Query 001307
Match_columns 1103
No_of_seqs 390 out of 3072
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 21:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 1.3E-64 4.6E-69 635.1 78.9 810 22-1103 13-851 (852)
2 2bpt_A Importin beta-1 subunit 100.0 1.3E-55 4.5E-60 558.9 78.7 797 19-911 1-857 (861)
3 1qgr_A Protein (importin beta 100.0 7.2E-52 2.4E-56 525.7 73.3 789 23-943 2-873 (876)
4 1u6g_C TIP120 protein, CAND1; 100.0 1.3E-49 4.3E-54 519.6 70.7 937 17-1054 1-1154(1230)
5 1wa5_C Importin alpha RE-expor 100.0 2.8E-45 9.4E-50 463.4 75.4 598 19-640 2-687 (960)
6 2x19_B Importin-13; nuclear tr 100.0 2.4E-42 8.3E-47 440.4 63.8 711 19-800 21-849 (963)
7 2x1g_F Cadmus; transport prote 100.0 1.2E-42 4.2E-47 442.2 53.6 769 19-883 4-920 (971)
8 3m1i_C Exportin-1; heat repeat 100.0 1.9E-38 6.4E-43 404.3 74.6 721 18-800 12-881 (1049)
9 1u6g_C TIP120 protein, CAND1; 100.0 2.2E-37 7.7E-42 404.0 67.8 957 59-1098 9-1153(1230)
10 3ibv_A Exportin-T; karyopherin 100.0 1.2E-36 4.2E-41 375.9 57.1 777 18-885 2-941 (980)
11 1qgr_A Protein (importin beta 100.0 3E-35 1E-39 373.0 70.3 748 68-991 12-874 (876)
12 4hat_C Exportin-1; heat repeat 100.0 2.5E-34 8.6E-39 354.9 71.9 717 19-820 13-859 (1023)
13 4fdd_A Transportin-1; heat rep 100.0 1.1E-34 3.9E-39 363.6 68.8 671 32-801 58-788 (852)
14 2bpt_A Importin beta-1 subunit 100.0 5.7E-34 1.9E-38 360.6 75.5 755 68-941 16-857 (861)
15 1ibr_B P95, importin beta-1 su 100.0 2.1E-36 7E-41 353.4 32.7 430 23-470 2-461 (462)
16 3gjx_A Exportin-1; transport, 100.0 1.8E-30 6.3E-35 317.4 68.7 520 19-555 25-669 (1073)
17 1b3u_A Protein (protein phosph 100.0 1.4E-29 4.7E-34 305.5 45.6 572 106-795 13-585 (588)
18 1b3u_A Protein (protein phosph 100.0 9.1E-29 3.1E-33 298.4 46.2 553 19-642 7-566 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 5.1E-25 1.7E-29 280.5 52.1 514 22-555 11-682 (1204)
20 2x19_B Importin-13; nuclear tr 99.9 2.6E-17 8.9E-22 209.6 66.1 786 108-1099 29-927 (963)
21 1wa5_C Importin alpha RE-expor 99.9 2.7E-17 9.1E-22 207.8 62.5 695 21-821 34-869 (960)
22 2x1g_F Cadmus; transport prote 99.9 6.9E-18 2.3E-22 214.6 56.5 805 152-1098 16-938 (971)
23 1ibr_B P95, importin beta-1 su 99.8 2.3E-17 8E-22 191.8 33.8 406 107-553 5-460 (462)
24 2qk1_A Protein STU2; STU2P, XM 99.8 1E-18 3.6E-23 180.3 16.4 213 373-591 12-234 (249)
25 3m1i_C Exportin-1; heat repeat 99.8 7.7E-13 2.6E-17 168.6 72.3 243 391-643 427-697 (1049)
26 2jdq_A Importin alpha-1 subuni 99.8 7.8E-17 2.7E-21 186.6 31.4 369 139-536 13-394 (450)
27 2jdq_A Importin alpha-1 subuni 99.8 1.2E-16 4E-21 185.1 29.0 401 58-531 22-442 (450)
28 2vgl_B AP-2 complex subunit be 99.7 3.3E-15 1.1E-19 177.2 36.1 477 18-575 44-530 (591)
29 3now_A UNC-45 protein, SD10334 99.7 8E-13 2.8E-17 156.2 55.0 674 22-798 9-783 (810)
30 3now_A UNC-45 protein, SD10334 99.7 1.8E-12 6E-17 153.3 53.8 633 34-743 62-783 (810)
31 2qk2_A LP04448P; mini spindles 99.7 1.1E-16 3.9E-21 166.6 15.8 207 372-591 10-219 (242)
32 4hat_C Exportin-1; heat repeat 99.7 1.2E-10 4E-15 144.4 71.7 223 415-643 448-697 (1023)
33 3ibv_A Exportin-T; karyopherin 99.7 5.4E-12 1.8E-16 156.4 58.6 622 63-778 14-795 (980)
34 2vgl_B AP-2 complex subunit be 99.7 2.3E-14 7.8E-19 170.0 35.4 482 21-580 12-496 (591)
35 1wa5_B Importin alpha subunit; 99.7 4.1E-15 1.4E-19 175.2 28.7 403 58-533 89-511 (530)
36 1wa5_B Importin alpha subunit; 99.7 9.8E-15 3.3E-19 172.0 31.3 359 106-536 90-461 (530)
37 4b8j_A Importin subunit alpha- 99.7 1.9E-14 6.6E-19 169.6 33.1 359 186-580 76-446 (528)
38 1w63_A Adapter-related protein 99.7 3.2E-13 1.1E-17 160.5 40.4 488 24-625 36-543 (618)
39 4b8j_A Importin subunit alpha- 99.6 3.9E-14 1.3E-18 167.0 30.1 358 106-536 77-447 (528)
40 2z6g_A B-catenin; FULL-length, 99.6 4.2E-13 1.4E-17 163.9 38.8 512 59-626 118-667 (780)
41 3gjx_A Exportin-1; transport, 99.6 8.8E-10 3E-14 135.5 64.4 208 429-643 490-723 (1073)
42 2z6g_A B-catenin; FULL-length, 99.6 3.7E-13 1.3E-17 164.4 34.5 414 106-555 118-541 (780)
43 1w63_A Adapter-related protein 99.5 7.8E-12 2.7E-16 148.6 36.8 449 22-532 70-577 (618)
44 2z6h_A Catenin beta-1, beta-ca 99.5 1.4E-11 4.7E-16 148.5 38.4 477 105-624 16-529 (644)
45 2z6h_A Catenin beta-1, beta-ca 99.5 9.2E-12 3.2E-16 149.9 35.6 469 22-536 14-531 (644)
46 3tpo_A Importin subunit alpha- 99.5 1.4E-11 4.9E-16 144.2 34.3 367 141-535 74-452 (529)
47 3ul1_B Importin subunit alpha- 99.5 1.4E-11 4.9E-16 143.1 33.7 361 145-535 59-433 (510)
48 1jdh_A Beta-catenin; beta-cate 99.5 3.4E-12 1.1E-16 150.9 27.8 462 22-530 17-528 (529)
49 1jdh_A Beta-catenin; beta-cate 99.5 4.4E-11 1.5E-15 141.3 36.1 473 103-620 17-528 (529)
50 3tpo_A Importin subunit alpha- 99.5 4.1E-11 1.4E-15 140.3 34.8 361 186-578 78-450 (529)
51 3ul1_B Importin subunit alpha- 99.5 2.9E-11 1E-15 140.6 33.1 360 187-578 60-431 (510)
52 2vgl_A Adaptor protein complex 99.5 3.4E-10 1.1E-14 133.8 42.1 441 67-576 84-588 (621)
53 2vgl_A Adaptor protein complex 99.4 3.7E-10 1.3E-14 133.4 40.5 444 23-531 75-588 (621)
54 2qk2_A LP04448P; mini spindles 99.4 5E-12 1.7E-16 131.3 20.1 194 352-553 29-227 (242)
55 2qk1_A Protein STU2; STU2P, XM 99.4 3.9E-12 1.3E-16 131.1 13.9 191 354-545 32-234 (249)
56 2iw3_A Elongation factor 3A; a 99.1 1.3E-08 4.4E-13 122.2 29.6 302 239-578 22-328 (986)
57 4hxt_A De novo protein OR329; 99.1 2.7E-09 9.4E-14 111.8 21.5 243 234-541 5-250 (252)
58 4hxt_A De novo protein OR329; 99.1 2E-09 6.7E-14 112.9 20.1 243 379-631 4-250 (252)
59 3l6x_A Catenin delta-1; cateni 99.1 5.1E-08 1.8E-12 111.4 32.5 370 139-532 43-476 (584)
60 3a6p_A Exportin-5; exportin-5, 99.1 8.7E-06 3E-10 104.0 54.2 478 116-644 25-635 (1204)
61 1xm9_A Plakophilin 1; armadill 99.1 3.4E-08 1.2E-12 112.7 28.4 354 145-531 4-448 (457)
62 4db6_A Armadillo repeat protei 99.1 2.8E-09 9.7E-14 108.0 16.5 193 378-576 13-208 (210)
63 1oyz_A Hypothetical protein YI 99.0 1E-08 3.6E-13 109.1 20.9 253 233-572 25-277 (280)
64 3opb_A SWI5-dependent HO expre 99.0 2.8E-06 9.5E-11 98.6 40.8 460 116-623 145-684 (778)
65 4db8_A Armadillo-repeat protei 99.0 5.7E-09 1.9E-13 109.3 17.4 232 236-532 17-251 (252)
66 4db8_A Armadillo-repeat protei 99.0 4.9E-09 1.7E-13 109.8 16.0 234 379-621 14-250 (252)
67 1oyz_A Hypothetical protein YI 99.0 2.4E-08 8.2E-13 106.3 21.0 254 144-486 24-278 (280)
68 3opb_A SWI5-dependent HO expre 99.0 3E-06 1E-10 98.3 39.3 424 97-556 286-759 (778)
69 2iw3_A Elongation factor 3A; a 99.0 8.2E-07 2.8E-11 106.8 35.4 304 106-491 17-325 (986)
70 3nmz_A APC variant protein; pr 98.9 1.3E-07 4.3E-12 105.8 25.4 361 143-535 32-453 (458)
71 3l6x_A Catenin delta-1; cateni 98.9 7.9E-07 2.7E-11 101.7 30.3 361 106-490 51-476 (584)
72 3nmz_A APC variant protein; pr 98.9 2.1E-06 7.1E-11 96.0 32.9 385 18-493 28-453 (458)
73 1xm9_A Plakophilin 1; armadill 98.9 3.5E-07 1.2E-11 104.3 26.0 360 106-491 5-450 (457)
74 2db0_A 253AA long hypothetical 98.8 2.1E-06 7.1E-11 77.7 22.3 214 231-489 32-245 (253)
75 3ltm_A Alpha-REP4; protein eng 98.8 4.9E-07 1.7E-11 91.3 20.5 191 18-262 15-205 (211)
76 1xqr_A HSPBP1 protein; armadil 98.7 2.8E-07 9.5E-12 96.9 18.6 181 391-578 54-239 (296)
77 3ltj_A Alpharep-4; protein eng 98.7 2.1E-07 7.3E-12 93.1 17.1 188 372-620 9-196 (201)
78 1xqr_A HSPBP1 protein; armadil 98.7 2.9E-07 9.8E-12 96.8 18.5 152 380-535 84-241 (296)
79 3ltm_A Alpha-REP4; protein eng 98.7 1.1E-07 3.6E-12 96.3 14.8 186 377-623 19-204 (211)
80 4db6_A Armadillo repeat protei 98.7 1.1E-07 3.8E-12 96.1 12.8 154 378-532 55-209 (210)
81 3ltj_A Alpharep-4; protein eng 98.7 1.2E-06 4.2E-11 87.5 20.2 187 19-259 11-197 (201)
82 2db0_A 253AA long hypothetical 98.6 3.4E-05 1.2E-09 69.9 24.0 215 272-532 32-246 (253)
83 4gmo_A Putative uncharacterize 98.6 7.7E-05 2.6E-09 89.3 35.1 156 418-577 35-214 (684)
84 2of3_A ZYG-9; multifunctional 98.6 5.3E-06 1.8E-10 83.8 20.5 189 382-588 51-246 (266)
85 4ffb_C Protein STU2; tubulin f 98.5 2.2E-06 7.4E-11 90.5 17.3 188 382-580 14-215 (278)
86 4ady_A RPN2, 26S proteasome re 98.4 0.00062 2.1E-08 81.0 35.8 324 149-555 364-699 (963)
87 4ady_A RPN2, 26S proteasome re 98.4 0.00046 1.6E-08 82.1 34.3 328 121-531 375-718 (963)
88 3nmw_A APC variant protein; AR 98.3 5.1E-05 1.7E-09 82.0 23.0 273 158-493 47-337 (354)
89 3nmw_A APC variant protein; AR 98.3 2.1E-05 7.1E-10 85.1 18.9 223 287-536 97-338 (354)
90 3b2a_A TON_1937, putative unch 98.3 2.2E-05 7.7E-10 74.9 15.9 214 390-642 18-232 (265)
91 3tjz_B Coatomer subunit gamma; 98.2 1.6E-05 5.4E-10 84.7 16.0 301 119-484 43-347 (355)
92 2of3_A ZYG-9; multifunctional 98.2 3.3E-05 1.1E-09 78.0 16.0 163 378-553 88-257 (266)
93 4ffb_C Protein STU2; tubulin f 98.1 3.3E-05 1.1E-09 81.4 15.8 168 379-553 57-237 (278)
94 3b2a_A TON_1937, putative unch 98.1 0.00032 1.1E-08 67.1 20.0 184 378-577 34-218 (265)
95 1vsy_5 Proteasome activator BL 98.1 0.0017 5.9E-08 79.5 32.3 157 367-533 499-665 (997)
96 1te4_A Conserved protein MTH18 98.1 4E-07 1.4E-11 83.4 0.4 124 372-529 7-130 (131)
97 3tjz_B Coatomer subunit gamma; 98.0 0.00013 4.4E-09 77.7 17.0 288 94-442 59-348 (355)
98 3oc3_A Helicase MOT1, MOT1; re 98.0 3.8E-05 1.3E-09 82.8 12.5 160 353-531 243-403 (800)
99 3oc3_A Helicase MOT1, MOT1; re 97.8 6E-05 2E-09 81.3 10.9 206 68-302 185-403 (800)
100 3grl_A General vesicular trans 97.8 0.098 3.3E-06 59.3 43.0 215 22-263 21-244 (651)
101 1vsy_5 Proteasome activator BL 97.7 0.0023 7.9E-08 78.5 22.5 171 358-534 782-968 (997)
102 3tt9_A Plakophilin-2; cell adh 97.6 0.002 6.8E-08 64.3 17.5 174 379-555 10-205 (233)
103 1te4_A Conserved protein MTH18 97.5 0.00011 3.8E-09 66.9 6.1 86 380-487 45-130 (131)
104 4gmo_A Putative uncharacterize 97.5 0.1 3.4E-06 62.3 32.8 188 107-301 38-256 (684)
105 3grl_A General vesicular trans 97.4 0.048 1.6E-06 61.8 26.8 323 143-492 21-396 (651)
106 3tt9_A Plakophilin-2; cell adh 97.3 0.0018 6E-08 64.7 12.4 201 420-623 10-230 (233)
107 3l9t_A Putative uncharacterize 97.1 0.032 1.1E-06 54.3 18.2 143 375-537 69-212 (240)
108 3l9t_A Putative uncharacterize 96.4 0.33 1.1E-05 47.2 19.2 167 24-215 39-208 (240)
109 1vsy_4 Proteasome activator BL 96.1 0.77 2.6E-05 54.8 24.9 301 412-744 333-689 (799)
110 1upk_A MO25 protein; transfera 95.8 2.1 7E-05 44.2 28.6 189 107-304 82-284 (341)
111 4atg_A TAF6; transcription, TF 95.7 0.22 7.6E-06 47.2 14.4 128 410-555 7-142 (196)
112 3u0r_A Apoptosis inhibitor 5; 95.7 0.85 2.9E-05 49.3 20.3 126 355-497 45-170 (507)
113 3gs3_A Symplekin, LD45768P; he 94.9 3.6 0.00012 41.2 25.6 172 139-325 49-255 (257)
114 1vsy_4 Proteasome activator BL 94.8 5 0.00017 47.8 25.5 260 373-643 335-666 (799)
115 1w9c_A CRM1 protein, exportin 94.8 3.9 0.00013 42.2 21.1 111 517-630 43-159 (321)
116 4atg_A TAF6; transcription, TF 94.7 0.15 5.3E-06 48.3 9.8 128 359-488 26-160 (196)
117 3o2t_A Symplekin; heat repeat, 94.7 5.6 0.00019 42.4 25.4 176 139-329 59-272 (386)
118 3u0r_A Apoptosis inhibitor 5; 93.7 9.2 0.00032 41.5 34.8 186 68-281 39-224 (507)
119 3gs3_A Symplekin, LD45768P; he 93.3 7.4 0.00025 39.0 25.1 209 22-269 15-252 (257)
120 1ho8_A Vacuolar ATP synthase s 93.1 12 0.00041 40.9 28.9 354 53-447 75-476 (480)
121 3fga_B Serine/threonine-protei 92.0 12 0.0004 40.1 19.8 79 221-303 283-366 (403)
122 2npp_B PP2A, B subunit, serine 90.9 21 0.00071 38.9 22.3 94 204-303 303-399 (449)
123 2npp_B PP2A, B subunit, serine 89.3 28 0.00095 37.9 22.0 237 20-269 160-408 (449)
124 1x5b_A Signal transducing adap 88.4 4.2 0.00014 37.5 11.3 78 417-494 51-129 (163)
125 3ldz_A STAM-1, signal transduc 88.0 3 0.0001 37.4 9.9 78 417-495 41-119 (140)
126 3o2t_A Symplekin; heat repeat, 86.5 37 0.0013 36.2 23.7 172 373-553 59-273 (386)
127 1lsh_A Lipovitellin (LV-1N, LV 86.3 30 0.001 43.2 21.0 124 69-209 407-538 (1056)
128 1juq_A ADP-ribosylation factor 86.2 5.7 0.00019 37.0 10.9 78 417-494 49-132 (171)
129 1lsh_A Lipovitellin (LV-1N, LV 84.3 33 0.0011 42.8 20.0 55 117-171 408-468 (1056)
130 1lrv_A LRV, leucine-rich repea 84.2 0.34 1.2E-05 48.5 1.7 92 382-528 151-242 (244)
131 1w9c_A CRM1 protein, exportin 83.7 43 0.0015 34.5 21.1 83 389-471 134-226 (321)
132 3fga_B Serine/threonine-protei 83.0 53 0.0018 35.1 24.3 233 232-493 130-369 (403)
133 3ldz_A STAM-1, signal transduc 82.2 24 0.00082 31.4 12.9 91 501-595 40-132 (140)
134 2jak_A Serine/threonine-protei 82.0 36 0.0012 36.2 16.1 215 389-617 141-362 (392)
135 3dad_A FH1/FH2 domain-containi 81.4 26 0.00087 36.3 14.2 147 386-535 127-289 (339)
136 3g2s_A C-terminal fragment of 81.4 22 0.00077 32.0 12.3 94 485-580 32-129 (149)
137 3g2s_A C-terminal fragment of 79.4 7.4 0.00025 35.2 8.5 78 417-494 47-130 (149)
138 1x5b_A Signal transducing adap 79.1 17 0.00058 33.4 11.1 78 501-581 50-129 (163)
139 3zyq_A Hepatocyte growth facto 77.4 10 0.00035 37.3 9.6 79 417-495 44-123 (226)
140 1mhq_A ADP-ribosylation factor 76.6 29 0.00098 31.3 11.6 78 417-494 37-120 (148)
141 1juq_A ADP-ribosylation factor 75.0 30 0.001 32.1 11.5 92 502-596 49-144 (171)
142 3zyq_A Hepatocyte growth facto 73.2 32 0.0011 33.7 12.0 78 501-581 43-122 (226)
143 1lrv_A LRV, leucine-rich repea 72.8 1 3.6E-05 45.0 1.1 68 381-485 174-241 (244)
144 1dvp_A HRS, hepatocyte growth 70.8 15 0.00053 35.8 9.1 78 417-494 41-119 (220)
145 1dvp_A HRS, hepatocyte growth 69.3 35 0.0012 33.2 11.3 77 501-580 40-118 (220)
146 1upk_A MO25 protein; transfera 68.7 1.1E+02 0.0038 31.5 22.5 209 68-283 89-312 (341)
147 3dad_A FH1/FH2 domain-containi 68.5 1.1E+02 0.0039 31.5 17.4 143 152-303 127-286 (339)
148 3jxy_A Alkylpurine DNA glycosy 67.5 97 0.0033 30.4 15.1 154 36-215 41-196 (232)
149 1elk_A Target of MYB1; superhe 66.8 46 0.0016 30.3 10.7 78 417-494 52-134 (157)
150 2b6c_A Hypothetical protein EF 66.7 38 0.0013 33.0 11.0 140 380-542 58-198 (220)
151 1elk_A Target of MYB1; superhe 66.5 50 0.0017 30.0 10.9 79 501-580 51-133 (157)
152 4flb_A Regulation of nuclear P 65.4 31 0.0011 30.3 9.1 68 416-494 6-73 (132)
153 2b6c_A Hypothetical protein EF 63.7 1.1E+02 0.0038 29.6 15.4 154 36-215 35-189 (220)
154 1mhq_A ADP-ribosylation factor 63.5 52 0.0018 29.6 10.2 74 378-451 39-120 (148)
155 1vdy_A Hypothetical protein (R 62.6 19 0.00065 31.9 6.9 75 415-491 46-131 (140)
156 1sz9_A PCF11 protein; RNA poly 58.5 72 0.0024 28.5 10.2 91 429-530 22-112 (144)
157 2fv2_A RCD1 required for cell 56.0 1.6E+02 0.0055 29.0 19.7 167 21-215 2-175 (268)
158 1ho8_A Vacuolar ATP synthase s 52.0 2.7E+02 0.0092 30.5 27.2 58 430-490 417-476 (480)
159 2jak_A Serine/threonine-protei 51.1 2.5E+02 0.0085 29.8 18.1 154 94-256 184-363 (392)
160 1vdy_A Hypothetical protein (R 49.8 76 0.0026 28.0 8.6 75 373-447 45-130 (140)
161 2fv2_A RCD1 required for cell 49.1 1.4E+02 0.0048 29.4 11.0 127 860-989 76-225 (268)
162 3ebb_A Phospholipase A2-activa 49.0 1.7E+02 0.006 29.9 12.7 100 391-490 162-263 (304)
163 3qml_C Protein SLS1, nucleotid 46.2 2E+02 0.007 29.1 12.0 138 158-303 43-189 (315)
164 3qml_C Protein SLS1, nucleotid 45.8 2.1E+02 0.0073 29.0 12.0 206 416-631 24-256 (315)
165 4fu3_A Regulation of nuclear P 44.8 76 0.0026 27.9 8.1 85 457-552 4-91 (135)
166 3rru_A TOM1L1 protein; structu 42.9 1.4E+02 0.0046 27.0 9.4 91 417-507 52-147 (152)
167 1t06_A Hypothetical protein; s 40.5 46 0.0016 32.8 6.5 75 376-450 107-183 (235)
168 2km4_A Regulator of TY1 transp 39.5 1.8E+02 0.0062 25.7 9.7 110 17-131 1-113 (142)
169 4fu3_A Regulation of nuclear P 36.6 1.8E+02 0.0063 25.3 9.4 63 420-493 9-71 (135)
170 4f52_E Glomulin; cullin-ring E 36.2 5.3E+02 0.018 29.3 22.3 112 373-491 313-432 (596)
171 3jxy_A Alkylpurine DNA glycosy 30.2 42 0.0014 33.0 4.3 66 379-451 133-199 (232)
172 1k8k_G P16, ARP2/3 complex 16 28.8 2.4E+02 0.0082 25.2 8.2 57 1046-1102 52-110 (151)
173 2km4_A Regulator of TY1 transp 28.0 1.9E+02 0.0067 25.5 7.9 65 419-493 7-72 (142)
174 1sz9_A PCF11 protein; RNA poly 27.7 2.4E+02 0.0082 25.0 8.4 98 414-513 39-136 (144)
175 2x6h_A GH13170P, VPS34, phosph 26.6 2.1E+02 0.0071 33.2 9.7 81 20-116 75-156 (696)
176 3rru_A TOM1L1 protein; structu 26.6 1.6E+02 0.0056 26.4 7.1 79 501-580 51-133 (152)
177 3d9j_A RNA-binding protein 16; 24.3 3.7E+02 0.013 23.8 12.3 94 477-576 21-118 (145)
178 3ebb_A Phospholipase A2-activa 22.3 6.3E+02 0.022 25.7 17.1 115 142-261 146-264 (304)
179 2juj_A E3 ubiquitin-protein li 21.8 1.3E+02 0.0046 21.2 4.1 44 4-51 2-47 (56)
180 3dwl_G Actin-related protein 2 20.6 3.6E+02 0.012 24.1 7.7 56 1047-1102 54-111 (152)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.3e-64 Score=635.12 Aligned_cols=810 Identities=18% Similarity=0.263 Sum_probs=662.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
+++.++|++++|||+++|++||++|+++++ +|+ +...|.+++. ++.++.+|++|++.||+.+.++ |..++++
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~----w~~~~~~ 86 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH----FQNFPNG 86 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS----GGGCCHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc----cCCCCHH
Confidence 457778888899999999999999999987 676 4688999998 4788999999999999999887 9999999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch
Q 001307 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1103)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~ 179 (1103)
.+..+|+.+++.|.+ +++.+|+.++.+++.+++.+++ +.||+++|.+.+.++++++..|++++.+++.+++..++.+.
