=+.+...+.++++.++..+++.+..++-..
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4565 888888888888776553 21111111111112223334445566788889988888776554211
Q ss_pred ------------------------hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001307 263 ------------------------PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1103)
Q Consensus 263 ------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1103)
+..+..--..++..++..+.....+...-..++..|..+++ ..| .+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak---~RP-------~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAK---QRP-------QF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHH---HSG-------GG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH---Hhh-------HH
Confidence 11233344567888888776554455666667777877777 333 57
Q ss_pred HHHHHHHHHHhh
Q 001307 319 INRLFAILMSML 330 (1103)
Q Consensus 319 ~~~l~~~l~~~l 330 (1103)
...+++.+..+-
T Consensus 151 ~~~Il~~ll~~~ 162 (239)
T PF11935_consen 151 MSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 788888887653
No 379
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=38.20 E-value=5.8e+02 Score=28.05 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
.-+.-|...+.+|...++. ..+.-++.-+.+.++.+..+|.+|+.-+..++.- ..+..+.+.|.++|++
T Consensus 39 k~k~lasq~ip~~fk~fp~-----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~qLLnk 107 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS-----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQLLNK 107 (460)
T ss_pred HHHHHHHHHHHHHHhhCch-----hhhHHHHhhhccccccchhhHHHHHhccchhccC------chhhhhHHHHHHHHHH
Confidence 3345566666666665542 2234445555666777777888777777766643 2333444444444433
Q ss_pred cC--------CcccchhhhHHHHHHHHHHHhhChhh
Q 001307 556 AT--------DKSNRMLRAKSMECISLVGMAVGKDK 583 (1103)
Q Consensus 556 ~~--------~~~~~~lr~~a~~~l~~i~~~~~~~~ 583 (1103)
.+ .-.+..+|.+++..+..=...++.+.
T Consensus 108 ~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~ 143 (460)
T KOG2213|consen 108 ASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEV 143 (460)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHH
Confidence 10 00133456666665554433344333
No 380
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=37.72 E-value=88 Score=30.67 Aligned_cols=80 Identities=24% Similarity=0.216 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
++..|..+|..+.-.+.+..+++.+.|..+..-+|.. -+++|.. -.++.||++|.-.|++ +++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~----AL~LL~~~f~~~~VR~yAv~~L~~------------~~d 106 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED----ALELLSPNFPDPFVRQYAVRRLES------------LSD 106 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH----HHHCTSTT---HHHHHHHHHHHCT------------S-H
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH----HHHHHHhhccHHHHHHHHHHHHHH------------cCc
Confidence 3455555566554455666667777776665533322 2344433 2347788888777754 345
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001307 99 HTQSSLKSMLLQSIQLE 115 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e 115 (1103)
+.......+|+++|.-|
T Consensus 107 ~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 107 EELLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHHHHheec
Confidence 66666667777777765
No 381
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=36.92 E-value=2.3e+02 Score=27.18 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
++..|..+|...-+-+.+...++.+.|..+..-+|... +++|.. =.++.+|++|.-.|++ ++.
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~A----LeLL~~~f~d~~VR~yAV~~L~~------------~~d 100 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIA----LELLLPKFPDQEVRAHAVQWLAR------------LSN 100 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHH----HHHcCCcCCChHHHHHHHHHHHh------------CCH
Confidence 34555566654432233445556666656554344332 233332 3446788888777765 335
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001307 99 HTQSSLKSMLLQSIQLE 115 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e 115 (1103)
+......-+|+++|+-|
T Consensus 101 deL~~yLpQLVQaLkyE 117 (169)
T cd00869 101 DELLDYLPQLVQALKFE 117 (169)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 55555666677777765
No 382
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=36.17 E-value=8e+02 Score=29.09 Aligned_cols=185 Identities=12% Similarity=0.185 Sum_probs=95.2
Q ss_pred hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh--cCC--h---hHHHHHHHHHH
Q 001307 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ--NGK--Q---MVQEGALTALA 528 (1103)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~--~~~--~---~v~~~al~al~ 528 (1103)
.....++..++..-.. +...+|..|.-++..++....+..+.+.+....-..+.--. +.+ + ..+..+...++
T Consensus 278 k~lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ 356 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLG 356 (661)
T ss_pred HHHHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhc
Confidence 3445555555555555 56788999999999998887766554444443333222111 001 1 22333323222
Q ss_pred HHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccc-hhhhHHHHHHHHHHH----hh-ChhhhhhhHHHHHHHHHHHhcC-
Q 001307 529 SVADSSQEHFQKYYDAVMPFLKAILVNATDKSNR-MLRAKSMECISLVGM----AV-GKDKFRDDAKQVMEVLMSLQGS- 601 (1103)
Q Consensus 529 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~lr~~a~~~l~~i~~----~~-~~~~~~~~~~~i~~~l~~l~~~- 601 (1103)
.=...+-..---|+.++--.|...+...+-++.. ..-.+-+.|+-..++ +. +.....|.+.+++++++....-
T Consensus 357 ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLi 436 (661)
T KOG2256|consen 357 LDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLI 436 (661)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhc
Confidence 2111111111235666666666666543221111 111223444433333 22 2455677777777776653221
Q ss_pred CCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHh
Q 001307 602 QMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1103)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~ 642 (1103)
.....-|+|-++++.+..++...| -|-|..|.+++.+-..