T Consensus 87 ~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 87 VTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc
Confidence 999999999999986 6889999999999999998855 89999999999999999999999999999999998776543
Q ss_pred -----hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001307 180 -----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1103)
Q Consensus 180 -----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~ 254 (1103)
..++.+++.+.++++++ +..||..|++++..++... ...+...++.+++.+...++++++++|..++++
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~-----~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISR-----TQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTT-----CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 24788999999999997 9999999999998776542 123455677788888888888999999999999
Q ss_pred HHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001307 255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (1103)
Q Consensus 255 l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 334 (1103)
|..+++.+++.+.+++..+++.++..+.+ .++.+|..|+++|..+++. +...+...+++..++|.++..|.+.+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVLVNGMKYSD 312 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHHHHHTSCCH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999999998854 5789999999999999873 11112245788999999999998776
Q ss_pred CCcccccCC-CCCccc----cCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH
Q 001307 335 DDPLWHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA 409 (1103)
Q Consensus 335 ~~~~w~~~~-~e~ed~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 409 (1103)
++..|...+ ++|+++ ..+..+.++..+++.++...| +.+++.+++.+.+.+++++|+.|++|+.+++.++++++
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~ 391 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence 666675433 111111 345667789999999999998 78999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
+.+.++++.+++.+...++|+++.||.+|++++|++++++++.....|+..+++.+++.+.+ +++.||..|+++|..++
T Consensus 392 ~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 392 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999886644467899999999999998 88999999999999999
Q ss_pred hcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH--hhHhhhhHHHHHHHhhcCCcccchhhhH
Q 001307 490 ENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAK 567 (1103)
Q Consensus 490 ~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~lr~~ 567 (1103)
+.++.. +.||++.+++.|...+++.+......++.+++.++...+..+. +|++.++|.+.+.+....+. ...++
T Consensus 471 ~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~-~~~~~-- 546 (852)
T 4fdd_A 471 EEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE-DKDLF-- 546 (852)
T ss_dssp HHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT-CTTHH--
T ss_pred HHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc-cHHHH--
Confidence 998866 7899999999999999988777777899999999999887764 59999999888776442221 11111
Q ss_pred HHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCC
Q 001307 568 SMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP 647 (1103)
Q Consensus 568 a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~ 647 (1103)
.++++++.++..+|..|.||++.+++.+++.+.
T Consensus 547 --------------------------------------------~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~--- 579 (852)
T 4fdd_A 547 --------------------------------------------PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ--- 579 (852)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH---
T ss_pred --------------------------------------------HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---
Confidence 233344444444444444444433333222210
Q ss_pred CccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCH
Q 001307 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHE 727 (1103)
Q Consensus 648 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~ 727 (1103)
..
T Consensus 580 ---------------------------------------------------------------------------~~--- 581 (852)
T 4fdd_A 580 ---------------------------------------------------------------------------KT--- 581 (852)
T ss_dssp ---------------------------------------------------------------------------HH---
T ss_pred ---------------------------------------------------------------------------HH---
Confidence 00
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 001307 728 EVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQ 807 (1103)
Q Consensus 728 ~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 807 (1103)
+.... .. ..+
T Consensus 582 ------------l~~~~-----------------------------~~-~~~---------------------------- 591 (852)
T 4fdd_A 582 ------------LAQAM-----------------------------LN-NAQ---------------------------- 591 (852)
T ss_dssp ------------HHHHH-----------------------------HH-HHC----------------------------
T ss_pred ------------HHHHH-----------------------------Hh-hcC----------------------------
Confidence 00000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhH--HHHHHh
Q 001307 808 VRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF--DELSSY 885 (1103)
Q Consensus 808 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~ 885 (1103)
.+..++ .+.+++..+.++++.+++..|+.+.||+ ..+++.
T Consensus 592 ---------------------------~~~~~~-----------~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 592 ---------------------------PDQYEA-----------PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp ---------------------------TTTSCC-----------CCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred ---------------------------CcccCC-----------CcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 000000 0012455678888899999999999998 569999
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----------HHHHHHHHHHhhcCCCchHHHHHH
Q 001307 886 LTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKPLVGEA 954 (1103)
Q Consensus 886 l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~ 954 (1103)
+..++ .+..+.+|..++.+++++++++|..+.+|++.++|.+.+ +|++++|.++...+..+.||+..+
T Consensus 634 l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~i 712 (852)
T 4fdd_A 634 MYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMV 712 (852)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHH
T ss_pred HHHHh-CCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 99988 456789999999999999999999999999999999887 899999999999988999999999
Q ss_pred HHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 001307 955 LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDS 1032 (1103)
Q Consensus 955 l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~ 1032 (1103)
++.|.+++..++ ....+++|++.|+||+...+|+.+ .++++++.|+..||..+|.+|...+|++||.+++.+|+
T Consensus 713 l~~L~~~l~~~~----~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 713 LHQLVEIINRPN----TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHHTCSS----CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCC----CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 999999998763 256899999999999999998866 37999999999999999999999999999999999887
Q ss_pred cccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307 1033 DLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus 1033 ~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
.+.+ ++..+...+++ ....+.+.+..+.+++..+.+..|+..|++++++|||+.|++|++.++
T Consensus 789 ~~~~----~~~~~~~~~~~----~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 851 (852)
T 4fdd_A 789 GVIQ----DFIFFCDAVAS----WINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 851 (852)
T ss_dssp GTGG----GHHHHHHHHHT----CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSC
T ss_pred hHHH----HHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHHHhC
Confidence 6654 34444444333 233468999999999999999998777999999999999999998764
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.3e-55 Score=558.89 Aligned_cols=797 Identities=17% Similarity=0.242 Sum_probs=643.4
Q ss_pred CChHHHHHHHHHh-cCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CChhHHHHHHHHHHHhcccCC-------
Q 001307 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (1103)
Q Consensus 19 ~d~~~l~~ll~~~-~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~a~~~L~~~i~~~~------- 89 (1103)
||++++.++|.++ +|||++.|++|+++|+++++++++++...|++++.++ .++.+|++|+++||+.+.++|
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 8899999999999 9999999999999999998755667789999999874 689999999999999998763
Q ss_pred CCcccc-CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC-CHhHHHHHHHHH
Q 001307 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (1103)
Q Consensus 90 ~~~w~~-l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~-~~~~r~~al~~l 167 (1103)
...|.. ++++.+..+|+.+++.|.+ +++.+|++++.+++.+++.++|.+.||+++|.+.+.++++ ++..|+.++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 123776 9999999999999999997 4788999999999999999988679999999999999998 999999999999
Q ss_pred HHhhhhhhhh---chhhHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001307 168 AQLSQYIGDT---LTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1103)
Q Consensus 168 ~~l~~~~~~~---l~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~ 243 (1103)
+.+++..++. +.++.+.+++.+...+.++. +..||..|+++++.++.++....... ...+.+++.+...+.++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccCh---hHHHHHHHHHHHHhcCC
Confidence 9999987655 46789999999999999852 68999999999999877653111100 11345777777788888
Q ss_pred CHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc----------cchhh
Q 001307 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER----------APGMM 312 (1103)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----------~~~~~ 312 (1103)
++.+|..++.+|..+++.++..+.+++. .+++.++..+. +.++.+|..++++|..+++.... .|.+.
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 314 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS 314 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhh
Confidence 9999999999999999999988999998 89998887774 45789999999999999884210 00000
Q ss_pred h-cchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCCh
Q 001307 313 R-KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1103)
Q Consensus 313 ~-~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1103)
. ...+++..++|.++..|.+.+++ ++++++..+..+..+++.++..+| +.+++.+++.+.+.+++.+|
T Consensus 315 ~~~~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 315 YNFALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----------cccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCCh
Confidence 0 12346688899998888754321 122345677789999999999998 78899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhc
Q 001307 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 469 (1103)
Q Consensus 392 ~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l 469 (1103)
+.|++|+.+++.+++++. +.+.++++.+++.+...+.|+++.||.++++++|+++..+++.+ ...+++.++|.+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999874 77789999999999999999999999999999999999887643 2468999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCC---cccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhHhhHhh
Q 001307 470 DDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDA 544 (1103)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~---~~~l~~~l~~ll~~L~~~l~~~~--~~v~~~al~al~~l~~~~~~~~~~~~~~ 544 (1103)
++ + ++||..|++++..+++.++ +..+.||++.+++.++..+.+.+ ..+|..++.+++.++...+..+.+|++.
T Consensus 464 ~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 464 QD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp TS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred cc-C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH
Confidence 88 5 8999999999999999875 35678999999999999998543 7899999999999999999889999999
Q ss_pred hhHHHHHHHhhcC-------C----cccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001307 545 VMPFLKAILVNAT-------D----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1103)
Q Consensus 545 i~~~l~~~l~~~~-------~----~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1103)
++|.+.+.+.... + +....+|..++++++.++..+| ..+.||++.+++.++...+... . +.+++.+
T Consensus 542 l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~-~-~~v~~~~ 618 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP-SSVEPVADMLMGLFFRLLEKKD-S-AFIEDDV 618 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHHHHSTT-G-GGTHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHccCC-C-CcHHHHH
Confidence 9999998887530 1 1244578899999999999999 5799999999999988655321 1 1578899
Q ss_pred HHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHH
Q 001307 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1103)
Q Consensus 614 ~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 693 (1103)
+.+++.++..+|.+|.||++.++|.+++.++.+ + . +.+..|+.
T Consensus 619 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~------------------~--~-----------------~vr~~a~~ 661 (861)
T 2bpt_A 619 FYAISALAASLGKGFEKYLETFSPYLLKALNQV------------------D--S-----------------PVSITAVG 661 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT------------------T--S-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc------------------c--H-----------------HHHHHHHH
Confidence 999999999999999999999999999998321 0 0 12556888
Q ss_pred HHHHHHHHhhhhccccHHHHHHHhccccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Q 001307 694 MLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPAL 772 (1103)
Q Consensus 694 ~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l 772 (1103)
+++.++..++..+.||++.+++.+...+.+. .+.++|..+..+++.++..+. +.+..+++.++|.+
T Consensus 662 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~-------------~~~~~~l~~~l~~l 728 (861)
T 2bpt_A 662 FIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-------------ADFIPYLNDIMALC 728 (861)
T ss_dssp HHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHHHH
T ss_pred HHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHH
Confidence 9999999999999999999999988887654 247899999999999988752 12556778888888
Q ss_pred HHHHccCC-----c-----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHh
Q 001307 773 VEALHKEP-----D-----TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEE 842 (1103)
Q Consensus 773 ~~~~~~~~-----~-----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~ 842 (1103)
+..+.... + ..++..+++++..++..+|.. ++.+...++.+...+..... |.+
T Consensus 729 ~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~--~~~~~~~~~~i~~~l~~~~~--------------d~~- 791 (861)
T 2bpt_A 729 VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK--PEALFPYVGTIFQFIAQVAE--------------DPQ- 791 (861)
T ss_dssp HHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHGGGHHHHHHHHHHHHH--------------CHH-
T ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHc--------------Ccc-
Confidence 88776422 1 356788889999998887752 34444444444444443210 000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHh-hhchhhhHH-HHHHhhhhhcc--CCCCHHHHHHHHHHHHHHHh
Q 001307 843 SELIKEENEQEEEVFDQVGEILGTLIKTF-KAAFLPFFD-ELSSYLTPMWG--KDKTAEERRIAICIFDDVAE 911 (1103)
Q Consensus 843 ~~~~~~~~e~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~-~l~~~l~~~l~--~~~~~~~r~~a~~~l~~l~~ 911 (1103)
.+.++.++..++++++.+++.+ |+.|.+|+. .++|.+++.++ ++.....+..+-.+++.+.+
T Consensus 792 -------~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 792 -------LYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp -------HHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred -------cCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 0013468999999999999999 889999999 89999998876 34455566555555555543
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.2e-52 Score=525.70 Aligned_cols=789 Identities=17% Similarity=0.235 Sum_probs=607.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CChhHHHHHHHHHHHhcccCC-------CCccc
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~a~~~L~~~i~~~~-------~~~w~ 94 (1103)
++.++|++++|+|+++|++|+++|+++.+++++.+...|++++.++ .++.+|++|+++||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 5889999999999999999999999998755566789999999874 579999999999999886431 23599
Q ss_pred cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC--CHhHHHHHHHHHHHhhh
Q 001307 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~ 172 (1103)
.++++.+..+|..+++.|.++ +..+ +.++.+++.+++.+++...||+++|.+.+.++++ ++..|+.++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTC-CSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 5667 9999999999999888789999999999999998 89999999999999998
Q ss_pred hh-hhhchhhHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001307 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1103)
Q Consensus 173 ~~-~~~l~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~ 250 (1103)
.. ++.+..+.+.+++.+.+.+.++. +..+|..|++++..++.++........ ..+.+++.+...+.++++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES---ERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHcCCCCHHHHHH
Confidence 75 45567789999999999999862 689999999999999876431111111 11246667777777888999999
Q ss_pred HHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc-------------cc--hhhhc
Q 001307 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRK 314 (1103)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-------------~~--~~~~~ 314 (1103)
++++|..+++.+++.+.+++. .+++.++.... +.++.+|..++++|..+++.... .| .....
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHH
Confidence 999999999999999999999 99999988764 45789999999999999874200 00 00011
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHH
Q 001307 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1103)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1103)
..+++..++|.++..+...++ +++++++..+.++..+++.++..+| +.+++.+++.+...+.+++|+.|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~----------d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDE----------NDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS----------SCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHhHHHHHHhhcccc----------cccccccHHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccCCChHHH
Confidence 223567888888888865432 1123356778889999999999998 78899999999999999999999
Q ss_pred HHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCC
Q 001307 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 472 (1103)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~ 472 (1103)
++++.+++.+++++. +.+.++++.+++.++..++|+++.||.+|+++++++++.+++.+ ..++++.+++.++..+.+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-
Confidence 999999999999876 66778999999999999999999999999999999999887643 257899999999999998
Q ss_pred CCcchHHHHHHHHHHHHhcCC-------------cccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhh
Q 001307 473 QNPRVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~-------------~~~l~~~l~~ll~~L~~~l~~~---~~~v~~~al~al~~l~~~~~~ 536 (1103)
+ ++|+..++++|..+++.++ .+.+.||++.+++.|+..+.+. +..+|..++.+++.++...+.
T Consensus 463 ~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred C-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 4 8999999999999998754 2457899999999999999865 367899999999999999998
Q ss_pred hhHhhHhhhhHHHHHHHhhc--------CCcc---cchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCC
Q 001307 537 HFQKYYDAVMPFLKAILVNA--------TDKS---NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMET 605 (1103)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~--------~~~~---~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~ 605 (1103)
.+.+|++.++|.+...+... .+.+ ...+|..++.+++.++..+|.+.+.||++.+++.++++..... .
T Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~ 620 (876)
T 1qgr_A 542 DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA-G 620 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc-C
Confidence 88899999999999888752 1111 1346788899999999999856689999999999988654320 0
Q ss_pred CCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhH
Q 001307 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVL 685 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1103)
...+++.++.+
T Consensus 621 ~~~v~~~a~~~--------------------------------------------------------------------- 631 (876)
T 1qgr_A 621 SGGVQEDALMA--------------------------------------------------------------------- 631 (876)
T ss_dssp CCHHHHHHHHH---------------------------------------------------------------------
T ss_pred CCCccHHHHHH---------------------------------------------------------------------
Confidence 01233444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 001307 686 EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS 765 (1103)
Q Consensus 686 ~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 765 (1103)
++.++..++..|.||++.+++.+.+.+.+..++++|..|+.+++.++.... +.+..++
T Consensus 632 ---------l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-------------~~~~~~~ 689 (876)
T 1qgr_A 632 ---------VSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-------------SNIIPFC 689 (876)
T ss_dssp ---------HHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-------------GGGHHHH
T ss_pred ---------HHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-------------HhhhhhH
Confidence 444444444445555555555554444433356777777777777776541 1134456
Q ss_pred HHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhh
Q 001307 766 DFIIPALVEALHK-EPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1103)
Q Consensus 766 ~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~ 844 (1103)
..+++.++..+.. +.+.+++..++.++..+...+|+.+. .+++.+++.+...+.. +.+.+++|.
T Consensus 690 ~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~-~~l~~~~~~l~~~~~~-------------~~~~~d~~~- 754 (876)
T 1qgr_A 690 DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK-KYLEVVLNTLQQASQA-------------QVDKSDYDM- 754 (876)
T ss_dssp HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHHTC-------------CCCTTCHHH-
T ss_pred HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHhc-------------cCCCCChHH-
Confidence 6777777777765 34567888999999999988887432 3566666554443321 111111111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhh----------chhhhHHHHHHhhhhhccCCC-CHHHHHHHHHHHHHHHhhh
Q 001307 845 LIKEENEQEEEVFDQVGEILGTLIKTFKA----------AFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQC 913 (1103)
Q Consensus 845 ~~~~~~e~~~~~~~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~~~l~~l~~~~ 913 (1103)
.+....++..+.+.+..+++..|+ .+.||++.+++.+........ +..+|..|+.++|++++++
T Consensus 755 -----~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 755 -----VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 123457888999999999988764 567899988887776653322 6789999999999999999
Q ss_pred hh-hhhhh-HHhHHHHHHH------------HHHHHHHHHHhhc
Q 001307 914 RE-AALKY-YETYLPFLLE------------AAVYGLGVCAEFG 943 (1103)
Q Consensus 914 ~~-~~~~~-~~~~l~~l~~------------~a~~~lg~l~~~~ 943 (1103)
|. .+.+| .+.+++.++. +|+|++|.+++..
T Consensus 830 ~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 830 GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 88 77777 4566665554 8999999998653
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.3e-49 Score=519.55 Aligned_cols=937 Identities=13% Similarity=0.158 Sum_probs=682.7
Q ss_pred hCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcC--------chHHHHHHHHHHccCCChhHHHHHHHHHHHhcccC
Q 001307 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1103)
Q Consensus 17 ~~~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~--------p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~ 88 (1103)
|+.+..++.++|..+.|+|++.|++|+..|.+..+.+ +..++..+++.+. ++++.+|+.|+..|..++..
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~- 78 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK- 78 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT-
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh-
Confidence 3456788999999999999999999999887654422 1245677777776 68899999999999987643
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC--------CcchhHHHHHHhhc-CCCHhH
Q 001307 89 DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKL 159 (1103)
Q Consensus 89 ~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--------~w~~ll~~l~~~~~-s~~~~~ 159 (1103)
+++.....++..+++.+.+ ++..+|..++.+++.++....+.. .|++++|.+.+.+. ++++..
T Consensus 79 -------~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 79 -------VKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp -------SCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred -------CCHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence 4567888999999999987 577899999999999998655421 49999999999998 588999
Q ss_pred HHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHH
Q 001307 160 QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (1103)
Q Consensus 160 r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~ 239 (1103)
|..++.++..+++..+..+.++.+.+++.+...+.++ +..||..|+.+++.++..... ..+..++|.+++.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~- 224 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSK- 224 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhcc-
Confidence 9999999999999888888889999999999999997 899999999999999986532 2245567777776654
Q ss_pred HhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH
Q 001307 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319 (1103)
Q Consensus 240 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 319 (1103)
..++..+..+++++..++...+..+.+++..+++.++..+. +.++++|..+++++..+++. .+ ..+.+++
T Consensus 225 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l 294 (1230)
T 1u6g_C 225 --NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR---CP---KEVYPHV 294 (1230)
T ss_dssp --TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC---TT---CCCHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHH---Ch---HHHHHhH
Confidence 22346778899999999998888889999999999999885 34688999999999999883 33 2456799
Q ss_pred HHHHHHHHHhhcCCC-----CCccccc------CCCCCc---------cccCCCchhhHHHHHHHHHHHcCC--CcchHH
Q 001307 320 NRLFAILMSMLLDIE-----DDPLWHS------AETEDE---------DAGESSNYSVGQECLDRLAIALGG--NTIVPV 377 (1103)
Q Consensus 320 ~~l~~~l~~~l~~~~-----~~~~w~~------~~~e~e---------d~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 377 (1103)
+.++|.++..+.... ++.+|.. .+++++ ++..|..+..|..+++.++...|. ..+++.
T Consensus 295 ~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~ 374 (1230)
T 1u6g_C 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374 (1230)
T ss_dssp HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 999999988876421 1112210 000000 001122355688889998886652 123444
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhh-------------------cHHHHHHhHHHHHHHHHhcCCCCChhHHHHH
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~-------------------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 438 (1103)
++|.+...+.+.++.+|.+++.+++.+... +...+..+++.+++.+.+.++|+++.+|.++
T Consensus 375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~ 454 (1230)
T 1u6g_C 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454 (1230)
T ss_dssp THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHH
Confidence 566666677788899999999999887753 3345667888999999999999999999999
Q ss_pred HHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCc--chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC
Q 001307 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1103)
Q Consensus 439 ~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~ 516 (1103)
+.+++.++..++..+ .+|++.+++.++..+.+ +++ .++..++.++..+++..+++.+.||++.+++.++..+++.+
T Consensus 455 ~~~L~~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~ 532 (1230)
T 1u6g_C 455 FNMLTELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF 532 (1230)
T ss_dssp HHHHHHHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS
T ss_pred HHHHHHHHHHchhhh-HHHHHHHHHHHHHHHcC-CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc
Confidence 999999999876666 67999999999999999 654 89999999999999988877788999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHhhhh-------hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHH
Q 001307 517 QMVQEGALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (1103)
Q Consensus 517 ~~v~~~al~al~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~ 589 (1103)
..++..++.+++.++..++. .+.||++.++|.+...+... +.+..+|..|+.|++.++...| +.+.++++
T Consensus 533 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~--d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~ 609 (1230)
T 1u6g_C 533 YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA--DIDQEVKERAISCMGQIICNLG-DNLGSDLP 609 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS--SSCHHHHHHHHHHHHHHHHHTG-GGCCTHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhC-chhhhhHH
Confidence 99999999999999988776 78899999999999988542 2345789999999999999999 66788888
Q ss_pred HHHHHHHHHhcCCC-------------------------------------CCCCchhhHHHHHHHHHHhHhcC------
Q 001307 590 QVMEVLMSLQGSQM-------------------------------------ETDDPTTSYMLQAWARLCKCLGQ------ 626 (1103)
Q Consensus 590 ~i~~~l~~l~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~~~~~------ 626 (1103)
.+++.+........ +.+..+|..++.+++.++...+.
T Consensus 610 ~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~ 689 (1230)
T 1u6g_C 610 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 689 (1230)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHH
Confidence 88887765322110 11223555666666666666543
Q ss_pred ------------------------------------CcccchhhhhHHHHHhcccCC--Ccc----------ccCCCC--
Q 001307 627 ------------------------------------DFLPYMSVVMPPLLQSAQLKP--DVT----------ITSADS-- 656 (1103)
Q Consensus 627 ------------------------------------~~~p~l~~i~~~ll~~~~~~~--~~~----------~~~~~~-- 656 (1103)
.+.++.+.++|.++..+.... +.. +.....
T Consensus 690 v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 769 (1230)
T 1u6g_C 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNN 769 (1230)
T ss_dssp HHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCC
Confidence 223344455555544332211 000 000000
Q ss_pred -C-c--------cccCCCC--cccc---hh----h-----cCC-------c-eeeeec--hhHHHHHHHHHHHHHHHHHh
Q 001307 657 -D-N--------EIEDSDD--DSME---TI----T-----LGD-------K-RIGIKT--SVLEEKATACNMLCCYADEL 702 (1103)
Q Consensus 657 -d-~--------~~~~~~~--~~~~---~~----~-----~~~-------~-~~~v~~--~~~~~k~~A~~~l~~l~~~~ 702 (1103)
. . .....++ ...+ .. . .++ . ...+++ .....+..++.+++.+....
T Consensus 770 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 849 (1230)
T 1u6g_C 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI 849 (1230)
T ss_dssp CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccC
Confidence 0 0 0000000 0000 00 0 000 0 001110 11123445666666665432
Q ss_pred hhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcH
Q 001307 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1103)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 782 (1103)
.+.++ +++.+.+.+.+.+. +++||.+|+.+++.+.... +..++|.+++.+..+ .
T Consensus 850 --~~~~~-~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~--------------------~~~~lp~ll~~l~~~--~ 903 (1230)
T 1u6g_C 850 --DLSGQ-LELKSVILEAFSSP-SEEVKSAASYALGSISVGN--------------------LPEYLPFVLQEITSQ--P 903 (1230)
T ss_dssp --CCCSC-THHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT--------------------HHHHHHHHHHHHHSC--G
T ss_pred --CCccc-ccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccC--------------------HHHHHHHHHHHHhcc--c
Confidence 23332 44566777777764 8999999999999987321 224467777777654 3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHH
Q 001307 783 EICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGE 862 (1103)
Q Consensus 783 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~ 862 (1103)
+.+...+.++++++...+... +..+.+.+...|.... ++ .++.++..+++
T Consensus 904 ~~~~~~l~al~e~i~~~~~~~----~~~~~~~i~~~L~~~~------------~~--------------~~~~~r~~~a~ 953 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISSASVVG----LKPYVENIWALLLKHC------------EC--------------AEEGTRNVVAE 953 (1230)
T ss_dssp GGHHHHHHHHHHHHHSSCSTT----THHHHHHHHHHHTTCC------------CC--------------SSTTHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcCChhh----HHhhHHHHHHHHHHHh------------cC--------------cchhhHHHHHH
Confidence 457788999999998654432 3334444444444311 11 01136788999
Q ss_pred HHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----------H
Q 001307 863 ILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE-----------A 931 (1103)
Q Consensus 863 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-----------~ 931 (1103)
++|.+++..++. ++|.+.+.+. +.++..|..+++.++.++..++....++++.+++.++. +
T Consensus 954 ~lg~l~~~~~~~-------l~p~l~~~l~-~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~ 1025 (1230)
T 1u6g_C 954 CLGKLTLIDPET-------LLPRLKGYLI-SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV 1025 (1230)
T ss_dssp HHHHHHHSSGGG-------THHHHTTTSS-SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHH
T ss_pred HHhhhhccChHH-------HHHHHHHHhc-CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999886543 5666666664 55677899999999999888887777777777776664 8
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCC------------CChhhhhHHHHHHHHHHHHHhhcCCCCCHhhH
Q 001307 932 AVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA------------LQPENLMAYDNAVSALGKICQFHRDSIDAAQV 999 (1103)
Q Consensus 932 a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~------------~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~ 999 (1103)
|+++++.++.+.+..+.+++..+++.|.+.+..++. +.|++.++|+||..|+++++.++.+.+++.++
T Consensus 1026 a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~ 1105 (1230)
T 1u6g_C 1026 ALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEF 1105 (1230)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999988764432 44678899999999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc
Q 001307 1000 VPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1054 (1103)
Q Consensus 1000 l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 1054 (1103)
++.|++.||. |.+.+..+|..|.+|+..+|+.+.+ ++++++..+...+.
T Consensus 1106 ~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~l~ 1154 (1230)
T 1u6g_C 1106 LNHVEDGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQ----RLDRLVEPLRATCT 1154 (1230)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHSCCHHHHT----TTTTTHHHHHHHHH
T ss_pred HHHHHcccCc--hHHHHHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHh
Confidence 9999999986 5666777999999999999888876 79999999999986
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.8e-45 Score=463.44 Aligned_cols=598 Identities=13% Similarity=0.166 Sum_probs=454.6
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccc---
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~--- 94 (1103)
.|.+++.++|.+.+|||+++| ||++|+++++ +|+ |...|++++.+ +.+..+|++|+++||+.+.++ |.
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~-~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~ 73 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLET-QDG-FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDEN 73 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STT-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSS
T ss_pred CcHHHHHHHHHHhcCCCHHHH--HHHHHHHhhc-CCC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc----CCCcc
Confidence 467899999999999999998 9999999977 776 56889999976 567899999999999999987 86
Q ss_pred ---cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 95 ---~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
.++++.+..||+.+++.+.++ +..+|++++.+|+.|+++++| +.||+++|.+.+.+++++...+++++.++..++
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999985 589999999999999999999 799999999999999988889999999999999
Q ss_pred hhhhh---------h----chhhHHHHHHHHHH---hhCCCCC--hHHH------HHHHHHHHHHHHhcCCcchHhHHHh
Q 001307 172 QYIGD---------T----LTPHLKHLHAVFLN---CLTNSNN--PDVK------IAALNAVINFIQCLTSSADRDRFQD 227 (1103)
Q Consensus 172 ~~~~~---------~----l~~~~~~l~~~l~~---~l~~~~~--~~vr------~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1103)
+.... . +....+.+++++.. .++++.. ..++ ..+++++..+....-.......+..
T Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~ 231 (960)
T 1wa5_C 152 KRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQV 231 (960)
T ss_dssp GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHH
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 86432 1 12233333444433 3555311 1233 3355555544321111111223344
Q ss_pred hHHHHHHHHHHHHh--CCC---------HHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhc---CCCcchHHHHH
Q 001307 228 LLPLMMRTLTESLN--NGN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEGTRHL 293 (1103)
Q Consensus 228 ~ip~ll~~l~~~l~--~~~---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~r~~ 293 (1103)
+++.+++.+..... ..+ +.++..++++|..+++.+++.|.+++..+++.+++.+. +...++.++..
T Consensus 232 ~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 311 (960)
T 1wa5_C 232 GMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSK 311 (960)
T ss_dssp HHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 44444444321000 001 24577889999999999999999999999999998774 23456789999
Q ss_pred HHHHHHHHHHhhhccchhhhcc--hhhHHHHH-HHHHHhhcCCC-CCcccccCCCC-----CccccCCCchhhHHHHHHH
Q 001307 294 AIEFVITLAEARERAPGMMRKL--PQFINRLF-AILMSMLLDIE-DDPLWHSAETE-----DEDAGESSNYSVGQECLDR 364 (1103)
Q Consensus 294 a~~~l~~l~~~~~~~~~~~~~~--~~~~~~l~-~~l~~~l~~~~-~~~~w~~~~~e-----~ed~~~~~~~~~a~~~l~~ 364 (1103)
++++|.++++.+. ....+ .+++..++ +.++..|...+ |.+.|..+++| .|+++.++.+.+|..+++.
T Consensus 312 al~fl~~~~~~~~----~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~ 387 (960)
T 1wa5_C 312 SLSFLTAVTRIPK----YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE 387 (960)
T ss_dssp HHHHHHHHHTSHH----HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHh----HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHH
Confidence 9999999987421 11222 37889999 78888887543 33457543221 1123345778899999999
Q ss_pred HHHHcCCCcchHHHHHHHHHhhc------CCChHHHHHHHHHHHHHHhh---cHHHHHH-----hHHHH-HHHHHhcCCC
Q 001307 365 LAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEG---CAKVMVK-----NLEQV-LSMVLNSFRD 429 (1103)
Q Consensus 365 l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~---~~~~~~~-----~l~~i-~~~l~~~l~d 429 (1103)
++..+| +.+++.+++.+.+.++ +.+|+.|++|+++++.++++ +...... .+..+ ...+.+.+.|
T Consensus 388 l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 388 LKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence 999998 7899999999888876 67899999999999999875 2211111 33333 3345556677
Q ss_pred C---ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC----------Cccc
Q 001307 430 P---HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC----------TPEI 496 (1103)
Q Consensus 430 ~---~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~----------~~~~ 496 (1103)
+ +|.||.+|+|++|++++++. ..++..+++.+++.+.+ +++.||.+|+.+|..|++.. ..+.
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred CCCCCceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 7 99999999999999999874 35799999999999998 78999999999999999853 2456
Q ss_pred ccCchHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhc-CCcccchhhhHHHH
Q 001307 497 LTPYLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSME 570 (1103)
Q Consensus 497 l~~~l~~ll~~L~~~l~~~~-----~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~lr~~a~~ 570 (1103)
+.||++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.+...+... .++++..++..+++
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 621 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFE 621 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 88999999999999998751 1245789999999999999999999999999999988764 34455667888999
Q ss_pred HHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHH
Q 001307 571 CISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (1103)
Q Consensus 571 ~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll 640 (1103)
|++.++++.+++.+.++.+.+++.+..+..... ....++++..++.+.... ..|.+|+..++|.++
T Consensus 622 ~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 622 SIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh---HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 999999998888899999999999888655322 236778888888888777 789999999998887
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.4e-42 Score=440.37 Aligned_cols=711 Identities=17% Similarity=0.215 Sum_probs=523.2
Q ss_pred CChHHHHHHHHHh-cCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 19 ~d~~~l~~ll~~~-~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
+|.+++.+++..+ .++|++.|++|+++|+++++ +|+.| ..+.+++.++.++.+|++|++.||+.+.++ |..++
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~ 94 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDIP 94 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGSC
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHhC----HHhCC
Confidence 5788999999994 56899999999999999999 78875 778889888889999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcC-----CCHhHHHHHHHHHHHh
Q 001307 98 LHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQL 170 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s-----~~~~~r~~al~~l~~l 170 (1103)
++.+..+|+.+++.+...+ ++.||++++.+++.|+++++| ..||++++.+.+.+++ +++..++.++.+|..+
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 9999999999999998742 588999999999999999998 6799999999999876 3666889999999999
Q ss_pred hhhhh-------------hhchhhHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHH----------------------
Q 001307 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVINFIQ---------------------- 214 (1103)
Q Consensus 171 ~~~~~-------------~~l~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~~l~~---------------------- 214 (1103)
++++. +.+..+++.+++.+...+.+..+. .++..+++|+..++.
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCc
Confidence 97541 223456778888888777664222 355566666644432
Q ss_pred ---------------hcCCcchHhHHHhhHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHHccchHHHH------HhH
Q 001307 215 ---------------CLTSSADRDRFQDLLPLMMRTL---TESLNNGNEATAQEALELLIELAGTEPRFLR------RQL 270 (1103)
Q Consensus 215 ---------------~~~~~~~~~~~~~~ip~ll~~l---~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~ 270 (1103)
..........+..+++.++..+ ......++.+.....++++..+++.++..+. +++
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred hHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH
Confidence 1110001122333444444332 2223445667778888999999888776664 567
Q ss_pred HHHHHHHHHhhcCC---CcchHHHHHHHHHHHHHHHhhhc-----cchhhhcchhhHHHHHHHHHHhhcCCCCCcccccC
Q 001307 271 VDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARER-----APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1103)
Q Consensus 271 ~~l~~~l~~~~~~~---~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~ 342 (1103)
..+++.++.+...+ ..+++++..++++|..+++.... .+.......+++.++++.++..|...++ ++|...
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~-~~~~~~ 412 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSD-EEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH-HHHHTS
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccccCC
Confidence 78888888877542 23567788999999999883110 0222334557888899999998865433 223221
Q ss_pred CCCCccccCC-CchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh----cCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001307 343 ETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1103)
Q Consensus 343 ~~e~ed~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1103)
++ ||+++. ..++.+.+++..++...| +.+++.+++.+.+.+ .+.+|+.|++++++++.+++++.+...++++
T Consensus 413 ~~--de~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 413 SS--DEKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp CH--HHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred Ch--hHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 11 111122 234567788999988887 778888888888888 6779999999999999999988754446777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
.+++.+ ..+.++++.||..+++++|++++++..+. ++++.+++.++..+++ +.|+..|+.++..+++.++.. +
T Consensus 490 ~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~-l 562 (963)
T 2x19_B 490 GLIGLI-PRISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYD-L 562 (963)
T ss_dssp HHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG-C
T ss_pred HHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHH-H
Confidence 888844 45666799999999999999999887543 7899999999999965 789999999999999998754 7
Q ss_pred cCchHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHhhh-hhhHhhHhhhhHHHHHHHhhc----CCcccchhhhHHHH
Q 001307 498 TPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSME 570 (1103)
Q Consensus 498 ~~~l~~ll~~L~~~l~~~--~~~v~~~al~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~----~~~~~~~lr~~a~~ 570 (1103)
.||++.+++.+..++.+. +...+..++.+++.++...+ +.+.+|++.+++.+...++.. .+++....+...++
T Consensus 563 ~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 642 (963)
T 2x19_B 563 PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILG 642 (963)
T ss_dssp TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999998863 56889999999999998885 788999999999998877641 22333445667899
Q ss_pred HHHHHHHhhCh---------------------hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcc
Q 001307 571 CISLVGMAVGK---------------------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 629 (1103)
Q Consensus 571 ~l~~i~~~~~~---------------------~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 629 (1103)
|++.++++++. +.+.++.+.+++.+..+..... .+..+.+.+..+++.++..+|++|.
T Consensus 643 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~ 721 (963)
T 2x19_B 643 LLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFA 721 (963)
T ss_dssp HHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTG
T ss_pred HHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccccc
Confidence 99999998872 2256677888888777543211 2335788888899999999999999
Q ss_pred cchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHh--hhhcc
Q 001307 630 PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL--KEGFF 707 (1103)
Q Consensus 630 p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~--~~~~~ 707 (1103)
||+|.+++.++......+. ...+.+++.++... +..+.
T Consensus 722 ~~l~~~~~~l~~~~~~~~~----------------------------------------~~~l~l~~~li~~f~~~~~~~ 761 (963)
T 2x19_B 722 PMVPQLCEMLGRMYSTIPQ----------------------------------------ASALDLTRQLVHIFAHEPAHF 761 (963)
T ss_dssp GGHHHHHHHHHHHHHHSCC----------------------------------------HHHHHHHHHHHHHHTTCTTTC
T ss_pred ccHHHHHHHHHHHHHcCCc----------------------------------------cHHHHHHHHHHHHhCCCcchH
Confidence 9999999998876643110 11344566666633 33345
Q ss_pred ccHHHHHHH----hcccccc--cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHHHHHHHHccCC
Q 001307 708 PWIDQVAPT----LVPLLKF--YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL-SDFIIPALVEALHKEP 780 (1103)
Q Consensus 708 p~~~~~~~~----l~~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~ 780 (1103)
|++..+++. ++..+.. ..++++|...+..+..++.......- .+ .. +..+++.++..+. .+
T Consensus 762 ~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~-------~~----~~~~~~i~~~~~~~l~-~~ 829 (963)
T 2x19_B 762 PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL-------CE----RLDVKAVFQCAVLALK-FP 829 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG-------CT----TSCHHHHHHHHHHHTT-CS
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc-------CC----cccHHHHHHHHHHHcC-CC
Confidence 555444433 3333321 12589999999999988876421100 01 12 4556666666666 56
Q ss_pred cHHHHHHHHHHHHHHHHHhC
Q 001307 781 DTEICASMLDSLNECIQISG 800 (1103)
Q Consensus 781 ~~~~~~~~~~~l~~~~~~~g 800 (1103)
+.++...++..+.+++...+
T Consensus 830 ~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 830 EAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp CHHHHHHHHHHHHHHGGGTT
T ss_pred CHHHHHHHHHHHHHHHhcCC
Confidence 88889899999998887655
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-42 Score=442.23 Aligned_cols=769 Identities=13% Similarity=0.154 Sum_probs=511.6
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
+|.+++.+++..+++||++.|++|+++|+++++ +|+.| ..+.+++..+.++.+|++|++.||+.+.++ |..+++
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~~ 77 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVPP 77 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCCG
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHcc----HhhCCH
Confidence 678899999999999999999999999999998 78775 788999988889999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC------CHhHHHHHHHHHHHh
Q 001307 99 HTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQL 170 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~------~~~~r~~al~~l~~l 170 (1103)
+.+..+|+.+++.+.... ++.||++++.+++.|+++++| .||++++.+.+.++++ ++..++.++.+|..+
T Consensus 78 ~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 78 ENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHh
Confidence 999999999999998743 678999999999999999998 9999999999998875 567899999999999
Q ss_pred hhhhh------------hhchhhHHHHHHHHHHhhCCCCCh-------HHHHHHHHHHHHHHHh--cCCc----------
Q 001307 171 SQYIG------------DTLTPHLKHLHAVFLNCLTNSNNP-------DVKIAALNAVINFIQC--LTSS---------- 219 (1103)
Q Consensus 171 ~~~~~------------~~l~~~~~~l~~~l~~~l~~~~~~-------~vr~~a~~~l~~l~~~--~~~~---------- 219 (1103)
++++. +.+..+++.+++++.+.+.+..+. .++..+++|+..++.. ++..
T Consensus 156 ~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~ 235 (971)
T 2x1g_F 156 PEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235 (971)
T ss_dssp HHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHH
Confidence 97532 223445677777777776543122 6788888888776652 2100
Q ss_pred -------------------------------------------chHhHHHhhHHHHHHHHHHH---HhCCCH---HHHHH
Q 001307 220 -------------------------------------------ADRDRFQDLLPLMMRTLTES---LNNGNE---ATAQE 250 (1103)
Q Consensus 220 -------------------------------------------~~~~~~~~~ip~ll~~l~~~---l~~~~~---~~~~~ 250 (1103)
.....+..++|.+++..... ..+++. +....
T Consensus 236 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp HHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred hhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHH
Confidence 00112233444444433322 233443 77778
Q ss_pred HHHHHHHHHccchHHHH-----------HhHHHHHHHHHHhhcCC---CcchHHHHHHHHHHHHHHHhh-h-----ccch
Q 001307 251 ALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAPG 310 (1103)
Q Consensus 251 ~~~~l~~l~~~~~~~~~-----------~~~~~l~~~l~~~~~~~---~~~~~~r~~a~~~l~~l~~~~-~-----~~~~ 310 (1103)
.++.+..+++.++..+. +++..+++.++.+...+ ..+++++..++++|..+++.. . +.+.
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH
Confidence 88999988887766554 56778888888766431 246789999999999998721 0 1122
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcC--
Q 001307 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 388 (1103)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-- 388 (1103)
......+++..+++.++..+...+++ +|...+ .+|+++..+.++.+..++..++..+| +.+++.+++.+.+.+.+
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~-~~~~~d-~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEK-SLAKWS-SDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTT-TTSCSC-HHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc-cccccC-HhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhcc
Confidence 22234578888999999888654432 232111 11111112345567788888888887 78899999998888764
Q ss_pred ---CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC--CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001307 389 ---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1103)
Q Consensus 389 ---~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~ 463 (1103)
.+|+.|++++++++.+++++.+...++++.+++ ++..+. |+++.||..+++++|++++++.... +|++.+++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~ 549 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAIN 549 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 789999999999999999998766778888888 444454 6799999999999999999987654 78999999
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHhhh-hhhHh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQK 540 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~--~~~v~~~al~al~~l~~~~~-~~~~~ 540 (1103)
.++..+ + ++|+..|+.++..+++.++.. +.||++.+++.+...++++ +...+..++++++.++...+ +.+.+
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C---hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999 4 689999999999999998855 7899999999999999984 57899999999999998765 66778
Q ss_pred hHhhhhHHHHHHHhhcC-----CcccchhhhHHHHHHHHHHHhhC------------hhhhhhhHHHHHHHHHHHhcCCC
Q 001307 541 YYDAVMPFLKAILVNAT-----DKSNRMLRAKSMECISLVGMAVG------------KDKFRDDAKQVMEVLMSLQGSQM 603 (1103)
Q Consensus 541 ~~~~i~~~l~~~l~~~~-----~~~~~~lr~~a~~~l~~i~~~~~------------~~~~~~~~~~i~~~l~~l~~~~~ 603 (1103)
|+..+++.+...+.... +++...-...++++++.+..+++ .+.+.|+.+.+++++..+.+. .
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~ 703 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-W 703 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh-c
Confidence 88888877777665321 11121222334555555556554 235778889999988876542 2
Q ss_pred CCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeech
Q 001307 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 683 (1103)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1103)
..+.++.+.++.++++++..+|.++.||+|.+++.++..++..+.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----------------------------------- 748 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----------------------------------- 748 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-----------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-----------------------------------
Confidence 234568889999999999999999999999999999988754210
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh--cc----ccHHHHHHHhcccccc------cCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001307 684 VLEEKATACNMLCCYADELKEG--FF----PWIDQVAPTLVPLLKF------YFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1103)
Q Consensus 684 ~~~~k~~A~~~l~~l~~~~~~~--~~----p~~~~~~~~l~~~l~~------~~~~~vr~~a~~~l~~l~~~~~~~~~~g 751 (1103)
..++.+++.++..+|.. .. +.+..++..+...+.. ..++++++..+..+..++.......-
T Consensus 749 -----~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~-- 821 (971)
T 2x1g_F 749 -----APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLE-- 821 (971)
T ss_dssp -----HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGG--
T ss_pred -----hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHc--
Confidence 11344566666555542 22 2233333333332221 12678888888887777754311000
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001307 752 LAPGRNESYVKQL-SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA 830 (1103)
Q Consensus 752 ~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 830 (1103)
. ... +..+++..+..+.. +++.....++..+..++...+. .+.+..++......|....-.. ..
T Consensus 822 -----~----s~~~l~~i~~~~~~~l~~-~~~~~~~s~~~fl~~~i~~~~~---~~~~~~~~~~~g~~l~~~l~~~-~~- 886 (971)
T 2x1g_F 822 -----D----KTLAYDRLVFYAQRGMTL-PESGAIRNSIQFLTHFVMQSRN---HAHVTEVVLATGEQTLYTAMMC-VG- 886 (971)
T ss_dssp -----C----TTSCHHHHHHHHHHHHTS-SCSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHH-HH-
T ss_pred -----C----CcccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHhHHHHHHHHHHH-hc-
Confidence 0 023 45555555555543 3444556677777776665321 1223333322222211111000 00
Q ss_pred HhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHH
Q 001307 831 ERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELS 883 (1103)
Q Consensus 831 ~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 883 (1103)
.. .....++.++++++.+...+|..+.+|+...+
T Consensus 887 -----~~--------------~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l 920 (971)
T 2x1g_F 887 -----YL--------------TPRSQVDKFADILLAMNRKYAAEMAVWMKSLM 920 (971)
T ss_dssp -----TT--------------SCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cc--------------CChhHHHHHHHHHHHHHHHCcHHHHHHHHHHh
Confidence 00 00112345788899999999888888877644
No 8
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.9e-38 Score=404.31 Aligned_cols=721 Identities=14% Similarity=0.190 Sum_probs=509.5
Q ss_pred CCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 18 ~~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
.||.+++.++|..+++|+++.|++|+++|+++++ +|+.+ ..+.+++.++.++.+|++|++.||+.+.++ |..++
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~~-~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~ 85 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLP 85 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTGG-GGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSC
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-CchHH-HHHHHHHhhCCCHHHHHHHHHHHHHHHHhh----CccCC
Confidence 4788999999999999999999999999999988 78764 778899988889999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHhhcc--------hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001307 98 LHTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~--------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~ 169 (1103)
++.+..+|+.+++.+.+++ ++.+|++++.+++.|++.++| +.||++++.+.+.++ ++...++.++.+|..
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHH
Confidence 9999999999999998753 378999999999999999999 899999999999997 566678899999999
Q ss_pred hhhhhh----------------hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcch------------
Q 001307 170 LSQYIG----------------DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD------------ 221 (1103)
Q Consensus 170 l~~~~~----------------~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~------------ 221 (1103)
+++.+. +.+..+++.+++.+...+++..+..++..+++++..++.+.+....
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~ 243 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHH
Confidence 998754 2244567777888887777654677888888888777665431100
Q ss_pred ------------------------------HhHHHhhHHHHHHHHHH-----------HH---hCCCHHHHHHHHHHHHH
Q 001307 222 ------------------------------RDRFQDLLPLMMRTLTE-----------SL---NNGNEATAQEALELLIE 257 (1103)
Q Consensus 222 ------------------------------~~~~~~~ip~ll~~l~~-----------~l---~~~~~~~~~~~~~~l~~ 257 (1103)
...+..+++.+++.+.. .. .+.+.+.+...++.+..
T Consensus 244 ~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 244 FMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp HHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred hCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 01112222333333322 01 11233344556666666
Q ss_pred HHccchHH------HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001307 258 LAGTEPRF------LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1103)
Q Consensus 258 l~~~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1103)
+++.+... +.+++..+++.++.+... .+++++..++++|..+++.....|.......+++.++++.++..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~ 401 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcC
Confidence 65544333 355677788888887654 3788999999999999983100133334556899999999999998
Q ss_pred CCCCCcccccCCCC------CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc--CCChHHHHHHHHHHHH
Q 001307 332 DIEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQ 403 (1103)
Q Consensus 332 ~~~~~~~w~~~~~e------~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~ 403 (1103)
..+ +..|..+++. .+|+|+++.++.+..+|+.++...| ..+++.+.+.+.+.++ +.+|+.|+++++++|+
T Consensus 402 ~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 402 RPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCc-ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 754 4467532221 1122233456678889999986665 7888889999988886 3689999999999999
Q ss_pred HHhhcHHHHH-HhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcch
Q 001307 404 IAEGCAKVMV-KNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1103)
Q Consensus 404 l~~~~~~~~~-~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1103)
+++++.+... .+++.+++.+..... |+++.||..+++++|++++++..+ ..+++.+++.++..+.+ ++++|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHH
T ss_pred HhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcC-CCHHH
Confidence 9987765433 457888887766432 467888888999999999988764 37899999999999998 88999
Q ss_pred HHHHHHHHHHHHhcCCcccc-------cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--hhhHhhHhhhhHH
Q 001307 478 QAHAASAVLNFSENCTPEIL-------TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPF 548 (1103)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l-------~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~--~~~~~~~~~i~~~ 548 (1103)
+..||.++..|++.++...+ .||++.++..+..++...+..-....+.+++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999998875422 49999999999999988777777889999999998877 3578899999988
Q ss_pred HHHHHhhc--------CCc-ccchhh--hHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcC------------C-CC
Q 001307 549 LKAILVNA--------TDK-SNRMLR--AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------------Q-ME 604 (1103)
Q Consensus 549 l~~~l~~~--------~~~-~~~~lr--~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~------------~-~~ 604 (1103)
+...+... .+. +....+ ...+.|++.++.++| +.|.|++..++.-++.+... + ..
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~ 715 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA 715 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchh
Confidence 77655421 000 001111 345788899999999 77999888776544432110 0 00
Q ss_pred CCCc-------hhhHHHHHHHHHHhHh---cCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcC
Q 001307 605 TDDP-------TTSYMLQAWARLCKCL---GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1103)
Q Consensus 605 ~~~~-------~~~~~~~~~~~l~~~~---~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 674 (1103)
...+ ....+.+.+....... +..+.||+|.+++.++...+.. ...
T Consensus 716 ~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~-~~~------------------------ 770 (1049)
T 3m1i_C 716 TKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNN-VPD------------------------ 770 (1049)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHS-CGG------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-Ccc------------------------
Confidence 0011 1111222222222111 1223466676666666554320 000
Q ss_pred CceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhccc----cc--ccCCHHHHHHHHHhHHHHHHHHHHHH
Q 001307 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL----LK--FYFHEEVRKAAVSAMPELLRSAKLAI 748 (1103)
Q Consensus 675 ~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~----l~--~~~~~~vr~~a~~~l~~l~~~~~~~~ 748 (1103)
.+. ...+.+++.++..+|+.+.||+..++..+... +. ...++++|...+..+..++..+....
T Consensus 771 -----~~~------~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l 839 (1049)
T 3m1i_C 771 -----ARD------AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAF 839 (1049)
T ss_dssp -----GCC------THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred -----ccc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHH
Confidence 000 12567899999999999999998887776544 22 12368999999999998887542211
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhC
Q 001307 749 EKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1103)
Q Consensus 749 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g 800 (1103)
-. ..+. .+..++...+.++. .+++++...++..+.+++...+
T Consensus 840 ~~-----~~~~----~~~~v~~~~~~al~-~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 840 LE-----LPPA----AFKLFVDAICWAFK-HNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HH-----SCHH----HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred Hc-----CCHH----HHHHHHHHHHHHhC-CCCchHHHHHHHHHHHHHHHHH
Confidence 10 0122 23444555555554 4578888888888888887654
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.2e-37 Score=404.04 Aligned_cols=957 Identities=13% Similarity=0.140 Sum_probs=625.0
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC
Q 001307 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1103)
Q Consensus 59 ~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1103)
..|++-+. ++++.+|..|..-|.+.+... ...+++.....+...+++.|.+ +++.+|+.++.+++.++... +.
T Consensus 9 ~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~----~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~-~~ 81 (1230)
T 1u6g_C 9 SNLLEKMT-SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV-KE 81 (1230)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS-CH
T ss_pred HHHHHhcC-CCCHhHHHHHHHHHHHHHccc----ccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC-CH
Confidence 44555443 789999999999999888764 3355666777888889999986 79999999999999998754 33
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh------chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT------LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~------l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1103)
..++.+++.+.+.+.+++..+|..+..+++.++...+.. ...+.+.++|.+...+.+..+..+|..|+.++..+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 578899999999999988889999999999999887653 34468899999999998523899999999999999
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHH
Q 001307 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRH 292 (1103)
Q Consensus 213 ~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~ 292 (1103)
+...... +...++.+++.+...+.++++.+|..++.++..++...+..+ +..+++.++..+... .+..+|.