T Consensus 437 pT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 437 PTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLKSV 476 (661)
T ss_pred CcccchhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHHHh
Confidence 112234788899999999988866 4566666655555433
No 383
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=35.41 E-value=4e+02 Score=25.33 Aligned_cols=119 Identities=14% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCC-----hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHH
Q 001307 186 HAVFLNCLTNSNN-----PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN--EATAQEALELLIEL 258 (1103)
Q Consensus 186 ~~~l~~~l~~~~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~--~~~~~~~~~~l~~l 258 (1103)
+..+.+.+.+... ..+-..++.++..++++ ..-.+..+-+.+++.+....+... ..+.+.++..|-.+
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-----g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~ 87 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-----GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESI 87 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-----CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHH
Q ss_pred HccchHHHHHhHHHH-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001307 259 AGTEPRFLRRQLVDV-VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1103)
Q Consensus 259 ~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 314 (1103)
+...+........++ ++.++..+ ...+.+++..++..+.++.. +++...|+
T Consensus 88 Vl~S~~ly~~V~~evt~~~Li~hL--q~~~~~iq~naiaLinAL~~---kA~~~~r~ 139 (160)
T PF11841_consen 88 VLNSPKLYQLVEQEVTLESLIRHL--QVSNQEIQTNAIALINALFL---KADDSKRK 139 (160)
T ss_pred HhCCHHHHHHHhccCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHh---cCChHHHH
No 384
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=35.24 E-value=3.5e+02 Score=24.72 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=56.3
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcc-----hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP-----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~-----~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
+.|..-...-++.+-+.++ .+.+|...+..-.|. +.+..+...+..++....+.++..+..+|-.-... .
T Consensus 19 q~LV~efq~tt~~eakeqv---~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~--~ 93 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQV---TANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA--K 93 (173)
T ss_pred HHHHHHHHHhccHHHHHHH---HHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH--H
Confidence 4445555544566666654 444455444445775 44667777888888888888887777776432111 1
Q ss_pred hHHH--HHHHHHHhhCCCCChHHHHHHHHHHH
Q 001307 181 HLKH--LHAVFLNCLTNSNNPDVKIAALNAVI 210 (1103)
Q Consensus 181 ~~~~--l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1103)
++.. =+|.++..++++ ...+-.+|+.++.
T Consensus 94 ~I~ea~g~plii~~lssp-~e~tv~sa~~~l~ 124 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP-PEITVHSAALFLQ 124 (173)
T ss_pred HHHHhcCCceEEeecCCC-hHHHHHHHHHHHH
Confidence 1111 134556677776 5555555554443
No 385
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=34.49 E-value=8.2e+02 Score=28.74 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=54.1
Q ss_pred CCcchhHHHHHHhhc-CCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 139 NGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~-s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
..+|+++..+.+.+. +.++..-++.+..+...++.+|-.+. +...++.++...+.+ .++.|.+.++|+..++..
T Consensus 188 ~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s--~pd~r~~tl~CLtEi~~L 262 (1053)
T COG5101 188 IEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNS--MPDTRVATLSCLTEIVDL 262 (1053)
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHhh
Confidence 356777777777664 44667778888888888888765432 456677788777776 578899999999988764
No 386
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.42 E-value=2.7e+02 Score=27.15 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
..+..+...++.|+..+...-...-.--..+..+..+..++.. +++.+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4667788888999988776432211012367788999999988 88999999999988776
No 387
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=34.17 E-value=1.1e+02 Score=29.23 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcccCCCCc-----chhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch
Q 001307 124 LCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1103)
Q Consensus 124 ~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~ 179 (1103)
+++++..+....-+ ..| ..++|.+..+++|..+.....|+..+..+...+++.+.
T Consensus 46 lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 46 LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776632223 456 58999999999999999999999999999988776543
No 388
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=33.07 E-value=7.2e+02 Score=27.65 Aligned_cols=232 Identities=14% Similarity=0.155 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH----hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh
Q 001307 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR----QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1103)
Q Consensus 231 ~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 306 (1103)
.+.+.++..+-+++..+|..+++++.-++... ..+.. +++.++-..+ ......+.=|.+|+.++..+.+.++
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL---~~~~~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSL---DRDNKNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhh---cccCCChHHHHHHHHHHHHHHHhcC
Confidence 44444443333456888999999888777543 22222 2223332222 2222234459999999999998521
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchH-HHHHHHHHh
Q 001307 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP-VASEQLPAY 385 (1103)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~~ 385 (1103)
.+ +.++ ..++..++...... ++..+.++.+++..++-.-| +-+.. .-+..+.+.
T Consensus 101 -~~---~~~~---~~vvralvaiae~~-----------------~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 101 -GP---KEIP---RGVVRALVAIAEHE-----------------DDRLRRICLETLCELALLNP-ELVAECGGIRVLLRA 155 (371)
T ss_pred -Cc---ccCC---HHHHHHHHHHHhCC-----------------chHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHH
Confidence 22 1221 33333333332211 12244455555555543322 11000 011222222
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHH--HHHH--hHHHHHHHHHhc----CCCCCh-hHHHHHHHHHHHhhhhhchhHHhh
Q 001307 386 LAAPEWQKHHAALIALAQIAEGCAK--VMVK--NLEQVLSMVLNS----FRDPHP-RVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~--~~~~--~l~~i~~~l~~~----l~d~~~-~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
+.++....-.+.+.++-.+.+.... .+.+ .+..++..+... .++.+. ..-..+..++..+.+.-++-+.-.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 2223223444444555545444321 1111 233344333332 222221 123344455555444322211000
Q ss_pred hhh-hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC
Q 001307 457 FHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 457 ~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
..+ .-+..++..|.- +++++|......+-.+..--
T Consensus 236 ~~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred cCCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCC
Confidence 111 567778888887 78888888888877776543
No 389
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.54 E-value=3.7e+02 Score=24.97 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1103)