T Consensus 162 ~~~~~~~-----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~-~~~~~r~ 232 (1230)
T 1u6g_C 162 LSRQGGL-----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKN-DSMSTTR 232 (1230)
T ss_dssp HHHTCSS-----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHT-CSSCSCT
T ss_pred HHHhHhH-----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccC-CchhHHH
Confidence 9765321 223456777777777888889999999999999998766543 233444444443322 1245778
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC
Q 001307 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1103)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1103)
.++++|..+++. .|. .+.+++..++|.++..+.+. +...+..+..++..++..+| +
T Consensus 233 ~a~~~l~~l~~~---~~~---~~~~~l~~l~~~ll~~l~d~-----------------~~~vR~~a~~~l~~l~~~~~-~ 288 (1230)
T 1u6g_C 233 TYIQCIAAISRQ---AGH---RIGEYLEKIIPLVVKFCNVD-----------------DDELREYCIQAFESFVRRCP-K 288 (1230)
T ss_dssp THHHHHHHHHHH---SSG---GGTTSCTTHHHHHHHHHSSC-----------------CTTTHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHHHHHHHHHCh-H
Confidence 889999999884 332 34567888999998887532 12356678888999988877 4
Q ss_pred c---chHHHHHHHHHhhc-------------------------------------CCChHHHHHHHHHHHHHHhhcHHHH
Q 001307 373 T---IVPVASEQLPAYLA-------------------------------------APEWQKHHAALIALAQIAEGCAKVM 412 (1103)
Q Consensus 373 ~---~~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~l~~l~~~~~~~~ 412 (1103)
. +++.+++.+...+. +..|+.|.+|..+++.++...++.+
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 4 34445555543331 1248999999999999998766667
Q ss_pred HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch------------------hHHhhhhhhhHHHHHhhccCCCC
Q 001307 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP------------------DLQNQFHPQVLPALAGAMDDFQN 474 (1103)
Q Consensus 413 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~------------------~~~~~~~~~il~~l~~~l~~~~~ 474 (1103)
.++++.+++.+...+.|.++.||.+++.+++.++...+. .....+++.+++.+.+.+++ ++
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~ 447 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KS 447 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SC
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-CC
Confidence 788999999999999999999999999999988875432 12256788899999999999 88
Q ss_pred cchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHhhhhh-hHhhHhhhhHHHHH
Q 001307 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--MVQEGALTALASVADSSQEH-FQKYYDAVMPFLKA 551 (1103)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~--~v~~~al~al~~l~~~~~~~-~~~~~~~i~~~l~~ 551 (1103)
+.+|..++.++..++..++. .+.+|++.+++.++..+.+... .++..++.+++.+....+.. |.||++.++|.+..
T Consensus 448 ~~vr~~~~~~L~~l~~~~~~-~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~ 526 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 526 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHchh-hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH
Confidence 99999999999999998764 4679999999999999998764 89999999999998766554 89999999999998
Q ss_pred HHhhcCCcccchhhhHHHHHHHHHHHhhCh------hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc
Q 001307 552 ILVNATDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1103)
Q Consensus 552 ~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~------~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1103)
.+.. ....+|..++.+++.++..+|. ..+.||.+.+++.++..... .+.+..+|..++.+++.++...|
T Consensus 527 ~l~d----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~-~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 527 CVGD----PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA-ADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHTC----SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC-SSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHcc----cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhC
Confidence 8743 2345677889999999998884 37899999999999885532 12344589999999999999999
Q ss_pred CCcccchhhhhHHHHHhcccCCCcc---------ccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHH
Q 001307 626 QDFLPYMSVVMPPLLQSAQLKPDVT---------ITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLC 696 (1103)
Q Consensus 626 ~~~~p~l~~i~~~ll~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~ 696 (1103)
+.+.+|++.+++.+.+.+.... .+ +...- ...+-+.+-...+..-.-.++......|..|+.+++
T Consensus 602 ~~~~~~~~~~l~~L~~~l~~e~-~r~~~~~al~~i~~~~-----~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~ 675 (1230)
T 1u6g_C 602 DNLGSDLPNTLQIFLERLKNEI-TRLTTVKALTLIAGSP-----LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675 (1230)
T ss_dssp GGCCTHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHTTCS-----SCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHhCc-----cccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999988875321 00 00000 000000000000000000001112235778999999
Q ss_pred HHHHHhhhhcc-ccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHH------------HHcCCCCCCCHHHHHH
Q 001307 697 CYADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA------------IEKGLAPGRNESYVKQ 763 (1103)
Q Consensus 697 ~l~~~~~~~~~-p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~------------~~~g~~~~~~~~~~~~ 763 (1103)
.++...+..+. +++..++..+.+++++. +..++..+..++..++...... ...-............
T Consensus 676 ~l~~~~~~~~~~~~v~~~l~~ll~ll~~~-D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 754 (1230)
T 1u6g_C 676 ILIKNYSDSLTAAMIDAVLDELPPLISES-DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754 (1230)
T ss_dssp HHHHHCCTTCCHHHHHHHHTTCGGGSCTT-CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHH
T ss_pred HHHhcccccCCHHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHH
Confidence 99999876543 45566666666666543 6778888888888776421100 0000000000000111
Q ss_pred ---HHHHH---------HHHHHHHHccC--------CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-------
Q 001307 764 ---LSDFI---------IPALVEALHKE--------PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIK------- 816 (1103)
Q Consensus 764 ---~~~~i---------~~~l~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~------- 816 (1103)
++..+ ++.++..+... ....++..+..++..++...|+... ..++.++..+.
T Consensus 755 l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 833 (1230)
T 1u6g_C 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDS 833 (1230)
T ss_dssp HHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHHhCCCCccHH
Confidence 11100 11122222110 1223344455556655555444110 10000000000
Q ss_pred ------HHHHHHHHhHHHHHHhhcCCCCC--hHhhhhhh-hhhhhHHHHHHHHHHHHHHHHHH-----------------
Q 001307 817 ------QVITASSSRKRERAERAKAEDFD--AEESELIK-EENEQEEEVFDQVGEILGTLIKT----------------- 870 (1103)
Q Consensus 817 ------~~l~~~~~~~~~~~~~~~~e~~d--~~~~~~~~-~~~e~~~~~~~~~~~~l~~l~~~----------------- 870 (1103)
..+... .+ . .+.. ++-.+.+. --.+....|+..++.++|.++..
T Consensus 834 ~~~~~l~~l~~~-g~-------~--~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~ 903 (1230)
T 1u6g_C 834 IRLLALLSLGEV-GH-------H--IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP 903 (1230)
T ss_dssp HHHHHHHHHHHH-HH-------H--SCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHh-cc-------c--CCCcccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccc
Confidence 000000 00 0 0000 00000000 00111234455555555544322
Q ss_pred ----------------h-hhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHH----HHHH
Q 001307 871 ----------------F-KAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYL----PFLL 929 (1103)
Q Consensus 871 ----------------~-~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l----~~l~ 929 (1103)
. +....|+...+++.+...+. +.+...|..+..++|.++...+....|.+...+ +...
T Consensus 904 ~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~-~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R 982 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE-CAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYAR 982 (1230)
T ss_dssp GGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC-CSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHH
T ss_pred hhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhc-CcchhhHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHH
Confidence 2 22345666667777776653 344567777888888887775432222111111 0111
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcC
Q 001307 930 EAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCL 1007 (1103)
Q Consensus 930 ~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~l 1007 (1103)
..++.+++.+....+..+.++++.+++.+...+.++ +..+|++|+.+++.++...|+.+ .+++++|.++..+
T Consensus 983 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~------~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~ 1056 (1230)
T 1u6g_C 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP------DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNET 1056 (1230)
T ss_dssp HHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSS------STHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHh
Confidence 134444454544555566677777777777777765 56799999999999999998876 6788999999988
Q ss_pred CCCCcH-----------------HHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001307 1008 PIKGDL-----------------IEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNL 1070 (1103)
Q Consensus 1008 p~~~D~-----------------~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 1070 (1103)
+++.+. +..+.+|+++..++......+ ++..++..+...+ + ++.+.+.....+
T Consensus 1057 ~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i------~~~~~~~~~~~gl---~-d~~di~~~~~~~ 1126 (1230)
T 1u6g_C 1057 KVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL------DIFEFLNHVEDGL---K-DHYDIKMLTFLM 1126 (1230)
T ss_dssp SCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS------CHHHHHHHHHHTT---S-SCHHHHHHHHHH
T ss_pred cccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHccc---C-chHHHHHHHHHH
Confidence 766552 566789999999998765433 2444444444443 2 257899999999
Q ss_pred HHHHHhhCChhhHHHHHhcCCHHHHHHH
Q 001307 1071 LKQLQQTLPPATLASTWSSLQPQQQLAL 1098 (1103)
Q Consensus 1071 l~~l~~~~~~~~~~~~~~~l~~~~~~~l 1098 (1103)
+.+|....|+. +.+-+.+|-..-++.|
T Consensus 1127 l~~l~~~~~~~-~~~~~~~~~~~~~~~l 1153 (1230)
T 1u6g_C 1127 LVRLSTLCPSA-VLQRLDRLVEPLRATC 1153 (1230)
T ss_dssp HHHHHHSCCHH-HHTTTTTTHHHHHHHH
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence 99999999886 4344444434444333
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.2e-36 Score=375.94 Aligned_cols=777 Identities=12% Similarity=0.152 Sum_probs=500.1
Q ss_pred CCChHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCC--ChhHHHHHHHHHHHhcccCCCCcc
Q 001307 18 GPDSAPFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSP--HPEARAMAAVLLRKLLTRDDSFLW 93 (1103)
Q Consensus 18 ~~d~~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~--~~~~R~~a~~~L~~~i~~~~~~~w 93 (1103)
.||.+++.++++..++| |++.|++|+++|+++++ .|++| .....++.+++ ++.+|.+|+.+|++.++
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~aw-~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~------- 72 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRS-SSTGW-KICHEIFSEKTKYKPSTRLICLQTLSEKVR------- 72 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-ChhHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------
Confidence 47889999999888887 68999999999999999 78876 77888887643 79999999999999987
Q ss_pred ccCCHH----HHHHHHHHHHHHHhhc----chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCH-hHHHHHH
Q 001307 94 PRLSLH----TQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAF 164 (1103)
Q Consensus 94 ~~l~~~----~~~~ik~~ll~~l~~e----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al 164 (1103)
.++++ .+..+|+.+++.+... .++.+|++++.+++.++++++| ..||++++.+.+.+++++. ......+
T Consensus 73 -~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~L 150 (980)
T 3ibv_A 73 -EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYL 150 (980)
T ss_dssp -HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHH
Confidence 46788 9999999999999862 3678999999999999999998 7999999999999876543 3344556
Q ss_pred HHHHHhhhhhhhh------------------chhh-----HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001307 165 LIFAQLSQYIGDT------------------LTPH-----LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1103)
Q Consensus 165 ~~l~~l~~~~~~~------------------l~~~-----~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1103)
+++..+.+++.+. +... .+.++.++....... ++.++..+++|+.+++.+++-
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-~~~l~~~~L~~l~s~i~wi~~--- 226 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-NYGTVGLCLQVYAQWVSWINI--- 226 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCH---
T ss_pred HHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHhhcCH---
Confidence 6677666764321 1111 233333444443434 778889999999999988641
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc---------------------------------------
Q 001307 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE--------------------------------------- 262 (1103)
Q Consensus 222 ~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~--------------------------------------- 262 (1103)
..+.. +.+++.+...+. +++.+..+++||.+++...
T Consensus 227 -~~i~~--~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~ 301 (980)
T 3ibv_A 227 -NLIVN--EPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLI 301 (980)
T ss_dssp -HHHHC--HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHH
T ss_pred -Hhhhc--chHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHH
Confidence 11111 234444444443 2444444455444433211
Q ss_pred -------hH--------------HHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccch---hhhcchhh
Q 001307 263 -------PR--------------FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG---MMRKLPQF 318 (1103)
Q Consensus 263 -------~~--------------~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~~~~~~ 318 (1103)
.. ...+++..+++.++....+ .++++...+++||..++...++.+. ......++
T Consensus 302 ~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~--~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~ 379 (980)
T 3ibv_A 302 NAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD--DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEF 379 (980)
T ss_dssp HHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC--SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHH
T ss_pred HHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 00 1124555677777777754 3678888899999988864221111 11234578
Q ss_pred HHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchH----HHHHHHHHhhc---CCCh
Q 001307 319 INRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP----VASEQLPAYLA---APEW 391 (1103)
Q Consensus 319 ~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---~~~~ 391 (1103)
+.++++.++..|.+.+++ +|..++ |+||+++...++.-...+......+|++.+++ .+.+.+.+.+. +.+|
T Consensus 380 l~~Ll~~li~k~~yp~d~-~~~~~~-d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W 457 (980)
T 3ibv_A 380 LKSLLEAIIKKMKYDESQ-EWDDDP-DSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSW 457 (980)
T ss_dssp HHHHHHHHHHTTSCCTTC-CCCCCS-SSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHccCCCcc-cccccc-chhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 899999999999987654 475421 11222222223221124444444555566777 66666666653 4579
Q ss_pred HHHHHHHHHHHHHHhhcHHHH------HHhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001307 392 QKHHAALIALAQIAEGCAKVM------VKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1103)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~------~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 460 (1103)
+.+++++++++.++|++.... .++++.+++.+...+. +++|.||..+++++|++++++..+ .+|++.
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l~~ 535 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 999999999999999976411 1345566666655543 899999999999999999999764 478999
Q ss_pred hHHHHHh--hccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC---------------------h
Q 001307 461 VLPALAG--AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK---------------------Q 517 (1103)
Q Consensus 461 il~~l~~--~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~---------------------~ 517 (1103)
+++.++. ++.+ ++++||.+|+.++.+|++.+++. +.||++.++..+..++.... .
T Consensus 536 ~L~~ll~~~gl~~-~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (980)
T 3ibv_A 536 LIEYFVGPRGIHN-TNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDF 613 (980)
T ss_dssp HHHHHTSTTTTTC-CCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTH
T ss_pred HHHHHhccccccC-CChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCc
Confidence 9999999 9988 88999999999999999999965 78999999999988776310 1
Q ss_pred hHHHHHHHHHHHHHHhhh---hhhHhhHhhhhHHHHHHHhhcC----Cc-ccchhhhHHHHHHHHHHHhhCh--hh---h
Q 001307 518 MVQEGALTALASVADSSQ---EHFQKYYDAVMPFLKAILVNAT----DK-SNRMLRAKSMECISLVGMAVGK--DK---F 584 (1103)
Q Consensus 518 ~v~~~al~al~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~----~~-~~~~lr~~a~~~l~~i~~~~~~--~~---~ 584 (1103)
.-+-..++++|.++...+ +....|++.+++.+.+.++..- .. +....-...+.+++.+++.+.. .. .
T Consensus 614 ~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~ 693 (980)
T 3ibv_A 614 NSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAW 693 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcH
Confidence 235668999999998754 3455788999988777666421 11 1111112456677888776531 11 3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCC
Q 001307 585 RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 664 (1103)
Q Consensus 585 ~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~ 664 (1103)
.....++++.++...+ .+..+..+++.+..+|.++..++|.++.||+|.+++.++...+..+
T Consensus 694 ~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e----------------- 755 (980)
T 3ibv_A 694 LASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE----------------- 755 (980)
T ss_dssp HHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT-----------------
T ss_pred HHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH-----------------
Confidence 3345566666655333 2234567999999999999999999999999999999996543210
Q ss_pred CcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcc----ccccc--CCHHHHHH--HHHh
Q 001307 665 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP----LLKFY--FHEEVRKA--AVSA 736 (1103)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~----~l~~~--~~~~vr~~--a~~~ 736 (1103)
-...+.+++.++...+..+.|.+..++..++. .+... ..+.+|.. -.++
T Consensus 756 -----------------------~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~ 812 (980)
T 3ibv_A 756 -----------------------LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKS 812 (980)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 12245688889888888888877666655432 33321 01233311 1112
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Q 001307 737 MPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLL-DEGQVRSIVDEI 815 (1103)
Q Consensus 737 l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~~~~~~~~~l 815 (1103)
...++..+. ..+-..--.++..+..++.++..++....+-+|+.....++..+..++...|..- .++.-.-+++ +
T Consensus 813 ~~~fl~~i~---~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~ 888 (980)
T 3ibv_A 813 YISFILQLL---NKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-L 888 (980)
T ss_dssp HHHHHHHHH---HTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-H
T ss_pred HHHHHHHHH---hCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-H
Confidence 222222221 1110000012223445666666666654444677778888999999998876421 1122222233 3
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHH-HHHh
Q 001307 816 KQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE-LSSY 885 (1103)
Q Consensus 816 ~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~ 885 (1103)
..+.-..- -+..+|-.|. ....+...++.++..+....|+.|..|+.. ++|.
T Consensus 889 ~~~~f~~p----------~~~~f~~~Da--------q~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~ 941 (980)
T 3ibv_A 889 TPLCFEMP----------VNPNFNTRDG--------QSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPT 941 (980)
T ss_dssp HHHHHHGG----------GC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhh----------cCCCCChhhH--------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCc
Confidence 32222111 1122333221 334577788899999999999888888755 6664
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3e-35 Score=373.02 Aligned_cols=748 Identities=15% Similarity=0.151 Sum_probs=544.2
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcccC------CCC
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~------~~~ 140 (1103)
++++++|+.|...|++.- .+....+...|++.+.++ .+..+|..++.++........+ ...
T Consensus 12 s~d~~~r~~A~~~L~~~~------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 678999999999998732 234567778889998874 4678999999988876542210 135
Q ss_pred cchhHHH--------HHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHH
Q 001307 141 WPELLPF--------MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVIN 211 (1103)
Q Consensus 141 w~~ll~~--------l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~ 211 (1103)
|+.+.+. +.+.+.++++.. ..+..+++.++..... ..+.+.+++.+...+.++. ++.+|..+++++..
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7655444 778888777767 8888999988876422 1356778888888888743 68999999999999
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHccchHHHHHh--HHHHHHHHHHhhcCCCcc
Q 001307 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLE 287 (1103)
Q Consensus 212 l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~ 287 (1103)
++.... .+.+...++.+++.+...+.++ ++.+|..+++++..++...+..+... ...+++.+...+. +.+
T Consensus 157 l~~~~~----~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~ 230 (876)
T 1qgr_A 157 ICQDID----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPD 230 (876)
T ss_dssp HHHHSC----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSS
T ss_pred HHHhcC----HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC--CCC
Confidence 998752 2346677788888888888776 68899999999999886544332211 1235555555553 456
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHH-HHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHH
Q 001307 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1103)
Q Consensus 288 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~ 366 (1103)
.++|..+++++..+++. .+. .+.+++. .+++.++..+.+.+ ...+..+.+.+..++
T Consensus 231 ~~vr~~a~~~l~~l~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~-----------------~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSL---YYQ---YMETYMGPALFAITIEAMKSDI-----------------DEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---SGG---GCHHHHTTTHHHHHHHHHTCSS-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHHHH
Confidence 88999999999999983 442 3456777 78888777653221 112333444444443
Q ss_pred HHc-------------------CCCc----chHHHHHHHHHhhc-------CCChHHHHHHHHHHHHHHhhcHHHHHHhH
Q 001307 367 IAL-------------------GGNT----IVPVASEQLPAYLA-------APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1103)
Q Consensus 367 ~~~-------------------~~~~----~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1103)
... +... .++.+++.+.+.+. +.+|..|.+|..+++.++..+++ ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 364 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH
Confidence 321 0001 12344555544443 45799999999999999987764 457
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
+.+++.+...+.|+++++|.+|++++|.+++.+.+.....+++.++|.++..++| +++.||..|++++..+++.++...
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhc
Confidence 7889999999999999999999999999999887443357899999999999999 899999999999999999887543
Q ss_pred -ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--------------hhhHhhHhhhhHHHHHHHhhcCCccc
Q 001307 497 -LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--------------EHFQKYYDAVMPFLKAILVNATDKSN 561 (1103)
Q Consensus 497 -l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~--------------~~~~~~~~~i~~~l~~~l~~~~~~~~ 561 (1103)
..+|++.+++.++..+.+. +.+|..++.+++.++...+ ..+.||++.++|.|...+..... +.
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~-~~ 521 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG-HQ 521 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS-CS
T ss_pred ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc-ch
Confidence 4689999999999999875 8899999999999998876 24789999999999998865322 34
Q ss_pred chhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcC------C-CCCCC-----chhhHHHHHHHHHHhHhc-CCc
Q 001307 562 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------Q-METDD-----PTTSYMLQAWARLCKCLG-QDF 628 (1103)
Q Consensus 562 ~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~------~-~~~~~-----~~~~~~~~~~~~l~~~~~-~~~ 628 (1103)
..+|..++++++.++..+| ..+.+++..+++.++..... . ...++ .++..++.+++.++..+| .++
T Consensus 522 ~~~r~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSA-KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHCc-hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 5688999999999999999 46888999999888764321 1 11122 245677888899998888 888
Q ss_pred ccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccc
Q 001307 629 LPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP 708 (1103)
Q Consensus 629 ~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p 708 (1103)
.||++.++|.+++.++...
T Consensus 601 ~~~~~~l~~~l~~~l~~~~------------------------------------------------------------- 619 (876)
T 1qgr_A 601 LQISDVVMASLLRMFQSTA------------------------------------------------------------- 619 (876)
T ss_dssp HTTHHHHHHHHHHHC-----------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHhcc-------------------------------------------------------------
Confidence 8999988888888773210
Q ss_pred cHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Q 001307 709 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASM 788 (1103)
Q Consensus 709 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 788 (1103)
+ ...+|..++.+++.++..... ...+++..++|.+...+....+.+++..+
T Consensus 620 -------------~---~~~v~~~a~~~l~~l~~~~~~-------------~~~~~~~~~~~~l~~~l~~~~~~~vr~~a 670 (876)
T 1qgr_A 620 -------------G---SGGVQEDALMAVSTLVEVLGG-------------EFLKYMEAFKPFLGIGLKNYAEYQVCLAA 670 (876)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHGG-------------GGGGGHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred -------------C---CCCccHHHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 0 024566677777777665311 12234556677777777665577899999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001307 789 LDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLI 868 (1103)
Q Consensus 789 ~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~ 868 (1103)
+.++..++..+|..+ .++++.+++.+...+.. ++.+ ..++..++.+++.++
T Consensus 671 ~~~l~~l~~~~~~~~-~~~~~~i~~~l~~~l~~--------------~~~~--------------~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 671 VGLVGDLCRALQSNI-IPFCDEVMQLLLENLGN--------------ENVH--------------RSVKPQILSVFGDIA 721 (876)
T ss_dssp HHHHHHHHHHHGGGG-HHHHHHHHHHHHHHHTC--------------TTSC--------------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhCC--------------cccc--------------HHhhHHHHHHHHHHH
Confidence 999999998887532 23455555554444321 1111 125778999999999
Q ss_pred HHhhhchhhhHHHHHHhhhhhccCCC---C-------HHHHHHHHHHHHHHHhhhhh----------hhhhhHHhHHHHH
Q 001307 869 KTFKAAFLPFFDELSSYLTPMWGKDK---T-------AEERRIAICIFDDVAEQCRE----------AALKYYETYLPFL 928 (1103)
Q Consensus 869 ~~~~~~~~~~~~~l~~~l~~~l~~~~---~-------~~~r~~a~~~l~~l~~~~~~----------~~~~~~~~~l~~l 928 (1103)
...|+.|.+|++.++|.+...+.... + ...|..++.+++.+++..|. .+.+|++.+++.+
T Consensus 722 ~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 801 (876)
T 1qgr_A 722 LAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFI 801 (876)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999888764322 1 26788888999999888764 4467888887665
Q ss_pred HH-------------HHHHHHHHHHhhcCC-CchHH-HHHHHHHHHH-hhcCCCCCChhhhhHHHHHHHHHHHHHhhcC
Q 001307 929 LE-------------AAVYGLGVCAEFGGS-VVKPL-VGEALSRLNV-VIRHPNALQPENLMAYDNAVSALGKICQFHR 991 (1103)
Q Consensus 929 ~~-------------~a~~~lg~l~~~~~~-~~~~~-~~~~l~~L~~-~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 991 (1103)
.. .|+.++|.++...|. .+.+| ...+++.|.. .+.++ +..+|.+|+.|+|.+....+
T Consensus 802 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~------~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 802 DHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK------TNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC------CHhHHHHHHHHHHHHHHhhc
Confidence 32 788999999998888 78888 4567777777 77554 57899999999999876544
No 12
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.5e-34 Score=354.89 Aligned_cols=717 Identities=14% Similarity=0.191 Sum_probs=473.6
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
||.++|++++..+++|+++.|++|+++|+++++ +|+.| ..+.+++.++.++.+|++|++.|++.+.++ |..+++
T Consensus 13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp~aw-~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~----W~~L~~ 86 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLPN 86 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CTTGG-GGHHHHHHHCCCHHHHHHHHHHHHHHHHHH----GGGSCH
T ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-CccHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh----hhcCCH
Confidence 899999999999999999999999999999999 78875 667888877889999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhcc--------hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 001307 99 HTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~--------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (1103)
+.+..+|+.+++.+.... .+.++++++.+++.++++++| ..||++++.+.+.++++ +..++..+.+|..+
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSSS-VNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Confidence 999999999999987521 367889999999999999999 78999999999998754 45688899999999
Q ss_pred hhhhhh----------------hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcc--------------
Q 001307 171 SQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-------------- 220 (1103)
Q Consensus 171 ~~~~~~----------------~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-------------- 220 (1103)
.+++.+ .+...++.+++.+...+.+..+..+...+++++.+++.+++-..
T Consensus 165 ~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~ 244 (1023)
T 4hat_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF 244 (1023)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHH
Confidence 887532 12334555666666555443344555555555555554432100
Q ss_pred ----------------------------hHhHHHhhHHHHHHHH-H----------HHHh---CCCHHHHHHHHHHHHHH
Q 001307 221 ----------------------------DRDRFQDLLPLMMRTL-T----------ESLN---NGNEATAQEALELLIEL 258 (1103)
Q Consensus 221 ----------------------------~~~~~~~~ip~ll~~l-~----------~~l~---~~~~~~~~~~~~~l~~l 258 (1103)
..+.+..+++.+++.+ . .... ..+.+.....+..+.++
T Consensus 245 L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 245 MTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp HHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 0011112222222222 0 1111 11233444455566655
Q ss_pred HccchHHH------HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC
Q 001307 259 AGTEPRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1103)
Q Consensus 259 ~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1103)
.+.+...+ .+.+...+..++.+.. ..+.++-..++++|..+++..-..|.....+.+++.++++.++..|..