-+.+...+...|.++ +.+|+..|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~~-d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSR-DPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 456777888899997 999999999999876
No 390
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=32.21 E-value=1.4e+03 Score=30.80 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001307 389 PEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~ 466 (1103)
.+...|...+.-++.+.-+.+ +.+.++++.|...+...++ ++.|.||.+...++..+.-.+.|+=...+++.++..++
T Consensus 1499 ~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv 1578 (1749)
T KOG3613|consen 1499 QELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELV 1578 (1749)
T ss_pred HHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHH
Confidence 346777766666666554444 5778899999999999999 89999999999999888877765322445555555554
Q ss_pred hhc
Q 001307 467 GAM 469 (1103)
Q Consensus 467 ~~l 469 (1103)
..+
T Consensus 1579 ~vf 1581 (1749)
T KOG3613|consen 1579 QVF 1581 (1749)
T ss_pred HHH
Confidence 443
No 391
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=32.03 E-value=2.4e+02 Score=25.16 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
.+..|..+...|+....+++... .+...++..+.+.+.. ..+.-+......+..++.++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~----------~~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHA----------SHAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHhh
Confidence 34455566677888877777542 3445677777777666 3445556777777777776643
No 392
>PLN03205 ATR interacting protein; Provisional
Probab=31.63 E-value=7.2e+02 Score=27.20 Aligned_cols=206 Identities=13% Similarity=0.175 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh-------chhhHHHHHHHHHHhhC
Q 001307 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-------LTPHLKHLHAVFLNCLT 194 (1103)
Q Consensus 122 ~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-------l~~~~~~l~~~l~~~l~ 194 (1103)
.++.+.-..+.+..+..-....++..|..++.-.+......++++|..+.+++-.. .....-.++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 45556656555543332355788999999998888888888999999988875322 12244556666655433
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHccchH---------
Q 001307 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPR--------- 264 (1103)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~--------- 264 (1103)
..+...||..|+..+..++..-.....++.|.. ..+++.+.++++. ....+++.++..|--+..+ |+
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~ 458 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLH 458 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCC
Confidence 334789999999888877754332223333332 1344444444442 2334566666554322221 11
Q ss_pred ----------------HHHHhHHHHHHHHHHhh---cCCCcchHHHHHHHHHHHHHHHhhhccchh-----hhcchhhHH
Q 001307 265 ----------------FLRRQLVDVVGSMLQIA---EAESLEEGTRHLAIEFVITLAEARERAPGM-----MRKLPQFIN 320 (1103)
Q Consensus 265 ----------------~~~~~~~~l~~~l~~~~---~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-----~~~~~~~~~ 320 (1103)
.-..-+..+++.+-..+ .+...+-+++..++-++..++...+..-.. ...-.+|+.
T Consensus 459 ~e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLm 538 (652)
T PLN03205 459 EEKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLM 538 (652)
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHH
Confidence 11122334444444433 223345567777877777776632100000 011235777
Q ss_pred HHHHHHHHhh
Q 001307 321 RLFAILMSML 330 (1103)
Q Consensus 321 ~l~~~l~~~l 330 (1103)
-++..++.-|
T Consensus 539 LILqvLvSem 548 (652)
T PLN03205 539 LILHLLVAEI 548 (652)
T ss_pred HHHHHHHHHh
Confidence 7777766544
No 393
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=31.41 E-value=2.3e+02 Score=32.16 Aligned_cols=175 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhh-hHHhHHHHHHH-------------HHHHHHHHHHhhcC----
Q 001307 883 SSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK-YYETYLPFLLE-------------AAVYGLGVCAEFGG---- 944 (1103)
Q Consensus 883 ~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~-------------~a~~~lg~l~~~~~---- 944 (1103)
++.+..+.++......-..|++.+..=+..||..-.. .-+.++|.-++ +|+-|+-.+....+
T Consensus 1 mnklr~l~e~~qqt~gfalalg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQ 80 (589)
T PF11229_consen 1 MNKLRALTENNQQTSGFALALGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQ 80 (589)
T ss_pred CcHHHHHHHhCCCCchHHHHHHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceee
Q ss_pred --------CCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHH
Q 001307 945 --------SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEA 1016 (1103)
Q Consensus 945 --------~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~D~~e~ 1016 (1103)
..++..+.+++..+.++++... ......|++--||.+-..+-+.-.--.-+|.=++.||-+ .-.
T Consensus 81 lkse~~~ss~~q~~lnevir~ltqvis~sg-----~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~---S~i 152 (589)
T PF11229_consen 81 LKSEAIQSSQFQSRLNEVIRTLTQVISFSG-----VIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPES---SFI 152 (589)
T ss_pred ehhhcccCHHHHHHHHHHHHHHHHHHcCcc-----ccccccchHHHHHHHHHhhcccccCCCCCCCccccCcch---hHH
Q ss_pred HHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcC
Q 001307 1017 KIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC--GKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSL 1090 (1103)
Q Consensus 1017 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 1090 (1103)
+.+.+++..-=+++|..+ -|..+.+....+. +... +|||.+|..+++-|
T Consensus 153 Raai~f~i~~GkkGpe~v-------pp~lvkvvl~~ia~vgeS~------------------qyPPVNWaalLsPL 203 (589)
T PF11229_consen 153 RAAIDFLIEAGKKGPESV-------PPSLVKVVLKPIATVGESY------------------QYPPVNWAALLSPL 203 (589)
T ss_pred HHHHHHHHHccccCCccC-------CHHHHHHHHHHhhhcCCCC------------------CCCCccHHHHhhHH
No 394
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=31.34 E-value=55 Score=20.50 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHH
Q 001307 391 WQKHHAALIALAQI 404 (1103)
Q Consensus 391 ~~~r~aal~~l~~l 404 (1103)
|.+|+.+..+|+.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 67899999999987
No 395
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=30.61 E-value=1.1e+02 Score=21.86 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1103)
...+.+|+.+++.|.. .++..|..+..+|+.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~ 36 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES-REPSEREQLLPVIATLLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHC
Confidence 3568899999999997 457888888888887755
No 396
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=30.40 E-value=1.3e+03 Score=29.95 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhh-----cchhhHHHHH
Q 001307 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR-----KLPQFINRLF 323 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~-----~~~~~~~~l~ 323 (1103)
+-++-.|.+++-.....+..+++.++...+-.+ .+..+-++..|-++|..++.. -.|.... ....--..-+
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~l--DH~~~~V~e~a~~lL~~Li~~--l~~~~~~l~e~~~s~~~~~~~i 1009 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLL--DHYTPLVQEQARELLVNLIHS--LAPSKLELPEVDDSDSEQKQSI 1009 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcc--cCCChHHHHHHHHHHHHHHHH--HhccccccccccccchhhHHHH
Q ss_pred HHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001307 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQ 403 (1103)
Q Consensus 324 ~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~ 403 (1103)
..++..+...+...-|..+|......+..++..........+........+-..--..-.++. ..-..|+.|+..+..
T Consensus 1010 ~~li~~l~~~~~~~lW~yeD~~~~~~~~~s~~~l~~lv~~vv~~~~~~~~L~~~W~~~AL~WA--TsC~vRHlAcRSfQI 1087 (1120)
T PF14228_consen 1010 KSLIEFLRSRDGSPLWSYEDSSGKRTEIPSPKQLSSLVRSVVEVFSFQPDLREQWGRVALNWA--TSCPVRHLACRSFQI 1087 (1120)
T ss_pred HHHHHHHHhcCCCccccCCCCCccCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hcCchHHHHHHHHHH
Q ss_pred HHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001307 404 IAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 404 l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1103)
+=--.+..-...+..++..+.+.+.|+.+.|
T Consensus 1088 FR~L~~~l~~~ml~dlL~rL~~~~~~~~~~v 1118 (1120)
T PF14228_consen 1088 FRALLPSLDSDMLADLLARLSKTISDPSPEV 1118 (1120)
T ss_pred HhHhcCCCCHHHHHHHHHHHHHHhCCCcccc
No 397
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=29.78 E-value=6.4e+02 Score=25.99 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcch-------------------------HhHHHhhHHHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD-------------------------RDRFQDLLPLMMRTL 236 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------------------------~~~~~~~ip~ll~~l 236 (1103)
+..+-..+.+.+.+. ++.||..+++.+..++........ ...+..--..+++.|
T Consensus 41 ~~~lK~~Il~~~~~~-~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~L 119 (239)
T PF11935_consen 41 MNELKDRILSLWDSE-NPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRL 119 (239)
T ss_dssp HHHHHHHHHHGGGSS-SHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444555666667776 899999999999998865431100 000111111345555
Q ss_pred HHHHhCC--CHHHHHHHHHHHHHHHccchHHHHHhHHHHHH
Q 001307 237 TESLNNG--NEATAQEALELLIELAGTEPRFLRRQLVDVVG 275 (1103)
Q Consensus 237 ~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 275 (1103)
...+.++ ++.....++.+|..++...|.++...++.+..
T Consensus 120 l~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~ 160 (239)
T PF11935_consen 120 LDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLS 160 (239)
T ss_dssp HHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5555544 36677788899999998888776655554444
No 398
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=29.76 E-value=1.3e+03 Score=29.40 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhhcCchH------------HHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHH
Q 001307 38 QRSEAELLFNLCKQQDPDS------------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLK 105 (1103)
Q Consensus 38 ~r~~Ae~~L~~~~~~~p~~------------~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik 105 (1103)
....+-..|..+.+.+|+- ....+...+.....+.+.++|...+...-... ++-..+. ...+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a---~~~vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLA---TCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHH---hhhHH
Confidence 3444555566655556621 12445555556778889999987775543332 1222221 22355
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcch-----hHHHHHHhhcCCCHhHHHHHHHHHHHhhhh--hhhhc
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-----LLPFMFQCVSSDSVKLQESAFLIFAQLSQY--IGDTL 178 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~-----ll~~l~~~~~s~~~~~r~~al~~l~~l~~~--~~~~l 178 (1103)
..|++.|-+ -+..|..+-+++..+++. +.-.|.- ++-.+.-.+.+....+|..+..+|+.+.-. .++.+
T Consensus 1816 ~~LL~lLHS--~PS~R~~vL~vLYAL~S~--~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1816 TTLLTLLHS--QPSMRARVLDVLYALSSN--GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhcC--cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence 667777764 677888888888777653 2223321 222222234566778999999999988643 33333
Q ss_pred hhhHHHHH-HHHHHhhCCC
Q 001307 179 TPHLKHLH-AVFLNCLTNS 196 (1103)
Q Consensus 179 ~~~~~~l~-~~l~~~l~~~ 196 (1103)
.-.+-.++ ..|...+.|.
T Consensus 1892 ~ITL~kFLP~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLRDS 1910 (2235)
T ss_pred eeehHHhchHHHHHHHhcC
Confidence 22223333 3566777774
No 399
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=29.20 E-value=8e+02 Score=26.98 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHH--HHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchh-HHhhhhhhhHHH
Q 001307 388 APEWQKHHAALIALAQ--IAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD-LQNQFHPQVLPA 464 (1103)
Q Consensus 388 ~~~~~~r~aal~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~il~~ 464 (1103)
+.+-+.|.+++..+.. .++..++.+.+....+...+...++-+...-+..+...+|..+-..++- ....+.....|.