T Consensus 325 ~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~--~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~ 402 (1023)
T 4hat_C 325 LARNRALLESDESLRELLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVR 402 (1023)
T ss_dssp HHHHGGGGTSCGGGHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55544333 2223333445665543 346788889999999998842111211223568889999999999998
Q ss_pred CCC-------CcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcC--CChHHHHHHHHHHHH
Q 001307 333 IED-------DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQ 403 (1103)
Q Consensus 333 ~~~-------~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~ 403 (1103)
+++ +.+|...... |.++...++...++|..++...| ..+++.+++.+.+.+.+ .+|+.|+|+++++|+
T Consensus 403 P~e~~ive~d~~~~~~e~~~--d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~ga 479 (1023)
T 4hat_C 403 PEEVLVVENDEGEIVREFVK--ESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1023)
T ss_dssp CTTCCEEECTTSCEEECSSC--CGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH
T ss_pred CcccccCCCCCccHHHHhcc--chHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 762 2344321111 11222345555688888877766 57888888888877764 689999999999999
Q ss_pred HHhhcHH-HHHHhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcch
Q 001307 404 IAEGCAK-VMVKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1103)
Q Consensus 404 l~~~~~~-~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1103)
+++++.+ ...++++++++.++..+. |++++||..++|++|++++++..+ ..+++.+++.++..+.+ ++++|
T Consensus 480 Ia~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~--~~~L~~vl~~L~~~l~~-~~~~v 556 (1023)
T 4hat_C 480 ISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1023)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC--HHHHHHHHHHHHHHTTC-SCHHH
T ss_pred HHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhhc-CCHHH
Confidence 9998765 367889999998888775 577889999999999999998655 36899999999999988 78999
Q ss_pred HHHHHHHHHHHHhcCCccc-------ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh--hHhhHhhhhHH
Q 001307 478 QAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH--FQKYYDAVMPF 548 (1103)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~-------l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~--~~~~~~~i~~~ 548 (1103)
+..||+++..+++.++... ..||++.++..+......-+..-+..++.++|.++...+.. ...|++.+++.
T Consensus 557 ~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~ 636 (1023)
T 4hat_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1023)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHh
Confidence 9999999999999887542 25899999999999988777888899999999999988743 44688888888
Q ss_pred HHHHHhhcC-----Cc------ccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 001307 549 LKAILVNAT-----DK------SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAW 617 (1103)
Q Consensus 549 l~~~l~~~~-----~~------~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~ 617 (1103)
+...++.-. ++ +...--...++|++.++.++| ..|.|++..+++.++++... .-+.+
T Consensus 637 ~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-~~f~~~~~~i~~~~l~~y~~-----------~s~~i 704 (1023)
T 4hat_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRA-----------VSSMI 704 (1023)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 887765421 10 001112234556666666666 55666666666655543220 00111
Q ss_pred HHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHH
Q 001307 618 ARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCC 697 (1103)
Q Consensus 618 ~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~ 697 (1103)
.+.+..-|...... | .+| ..---|...++.+..
T Consensus 705 ~~~~~~~g~~~~~~-~---------------------------------------------~~r-~~r~ik~~il~l~~~ 737 (1023)
T 4hat_C 705 SAQVAAEGLIATKT-P---------------------------------------------KVR-GLRTIKKEILKLVET 737 (1023)
T ss_dssp HHHHHHHCGGGGGS-H---------------------------------------------HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCchhhcc-H---------------------------------------------HHH-HHHHHHHHHHHHHHH
Confidence 11111111111000 0 000 000123444555555
Q ss_pred HHHHhhhh---ccccHHHHHHHhcccccccCCHHHHHHHH-HhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Q 001307 698 YADELKEG---FFPWIDQVAPTLVPLLKFYFHEEVRKAAV-SAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV 773 (1103)
Q Consensus 698 l~~~~~~~---~~p~~~~~~~~l~~~l~~~~~~~vr~~a~-~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~ 773 (1103)
++....+. -..+++.+++.++.-+... .+..|...+ .++..++... | ....+.+..+++.++...+
T Consensus 738 ~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~-~~~~r~~~vL~l~s~iv~~~------~---~~~~~~~~~il~~vf~~Tl 807 (1023)
T 4hat_C 738 YISKARNLDDVVKVLVEPLLNAVLEDYMNN-VPDARDAEVLNCMTTVVEKV------G---HMIPQGVILILQSVFECTL 807 (1023)
T ss_dssp HHHHCSCHHHHHHHTHHHHHHHHHHHHHHS-CGGGCCHHHHHHHHHHHHHH------G---GGCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHhHHHHHHHHHHHHHhC-ChhhccHHHHHHHHHHHHHH------H---HhhhhhhHHHHHHHHHHHH
Confidence 55544210 1112333333333222111 233443322 2333344333 1 1245667778888887777
Q ss_pred HHHccC--CcHHHHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHH
Q 001307 774 EALHKE--PDTEICASMLDSLNECIQISGP---LLDEGQVRSIVDEIKQVIT 820 (1103)
Q Consensus 774 ~~~~~~--~~~~~~~~~~~~l~~~~~~~g~---~~~~~~~~~~~~~l~~~l~ 820 (1103)
..+.++ ..++.+...+.-+..+...+-. .+.++.+..+++.+.-.++
T Consensus 808 ~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~ 859 (1023)
T 4hat_C 808 DMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFK 859 (1023)
T ss_dssp HHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcC
Confidence 777653 4689999999999998888654 2456777777776655544
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.1e-34 Score=363.62 Aligned_cols=671 Identities=15% Similarity=0.162 Sum_probs=521.3
Q ss_pred cCCChHHHHHHHHHHHHhhhc-----CchH---HHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHH
Q 001307 32 MSTSNEQRSEAELLFNLCKQQ-----DPDS---LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSS 103 (1103)
Q Consensus 32 ~s~d~~~r~~Ae~~L~~~~~~-----~p~~---~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ 103 (1103)
.+.+..+|..|--.|+...+. +++. .-..+++.+. ++++.+|..++..+.......+...|..
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~wp~-------- 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPD-------- 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTTCTT--------
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCccccHH--------
Confidence 456778999999888865432 1211 2333444443 6778999999999999887764556744
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC-------CCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh
Q 001307 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILP-------ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1103)
Q Consensus 104 ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~-------~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (1103)
+...|++.+.+ .+..+|..+..+++.++...-+ ...++.++|.+.+.++++++.+|..|+.++..+....+.
T Consensus 129 ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 34456677776 5888999999999998875321 123678899999999999999999999999988876666
Q ss_pred hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001307 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1103)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~ 256 (1103)
.+..+++.+++.+...++++ +..+|..+++++..++... ...+...++.+++.+...+++.++.+|..+++.|.
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~-----~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVR-----MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHC-----HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 66667888999999999997 9999999999999999864 23345556677777777888889999999999999
Q ss_pred HHHcc--chHHHHHhHHHHHHHHHHhhc-----------CC--C-------cchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001307 257 ELAGT--EPRFLRRQLVDVVGSMLQIAE-----------AE--S-------LEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1103)
Q Consensus 257 ~l~~~--~~~~~~~~~~~l~~~l~~~~~-----------~~--~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 314 (1103)
.+++. ....+.+++..+++.++..+. +. + .+..+|..|...+..++.. .+
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~---~~----- 353 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV---YR----- 353 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH---HG-----
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh---cc-----
Confidence 99874 234567788888888887762 20 1 1224688999999998873 22
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhcCCChH
Q 001307 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQ 392 (1103)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~ 392 (1103)
...++.++|.+...+.+. ++..+..|..+++.++...+. ...++.+++.+...++++++.
T Consensus 354 -~~~~~~l~~~l~~~l~~~-----------------~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 354 -DELLPHILPLLKELLFHH-----------------EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp -GGGHHHHHHHHHHHHTCS-----------------SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHH
T ss_pred -HHHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 135566777776666422 233456777788887754431 135677888888999999999
Q ss_pred HHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001307 393 KHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 393 ~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1103)
+|.+++.+++.+++..+. ....++..+++.++..+.|+++.||..|+++++.+++..++.+ .+|++.+++.++..+++
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh-HhHHHHHHHHHHHHHHH
Confidence 999999999999887654 2456889999999999999999999999999999999988876 78999999999999987
Q ss_pred CCCcchHHHHHHHHHHHHhcCCcccc-cCchHHHHHHHHHH---hhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhH
Q 001307 472 FQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVL---LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMP 547 (1103)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~l-~~~l~~ll~~L~~~---l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~ 547 (1103)
........+..++..+++..++... .+|++.+++.+++. +.+.++.++ .++.+++.++...|..|.||++.+++
T Consensus 495 -~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 495 -YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred -hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 5555556678888888877664421 24888999888854 445556665 79999999999999999999999998
Q ss_pred HHHHHHhhc-------------CCcccchhhhHHHHHHHHHHHhhChhhhhhhH--HHHHHHHHHHhcCCCCCCCchhhH
Q 001307 548 FLKAILVNA-------------TDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSY 612 (1103)
Q Consensus 548 ~l~~~l~~~-------------~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~--~~i~~~l~~l~~~~~~~~~~~~~~ 612 (1103)
.+...+... .+.++..++..+++.++.++..+| +.|.||+ +.+++.++...++ ....+|..
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~-~~~~~~~~~~~~~~~l~~~l~~---~~~~vr~~ 648 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG-GNIEQLVARSNILTLMYQCMQD---KMPEVRQS 648 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG-GGGHHHHHTCCHHHHHHHHTTC---SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh-HhHHHHhcCCcHHHHHHHHhCC---CChhHHHH
Confidence 777776542 111245578889999999999999 7899997 7889988886542 22458889
Q ss_pred HHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHH
Q 001307 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (1103)
Q Consensus 613 ~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~ 692 (1103)
++.+++.++..+|..|.||++.++|.+.+.+..+ + .+.+..|+
T Consensus 649 a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~--------------------~-----------------~~v~~~a~ 691 (852)
T 4fdd_A 649 SFALLGDLTKACFQHVKPCIADFMPILGTNLNPE--------------------F-----------------ISVCNNAT 691 (852)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT--------------------S-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc--------------------c-----------------hHHHHHHH
Confidence 9999999999999999999999999999988321 0 12366899
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHhccccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 001307 693 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1103)
Q Consensus 693 ~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 771 (1103)
.+++.++..++..+.||+..+++.+.+.+++. .+..++..++.+++.+... .++.+...+..+++.
T Consensus 692 ~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~-------------~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-------------CPQEVAPMLQQFIRP 758 (852)
T ss_dssp HHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH-------------CHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh-------------CHHHhCccHHHHHHH
Confidence 99999999999999999999999999988753 3568999999999998865 456677778899999
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001307 772 LVEALHKEPDTEICASMLDSLNECIQISGP 801 (1103)
Q Consensus 772 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1103)
+++.+..-.+.+.+..++.++..++..-++
T Consensus 759 ~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 759 WCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 999997655666788999999999988544
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5.7e-34 Score=360.59 Aligned_cols=755 Identities=14% Similarity=0.157 Sum_probs=553.4
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcc-----------
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNI----------- 135 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~----------- 135 (1103)
++++.+|+.|...|++.-.. .....-..+++.+.++ .+..+|..++..+....+..
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~------------~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSND------------NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHH------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhh------------CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 57899999999999883211 1233445677777754 47889998888877654321
Q ss_pred ----cCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 001307 136 ----LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1103)
Q Consensus 136 ----~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1103)
++...-..+.+.+++.+.+++...|..+..+++.++....+. ...+.+++.+...+.++.++.+|..++.++..
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111122244567777888888889999999999988764221 24678889999988874378999999999999
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHccchHHHH--HhHHHHHHHHHHhhcCCCcc
Q 001307 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLR--RQLVDVVGSMLQIAEAESLE 287 (1103)
Q Consensus 212 l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ 287 (1103)
+...+..... .+....+.+++.+...+.++ ++.+|..+++++..++......+. .....+++.+...+. +.+
T Consensus 162 l~~~~~~~~~--~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~ 237 (861)
T 2bpt_A 162 MCESADPQSQ--ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ--AED 237 (861)
T ss_dssp HHHTSSTTSS--TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT--CSC
T ss_pred HHHcCChhhh--HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc--CCC
Confidence 9986532110 12345566777777777776 789999999999988754433221 011235555555543 357
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHH-HHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHH
Q 001307 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1103)
Q Consensus 288 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~ 366 (1103)
..+|..+++.+..+++. .|. .+.+++. .+++.+...+.+. +...+..+.+++..++
T Consensus 238 ~~~r~~a~~~l~~l~~~---~~~---~~~~~l~~~l~~~~~~~~~~~-----------------~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 238 IEVQAAAFGCLCKIMSK---YYT---FMKPYMEQALYALTIATMKSP-----------------NDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHHHHHHHHHH---HGG---GCHHHHHHTHHHHHHHHTTCS-----------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHcCC-----------------cHHHHHHHHHHHHHHH
Confidence 88999999999999983 332 3445666 7777766654321 1123445556666555
Q ss_pred HHcC----------------C---CcchHHHHHHHHHhhcC-------CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001307 367 IALG----------------G---NTIVPVASEQLPAYLAA-------PEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1103)
Q Consensus 367 ~~~~----------------~---~~~~~~l~~~l~~~l~~-------~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1103)
.... + ...++.++|.+...+.. .+|..|.++..+++.++...++ ..++.++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~ 371 (861)
T 2bpt_A 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVL 371 (861)
T ss_dssp HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHH
T ss_pred HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHH
Confidence 4320 0 11234566666655552 4599999999999999876653 4577888
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc-ccC
Q 001307 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTP 499 (1103)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-l~~ 499 (1103)
+.+...+.++++.+|.+|++++|.+++...+....++++.++|.+++.+.| +++.||..++++++.+++.+++.. -.+
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 999999999999999999999999998775333368899999999999999 899999999999999998876542 157
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh----hhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHH
Q 001307 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ----EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1103)
Q Consensus 500 ~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i 575 (1103)
+++.+++.++..+.+. +.+|..++.+++.++..++ ..+.||++.+++.+...+.... ....+|..++++++.+
T Consensus 451 ~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d--~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 451 HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID--NEFNARASAFSALTTM 527 (861)
T ss_dssp THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC--cchHHHHHHHHHHHHH
Confidence 8999999999999876 8999999999999998775 5678999999999999886422 1246799999999999
Q ss_pred HHhhChhhhhhhHHHHHHHHHHHhcCC--C-----C-----CCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhc
Q 001307 576 GMAVGKDKFRDDAKQVMEVLMSLQGSQ--M-----E-----TDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l~~l~~~~--~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~ 643 (1103)
+...| +.+.+|+..+++.+++..... . . ....++..++.+++.++..+|.++.||++.+++.++..+
T Consensus 528 ~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 528 VEYAT-DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL 606 (861)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH
T ss_pred HHHcc-hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999 568899988888877643311 0 0 012356788999999999999999999999999999988
Q ss_pred ccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccc
Q 001307 644 QLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF 723 (1103)
Q Consensus 644 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~ 723 (1103)
+... .+ ..+..++.+++.++...+..|.||++.+++.+...+++
T Consensus 607 ~~~~------------------~~------------------~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 650 (861)
T 2bpt_A 607 EKKD------------------SA------------------FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ 650 (861)
T ss_dssp HSTT------------------GG------------------GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC
T ss_pred ccCC------------------CC------------------cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 5311 00 01456788999999999999999999999999988864
Q ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHhCCC
Q 001307 724 YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE-PDTEICASMLDSLNECIQISGPL 802 (1103)
Q Consensus 724 ~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 802 (1103)
.++++|..++.+++.++.... +....++..+++.++..+.++ .+.+++..++.++..++..+|..
T Consensus 651 -~~~~vr~~a~~~l~~l~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 651 -VDSPVSITAVGFIADISNSLE-------------EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp -TTSHHHHHHHHHHHHHHHHTG-------------GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred -ccHHHHHHHHHHHHHHHHHhc-------------hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 367899999999988886541 124566778888888887765 34789999999999999988763
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh---hchhhhH
Q 001307 803 LDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFK---AAFLPFF 879 (1103)
Q Consensus 803 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~---~~~~~~~ 879 (1103)
+ .++++.+++.+...+.. ..+.+++|. .+....++..+.++++.++...| +.+.||+
T Consensus 717 ~-~~~l~~~l~~l~~~~~~-------------~~~~~d~d~------~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~ 776 (861)
T 2bpt_A 717 F-IPYLNDIMALCVAAQNT-------------KPENGTLEA------LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV 776 (861)
T ss_dssp G-HHHHHHHHHHHHHHHTC-------------CCSSSSHHH------HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH
T ss_pred H-HHHHHHHHHHHHHHHhc-------------CCCCCChHH------HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 2 34555555555443321 011111111 12335688999999999999888 5688999
Q ss_pred HHHHHhhhhhccCC--C-CHHHHHHHHHHHHHHHhhh-hhhhhhhHH-hHHHHHHH--------------HHHHHHHHHH
Q 001307 880 DELSSYLTPMWGKD--K-TAEERRIAICIFDDVAEQC-REAALKYYE-TYLPFLLE--------------AAVYGLGVCA 940 (1103)
Q Consensus 880 ~~l~~~l~~~l~~~--~-~~~~r~~a~~~l~~l~~~~-~~~~~~~~~-~~l~~l~~--------------~a~~~lg~l~ 940 (1103)
..+++.+...+... . ++.+|..|+.+++.++..+ |+.+.+|++ .++|.+++ +|.|++|.+.
T Consensus 777 ~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 777 GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 99999888876431 1 6789999999999999999 888888888 88888776 6788888776
Q ss_pred h
Q 001307 941 E 941 (1103)
Q Consensus 941 ~ 941 (1103)
.
T Consensus 857 ~ 857 (861)
T 2bpt_A 857 R 857 (861)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=2.1e-36 Score=353.36 Aligned_cols=430 Identities=18% Similarity=0.295 Sum_probs=355.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CChhHHHHHHHHHHHhcccCC-------CCccc
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~a~~~L~~~i~~~~-------~~~w~ 94 (1103)
++.++|.+++|||+++|++||++|+++++++++.|...|++++.++ .++.+|++|+++||+.+.++| ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 5889999999999999999999999988743556779999999874 579999999999999998763 12378
Q ss_pred cCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC--CHhHHHHHHHHHHHhhh
Q 001307 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~ 172 (1103)
.++++.++.||+.+++.|.++ +..+ ++++.+|+.+++.++|.+.||+++|.+.+.++++ ++..|++++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999984 6677 9999999999999888679999999999999998 89999999999999998
Q ss_pred hh-hhhchhhHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001307 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1103)
Q Consensus 173 ~~-~~~l~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~ 250 (1103)
.. ++.+.++.+.+++.+...++++. +..||..|+++++.++.++....... ...+.+++.+...+.+++++++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE---SERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH---HHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 76 56667789999999999999863 68999999999999876542111111 122346677777777889999999
Q ss_pred HHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc------------cc---hhhhc
Q 001307 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER------------AP---GMMRK 314 (1103)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~------------~~---~~~~~ 314 (1103)
++++|..+++.++..+.+++. .+++.++..+. +.++++|..++++|..+++.... .+ .....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH--CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 999999999999998889998 99998887774 45789999999999999874200 00 00111
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHH
Q 001307 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1103)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1103)
..+++..++|.++..+.+.++ ++++++++.+..+..+++.++..+| +.+++.+++.+.+.+++++|+.|
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~----------d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r 383 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDE----------NDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS----------SCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhhhccHHHHHHHHhccc----------ccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHH
Confidence 234668889988888765422 1223456778889999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcc
Q 001307 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMD 470 (1103)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l~ 470 (1103)
++|+.+++.+++++. +.+.++++.++|.+.+.+.|+++.||.+|+++|+++++.+++.+ ..+|++.+++.+++.|+
T Consensus 384 ~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999999999999876 45567889999999999999999999999999999999988765 35789999999988775
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.8e-30 Score=317.42 Aligned_cols=520 Identities=16% Similarity=0.234 Sum_probs=369.2
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
+|.+.|++++..+++|+++.|++|+++|+++++ +|+.| ..+.+++.++.++.+|++|+..|++.+.++ |..+++
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw-~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~----W~~L~~ 98 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW-TRVDTILEFSQNMNTKYYGLQILENVIKTR----WKILPR 98 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH-HHHTCC---CCSHHHHHHHHHHHHHHHHHT----GGGSCH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh----hhhCCH
Confidence 688999999999999999999999999999999 79876 667788877889999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhh--------cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 001307 99 HTQSSLKSMLLQSIQL--------ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~--------e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (1103)
+.+..+|+.+++.+.. +.++.++++++.+++.++++++| ..||++++.+.+.+++ ++..++.++.+|..+
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L 176 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVILKLL 176 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 9999999999999875 13467889999999999999999 7899999999998864 446788899999999
Q ss_pred hhhhhh----------------hchhhHHHHHHHHHHhhCCCCChH----------------------------------
Q 001307 171 SQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPD---------------------------------- 200 (1103)
Q Consensus 171 ~~~~~~----------------~l~~~~~~l~~~l~~~l~~~~~~~---------------------------------- 200 (1103)
.+++.+ .+...++.+++.+...+....++.
T Consensus 177 ~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~ 256 (1073)
T 3gjx_A 177 SEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKF 256 (1073)
T ss_dssp HHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHT
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHh
Confidence 887432 122234445555544443322344
Q ss_pred -----HHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH-------------hCCCHHHHHHHHHHHHHHHccc
Q 001307 201 -----VKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL-------------NNGNEATAQEALELLIELAGTE 262 (1103)
Q Consensus 201 -----vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l-------------~~~~~~~~~~~~~~l~~l~~~~ 262 (1103)
+|.+|++|+..++..- .....+.+..++..++..+...+ .+.+++.....+..|.++++.+
T Consensus 257 L~~~~~r~aA~dcL~eIv~k~-~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~ 335 (1073)
T 3gjx_A 257 LNVPMFRNVSLKCLTEIAGVS-VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH 335 (1073)
T ss_dssp SSSHHHHHHHHHHHHHHHHSC-SGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444321 00011122222333333222211 1112334445566666666655
Q ss_pred hHHHH------HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhh--hc------c-----------chhhhcchh
Q 001307 263 PRFLR------RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR--ER------A-----------PGMMRKLPQ 317 (1103)
Q Consensus 263 ~~~~~------~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~--~~------~-----------~~~~~~~~~ 317 (1103)
...+. +.+...+..++.+... .+.++-..++++|..+.+.- +. . |.....+.+
T Consensus 336 ~~lIe~~p~~~~~l~~~l~~ll~~s~~--~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 413 (1073)
T 3gjx_A 336 GQLLEKRLNLREALMEALHYMLLVSEV--EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLT 413 (1073)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHH
Confidence 44432 3344455556666543 47888999999999997741 11 0 111112456
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCc-------cccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcC--
Q 001307 318 FINRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 388 (1103)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~w~~~~~e~e-------d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-- 388 (1103)
++.++...++..|..+++.- ..++++.| |.++...++...+++..++.. ++......+++.+.+.+.+
T Consensus 414 i~~~L~~vlI~~m~~P~ev~--i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l-~~~~~~~i~~~~l~~~~~~~~ 490 (1073)
T 3gjx_A 414 VLSKVRLLMVSRMAKPEEVL--VVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL-DYVDTEIIMTKKLQNQVNGTE 490 (1073)
T ss_dssp HHHHHHHHHHHTCCCSCCEE--EEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCCcccc--ccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCC
Confidence 77888888888888775421 11111111 111112455666777776643 3367777788887766653
Q ss_pred CChHHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001307 389 PEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDP-----HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~-----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il 462 (1103)
.+|..++++++++|+++....+ .-.++++++++.++.....+ .+.++...++++|++.+++..+. +|++.++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~--~~L~~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW--KFLKTVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH--HHHHHHH
Confidence 4699999999999999866554 34578999999888776443 45678888899999999997764 7899999
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc-------ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
..+++.+.+ +++.|+.+||.++..+++.|+... ..||+..++..+.+....-.+.-....+.++|.++...+
T Consensus 569 ~~L~~~m~~-~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p 647 (1073)
T 3gjx_A 569 NKLFEFMHE-THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT 647 (1073)
T ss_dssp HHHHHHTTC-CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence 999999998 899999999999999999987643 247999999998888887777778889999999999988
Q ss_pred hhh--HhhHhhhhHHHHHHHhh
Q 001307 536 EHF--QKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 536 ~~~--~~~~~~i~~~l~~~l~~ 555 (1103)
... ..|++.+|+.....++.
T Consensus 648 ~~~~~~~~i~~Lm~~~~~~w~~ 669 (1073)
T 3gjx_A 648 DQTVQEHLIEKYMLLPNQVWDS 669 (1073)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 643 56888888888777654
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.4e-29 Score=305.54 Aligned_cols=572 Identities=13% Similarity=0.152 Sum_probs=437.9
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHH
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (1103)
..+++.+.+ +++.+|..++..++.++....+...|++++|.+.+.. ++++.+|..+...++.+.+..+.. .+...+
T Consensus 13 ~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 13 AVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 467888887 6899999999999999886555457999999998877 677889999999999888765432 255677
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1103)
++.+...+.++ +..||..|..++..+...... + ...+.+++.+....+++++..|..++.++..++...+..
T Consensus 89 l~~L~~l~~~~-~~~vR~~a~~~L~~l~~~~~~----~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~ 160 (588)
T 1b3u_A 89 LPPLESLATVE-ETVVRDKAVESLRAISHEHSP----S---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160 (588)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHHHHTTSCH----H---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH
T ss_pred HHHHHHHHhCc-hHHHHHHHHHHHHHHHHHCCH----H---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 88888888886 999999999999999987631 1 122345556666667778889999999999988776643
Q ss_pred HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC
Q 001307 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (1103)
Q Consensus 266 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e 345 (1103)
. .+.+++.+...+. +.++.+|..+.+.+..+++. .+. ..+...++|.+...+.+.
T Consensus 161 ~---~~~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~---~~~-----~~~~~~l~~~l~~~~~d~------------ 215 (588)
T 1b3u_A 161 V---KAELRQYFRNLCS--DDTPMVRRAAASKLGEFAKV---LEL-----DNVKSEIIPMFSNLASDE------------ 215 (588)
T ss_dssp H---HHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHT---SCH-----HHHHHTHHHHHHHHHTCS------------
T ss_pred H---HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH---hcH-----HhHHHHHHHHHHHHhcCC------------
Confidence 3 4566777777664 45789999999999999883 221 134566777777665321
Q ss_pred CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001307 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 425 (1103)
Q Consensus 346 ~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~ 425 (1103)
++..+..+..++..++...+++...+.++|.+...+++++|.+|.+++.+++.++...+.. .+.+.+++.+..