T Consensus 71 dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~ 150 (427)
T KOG2842|consen 71 DKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPF 150 (427)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchH
Confidence 4567788888876654 3466778888888888899999999887777766666677666555421 114556666666
Q ss_pred HHhhccCC-CCcchHHHHHHHHHHHH
Q 001307 465 LAGAMDDF-QNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 465 l~~~l~~~-~~~~v~~~a~~al~~l~ 489 (1103)
+...+.+. ..+..+..++.++..-+
T Consensus 151 ~~li~~d~s~sv~~r~~ca~sl~v~~ 176 (427)
T KOG2842|consen 151 LALILDDESASIKARSICATSLGTAC 176 (427)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHH
Confidence 66665551 23445566666655444
No 400
>PF14961 BROMI: Broad-minded protein
Probab=28.57 E-value=1.4e+03 Score=29.60 Aligned_cols=136 Identities=14% Similarity=0.214 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCCH-hHHHHHHHHHHHhhhhhhhhc-hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001307 145 LPFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTL-TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1103)
Q Consensus 145 l~~l~~~~~s~~~-~~r~~al~~l~~l~~~~~~~l-~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1103)
+..+.+.+....+ ++|..|+..|..+... +.+ .+..+.+..-+..+|.|+ ++.+...+++.....+...+-...+
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~S--DVls~E~W~~L~~~L~~~LsDp-D~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPS--DVLSCESWSVLRENLTDALSDP-DPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChh--hccccccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCchhhhH
Confidence 3444555544443 7888888887766543 111 136788888999999998 9999999999998887764333334
Q ss_pred hHHHhhHHHHHHHHHHH----------Hh--CCCHHHHHHHHHHHHHHHccchH----HHHHhHHHHHHHHHHhhcC
Q 001307 223 DRFQDLLPLMMRTLTES----------LN--NGNEATAQEALELLIELAGTEPR----FLRRQLVDVVGSMLQIAEA 283 (1103)
Q Consensus 223 ~~~~~~ip~ll~~l~~~----------l~--~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~~~~ 283 (1103)
+.|..++..+-..+... ++ ..+-......+..+.++-+..|+ +-.+++.++++..+.++..
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 44554443332222110 00 01112233456666666555554 3357788899888888754
No 401
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=28.37 E-value=1.3e+03 Score=28.99 Aligned_cols=464 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhc--CchHHHHHHHHHHcc----CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHH
Q 001307 37 EQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQ 110 (1103)
Q Consensus 37 ~~r~~Ae~~L~~~~~~--~p~~~~~~L~~il~~----~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~ 110 (1103)
+.|.+--.++.+..+. .-+..+..|++...+ +.+.+.|+.+.-++|+.+... .+....+|..++.
T Consensus 42 ~~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ---------~~~l~I~R~~FF~ 112 (1697)
T KOG3687|consen 42 NNRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQ---------GERLGILRALFFK 112 (1697)
T ss_pred HHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q ss_pred HHhhcchhhHHHHHHHHHHHHHhcccCCCCcch-hHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHH
Q 001307 111 SIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVF 189 (1103)
Q Consensus 111 ~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l 189 (1103)
.+.+.+..+--+..-+.+..+-..--.-....+ +=+++.+++... .-.--+.++..+.+.-+..+..++-.++-.-
T Consensus 113 vI~~~p~~edL~~rLe~L~~LTDnG~~It~~Ee~iG~f~l~W~~~~---l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~ 189 (1697)
T KOG3687|consen 113 VIKDYPSNEDLHERLEVLKALTDNGRHITYLEEELGDFVLQWMDVG---LSSEFLLVLVNLVKFNSCYLDEYIARLMVQM 189 (1697)
T ss_pred HHhcCcchHHHHHHHHHHHHHhhCCccccchHHHHHHHHHHHHHhh---cccHHHHHHHHHHHhcccchhHHHHHHHHHH
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc-------
Q 001307 190 LNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------- 262 (1103)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~------- 262 (1103)
.=.+..-...+|-...+..+-..+.+. ... .+-+|.++..++...+ -......+++.+..+...+
T Consensus 190 ~c~lc~~t~~~i~~~~l~~l~~v~~y~----~~P--~e~lpQ~I~tlcrt~n--v~~~C~~~~k~m~nllgthlg~~~~~ 261 (1697)
T KOG3687|consen 190 ICLLCVRTASSVDIEVLQVLDAVVCYN----CLP--AESLPQFIVTLCRTIN--VKELCEPCWKLMRNLLGTHLGHSAIY 261 (1697)
T ss_pred HHHHHHhhccccchhhhhhhhhheeee----ecc--cchHHHHHHHHhcccc--hhhcCchHHHHHHhhhhcccchHHHH
Q ss_pred --------hHHHHH--------------------------hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhcc
Q 001307 263 --------PRFLRR--------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1103)
Q Consensus 263 --------~~~~~~--------------------------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 308 (1103)
...+.. +...+++.++..+ .+...-++...+-.+..++..++..
T Consensus 262 ~mc~~~~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~--DS~~~iV~yeVIlsi~~~i~k~~l~ 339 (1697)
T KOG3687|consen 262 NMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAM--DSPNEVVSYEVILSITRLIKKYELQ 339 (1697)
T ss_pred HHHhhhhhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHh--cCccceEEEEEeehhhHHHHHHHHH
Q ss_pred chhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcC
Q 001307 309 PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA 388 (1103)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~ 388 (1103)
...+. .+-.++..++..+.+.+ +......-...++.+.+.+..+++....-..+.-.-.-
T Consensus 340 ~~~wD----~il~i~S~~vS~~~Y~~----------------~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ 399 (1697)
T KOG3687|consen 340 VVAWD----ILLNIISRLLSQLQYLD----------------SPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERC 399 (1697)
T ss_pred HHHHH----HHHHHHHHHHHHhhhhc----------------chhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001307 389 PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1103)
.+-+.-...+..+..=+......-..-++.+-..+....+ +.+..||-.....+..+..........+.+..++=..+.
T Consensus 400 ad~rpe~sVlnli~Yr~~~V~A~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~ls 479 (1697)
T KOG3687|consen 400 ADQRPESSVLNLISYRAQSVHAARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLS 479 (1697)
T ss_pred hhcCchHHHHHHHHHhhhccCcCCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeec
Q ss_pred hccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhH
Q 001307 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMP 547 (1103)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~ 547 (1103)
.+.-.++.+||..+..+|.+++++|... .-.-+-.+++.+++.-.++.+.+-+..+.+.. ..+...+..+..
T Consensus 480 hi~L~~~~qvr~l~~~~l~N~a~~C~t~-~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~-------a~~~dI~~aVlg 551 (1697)
T KOG3687|consen 480 HIPLDKDHQVRKLATQLLVNLAEGCHTH-HFNSLLDIIEAVMARSLSPPPELEERDVAAYS-------ASLEDIKTAVLG 551 (1697)
T ss_pred cccccchhHHHHHHHHHHHHHHhhcchh-cchhHHHHHHHHHhcccCCCcchhhhhhhhhh-------hHHHHHHHHHHH
Q ss_pred HHH
Q 001307 548 FLK 550 (1103)
Q Consensus 548 ~l~ 550 (1103)
++.
T Consensus 552 ll~ 554 (1697)
T KOG3687|consen 552 LLV 554 (1697)
T ss_pred HHH
No 402
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.97 E-value=4.7e+02 Score=23.56 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhh---cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc--C--CCC
Q 001307 358 GQECLDRLAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS--F--RDP 430 (1103)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~--l--~d~ 430 (1103)
....+..++...-...-...++..+...+ ...+|+...=|+..|..+....++.+...+..-...|... + .|+
T Consensus 20 ~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~ 99 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDP 99 (125)
T ss_dssp -HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBT
T ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCC
Confidence 34556666655432355666778887777 5678999999999999998877765555554333333222 1 122
Q ss_pred -----ChhHHHHHHHHHHHh
Q 001307 431 -----HPRVRWAAINAIGQL 445 (1103)
Q Consensus 431 -----~~~vr~~a~~~L~~l 445 (1103)
...||..|-.++.-+
T Consensus 100 ~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 100 KGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp TSTBHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHh
Confidence 124777776665443
No 403
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=25.99 E-value=1.3e+03 Score=28.44 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=52.8
Q ss_pred hCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001307 241 NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1103)
Q Consensus 241 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1103)
.........-+++++..++..+.+.+..+...++..+..++++. .++.+..+.+.+..++...+..|...+....|+.
T Consensus 66 ~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~--~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~ 143 (819)
T KOG1877|consen 66 RRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN--NDEMQILGTNSFVKFANIEEDGPSYHRNYDFFIS 143 (819)
T ss_pred HhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCceeeehhhHHHHHHhhcccCchhhhhhHHHHH
Confidence 33444444556666666666555555444445555555555543 6777888889999888766566665565555666
Q ss_pred HHHHHHH
Q 001307 321 RLFAILM 327 (1103)
Q Consensus 321 ~l~~~l~ 327 (1103)
++.+.+.
T Consensus 144 kf~~l~h 150 (819)
T KOG1877|consen 144 KFSSLCH 150 (819)
T ss_pred HHHHHhh
Confidence 6666553
No 404
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.58 E-value=4.8e+02 Score=24.80 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001307 164 FLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1103)
Q Consensus 164 l~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~ 243 (1103)
..+|+.++...+-.+.++...+...+- .+..- +.++...-++++.-++..- ..+-..++-++...+-+.
T Consensus 76 idlL~~lv~~~p~~vle~~~~l~~~ld-~l~~l-p~~~a~~ll~Al~PLi~~s---------~~lrd~lilvLRKamf~r 144 (158)
T PF14676_consen 76 IDLLSELVRKAPLTVLECSSKLKELLD-YLSFL-PGDVAIGLLRALLPLIKFS---------PSLRDSLILVLRKAMFSR 144 (158)
T ss_dssp HHHHHHHHHH-HHHHS-S-HHHHGGGG-GTTTS--HHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHccc
Confidence 467777777666555555555543333 23332 4566556666666666431 223336777788877778
Q ss_pred CHHHHHHHHHHHH
Q 001307 244 NEATAQEALELLI 256 (1103)
Q Consensus 244 ~~~~~~~~~~~l~ 256 (1103)
+.+.|..|+..|.
T Consensus 145 ~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 145 ELDARQMAVNGFL 157 (158)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc
Confidence 8888888877654
No 405
>PF14961 BROMI: Broad-minded protein
Probab=25.42 E-value=2e+02 Score=36.44 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccc-CCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh
Q 001307 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL-PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1103)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~-~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 177 (1103)
++++ +.+++.|......+||..+.+.+..+--.+. ....|+.+-..|...+.++++...+.++..........+-.
T Consensus 160 qe~l-q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 160 QEQL-QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHH-HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 3444 5677778777788999998887765432222 23599999999999999999999999999988888766544
No 406
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.61 E-value=8.8e+02 Score=25.91 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCChh-HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHh
Q 001307 418 QVLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~-vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
.++..+...++..++. .-..||.-++++.+..+.....-.--..=..++..+++ ++++|+-.|..++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh-~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINH-DDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcC-CCchhhHHHHHHHHHHHh
Confidence 4566666666665555 44567777888887665432111112334556777888 899999999999887653
No 407
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=24.54 E-value=5.6e+02 Score=24.86 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCchHHHHHHHHHHc-c-CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcc
Q 001307 39 RSEAELLFNLCKQQDPDSLTLKLAHLLQ-R-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES 116 (1103)
Q Consensus 39 r~~Ae~~L~~~~~~~p~~~~~~L~~il~-~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~ 116 (1103)
..++.+.|..+..-+|... ++++. . ..++.+|++|.-.|++ .+.+..-....+|+|+|.-|.