T Consensus 216 -----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 288 (588)
T 1b3u_A 216 -----QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQN 288 (588)
T ss_dssp -----CHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHH
Confidence 2235667889999999888755666778888888899999999999999999998865431 245678888999
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHH
Q 001307 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1103)
Q Consensus 426 ~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~l 504 (1103)
.++|+++.||..|+++++.++..+++... ..+.+.++|.+...++| +++.||..++.+|..++..++.+. ..+.+
T Consensus 289 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l 364 (588)
T 1b3u_A 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVKSALASVIMGLSPILGKDN---TIEHL 364 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHHHHHHTTGGGGHHHHCHHH---HHHHT
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhHhH---HHHHH
Confidence 99999999999999999999998876431 15788999999999999 899999999999999998887542 35667
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhh
Q 001307 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKF 584 (1103)
Q Consensus 505 l~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~ 584 (1103)
++.+...+++.++.+|..++.+++.++...+.. .+.+.++|.+...+. +..+.+|..++++++.++..+|.+.+
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~~~~~ 438 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAE----DAKWRVRLAIIEYMPLLAGQLGVEFF 438 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHcCHHHH
Confidence 888888889889999999999999998876643 245677888877653 24567899999999999999996544
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCC
Q 001307 585 RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 664 (1103)
Q Consensus 585 ~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~ 664 (1103)
. +.+++.+...... .+..+|..+..+++.++..+|.++ +++.++|.+......
T Consensus 439 ~---~~l~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~------------------- 491 (588)
T 1b3u_A 439 D---EKLNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD------------------- 491 (588)
T ss_dssp C---HHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-------------------
T ss_pred H---HHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-------------------
Confidence 3 4467777665442 234589999999999999998764 577888888765421
Q ss_pred CcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHH
Q 001307 665 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1103)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1103)
.+ ...|..++.+++.++..++..+ |.+.+++.+...+++. +++||..++.+++.+....
T Consensus 492 -~~-----------------~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 492 -PN-----------------YLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp -SC-----------------HHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGS
T ss_pred -CC-----------------HHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHh
Confidence 11 1236778889999999887653 6778888888888765 7899999999999987643
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001307 745 KLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNEC 795 (1103)
Q Consensus 745 ~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 795 (1103)
.+... ...++|.+.+ +.++++.+++..+..++..+
T Consensus 551 ------------~~~~~---~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 551 ------------DNSTL---QSEVKPILEK-LTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp ------------CHHHH---HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHT
T ss_pred ------------chhhh---HHHHHHHHHH-HcCCCchhHHHHHHHHHHHh
Confidence 12221 2455565554 56788999998888887643
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=9.1e-29 Score=298.37 Aligned_cols=553 Identities=16% Similarity=0.184 Sum_probs=418.4
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCcccc
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPR 95 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~ 95 (1103)
-+...+..++..+.++|..+|..|...|..+... .|+.....++..+.. +.++++|+.++..|.++....+
T Consensus 7 ~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~------ 80 (588)
T 1b3u_A 7 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVG------ 80 (588)
T ss_dssp TSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGT------
T ss_pred CCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC------
Confidence 3456789999999999999999999999876442 233222333333332 5678999999999986543310
Q ss_pred CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q 001307 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1103)
Q Consensus 96 l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 175 (1103)
.++....+...|...+.+ .+..+|..++.+++.++....+...|+.++|.+.++.+++++..|..+..+++.+....+
T Consensus 81 -~~~~~~~ll~~L~~l~~~-~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 81 -GPEYVHCLLPPLESLATV-EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp -SGGGGGGGHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred -cHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 112223344444444444 689999999999999988643333567789999999888889999999999999988776
Q ss_pred hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001307 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1103)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l 255 (1103)
+. ..+.+++.+...++|+ ++.||..|+++++.++..... . ...+.+++.+...++++++.+|..++.+|
T Consensus 159 ~~---~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l 227 (588)
T 1b3u_A 159 SA---VKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---D----NVKSEIIPMFSNLASDEQDSVRLLAVEAC 227 (588)
T ss_dssp HH---HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---H----HHHHTHHHHHHHHHTCSCHHHHTTHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH---H----hHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 54 4678889999999997 999999999999999987631 1 12344555566677788999999999999
Q ss_pred HHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC
Q 001307 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 335 (1103)
Q Consensus 256 ~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (1103)
..+++..+.. ...+.+++.+...+. +.+..+|..+++.+..++... .+ ..+...++|.+...+.+.
T Consensus 228 ~~l~~~~~~~--~~~~~~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~--~~------~~~~~~l~~~l~~~l~d~-- 293 (588)
T 1b3u_A 228 VNIAQLLPQE--DLEALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAV--GP------EITKTDLVPAFQNLMKDC-- 293 (588)
T ss_dssp HHHHHHSCHH--HHHHHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHH--CH------HHHHHTHHHHHHHHHTCS--
T ss_pred HHHHHhCCHH--HHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh--Cc------ccchhHHHHHHHHHhCCC--
Confidence 9998765542 223445666666654 456789999999999998731 11 124456777777776422
Q ss_pred CcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC----cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHH
Q 001307 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV 411 (1103)
Q Consensus 336 ~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 411 (1103)
+...+..+..++..++..+|+. ...+.++|.+...+++++|.+|.+++.+++.++..+++.
T Consensus 294 ---------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 294 ---------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp ---------------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred ---------------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 1235667888999999988754 457888899999999999999999999999998765542
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhc
Q 001307 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1103)
...+.++|.+...++|+++.||..++.+++.++..++.. .+.+.++|.+.+.+++ +++++|..++.++..++..
T Consensus 359 --~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 359 --NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH
Confidence 235678888888999999999999999999999877653 3567899999999988 8999999999999999998
Q ss_pred CCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHH
Q 001307 492 CTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1103)
Q Consensus 492 ~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~ 571 (1103)
++.+. +.+.+++.+...+.+++..+|+.++.+++.++...+..+ +.+.++|.+...+. +....+|..++.+
T Consensus 433 ~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~----~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 433 LGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSG----DPNYLHRMTTLFC 503 (588)
T ss_dssp HCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTT----CSCHHHHHHHHHH
T ss_pred cCHHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhh----CCCHHHHHHHHHH
Confidence 88653 456788999999999999999999999999999887653 56788888876532 2346789999999
Q ss_pred HHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHh
Q 001307 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1103)
Q Consensus 572 l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~ 642 (1103)
++.++..+|.+ .+.+.+++.+.+.... .+..+|..++.+++.++..+|.++.+ +.++|.+.+.
T Consensus 504 l~~l~~~~~~~---~~~~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l 566 (588)
T 1b3u_A 504 INVLSEVCGQD---ITTKHMLPTVLRMAGD---PVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKL 566 (588)
T ss_dssp HHHHHHHHHHH---HHHHHTHHHHHHGGGC---SCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHH
T ss_pred HHHHHHhcCHH---HHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHH
Confidence 99999998854 3667788888875542 23458999999999999988876432 5666766664
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=5.1e-25 Score=280.50 Aligned_cols=514 Identities=16% Similarity=0.191 Sum_probs=346.6
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc-cCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ-RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~-~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
+++.++|..+++| |++.|++|+++|+++++ +|+.+ ..+..++. .+.++.+|++|++.||+.+.++ |..+++
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~-~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~----W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPIC-VPCGLRLAEKTQVAIVRHFGLQILEHVVKFR----WNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTH-HHHHHHHTSTTSCHHHHHHHHHHHHHHHHHS----GGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHH-HHHHHHHHccCCCHHHHHHHHHHHHHHHHHh----cccCCH
Confidence 4688999999988 77889999999999998 67765 55566565 5778999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHhhc------chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 001307 99 HTQSSLKSMLLQSIQLE------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (1103)
+.+..||+.+++.+.++ .++.||++++.+++.|++.++| +.||++++.+.+.+++ ++..++.++.+|..+++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999864 4688999999999999999999 8999999999999877 55678999999999987
Q ss_pred hhhh--------------hchhhHHHHHHHHHHhhCC-------------------C-----------------------
Q 001307 173 YIGD--------------TLTPHLKHLHAVFLNCLTN-------------------S----------------------- 196 (1103)
Q Consensus 173 ~~~~--------------~l~~~~~~l~~~l~~~l~~-------------------~----------------------- 196 (1103)
.+.. .+...++.+++.+...+++ .
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 6321 1121222333333222211 0
Q ss_pred ----------------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH----HHHHHHHHHHHh--------CCCHHHH
Q 001307 197 ----------------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLL----PLMMRTLTESLN--------NGNEATA 248 (1103)
Q Consensus 197 ----------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~i----p~ll~~l~~~l~--------~~~~~~~ 248 (1103)
.++.+|.+|+.||..++..... ...+..++ +..++.+..... +.+.+.+
T Consensus 243 i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~---~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~ 319 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK---LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL 319 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSC---HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCC---hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence 0234566677777776653211 11111222 111222333321 1123455
Q ss_pred HHHHHHHHHHHccchHHH--------HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001307 249 QEALELLIELAGTEPRFL--------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1103)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1103)
...++.+..+++.....+ .+++..+++.++.+..+ .+..+...++++|..+.+... ......+.+++.
T Consensus 320 k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~--~~~~vs~~~l~fW~~ll~~~~--~~~~~~~~~~l~ 395 (1204)
T 3a6p_A 320 KRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH--PSQFLRSSTQMTWGALFRHEI--LSRDPLLLAIIP 395 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHSCTT--TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC--ccHHhHHHHHHHHHHHHhccc--ccccHHHHHHHH
Confidence 566666666664332221 23467888888888764 477889999999999987421 000112446788
Q ss_pred HHHHHH---HHhhcCCCCCc----ccccCCCCCccc--cC-CCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc---
Q 001307 321 RLFAIL---MSMLLDIEDDP----LWHSAETEDEDA--GE-SSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--- 387 (1103)
Q Consensus 321 ~l~~~l---~~~l~~~~~~~----~w~~~~~e~ed~--~~-~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--- 387 (1103)
++++.+ +..+.+++++. .|...|.+++++ +. ..-++.....++.++...+ ...++.+.+++.+.+.
T Consensus 396 ~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l 474 (1204)
T 3a6p_A 396 KYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFL 474 (1204)
T ss_dssp HHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhh
Confidence 888888 55555554332 354222221111 11 1223345566777776654 4556555565543332
Q ss_pred ----------------------CCChHHHHHHHHHHHHHHhhcHHHH-HH-----hHHHHHHHHHhcCCCCChhHHHHHH
Q 001307 388 ----------------------APEWQKHHAALIALAQIAEGCAKVM-VK-----NLEQVLSMVLNSFRDPHPRVRWAAI 439 (1103)
Q Consensus 388 ----------------------~~~~~~r~aal~~l~~l~~~~~~~~-~~-----~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1103)
++.|...++....+.++.+++.... .+ .++.+++.+.. +...+|.+|..++
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~~~i 553 (1204)
T 3a6p_A 475 DAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILSCVL 553 (1204)
T ss_dssp ----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHHHHH
T ss_pred cccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHHHHH
Confidence 2347888888899998888875422 12 23445554332 2446889999999
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----------CCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHH
Q 001307 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----------QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1103)
Q Consensus 440 ~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----------~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L 508 (1103)
.++|.++.++... ..+++.+++.++..+.+. .+.++|.+|+.++..+++.++.. +.||++.+...+
T Consensus 554 ~~l~~l~~~~~~~--p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-L~p~~~~i~~~~ 630 (1204)
T 3a6p_A 554 TNVSALFPFVTYR--PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-VLPNFDMLYNHV 630 (1204)
T ss_dssp HHHHHHGGGGGTC--GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-HGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcC--chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHH
Confidence 9999999988643 468888888888777551 12379999999999999999854 789999999999
Q ss_pred HHHhhcCC---hhHHHHHHHHHHHHHHhhh--hhhHhhHhhhhHHHHHHHhh
Q 001307 509 LVLLQNGK---QMVQEGALTALASVADSSQ--EHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 509 ~~~l~~~~---~~v~~~al~al~~l~~~~~--~~~~~~~~~i~~~l~~~l~~ 555 (1103)
..++.... ..-+.....+++.++...+ .....|+..+++.+.+.+..
T Consensus 631 ~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 631 KQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 88887544 5556667788888865432 23456788999888887753
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.88 E-value=2.6e-17 Score=209.56 Aligned_cols=786 Identities=12% Similarity=0.100 Sum_probs=443.4
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc-CCCHhHHHHHHHHHHHhhhhhhhhc----hhh-
Q 001307 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTL----TPH- 181 (1103)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~-s~~~~~r~~al~~l~~l~~~~~~~l----~~~- 181 (1103)
+++.+...+++..|+.+-+.+..+-+. | +.|+-+ ..++. +.+..+|..|+.+|...+...-..+ ...
T Consensus 29 ~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~~----~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 29 ALHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHFS----WQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHHH----HHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHHH----HHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH
Confidence 344433346888899888888776542 3 456543 33443 4577899999999998886532222 111
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-----CCHHHHHHHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-----GNEATAQEALELLI 256 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~-----~~~~~~~~~~~~l~ 256 (1103)
-+.+++.+... .+. +..||.....++..++... +..-||.++..+...+++ +++..+..++.+|.
T Consensus 102 r~~ll~~l~~~-~~~-~~~ir~kl~~~la~i~~~~--------~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 102 KAQLFTQITRF-ASG-SKIVLTRLCVALASLALSM--------MPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp HHHHHHHHHHT-TTS-CHHHHHHHHHHHHHHHHHH--------TTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCC-CHHHHHHHHHHHHHHHHHh--------CccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 22344444432 223 5889999999999988753 112244555555555544 25556667777777
Q ss_pred HHHccch-------------HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH
Q 001307 257 ELAGTEP-------------RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF 323 (1103)
Q Consensus 257 ~l~~~~~-------------~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (1103)
.+.+... ..+..+++.+++.+..++.+...+..++..+++++...+.
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-------------------- 231 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-------------------- 231 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT--------------------
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc--------------------
Confidence 6664210 0112233444444444433221111233333333322221
Q ss_pred HHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcch--HHHHHHHHHhhcCCChHHHHHHHHHH
Q 001307 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV--PVASEQLPAYLAAPEWQKHHAALIAL 401 (1103)
Q Consensus 324 ~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1103)
.+ .... +.+++.+.+.+ .+|..|.+|+.++
T Consensus 232 ---------------------------------------------~~-~~~~~~~~ll~~l~~~l--~~~~~~~~a~~~l 263 (963)
T 2x19_B 232 ---------------------------------------------LE-VPLQDCEALIQAAFAAL--QDSELFDSSVEAI 263 (963)
T ss_dssp ---------------------------------------------SS-CCGGGTHHHHHHHHHHT--TSTTTHHHHHHHH
T ss_pred ---------------------------------------------CC-CCcccchHHHHHHHHHh--CCchHHHHHHHHH
Confidence 11 0111 22333333333 1344555555555
Q ss_pred HHHHhhcH-HHHHHhHHHHHHHHHh-------cCCCCChhHHHHHHHHHHHhhhhhchhHH-----hhhhhhhHHHHHhh
Q 001307 402 AQIAEGCA-KVMVKNLEQVLSMVLN-------SFRDPHPRVRWAAINAIGQLSTDLGPDLQ-----NQFHPQVLPALAGA 468 (1103)
Q Consensus 402 ~~l~~~~~-~~~~~~l~~i~~~l~~-------~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-----~~~~~~il~~l~~~ 468 (1103)
..+..... ....+.+..+++.++. .+.+.+.......+..+..+++.....+. ..++..+++.++..
T Consensus 264 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~ 343 (963)
T 2x19_B 264 VNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFC 343 (963)
T ss_dssp HHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHH
Confidence 55544211 0011122222222111 12223334445555666666654333231 24556777777776
Q ss_pred ccC----CCCcchHHHHHHHHHHHHhcCC----------cccccCchHHHHHHHHHHhhcCCh---------------hH
Q 001307 469 MDD----FQNPRVQAHAASAVLNFSENCT----------PEILTPYLDGIVSKLLVLLQNGKQ---------------MV 519 (1103)
Q Consensus 469 l~~----~~~~~v~~~a~~al~~l~~~~~----------~~~l~~~l~~ll~~L~~~l~~~~~---------------~v 519 (1103)
..+ ..+..+...++..+..+++... ...+.+++..+++.++..+..+.. ..
T Consensus 344 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~ 423 (963)
T 2x19_B 344 TGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIY 423 (963)
T ss_dssp HTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHH
Confidence 553 1245667777777777776321 123456777777777776643211 22
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHh
Q 001307 520 QEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1103)
Q Consensus 520 ~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1103)
|..+..++..++...+. ..++.+++.+...+.+..+...+..|..++-+++.++..+. +...++++.+++.+..+.
T Consensus 424 r~~~~~~L~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~-~~~~~~l~~l~~~l~~l~ 499 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGA---ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETID-VNYSDVVPGLIGLIPRIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCC-SSCCSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcC-chhhHHHHHHHHHHHhCC
Confidence 44555556555554443 24455666666666443233456778889999999998776 345677888888654432
Q ss_pred cCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceee
Q 001307 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIG 679 (1103)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 679 (1103)
. ++..++..++.++++++..++.+. +|++.+++.+++.+.. +.
T Consensus 500 ~----~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~~-~~------------------------------- 542 (963)
T 2x19_B 500 I----SNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLHALGN-PE------------------------------- 542 (963)
T ss_dssp C----CSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHHHTTC-GG-------------------------------
T ss_pred C----CcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHhCC-ch-------------------------------
Confidence 2 122378888889999988876543 7999999999988832 10
Q ss_pred eechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccc-cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCH
Q 001307 680 IKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF-YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNE 758 (1103)
Q Consensus 680 v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~ 758 (1103)
.+..|+.++..++..++..+.||++.++..+...+.. ....+.|..+.++++.++... .+
T Consensus 543 -------V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~------------~~ 603 (963)
T 2x19_B 543 -------LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL------------QV 603 (963)
T ss_dssp -------GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS------------CH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC------------CH
Confidence 1456889999999999999999999999988877764 236788998899988887542 12
Q ss_pred HHHHHHHHHHHHHHHHHHc----cCCcHH---HHHHHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHH
Q 001307 759 SYVKQLSDFIIPALVEALH----KEPDTE---ICASMLDSLNECIQISGPLLD-----------------EGQVRSIVDE 814 (1103)
Q Consensus 759 ~~~~~~~~~i~~~l~~~~~----~~~~~~---~~~~~~~~l~~~~~~~g~~~~-----------------~~~~~~~~~~ 814 (1103)
+...+++..+++.+...+. ...+.+ .+...++++..+++.++.... .+.+..+++.
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH
Confidence 3344556666655554442 222333 334667778788888765221 1113334444
Q ss_pred HHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCC
Q 001307 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1103)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 894 (1103)
+...+....... . .+..+.+.++.+++.++...|+.+.|+++++++.+.......+
T Consensus 684 ~~~~~~~~l~~~--------~----------------~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 739 (963)
T 2x19_B 684 VFQLIQKVLSKW--------L----------------NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP 739 (963)
T ss_dssp HHHHHHHHHHHH--------T----------------TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhc--------c----------------CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC
Confidence 444443322110 0 0124677899999999999999999999998887766443222
Q ss_pred CHHHHHHHHHHHHHHHhhhhh--hhhhhHHhHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhh
Q 001307 895 TAEERRIAICIFDDVAEQCRE--AALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPEN 972 (1103)
Q Consensus 895 ~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~ 972 (1103)
. ...+.+++.++...|. ...+++. +++..+++.+..++.+. -.++
T Consensus 740 ~----~~~l~l~~~li~~f~~~~~~~~~~~--------------------------~~l~~~~~~~l~~~~~~---~~~~ 786 (963)
T 2x19_B 740 Q----ASALDLTRQLVHIFAHEPAHFPPIE--------------------------ALFLLVTSVTLTLFQQG---PRDH 786 (963)
T ss_dssp C----HHHHHHHHHHHHHHTTCTTTCHHHH--------------------------HHHHHHHHHHHHHHHHC---TTTC
T ss_pred c----cHHHHHHHHHHHHhCCCcchHHHHH--------------------------HHHHHHHHHHHHHHhhC---cccC
Confidence 1 2344555555552221 1111111 12222333333333311 0125
Q ss_pred hhHHHHHHHHHHHHHhhcCCCC-----CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcC--CcccCcCcCchhHH
Q 001307 973 LMAYDNAVSALGKICQFHRDSI-----DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSD--SDLLGPNHQYLPKI 1045 (1103)
Q Consensus 973 ~~~~~na~~al~~l~~~~~~~~-----~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~i 1045 (1103)
..+++.....+++++.+++..+ .+..+++.++..+.. .|..-.+.++..+..++.... +.+...-..+.+.+
T Consensus 787 pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l 865 (963)
T 2x19_B 787 PDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRML 865 (963)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHH
T ss_pred chHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 7899999999999999887654 267788888888863 666777889999999886532 11111111356677
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHh-----------cCCHHHHHHHH
Q 001307 1046 VSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWS-----------SLQPQQQLALQ 1099 (1103)
Q Consensus 1046 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----------~l~~~~~~~l~ 1099 (1103)
+..+...+.... +......+..++..+...+|.. +.+++. +++++++..+.
T Consensus 866 ~~~l~~~l~~~~--~~~~~~~~~~il~~l~~~~~~~-~~~~l~~~l~~~~~p~~~~~~~~~~~f~ 927 (963)
T 2x19_B 866 LIAVLEAIGGQA--SRSLMDCFADILFALNKHCFSL-LSMWIKEALQPPGFPSARLSPEQKDTFS 927 (963)
T ss_dssp HHHHHHHHTTTS--CGGGHHHHHHHHHHHHHHSHHH-HHHHHHHHTCSTTSSCTTCCHHHHHHHH
T ss_pred HHHHHHHhcccC--ChhHHHHHHHHHHHHHHHChHH-HHHHHHHHhcccCCCCCcCCHHHHHHHH
Confidence 766666664221 2334455666666777667654 554442 35667776653
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.87 E-value=2.7e-17 Score=207.82 Aligned_cols=695 Identities=11% Similarity=0.108 Sum_probs=424.4
Q ss_pred hHHHHHHHHHhcC--CChHHHHHHHHHHHHhhhc----------CchH----HHHHHHHHHccCCChhHHHHHHHHHHHh
Q 001307 21 SAPFETLISHLMS--TSNEQRSEAELLFNLCKQQ----------DPDS----LTLKLAHLLQRSPHPEARAMAAVLLRKL 84 (1103)
Q Consensus 21 ~~~l~~ll~~~~s--~d~~~r~~Ae~~L~~~~~~----------~p~~----~~~~L~~il~~~~~~~~R~~a~~~L~~~ 84 (1103)
++-+..++.-+.+ .+.++|..|--.|+...+. -|+. +-..+++.+.+. +..+|...+..+...
T Consensus 34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSI 112 (960)
T ss_dssp TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 3333344444434 3567899999988864331 1211 234455555544 488999999999888
Q ss_pred cccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC--C--CCcch-------hHHHHH----
Q 001307 85 LTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--E--NGWPE-------LLPFMF---- 149 (1103)
Q Consensus 85 i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~--~--~~w~~-------ll~~l~---- 149 (1103)
+.....+.|.. +...|++.+.+ .+...+..+..++..+.+..-. . ..+++ ..+.+.
T Consensus 113 a~~d~p~~Wp~--------ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~ 183 (960)
T 1wa5_C 113 ADSDFPDRWPT--------LLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK 183 (960)
T ss_dssp HHHHSTTTCTT--------HHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCccchhH--------HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654455853 33455666665 4666777777788877764211 0 01221 122122
Q ss_pred ---HhhcCCCH---hHH------HHHHHHHHHhhh-hhhhhchhhHHHHHHHHHHhhCCC-----CC---------hHHH
Q 001307 150 ---QCVSSDSV---KLQ------ESAFLIFAQLSQ-YIGDTLTPHLKHLHAVFLNCLTNS-----NN---------PDVK 202 (1103)
Q Consensus 150 ---~~~~s~~~---~~r------~~al~~l~~l~~-~~~~~l~~~~~~l~~~l~~~l~~~-----~~---------~~vr 202 (1103)
+.++++.. ..| ..++.+++.+.. ..++.+..++..+++.+.+.+... .+ ..+|
T Consensus 184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk 263 (960)
T 1wa5_C 184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVK 263 (960)
T ss_dssp HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHH
Confidence 22443321 123 223444443321 223334456677777777766431 00 3578
Q ss_pred HHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHccch--HHHH--HhHHHH
Q 001307 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN-----NGNEATAQEALELLIELAGTEP--RFLR--RQLVDV 273 (1103)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~-----~~~~~~~~~~~~~l~~l~~~~~--~~~~--~~~~~l 273 (1103)
..+++++..++.... +.|...++.+++.+...+. ..++.++..+++.|..+++... ..+. +++..+
T Consensus 264 ~~~~~~l~~l~~~~~-----~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 264 SSIQELVQLYTTRYE-----DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHH
Confidence 889999998887652 3455566666666666554 3456788999999999886432 2233 677777
Q ss_pred H-HHHHHhhcCC---------------------CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001307 274 V-GSMLQIAEAE---------------------SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1103)
Q Consensus 274 ~-~~l~~~~~~~---------------------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1103)
+ ..++..+.-. +.....|..|..++..++.. .+ ...++.+++.+...+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~---~~------~~v~~~~l~~i~~~l~ 409 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK---NE------VLVTNIFLAHMKGFVD 409 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH---CH------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH---cc------hhHHHHHHHHHHHHHH
Confidence 7 4555543210 11124688899999998884 11 1244455555544443
Q ss_pred CCC--CCcccccCCCCCccccCCCchhhHHHHHHHHHHHc-----CCC------cchHHHHHHHHHhhcCC---ChHHHH
Q 001307 332 DIE--DDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-----GGN------TIVPVASEQLPAYLAAP---EWQKHH 395 (1103)
Q Consensus 332 ~~~--~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~~~---~~~~r~ 395 (1103)
... ..+ +|..+.+|..+++.++... |.. .+.+.+...+...++++ ++..|.