T Consensus 55 ~~~~l~~Ll~W~pi~p~~A----Lell~~~y~~~~~Vr~yAvr~L~~------------~~~e~l~~YlpQLVQaLryd~ 118 (175)
T cd00871 55 NSPDLKYLLYWAPVSPVQA----LSLFTPQYPGHPLVLQYAVRVLES------------YPVETVFFYIPQIVQALRYDK 118 (175)
T ss_pred HHHHHHHHcCCCCCCHHHH----HHHhCcccCCCHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHhccc
Confidence 3344455555554344332 23332 2 4478899999988876 346667777778889888775
Q ss_pred hhhHHH
Q 001307 117 AKSISK 122 (1103)
Q Consensus 117 ~~~vr~ 122 (1103)
...+.+
T Consensus 119 ~~~l~~ 124 (175)
T cd00871 119 MGYVEE 124 (175)
T ss_pred cchHHH
Confidence 544443
No 408
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.37 E-value=1.1e+03 Score=27.12 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCCh--hHHHHHHHHHHH
Q 001307 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP--RVRWAAINAIGQ 444 (1103)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~L~~ 444 (1103)
.|..+..+.+++++++.+.+-+|+..++....+. +-++++..+.+...+.+. .+-.-|..+||.
T Consensus 448 ~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt------~~eevl~lL~Pi~~std~pie~~~~asltLg~ 513 (881)
T COG5110 448 RPPALALLSNYLQSSSSKHVIAAILGLGAAFSGT------QAEEVLELLQPIMFSTDSPIEVVFFASLTLGS 513 (881)
T ss_pred cchHHHHHHHhccCCchHHHHHHHhhhHHhhcCC------cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhh
Confidence 4667888899999999999999999999887664 334555666665555544 344444445554
No 409
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.28 E-value=2.9e+02 Score=27.54 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=34.9
Q ss_pred HHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhH--HhHHHHHHH
Q 001307 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLE 930 (1103)
Q Consensus 882 l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~ 930 (1103)
+.|++...-..+.-...|..+++++|.+++...+.+..++ ..++|.+++
T Consensus 146 lypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 146 LYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred eHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 5666655433333456799999999999999888777643 577887665
No 410
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=24.12 E-value=1.2e+03 Score=27.48 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred HHHHHHHhcCC----CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 418 QVLSMVLNSFR----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 418 ~i~~~l~~~l~----d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
+++..++..++ ...+.++......++-++.. ...+..+.+.+++-.+...+...+...++-..+..++.+.+..-
T Consensus 434 ~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~-~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i 512 (559)
T PF14868_consen 434 EIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFF-IQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFI 512 (559)
T ss_pred HHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccC
Confidence 34444444442 23455566555554433322 22222345667777777777543555688888888888876654
Q ss_pred ccccc-CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 494 PEILT-PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 494 ~~~l~-~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
+...+ +..+.+......++.+.+.-++..|+++++.+|...
T Consensus 513 ~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 513 PESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred CccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 43333 456666666666788899999999999999998754
No 411
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=24.07 E-value=1.3e+02 Score=24.06 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=27.4
Q ss_pred hHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh
Q 001307 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1103)
Q Consensus 144 ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~ 174 (1103)
-++.++.+..|..+.+|..|+.+|+.|+...
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999988654
No 412
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=23.88 E-value=3.5e+02 Score=25.45 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001307 1046 VSVFAEILCGKDLA-TEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1102 (1103)
Q Consensus 1046 ~~~~~~~l~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1102 (1103)
...+..+|...+.. +..++.+...++-..-.++-...+.+++.+|+.+++..|++++
T Consensus 53 ~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYi 110 (152)
T PF04699_consen 53 EEALKAALENPPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYI 110 (152)
T ss_dssp HHHHHHHTSS--TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHH
T ss_pred HHHHHHhccCCCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHH
Confidence 44555566422211 1255555555544444455566699999999999999999875
No 413
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=23.67 E-value=8.5e+02 Score=25.38 Aligned_cols=128 Identities=9% Similarity=0.132 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHHHhhh----hhhHhhHhhhhHHHHHHHhhcCCcccchhhhH-HH--HHHHHHHHhhChhhhhhhH
Q 001307 516 KQMVQEGALTALASVADSSQ----EHFQKYYDAVMPFLKAILVNATDKSNRMLRAK-SM--ECISLVGMAVGKDKFRDDA 588 (1103)
Q Consensus 516 ~~~v~~~al~al~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~-a~--~~l~~i~~~~~~~~~~~~~ 588 (1103)
+...-+.+..++..++..+- ..+...-...+..+...+......-....|.. .+ -..+.+...-+... +.+
T Consensus 110 HrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~--~ll 187 (255)
T PF10350_consen 110 HRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSR--PLL 187 (255)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcch--hHH
Confidence 34455666677777766554 23333333334444444433211100122322 22 22222222222122 677
Q ss_pred HHHHHHHHHHhcCCCCCC-----CchhhHHHHHHHHHHhH--hcCCcccchhhhhHHHHHhccc
Q 001307 589 KQVMEVLMSLQGSQMETD-----DPTTSYMLQAWARLCKC--LGQDFLPYMSVVMPPLLQSAQL 645 (1103)
Q Consensus 589 ~~i~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~--~~~~~~p~l~~i~~~ll~~~~~ 645 (1103)
+..|+.++++-....... +.-+-.+++++..+..- ++....||++..+...++.+..