T Consensus 410 ~~~~~~~~-------------~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~ 476 (960)
T 1wa5_C 410 QYMSDPSK-------------NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV 476 (960)
T ss_dssp HHHC-----------------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred HhccCcch-------------hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence 211 011 2334457778888887532 111 33344444444455666 889999
Q ss_pred HHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhh-----------chhHHhhhhhhhHHH
Q 001307 396 AALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL-----------GPDLQNQFHPQVLPA 464 (1103)
Q Consensus 396 aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~-----------~~~~~~~~~~~il~~ 464 (1103)
.++.++|.+++... ..++..+++.++.++.|+++.||.+|++++.++++.. ...+ .+|++.+++.
T Consensus 477 ~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l-~p~l~~ll~~ 552 (960)
T 1wa5_C 477 DAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKN 552 (960)
T ss_dssp HHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT-TTTHHHHHHH
T ss_pred HHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHh-hhhHHHHHHH
Confidence 99999999988753 2578899999999999999999999999999998742 2334 6899999999
Q ss_pred HHhhccCCCC---c--chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhc-----CChhHHHHHHHHHHHHHHhh
Q 001307 465 LAGAMDDFQN---P--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN-----GKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 465 l~~~l~~~~~---~--~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~-----~~~~v~~~al~al~~l~~~~ 534 (1103)
++..++. .. + .....+..++..+++.++.+ +.||++.+++.|...+.. .++..+..++.+++.++...
T Consensus 553 L~~ll~~-~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~ 630 (960)
T 1wa5_C 553 LIALILK-HGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT 630 (960)
T ss_dssp HHHHHHT-TCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHh-ccCCCCcccccHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 9998887 31 1 13467889999999888755 679999999998887753 25677788999999999874
Q ss_pred h-hhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHH--HHhcCCCCCCCchhh
Q 001307 535 Q-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM--SLQGSQMETDDPTTS 611 (1103)
Q Consensus 535 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~--~l~~~~~~~~~~~~~ 611 (1103)
+ +.+.+|.+.++|.+...+++.. ..+...+++.++.+.... +.|.|+..++++.+. ..+.. .. ...
T Consensus 631 ~~~~~~~~~~~~~p~~~~iL~~~~----~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~----~~-~~~ 699 (960)
T 1wa5_C 631 QRQNLPLLVDSMMPTFLTVFSEDI----QEFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWEL----KG-NIP 699 (960)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHTTC----TTTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCC----TT-THH
T ss_pred CcchHHHHHHHHHHHHHHHHHhhh----HhhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcC----CC-Cch
Confidence 4 4677899999999999987532 235666788888777655 457777777777766 43321 11 334
Q ss_pred HHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHH
Q 001307 612 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATA 691 (1103)
Q Consensus 612 ~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A 691 (1103)
.+..++..+....++.|.. +..++..+.+.+..+ + .+..|
T Consensus 700 ~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-----------------------------------~----~~~~a 739 (960)
T 1wa5_C 700 AVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK-----------------------------------A----YEVHG 739 (960)
T ss_dssp HHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT-----------------------------------T----THHHH
T ss_pred hHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC-----------------------------------c----ccchH
Confidence 5555666665555555544 233333322222110 0 02568
Q ss_pred HHHHHHHHHHhhhh-ccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHH------
Q 001307 692 CNMLCCYADELKEG-FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL------ 764 (1103)
Q Consensus 692 ~~~l~~l~~~~~~~-~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~------ 764 (1103)
+.+++.++.++++. |.||++.+++.+.+.+.....+.+++.....+..++... +++.+-+.
T Consensus 740 ~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~i~~ 807 (960)
T 1wa5_C 740 FDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKL------------GSDFLIHFIDEVQD 807 (960)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH------------CHHHHHHHHHTTST
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHc------------CHHHHHHHHHhcch
Confidence 89999999999988 999999999999988876545667765555444443221 12111111
Q ss_pred ---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q 001307 765 ---SDFIIPALVEALHKEPDTEICASMLDSLNECIQIS--GPLLDEGQVRSIVDEIKQVITA 821 (1103)
Q Consensus 765 ---~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l~~~l~~ 821 (1103)
...+...++..+..-....-+.-++.++..++... .+....+....+++.+..++..
T Consensus 808 ~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 808 GLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp THHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 11122233444444333344445556666665543 1111123466777777776654
No 22
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.87 E-value=6.9e-18 Score=214.56 Aligned_cols=805 Identities=8% Similarity=0.044 Sum_probs=449.9
Q ss_pred hcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHH
Q 001307 152 VSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPL 231 (1103)
Q Consensus 152 ~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ 231 (1103)
+.+++...|..|-..|..+-+. + ...+.+...+..+.+..+|..|...|.+.+...-.....+....+-..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~-p--------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEAS-P--------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTS-T--------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcC-H--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 3345666666666666554332 1 112233334433348899999999999988752111111111222335
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCC---C-cchHHHHHHHHHHHHHHHh-hh
Q 001307 232 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE---S-LEEGTRHLAIEFVITLAEA-RE 306 (1103)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~---~-~~~~~r~~a~~~l~~l~~~-~~ 306 (1103)
+++.+.... ++...++...+.++..++..........+..++.. +... . .+...+..++.+|..+++. ..
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~----~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~ 161 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINT----FQNQRMPNVSADVQLWIMLEVLTAIPEEAQV 161 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTCC------HHHHH----HHHTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHH----HhccccccCCCHHHHHHHHHHHHHhHHHHhc
Confidence 666666543 23577889999999999876432222333444433 3211 0 1356788899999998863 11
Q ss_pred ccchh-----hhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHH--HcCCCcchHHHH
Q 001307 307 RAPGM-----MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI--ALGGNTIVPVAS 379 (1103)
Q Consensus 307 ~~~~~-----~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~--~~~~~~~~~~l~ 379 (1103)
..+.. ...+...++.+++.+...+...... ..+++.+.....+.+|+..... ..+.. ....++
T Consensus 162 ~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~---------~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll 231 (971)
T 2x1g_F 162 IHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNR---------VWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTIT 231 (971)
T ss_dssp CCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTS---------CCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------CCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHH
Confidence 11100 0112223455555555554322110 0000011234556677776665 34422 455566
Q ss_pred HHHHHhh----------------cCCChHHHHHHHHHHHHHHhhcH-----HHHHHhHHHHHH---HHHhcCCCCC---h
Q 001307 380 EQLPAYL----------------AAPEWQKHHAALIALAQIAEGCA-----KVMVKNLEQVLS---MVLNSFRDPH---P 432 (1103)
Q Consensus 380 ~~l~~~l----------------~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~~i~~---~l~~~l~d~~---~ 432 (1103)
+.+.. + .+++...|.+|+.++..+.+... ..+...++.++. .+...+.+.+ .
T Consensus 232 ~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~ 310 (971)
T 2x1g_F 232 AVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNE 310 (971)
T ss_dssp HHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCS
T ss_pred HHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccch
Confidence 66554 3 01357889999999999987422 222233333332 2222334444 2
Q ss_pred hHHHHHHHHHHHhhhhhchhHH----------hhhhhhhHHHHHhhccC----CCCcchHHHHHHHHHHHHhcC------
Q 001307 433 RVRWAAINAIGQLSTDLGPDLQ----------NQFHPQVLPALAGAMDD----FQNPRVQAHAASAVLNFSENC------ 492 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~----------~~~~~~il~~l~~~l~~----~~~~~v~~~a~~al~~l~~~~------ 492 (1103)
......+..+..+++.....+. ..++..+++.++..... ..+..+...++.++..+++..
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~ 390 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSND 390 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccc
Confidence 5666667777777754332221 24566778888776532 135788999999988887622
Q ss_pred -C----cccccCchHHHHHHHHHHhhcCC---------------hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHH
Q 001307 493 -T----PEILTPYLDGIVSKLLVLLQNGK---------------QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1103)
Q Consensus 493 -~----~~~l~~~l~~ll~~L~~~l~~~~---------------~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1103)
. ...+.|++..+++.++..+.-++ ...|..+..++..++...++ ..++.+++.+...
T Consensus 391 ~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~~~~~l~~~ 467 (971)
T 2x1g_F 391 EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND---YILEILAAMLDEA 467 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT---HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Confidence 1 12245777888888777663221 13566677777777766553 3455566666665
Q ss_pred Hhhc-CCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccc
Q 001307 553 LVNA-TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPY 631 (1103)
Q Consensus 553 l~~~-~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ 631 (1103)
+... .++..+.-|..++-+++.++..+. +...++++.+++.+..+... +.+..++..++.++++++..++... .|
T Consensus 468 l~~~~~~~~~w~~~eaal~~l~~iae~~~-~~~~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~-~~ 543 (971)
T 2x1g_F 468 IADLQRHPTHWTKLEACIYSFQSVAEHFG-GEEKRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENP-AY 543 (971)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC-----C
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCH-HH
Confidence 5432 112456678889999999988776 33467888888855554321 1223378888999999999888665 79
Q ss_pred hhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHH
Q 001307 632 MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID 711 (1103)
Q Consensus 632 l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~ 711 (1103)
++.+++.+++.+. +.+ +..|+.++..+++.++..+.||++
T Consensus 544 l~~vl~~l~~~l~--~~v--------------------------------------~~~A~~al~~l~~~~~~~l~p~~~ 583 (971)
T 2x1g_F 544 IPPAINLLVRGLN--SSM--------------------------------------SAQATLGLKELCRDCQLQLKPYAD 583 (971)
T ss_dssp HHHHHHHHHHHHH--SSC--------------------------------------HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hHH--------------------------------------HHHHHHHHHHHHHHHHHhccccHH
Confidence 9999999998872 211 356888999999999999999999
Q ss_pred HHHHHhccccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCC-cH---HHHH
Q 001307 712 QVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP-DT---EICA 786 (1103)
Q Consensus 712 ~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~---~~~~ 786 (1103)
.++..+...+... ...+.+..+..+++.++.... .....+++..++..++..+...+.... +. .-..
T Consensus 584 ~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--------~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 584 PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--------PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--------TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 9999988877642 357889999999888876420 000123344444444444444333322 22 3334
Q ss_pred HHHHHHHHHHHHhCCCCC------------HHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHH
Q 001307 787 SMLDSLNECIQISGPLLD------------EGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEE 854 (1103)
Q Consensus 787 ~~~~~l~~~~~~~g~~~~------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~ 854 (1103)
..+..+..++..+++... ..+.+.+++.+..++... . .+.
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-------------~---------------~~~ 707 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW-------------V---------------EEI 707 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT-------------T---------------TCH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc-------------c---------------ccH
Confidence 556666777776665321 222333344333333210 0 112
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhh--hhhhHHhHHHHHHHHH
Q 001307 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA--ALKYYETYLPFLLEAA 932 (1103)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~~a 932 (1103)
.+.+.++.+++.++..+|+.+.||++.+++.+...+..... ..++.+++.++..+|.. ..+.+..+
T Consensus 708 ~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----~~~l~l~~~~i~~~~~~~~~~~~l~~~-------- 775 (971)
T 2x1g_F 708 DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----APTLEISKTAIVMFFKDEGCKPLMQQL-------- 775 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC----HHHHHHHHHHHTTCCC-----HHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCCcchHHHHHHH--------
Confidence 47888999999999999999999999999999887654322 45788888888877652 11222222
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCC-CCChhhhhHHHHHHHHHHHHHhhcCCCC-----CHhhHHHHHHhc
Q 001307 933 VYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN-ALQPENLMAYDNAVSALGKICQFHRDSI-----DAAQVVPAWLNC 1006 (1103)
Q Consensus 933 ~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~~~~~~~~~~na~~al~~l~~~~~~~~-----~~~~~l~~~l~~ 1006 (1103)
+..+.....+++.... ...+++.++++....-+++++.++|..+ +++.+++..+..
T Consensus 776 ------------------~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~ 837 (971)
T 2x1g_F 776 ------------------LREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRG 837 (971)
T ss_dssp ------------------HHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHH
Confidence 2222222333333210 0112356788899999999999988754 256777777777
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhcC-Cc-ccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHH
Q 001307 1007 LPIKGDLIEAKIVHEQLCSMVERSD-SD-LLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLA 1084 (1103)
Q Consensus 1007 lp~~~D~~e~~~~~~~l~~l~~~~~-~~-~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 1084 (1103)
|.. .+..-.+.++.++..++...+ .. +...-.++.+.++..+...+.+. .+......+..++..+...+|.. +.
T Consensus 838 l~~-~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~~~s~~~~~a~~l~~l~~~~~~~-~~ 913 (971)
T 2x1g_F 838 MTL-PESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYL--TPRSQVDKFADILLAMNRKYAAE-MA 913 (971)
T ss_dssp HTS-SCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTT--SCGGGGGGGHHHHHHHHHHHHHH-HH
T ss_pred cCC-CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhccc--CChhHHHHHHHHHHHHHHHCcHH-HH
Confidence 764 444556678888888776542 11 10000012233333333323211 12334445556666666666643 44
Q ss_pred HHHh-----------cCCHHHHHHH
Q 001307 1085 STWS-----------SLQPQQQLAL 1098 (1103)
Q Consensus 1085 ~~~~-----------~l~~~~~~~l 1098 (1103)
+++. .++++++..+
T Consensus 914 ~~l~~~l~~~~~p~~~~~~~~~~~f 938 (971)
T 2x1g_F 914 VWMKSLMSTPNFPTQLITDADKTRY 938 (971)
T ss_dssp HHHHHHHTSSSCSCSSSCHHHHHHH
T ss_pred HHHHHHhcccCCCCCcCCHHHHHHH
Confidence 4432 2467777665
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.80 E-value=2.3e-17 Score=191.81 Aligned_cols=406 Identities=12% Similarity=0.077 Sum_probs=295.1
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC--CHhHHHHHHHHHHHhhhhh----------
Q 001307 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYI---------- 174 (1103)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~~~---------- 174 (1103)
.+++.+.+ ++..+|+.+.+.+..+... .-|++++.+.+.+.++ +...|..|..+|+.+.+..
T Consensus 5 ~~L~~~~s-~d~~~r~~Ae~~L~~~~~~-----~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVS-PDRLELEAAQKFLERAAVE-----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTC-SCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhh-----ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 34555555 6889999998888876542 1355666666666654 5789999999999887431
Q ss_pred -hhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC--CHHHHHH
Q 001307 175 -GDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQE 250 (1103)
Q Consensus 175 -~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~--~~~~~~~ 250 (1103)
...+.+ ....+...+...+.++ +..+ ..+..+++.++..... ...+|.+++.+...++++ ++.++..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~-------~~~w~~ll~~L~~~l~~~~~~~~~r~~ 149 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIP-------VNQWPELIPQLVANVTNPNSTEHMKES 149 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGG-------GTCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhcc-------ccccHHHHHHHHHHhccCCCCHHHHHH
Confidence 011211 3455667778888887 6777 7888889888875311 012455666666667777 8899999
Q ss_pred HHHHHHHHHccc-hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001307 251 ALELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1103)
Q Consensus 251 ~~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1103)
++.+|..+++.. +..+.+++..+++.+...+.+.+.+..+|..|+..+..++.. ....... ..+...+++.+...
T Consensus 150 al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~---~~~~~~~-~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF---TKANFDK-ESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT---THHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhh-hHHHHHHHHHHHHh
Confidence 999999999865 666778888899999988865422688999999998887652 1100000 01112234444433
Q ss_pred hcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--CcchH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q 001307 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVP-VASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1103)
Q Consensus 330 l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1103)
+... +...+..+.+++..++...+. ...++ .+++.+...+++.+...|..++..++.+++
T Consensus 226 ~~~~-----------------~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 226 TQCP-----------------DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp TTCS-----------------SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred cCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 2111 122455678888888877652 13345 677777777788889999999999988876
Q ss_pred hc---------------------HHHHHHhHHHHHHHHHhcCCC-------CChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001307 407 GC---------------------AKVMVKNLEQVLSMVLNSFRD-------PHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1103)
Q Consensus 407 ~~---------------------~~~~~~~l~~i~~~l~~~l~d-------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (1103)
.. ...+.++++.++|.++..+.+ .++.+|.+|+.+|+.++..++. ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~ 364 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV 364 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHH
Confidence 52 113445678889988887743 4578999999999999998873 456
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~ 538 (1103)
+.++|.+...+++ +++++|..|+.+++.+++++.++.+.++++.+++.+...+.++++.+|..|+.+++.++...+..+
T Consensus 365 ~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 365 PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (462)
T ss_dssp HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccc
Confidence 7899999999998 899999999999999999887566788999999999999999999999999999999999888765
Q ss_pred --HhhHhhhhHHHHHHH
Q 001307 539 --QKYYDAVMPFLKAIL 553 (1103)
Q Consensus 539 --~~~~~~i~~~l~~~l 553 (1103)
.+|++.+++.|...+
T Consensus 444 ~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 444 INDVYLAPLLQCLIEGL 460 (462)
T ss_dssp CSTTTHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 478898888887654
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1e-18 Score=180.34 Aligned_cols=213 Identities=14% Similarity=0.282 Sum_probs=185.6
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHH-HHhhcHHHH--HHhHHHHHHHHHhcC-CCCChhHHHHHHHHHHHhhhh
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQ-IAEGCAKVM--VKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTD 448 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~-l~~~~~~~~--~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~ 448 (1103)
.+++.+-+-+.+.+++.+|+.|.+|+..|+. +.+++++.. ...+..++..+.+.+ +|+|+.||..|+.+++.+++.
T Consensus 12 ~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~ 91 (249)
T 2qk1_A 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK 91 (249)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 4444444456677889999999999999999 988776544 345568899999999 799999999999999999999
Q ss_pred hc-hhHHh-hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHH
Q 001307 449 LG-PDLQN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTA 526 (1103)
Q Consensus 449 ~~-~~~~~-~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~a 526 (1103)
++ +.+ . +|+..++|.++..+.+ +.+.|+.++..++..+++.+++....+|++.+++.|+..+++.++.+|+.++.+
T Consensus 92 l~~~~f-~~~y~~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 92 LKTPGF-SKDYVSLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HCTTTS-CHHHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred cccccc-cHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 98 888 6 8999999999999999 889999999999999999987654334599999999999999999999999999
Q ss_pred HHHHHHhhh---hhhHhhH-hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001307 527 LASVADSSQ---EHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1103)
Q Consensus 527 l~~l~~~~~---~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i 591 (1103)
|+.++...+ ..|.+|+ +.++|.+...+.. ....+|..|++|++.+...+|.+.|.||++.+
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999887 5688999 9999999999843 45679999999999999999987899998765
No 25
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.78 E-value=7.7e-13 Score=168.55 Aligned_cols=243 Identities=13% Similarity=0.136 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC--CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA 468 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~ 468 (1103)
|..|.++-.+|..++...+.. .++.+.+.+...+. ..+++.++++++++|.+++.+.......+++.+++.+...
T Consensus 427 ~~~~~~~~~~L~~l~~~~~~~---~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l 503 (1049)
T 3m1i_C 427 IQLYKSEREVLVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence 455666667777776555543 23334444444443 4689999999999999998776554345678888888764
Q ss_pred cc-----CCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH----
Q 001307 469 MD-----DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ---- 539 (1103)
Q Consensus 469 l~-----~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~---- 539 (1103)
.. + +++.++..++++++.+.+.+... ..|++.+++.++..+.++++.|+..|..++..++..++..+.
T Consensus 504 ~~~~~~~~-~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~ 580 (1049)
T 3m1i_C 504 TVKKRGKD-NKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQP 580 (1049)
T ss_dssp TTSSCSHH-HHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCT
T ss_pred Hhhhcccc-chHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 32 2 45667778999999998776543 368999999999999988999999999999999999888876
Q ss_pred ----hhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhC-hhhhhhhHHHHHHHHHHHhcC-------CCC-CC
Q 001307 540 ----KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG-KDKFRDDAKQVMEVLMSLQGS-------QME-TD 606 (1103)
Q Consensus 540 ----~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~-~~~~~~~~~~i~~~l~~l~~~-------~~~-~~ 606 (1103)
||++.++..+..++.....+ -+...++|++.++.+.| .+...+++..+++.+...++. ..+ .+
T Consensus 581 ~~~~p~~~~il~~l~~~~~~~~~~----~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1049)
T 3m1i_C 581 RESEPFIQTIIRDIQKTTADLQPQ----QVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLL 656 (1049)
T ss_dssp TCSSCHHHHHHHTHHHHHTTSCHH----HHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred CCCCcHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc
Confidence 99999999999887653221 13567899999999888 467889988888766532110 000 01
Q ss_pred Cc--hh--hHHHHHHHHHHhHhcCCcccchhhhhHHHHHhc
Q 001307 607 DP--TT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 607 ~~--~~--~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~ 643 (1103)
++ .+ ..++.++..++..+|..|.|+++.+++.++...
T Consensus 657 d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~ 697 (1049)
T 3m1i_C 657 DSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 11 12 355778899999999999999998888776443
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.78 E-value=7.8e-17 Score=186.57 Aligned_cols=369 Identities=16% Similarity=0.135 Sum_probs=255.0
Q ss_pred CCcchh---HHHHHHhhcCCCHhHHHHHHHHHHHhhhh-hhhhchhhHH--HHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001307 139 NGWPEL---LPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLK--HLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1103)
Q Consensus 139 ~~w~~l---l~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~~~l~~~~~--~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1103)
..|++. ++.+.+.++++++..|..|+..++.+... ..+.....+. .+++.+...+.++.++.+|..|+.++..+
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 589888 99999999999999999999999988642 2222222222 57888888888854789999999999998
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhcCCCcchHHH
Q 001307 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTR 291 (1103)
Q Consensus 213 ~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r 291 (1103)
..... .....+. -...++.+...+.++++.++..++.+|..++...+..-...+ ..+++.++.++.. +.+..+|
T Consensus 93 ~~~~~--~~~~~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~ 167 (450)
T 2jdq_A 93 ASGNS--LQTRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMT 167 (450)
T ss_dssp HSSCH--HHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHH
T ss_pred hcCCH--HHHHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHH
Confidence 86321 0111111 123555666677788999999999999999986644322222 2467777777753 3468999
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001307 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1103)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1103)
..++..+..++... .|.. ....+..++|.++..+...+ ......+..++..++...+.
T Consensus 168 ~~a~~~L~~l~~~~--~~~~---~~~~~~~~l~~L~~~l~~~~-----------------~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 168 RNAVWALSNLCRGK--SPPP---EFAKVSPCLNVLSWLLFVSD-----------------TDVLADACWALSYLSDGPND 225 (450)
T ss_dssp HHHHHHHHHHHCCS--SSCC---CGGGTGGGHHHHHHHTTCCC-----------------HHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHhCCC--CCCC---CHHHHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHHHHCCCcH
Confidence 99999999999731 1211 11233567777777664221 12334455666666532110
Q ss_pred --Ccc-hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhh
Q 001307 372 --NTI-VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1103)
Q Consensus 372 --~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~ 447 (1103)
..+ ...+++.+...+.+++|..|..++.+|+.++.+........+. .+++.+...+.++++.+|..|+++|+.++.
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 000 1124566667778899999999999999999887654333332 588999999999999999999999999997
Q ss_pred hhchhHHhhhh-hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHH
Q 001307 448 DLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALT 525 (1103)
Q Consensus 448 ~~~~~~~~~~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~v~~~al~ 525 (1103)
...... .... ..++|.++..+.+ +++.+|..|+++|.+++....++.....+ ..+++.|+.++++.++.++..++.
T Consensus 306 ~~~~~~-~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 383 (450)
T 2jdq_A 306 GNRAQI-QTVIDANIFPALISILQT-AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383 (450)
T ss_dssp SCHHHH-HHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHH
T ss_pred CCHHHH-HHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 544333 2222 4789999999998 88999999999999999875443332222 347889999999999999999999
Q ss_pred HHHHHHHhhhh
Q 001307 526 ALASVADSSQE 536 (1103)
Q Consensus 526 al~~l~~~~~~ 536 (1103)
+++.++...+.
T Consensus 384 aL~~l~~~~~~ 394 (450)
T 2jdq_A 384 GLENILRLGEQ 394 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhchh
Confidence 99999976543
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=1.2e-16 Score=185.12 Aligned_cols=401 Identities=13% Similarity=0.138 Sum_probs=281.1
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHH-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccc
Q 001307 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS-SLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1103)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~-~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~ 136 (1103)
++.|++.+. +.++.+|..|+..|++++.... ...+..-... .+...|++.|.++.++.+|..++.+++.++....
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~---~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEP---NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSS---SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC---CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 466777774 6688999999999999876431 1111111222 5677888888875588999999999999987321
Q ss_pred CC-C--CcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhH--HHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 001307 137 PE-N--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1103)
Q Consensus 137 ~~-~--~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1103)
.. . .....+|.+.++++++++.+|+.|+.+|+.++...++. ...+ ..+++.+...+.++.+..+|..|+.+++.
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 10 0 12568999999999999999999999999998764332 1111 24677888888853389999999999999
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhcCCCcchHH
Q 001307 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGT 290 (1103)
Q Consensus 212 l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~ 290 (1103)
+............+...+|.+ ...+.++++.++..++.+|..++...+....... ..+++.++..+. +.+..+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L----~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v 250 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKV 250 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHH----HHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHH----HHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhH
Confidence 986431111122224445544 4455678899999999999999986544333222 245666777664 346788
Q ss_pred HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC
Q 001307 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1103)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1103)
|..|+..+..++.. .+. .... +. .
T Consensus 251 ~~~a~~~L~~l~~~---~~~-------~~~~-------------------------------------------~~---~ 274 (450)
T 2jdq_A 251 VSPALRAVGNIVTG---DDI-------QTQV-------------------------------------------IL---N 274 (450)
T ss_dssp HHHHHHHHHHHTTS---CHH-------HHHH-------------------------------------------HH---T
T ss_pred HHHHHHHHHHHhhC---ChH-------HHHH-------------------------------------------HH---H
Confidence 88888888777651 110 0000 00 0
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhh
Q 001307 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1103)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (1103)
.. +++.+..++.++++..|..|+.+|+.++.+..+.....+. .+++.++..+.++++.||..|+++|+.++...
T Consensus 275 -~~----~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 349 (450)
T 2jdq_A 275 -CS----ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGG 349 (450)
T ss_dssp -TT----HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC
T ss_pred -Cc----cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 11 3455566777888999999999999999887765554443 68888888999999999999999999999764
Q ss_pred chhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc------cccCchHHH-----HHHHHHHhhcCCh
Q 001307 450 GPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE------ILTPYLDGI-----VSKLLVLLQNGKQ 517 (1103)
Q Consensus 450 ~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~------~l~~~l~~l-----l~~L~~~l~~~~~ 517 (1103)
.+...... ...++|.|+..+++ +++.++..++++|.+++...+.. .+.+|...+ ++.+..+..+++.