T Consensus 188 ~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 188 HRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 788888888654332211 22344666676666543 6777889999988888887743
No 414
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=22.78 E-value=2.3e+02 Score=33.47 Aligned_cols=86 Identities=8% Similarity=0.064 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHH
Q 001307 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR 435 (1103)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr 435 (1103)
..|.++++.+....|-.++-..+-|.+.+.......-.-.-+-...+...+.....+..|+..++..|.... ...|.|-
T Consensus 360 SLasK~mde~mkl~Gm~YLh~tLkPvi~kI~eekK~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~-~~CP~vm 438 (800)
T KOG2059|consen 360 SLASKMMDEFMKLAGMHYLHVTLKPVIDKIFEEKKPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSS-TRCPTVM 438 (800)
T ss_pred chHHHHHHHHHHHhchHHHHHHhHHHHHHHHhhcCCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhcc-ccChHHH
Confidence 368889999998888666555666767666553321111111122333355555566677777777766543 2334444
Q ss_pred HHHHHHH
Q 001307 436 WAAINAI 442 (1103)
Q Consensus 436 ~~a~~~L 442 (1103)
...++-|
T Consensus 439 ~~~F~~L 445 (800)
T KOG2059|consen 439 CQIFYDL 445 (800)
T ss_pred HHHHHHH
Confidence 4444433
No 415
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.33 E-value=1.9e+03 Score=29.01 Aligned_cols=336 Identities=13% Similarity=0.158 Sum_probs=167.6
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHhcCC--cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH----
Q 001307 192 CLTNSNNPDVKIAALNAVINFIQCLTS--SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF---- 265 (1103)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~---- 265 (1103)
.|.++ +.+||....-|+..+...+.. +.......+++..++..+..+..-.+| -...-+..+-.++......
T Consensus 58 ~L~h~-d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp-~f~r~~~lletl~~~k~~l~~~l 135 (1266)
T KOG1525|consen 58 LLKHK-DKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESP-YFKRYFYLLETLAKVKFCLLMLL 135 (1266)
T ss_pred HhcCC-CcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCc-chhhHHHHHHHHHHhHHHheeec
Confidence 45666 899999999999999886532 112224455555566555443322222 1222223333332221100
Q ss_pred --HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001307 266 --LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1103)
Q Consensus 266 --~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~ 343 (1103)
-...+.+++..++.++...+ ...+-. -+.++..+... ....-..++..++..+.....+
T Consensus 136 ~d~~e~~~~~f~~f~d~~~~~~-~~~v~~-~~~i~~~li~e----------~d~v~~e~L~~ll~~lv~~~~~------- 196 (1266)
T KOG1525|consen 136 EDCQELVHELFRTFFDLARKGH-PKKVFN-MLDIAIMLITE----------EDTVQSELLDVLLENLVKPGRD------- 196 (1266)
T ss_pred cchHHHHHHHHHHHHHHHhccc-cHHHHH-HHHHHHHHHHh----------hccchHHHHHHHHHHhccCCCC-------
Confidence 12234455555555553322 222221 23333333331 1112234555555544432211
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001307 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---EWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1103)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1103)
.-...+..|..++.+.+..+. +.+-.++...+.-. --..+.-....+..+-...+ ..+-.++
T Consensus 197 ------~~~~a~~la~~li~~~a~~~~-----~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p----~ll~~vi 261 (1266)
T KOG1525|consen 197 ------TIKEADKLASDLIERCADNLE-----DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAP----QLLLAVI 261 (1266)
T ss_pred ------ccHHHHHHHHHHHHHhhhhhc-----hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhH----HHHHHHH
Confidence 012234556666666665443 33333333332210 01111111112222222222 2455677
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCc
Q 001307 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1103)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1103)
|.+..-|...+..+|..|...+|++...-...+ ...++.++...+..+.| .+..||..+........-..+ + .
T Consensus 262 p~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l-~~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~-~----~ 334 (1266)
T KOG1525|consen 262 PQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQL-SETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNP-S----I 334 (1266)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhcchhhh-cccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCc-h----h
Confidence 888888899999999999999999987665555 35678899999999999 889999998888877665522 1 1
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH-hhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ-KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
.......+.....+.++.+|-...-++..+.. ..|. .|.+.++..+...+ -+....+|..|+..++.+-.
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v---~~~~l~~~~~ll~~~~eR~----rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRTQVVIVACDV---MKFKLVYIPLLLKLVAERL----RDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhheeeEEEEEeeh---hHhhhhhhHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHH
Confidence 12222222222223344444332222211110 0111 12222333333332 23457789999999888765
No 416
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=22.18 E-value=4e+02 Score=23.65 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh---hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE---HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1103)
|+.+++..|..- +.++.-.+.++.....+++.-.. ....|...++..|..+=.+...++....|..|+-++
T Consensus 4 YlrDll~~L~~~--~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval 77 (114)
T PF10193_consen 4 YLRDLLEYLRSD--DEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL 77 (114)
T ss_dssp -HHHHHHHHT--------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhcC--cCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH
Confidence 555555554421 12466678899999999987655 677788888888777533222333445666554443
No 417
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.95 E-value=3.6e+02 Score=22.41 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=21.4
Q ss_pred hCCChHHHHHH---HHHhcCCC---hHHHHHHHHHHHHhhh
Q 001307 17 LGPDSAPFETL---ISHLMSTS---NEQRSEAELLFNLCKQ 51 (1103)
Q Consensus 17 ~~~d~~~l~~l---l~~~~s~d---~~~r~~Ae~~L~~~~~ 51 (1103)
+.|+.+.+.+. |..+.+.+ -++|+.|++....+.+
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 8 MNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred hhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 44555555554 44443332 2689999998777765
No 418
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=21.71 E-value=5.4e+02 Score=26.05 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhhh--hhHh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQE--HFQK 540 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~-~~v~~~al~al~~l~~~~~~--~~~~ 540 (1103)
.+.+.|.+ .++.+|.+|...|..++.......-..-+..|...|+-++=..+ +.+++....-|+.+...... ....
T Consensus 4 ~~~k~LAs-~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~ 82 (217)
T PF05997_consen 4 KFAKKLAS-NDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALL 82 (217)
T ss_pred HHHHHhhc-CChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHH
Q ss_pred hHhhhhHHHHH
Q 001307 541 YYDAVMPFLKA 551 (1103)
Q Consensus 541 ~~~~i~~~l~~ 551 (1103)
|+..++..+..
T Consensus 83 f~~~f~~tm~r 93 (217)
T PF05997_consen 83 FLKAFWETMRR 93 (217)
T ss_pred HHHHHHHHHHH
Done!