T Consensus 350 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 428 (450)
T 2jdq_A 350 SAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQ 428 (450)
T ss_dssp CHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 33221222 34699999999998 88999999999999998754321 234666666 5677777777778
Q ss_pred hHHHHHHHHHHHHH
Q 001307 518 MVQEGALTALASVA 531 (1103)
Q Consensus 518 ~v~~~al~al~~l~ 531 (1103)
.+++.++.++..+.
T Consensus 429 ~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 429 EIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
Confidence 88888888777665
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.73 E-value=3.3e-15 Score=177.21 Aligned_cols=477 Identities=16% Similarity=0.179 Sum_probs=327.9
Q ss_pred CCCh-HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCChhHHHHHHHHHHHhcccCCCCcc
Q 001307 18 GPDS-APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1103)
Q Consensus 18 ~~d~-~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~~~L~~~i~~~~~~~w 93 (1103)
|.|. ..+..++..+.++|...|+.+.-++..+.+.+|+.. ....+.+. +++++.+|..|...|.+..
T Consensus 44 G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------- 114 (591)
T 2vgl_B 44 GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------- 114 (591)
T ss_dssp TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--------
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--------
Confidence 4443 456777887788898999999998888777567653 33344443 2788999999977776542
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcc--hhHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
.++..+.+...+.+.+.+ +++.||+.++.++..+++. .| +.++ .+++.+.+++.++++.++..|+.+|+.++
T Consensus 115 ---~~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~-~p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 115 ---VDKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDI-NA-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp ---SGGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHS-SC-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhh-Ch-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 255566677777888886 7999999999999999884 34 4665 58999999999999999999999999998
Q ss_pred hhhhhh-chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001307 172 QYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1103)
Q Consensus 172 ~~~~~~-l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~ 250 (1103)
...++. ........+..+.+.+.+. ++-.+...++++..+.. . .... ...+++.+...+++.++.++..
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~----~-~~~~----~~~~l~~l~~~l~~~~~~V~~e 258 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNP----K-DDRE----AQSICERVTPRLSHANSAVVLS 258 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCC----C-SHHH----HHHHHHHHTTCSCSSTTHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCC----C-ChHH----HHHHHHHHHHHHcCCChHHHHH
Confidence 875543 2233445555666666665 77777777776644331 1 1111 2345556666677889999999
Q ss_pred HHHHHHHHHcc---chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001307 251 ALELLIELAGT---EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1103)
Q Consensus 251 ~~~~l~~l~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1103)
++.++..+... .+..+......+.+.++.+.. .+.++|..++..+..++. ..|.... +++..+
T Consensus 259 a~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---~d~~vr~~aL~~l~~i~~---~~p~~~~---~~~~~~----- 324 (591)
T 2vgl_B 259 AVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---GEPEVQYVALRNINLIVQ---KRPEILK---QEIKVF----- 324 (591)
T ss_dssp HHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT---SCHHHHHHHHHHHHHHHH---HCCSTTT---TCTTTT-----
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHH---hChHHHH---HHHHhh-----
Confidence 99999998752 344455555566666665542 468999999999999987 3453221 111110
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhh
Q 001307 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1103)
Q Consensus 328 ~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1103)
+... ++ + ..+...+++.+..... +.-+..+++.+..++.+.++..|..++.+++.++..
T Consensus 325 --~~~~-~d--------------~---~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 325 --FVKY-ND--------------P---IYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp --SCCT-TS--------------C---HHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred --eecc-CC--------------h---HHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 0000 00 1 2233445555554333 455667888888899899999999999999999987
Q ss_pred cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHH
Q 001307 408 CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1103)
Q Consensus 408 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1103)
.+. ....+++.++..+.+....|+..+..+++.+....+. ....+++.+...+.+...+.++..++|+++.
T Consensus 384 ~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGe 454 (591)
T 2vgl_B 384 VEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-----KYESIIATLCENLDSLDEPDARAAMIWIVGE 454 (591)
T ss_dssp CHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHT
T ss_pred Chh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHc
Confidence 654 3456677777778888999999998888888765432 2456778888888764678899999999999
Q ss_pred HHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhH
Q 001307 488 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAK 567 (1103)
Q Consensus 488 l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ 567 (1103)
+...... .+.+++.+.+.+...++.+|..++.++..+....+... ...+..+.+... .+..+..+|.+
T Consensus 455 y~~~~~~------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~--~d~~d~evrdR 522 (591)
T 2vgl_B 455 YAERIDN------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLAT--QDSDNPDLRDR 522 (591)
T ss_dssp TCTTCTT------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHH--TTCCCHHHHHH
T ss_pred ccccccC------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhh--hcCCChHHHHH
Confidence 8766542 34566666666666688999999999999987654322 122332333222 22244568999
Q ss_pred HHHHHHHH
Q 001307 568 SMECISLV 575 (1103)
Q Consensus 568 a~~~l~~i 575 (1103)
|.+.++.+
T Consensus 523 A~~y~~ll 530 (591)
T 2vgl_B 523 GYIYWRLL 530 (591)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 98887665
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.73 E-value=8e-13 Score=156.23 Aligned_cols=674 Identities=12% Similarity=0.073 Sum_probs=414.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCC---C
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD---S 90 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~---~ 90 (1103)
+++.+++-. .+.|.+.|.+|-..|--+...++ ++ +..|..++.+..++++.-.|.-.|-.+...+. .
T Consensus 9 ~~m~~i~~~-~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~ 86 (810)
T 3now_A 9 KQMMDLTFD-LATPIDKRRAAANNLVVLAKEQTGAELLYKDHC-IAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTK 86 (810)
T ss_dssp HHHHHHHHS-SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcc-cccCHHHHHHHHhhceeeeccccchHHHHhCch-HHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHH
Confidence 344444444 46677888888877655544322 22 46677777766889988888888877776640 0
Q ss_pred CccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC----CC-------------CcchhHHHHHHhhc
Q 001307 91 FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP----EN-------------GWPELLPFMFQCVS 153 (1103)
Q Consensus 91 ~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~----~~-------------~w~~ll~~l~~~~~ 153 (1103)
..|..+. ...+++.+.+ .+..+-..++.++..+....-. .. ....++..|...+.
T Consensus 87 ~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (810)
T 3now_A 87 GVLTELG-------VPWFMRVLDQ-KHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSIT 158 (810)
T ss_dssp HHHHHSC-------HHHHHHHHHC-CSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC-------HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhh
Confidence 1122222 2356777777 5777888888888777654321 10 11345667777777
Q ss_pred CC--CHhHHHHHHHHHHHhhhhh----hhhchhhHHHHHHHHHHhhCCC---------CChHHHHHHHHHHHHHHHhcCC
Q 001307 154 SD--SVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNS---------NNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 154 s~--~~~~r~~al~~l~~l~~~~----~~~l~~~~~~l~~~l~~~l~~~---------~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
+. ....|..++.++-.-+.+- +..+.. ...+..++.-+-.-+ -..++|..+.-++..+.+.+..
T Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~ 237 (810)
T 3now_A 159 DRTISGAARDGVIELITRNVHYTALEWAERLVE-IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYY 237 (810)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHH-TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred ccccChhhHHHHHHHHHHhCCccccccccchhh-HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhcc
Confidence 76 4578999998877766432 111111 012222222222211 1468899999999999988765
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH--HHHHHHHHHhhcCCCcchHHHHHHHH
Q 001307 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL--VDVVGSMLQIAEAESLEEGTRHLAIE 296 (1103)
Q Consensus 219 ~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~r~~a~~ 296 (1103)
...++.|...+..+++. .+..++.+....++..+..+....+..-...+ ...++.++..+.. .++.++..|++
T Consensus 238 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s--~~~~~q~~A~~ 312 (810)
T 3now_A 238 DEAKARFTDQIDEYIKD---KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT--DDELQQRVACE 312 (810)
T ss_dssp HHHHHHHHHHHHHHHHH---HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS--SCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH---HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC--CCHHHHHHHHH
Confidence 44566677755555544 44567777788889999988876655433332 2566777777654 36888999999
Q ss_pred HHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC---C-C
Q 001307 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG---G-N 372 (1103)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~---~-~ 372 (1103)
.+..++.. +. .|.. ..+.-+|.+...+...+ ...+..|..+|.+++...+ + .
T Consensus 313 al~~aa~~----~~-~R~~--I~~~gv~~L~~Ll~s~~-----------------~~vr~~Al~~L~kl~s~~~~d~~~~ 368 (810)
T 3now_A 313 CLIAASSK----KD-KAKA--LCEQGVDILKRLYHSKN-----------------DGIRVRALVGLCKLGSYGGQDAAIR 368 (810)
T ss_dssp HHHHHTTS----HH-HHHT--THHHHHHHHHHHTTCSC-----------------HHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred HHHHHcCC----cH-HHHH--HHHcCcHHHHHHHcCCC-----------------HHHHHHHHHHHHHhccccccCcccc
Confidence 99987763 21 2211 22222377766654211 1133346667777764332 1 1
Q ss_pred c----chHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHHHHHHh-HHHHHHHHHhcCCCCChhHHHHHHHHHHHh
Q 001307 373 T----IVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1103)
Q Consensus 373 ~----~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l 445 (1103)
. -+..+++.+..++.++ +...|..|+.+|+.++........-. -...+|.++..++++++.+++.|.++|+.+
T Consensus 369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NL 448 (810)
T 3now_A 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNL 448 (810)
T ss_dssp SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 1 1355678888888887 88999999999999987654321111 135778888888888999999999999999
Q ss_pred hhhhchh----------------------------H----HhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 446 STDLGPD----------------------------L----QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 446 ~~~~~~~----------------------------~----~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
+...... . ..-.-...+|.|+..+.+ +++.+|..|+++|.+++..-
T Consensus 449 t~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d~- 526 (810)
T 3now_A 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGLK- 526 (810)
T ss_dssp TTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTSH-
T ss_pred cCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCH-
Confidence 9743100 0 000122578999999998 89999999999999998531
Q ss_pred cccccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh--hHh-hHhhhhHHHHHHHhhcCCcccchhhhHHH
Q 001307 494 PEILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH--FQK-YYDAVMPFLKAILVNATDKSNRMLRAKSM 569 (1103)
Q Consensus 494 ~~~l~~~-l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~--~~~-~~~~i~~~l~~~l~~~~~~~~~~lr~~a~ 569 (1103)
+..... -...++.|+.++.+++...|+.|..+++.++...... |.. .....+|.|..++... .....+..|+
T Consensus 527 -~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~---~~~l~~~eAl 602 (810)
T 3now_A 527 -ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD---CTALENFESL 602 (810)
T ss_dssp -HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT---SCHHHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC---CcHHHHHHHH
Confidence 111111 1245788888899999999999999999998654332 211 1234788888887532 1222344578
Q ss_pred HHHHHHHHhhChhhhhhhH--HHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccch--hhhhHHHHHhccc
Q 001307 570 ECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM--SVVMPPLLQSAQL 645 (1103)
Q Consensus 570 ~~l~~i~~~~~~~~~~~~~--~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l--~~i~~~ll~~~~~ 645 (1103)
.+++.++..- +.....+ ...++.+..++.+ .+..++..+..++++++..- +....+. ...++.|+..+..
T Consensus 603 ~AL~NLa~~~--d~~~~~Ii~aG~l~~Lv~LL~s---~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 603 MALTNLASMN--ESVRQRIIKEQGVSKIEYYLME---DHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHS---CCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHhcCC--HHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcC
Confidence 8888887532 1111110 1123444443332 23457888888999887532 1222222 2467777777643
Q ss_pred CCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHhcccccc
Q 001307 646 KPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKF 723 (1103)
Q Consensus 646 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~--~~~~~~l~~~l~~ 723 (1103)
+ + .+.|..|+.+|+.++...+......+ ...++.++.++..
T Consensus 677 ~------------------d-------------------~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 677 E------------------D-------------------EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp S------------------S-------------------HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred C------------------C-------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 1 0 12467788899988874332221112 2355566666665
Q ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHHHHHHHHccC--CcHHHHHHHHHHHHHHHHH
Q 001307 724 YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSD-FIIPALVEALHKE--PDTEICASMLDSLNECIQI 798 (1103)
Q Consensus 724 ~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~-~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~ 798 (1103)
.+.++|+.|+.++.++... +++..+.+.+ ..++.|...+... .+.+++..++++|..+++.
T Consensus 720 -~d~~vq~~A~~aL~NL~~~-------------s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 720 -PSPAVQHRGIVIILNMINA-------------GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp -SSHHHHHHHHHHHHHHHTT-------------CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 4899999999999988753 1222222221 3556666555433 4677888888888777654
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.70 E-value=1.8e-12 Score=153.34 Aligned_cols=633 Identities=12% Similarity=0.084 Sum_probs=386.6
Q ss_pred CChHHHHHHHHHHHHhhhcCchHH--------HHHHHHHHccCCChhHHHHHHHHHHHhcccC---CCCcccc----CCH
Q 001307 34 TSNEQRSEAELLFNLCKQQDPDSL--------TLKLAHLLQRSPHPEARAMAAVLLRKLLTRD---DSFLWPR----LSL 98 (1103)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~--------~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~---~~~~w~~----l~~ 98 (1103)
.|++.+-.|-..|.++.+.++... .++++.++. +.++++-..++.++...+..- +.....+ +-.
T Consensus 62 ~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (810)
T 3now_A 62 KDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD-QKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCT 140 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH-CCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHh
Confidence 577888888888888877553322 355666665 466777777777777665541 1111111 112
Q ss_pred HHHH---HHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcccCCCCcchh------HHHHHHhhcC-C----------CH
Q 001307 99 HTQS---SLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPENGWPEL------LPFMFQCVSS-D----------SV 157 (1103)
Q Consensus 99 ~~~~---~ik~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~~~~w~~l------l~~l~~~~~s-~----------~~ 157 (1103)
+.+. .+...|++.+.+. -....|..+.+.+.+-+.+. ...|++- +..++..... + .+
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~ 218 (810)
T 3now_A 141 RNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT--ALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITG 218 (810)
T ss_dssp HTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCT--TTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCT
T ss_pred hhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCcc--ccccccchhhHhhHHHHHHHHhcCccccccccCCCCh
Confidence 2333 3444555555543 35567887766665544321 1244422 2233333322 1 24
Q ss_pred hHHHHHHHHHHHhhhhhhh-hchhhHHHHHH-HHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHH
Q 001307 158 KLQESAFLIFAQLSQYIGD-TLTPHLKHLHA-VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (1103)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~-~l~~~~~~l~~-~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~ 235 (1103)
+.|..+..++..+.+.... .-++.+...+. ++..-+... +.+-...|+.++..++..-.+. ....+. -..+++.
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~alt~i~~g~~~~-~~~~~~--~~G~v~~ 294 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAP-DMESKVRVTVAITALLNGPLDV-GNQVVA--REGILQM 294 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHSSSHHH-HHHHHH--TTTHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccC-ChHhHHHHHHHHHHHhcCCHHH-HHHHHh--ccchHHH
Confidence 7899999999999887551 11233444443 344445554 7777888899999888653211 111110 1135555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001307 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1103)
Q Consensus 236 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 314 (1103)
+...+.++++.++..+++++...+.. ...+.++ ..-++.+..++.. .++.+|..|...|..+....+..+. .+.
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s--~~~~vr~~Al~~L~kl~s~~~~d~~-~~~ 369 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHS--KNDGIRVRALVGLCKLGSYGGQDAA-IRP 369 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTTTTTTS-CCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcC--CCHHHHHHHHHHHHHhccccccCcc-ccc
Confidence 66667788999999999999997765 2222222 2223777777753 3477888888777777642110111 011
Q ss_pred c-hhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-Ccch--HHHHHHHHHhhcCCC
Q 001307 315 L-PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-NTIV--PVASEQLPAYLAAPE 390 (1103)
Q Consensus 315 ~-~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~~~~ 390 (1103)
+ ..-+..+++.+..++.....+ ......+.++|..|+..-.. ..+. .-++|.+.+++++.+
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d---------------~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d 434 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKD---------------KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN 434 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCC---------------SSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred hhhccHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCC
Confidence 1 124678888888888754111 11345566777776532110 1111 335666777777888
Q ss_pred hHHHHHHHHHHHHHHhhcH----------------------------HHHH----HhHH-HHHHHHHhcCCCCChhHHHH
Q 001307 391 WQKHHAALIALAQIAEGCA----------------------------KVMV----KNLE-QVLSMVLNSFRDPHPRVRWA 437 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~----------------------------~~~~----~~l~-~i~~~l~~~l~d~~~~vr~~ 437 (1103)
....+.++.+|+.++.+.. +... ..+. ..+|.+...++++++.+|..
T Consensus 435 ~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~ 514 (810)
T 3now_A 435 QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514 (810)
T ss_dssp GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHH
Confidence 8999999999999987531 0111 1111 46788999999999999999
Q ss_pred HHHHHHHhhhhhchhHHhh-hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccC--chHHHHHHHHHHhhc
Q 001307 438 AINAIGQLSTDLGPDLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP--YLDGIVSKLLVLLQN 514 (1103)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~--~l~~ll~~L~~~l~~ 514 (1103)
|+|+|+.++..- + .... .-...+|.|+..+.+ +++.++..|+++|.+++....++...+ .....++.|+.++.+
T Consensus 515 Aa~aL~NLA~d~-~-~r~~Vv~~Gaip~Lv~LL~s-~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 515 IARVLNAVCGLK-E-LRGKVVQEGGVKALLRMALE-GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHTSH-H-HHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHcCCH-H-HHHHHHHCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 999999999642 2 2122 234688999999988 788999999999999997765442211 123467888888876
Q ss_pred CC-hhHHHHHHHHHHHHHHhhhhhhHhhH-hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhH--HH
Q 001307 515 GK-QMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQ 590 (1103)
Q Consensus 515 ~~-~~v~~~al~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~--~~ 590 (1103)
.. ...+..|+.+++.++....+.-.... ...+|.|..++... ...+|..|.++++.++. +.+....+. ..
T Consensus 592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~----~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g 665 (810)
T 3now_A 592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED----HLYLTRAAAQCLCNLVM--SEDVIKMFEGNND 665 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC----CTTHHHHHHHHHHHHTT--SHHHHHHHHSSSS
T ss_pred CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhC--ChHHHHHHHhccC
Confidence 53 34556899999999876433222222 35678888877642 34578899999999975 333333333 24
Q ss_pred HHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccch--hhhhHHHHHhcccCCCccccCCCCCccccCCCCccc
Q 001307 591 VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM--SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668 (1103)
Q Consensus 591 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l--~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 668 (1103)
.++.++.+..+ .+..++..+..++++++..........+ ...+|.|...+... +
T Consensus 666 ~l~~Lv~LL~s---~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~------------------d--- 721 (810)
T 3now_A 666 RVKFLALLCED---EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP------------------S--- 721 (810)
T ss_dssp HHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS------------------S---
T ss_pred cHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC------------------C---
Confidence 67788876653 2345777888899988875333322223 35777777777431 1
Q ss_pred chhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHhccccccc--CCHHHHHHHHHhHHHHHHH
Q 001307 669 ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFY--FHEEVRKAAVSAMPELLRS 743 (1103)
Q Consensus 669 ~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~--~~~~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~ 743 (1103)
.+.|..|+.++..+...-+ ....++ ..+++.+..++... .+.+++..|..+|..++..
T Consensus 722 ----------------~~vq~~A~~aL~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 722 ----------------PAVQHRGIVIILNMINAGE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 1236678888888876322 222222 23556666666533 3678999999999888765
No 31
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=1.1e-16 Score=166.60 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=177.0
Q ss_pred CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhc
Q 001307 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
..+.+.+.+.+.+.+++.+|+.|.+|+..|..+++++++.....+.++++.+...+. |+++.||..|+.+++.++..++
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 445555555667788899999999999999999988654333456788999999995 9999999999999999999999
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001307 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1103)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l 530 (1103)
+.+ ..|.+.++|.++..+.| +++.||..|+.++..++...+ ++.+++.+...+++.++.+|..++..++.+
T Consensus 90 ~~~-~~~~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 90 KRF-SNYASACVPSLLEKFKE-KKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp GGG-HHHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 888 78999999999999999 899999999999999987643 577889999999999999999999999998
Q ss_pred HHhhh-h-hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001307 531 ADSSQ-E-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1103)
Q Consensus 531 ~~~~~-~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i 591 (1103)
+...+ . .+.+|++.++|.+...+.. ....+|..|++|++.++..+|.+.|.|+++.+
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D----~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNE----PDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 87764 2 3678999999999999843 45679999999999999999977788876543
No 32
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.70 E-value=1.2e-10 Score=144.35 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=166.1
Q ss_pred hHHHHHHHHHhcCCC--CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC----CCcchHHHHHHHHHHH
Q 001307 415 NLEQVLSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF----QNPRVQAHAASAVLNF 488 (1103)
Q Consensus 415 ~l~~i~~~l~~~l~d--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~~v~~~a~~al~~l 488 (1103)
.++.+++.+...+.+ .+++.|+++++++|.+++.+.+....++++.++|.|+..+.+. +...|+..++++++++
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 334445555544443 6899999999999999998877644688999999999877520 3456788899999999
Q ss_pred HhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH--------hhHhhhhHHHHHHHhhcCCcc
Q 001307 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--------KYYDAVMPFLKAILVNATDKS 560 (1103)
Q Consensus 489 ~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~--------~~~~~i~~~l~~~l~~~~~~~ 560 (1103)
.+.+... ..|++++++.|+..+.++++.++..|+.++..++..++..+. ||++.++..+.......
T Consensus 528 ~~wl~~~--~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l---- 601 (1023)
T 4hat_C 528 PRFLKAH--WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL---- 601 (1023)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS----
T ss_pred HHHHhcc--HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC----
Confidence 9887532 468999999999999888899999999999999999888773 69999998888877542
Q ss_pred cchhhhHHHHHHHHHHHhhChhh-hhhhHHHHHHHHHHHhcC-------CCC--CC---CchhhHHHHHHHHHHhHhcCC
Q 001307 561 NRMLRAKSMECISLVGMAVGKDK-FRDDAKQVMEVLMSLQGS-------QME--TD---DPTTSYMLQAWARLCKCLGQD 627 (1103)
Q Consensus 561 ~~~lr~~a~~~l~~i~~~~~~~~-~~~~~~~i~~~l~~l~~~-------~~~--~~---~~~~~~~~~~~~~l~~~~~~~ 627 (1103)
...-+..++++++.++.+++.+. -..++..+++.+...++. ..+ .| ......++++++.++..+|..
T Consensus 602 ~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~ 681 (1023)
T 4hat_C 602 QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD 681 (1023)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHH
Confidence 12235678999999999988544 344666666554432211 000 00 112345677888999999999
Q ss_pred cccchhhhhHHHHHhc
Q 001307 628 FLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 628 ~~p~l~~i~~~ll~~~ 643 (1103)
|.||+..+.+.+++..
T Consensus 682 f~~~~~~i~~~~l~~y 697 (1023)
T 4hat_C 682 FYPQLGHIYYNMLQLY 697 (1023)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.69 E-value=5.4e-12 Score=156.37 Aligned_cols=622 Identities=12% Similarity=0.105 Sum_probs=351.4
Q ss_pred HHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhcccCCC-
Q 001307 63 HLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPEN- 139 (1103)
Q Consensus 63 ~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~- 139 (1103)
..+..+.++..|+.|-..|.+. ++. ++.|. .....|...+ +..+|.-++.++....+ .++..
T Consensus 14 ~~~~p~sd~~~r~~A~~~L~~~-q~s-p~aw~------------~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~l~~e~ 78 (980)
T 3ibv_A 14 AALDPSVGPIIKQQATDFIGSL-RSS-STGWK------------ICHEIFSEKTKYKPSTRLICLQTLSEKVR-EWNNES 78 (980)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHH-HHS-TTHHH------------HHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HCCTTT
T ss_pred HHhCCCCCHHHHHHHHHHHHHH-HcC-hhHHH------------HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-hCChhh
Confidence 3343355789999998888764 222 23342 3445555432 68899999999988888 56656
Q ss_pred ---CcchhHHHHHHhhcC-----CCHhHHHHHHHHHHHhhhhh-hhhchhhHHHHHHHHHHhhCCCCCh-HHHHHHHHHH
Q 001307 140 ---GWPELLPFMFQCVSS-----DSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAV 209 (1103)
Q Consensus 140 ---~w~~ll~~l~~~~~s-----~~~~~r~~al~~l~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l 209 (1103)
....+-..+++++.. ....+|.....++..+.... +..-...++.++..+ +.+ +. ......++.+
T Consensus 79 ~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~----~~~-~~~~~~~~~LriL 153 (980)
T 3ibv_A 79 NLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVI----AAS-SQSEFSNFYLKVL 153 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----HHH-CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHh----cCC-ChhHHHHHHHHHH
Confidence 566666666666542 23456666666677666653 333233344444443 332 22 3334455555
Q ss_pred HHHHHhcCCcc---------h----HhH-----HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH
Q 001307 210 INFIQCLTSSA---------D----RDR-----FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV 271 (1103)
Q Consensus 210 ~~l~~~~~~~~---------~----~~~-----~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 271 (1103)
..+-+.+.+.. . .+. +..+++.+++.+..+..+.++..+..+++++...+.--+....-. .
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-E 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-H
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-c
Confidence 54444321100 0 111 222356666666666655788888999999998887433222111 4
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchh----h---------------hcch----------------
Q 001307 272 DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM----M---------------RKLP---------------- 316 (1103)
Q Consensus 272 ~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~---------------~~~~---------------- 316 (1103)
.+++.++..+. ++++|..|++++..++..+.. |.. . ..-.
T Consensus 233 ~ll~~l~~~L~----~~~~r~~A~ecL~ei~~k~~~-~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 233 PCMNLLYSFLQ----IEELRCAACETMTEIVNKKMK-PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HHHHHHHHHTT----SHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC----ChHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 66666666663 367788888888777663210 100 0 0000
Q ss_pred --------------------hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHH---cCC--
Q 001307 317 --------------------QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA---LGG-- 371 (1103)
Q Consensus 317 --------------------~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~---~~~-- 371 (1103)
+.+..+++.++..+... ++ + ....+...+..+... .+.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~------------~d---e--Vs~~t~~Fw~~~l~~~~~~~~~~ 370 (980)
T 3ibv_A 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD------------YD---E--TSTAVFPFLSDLLVSLRKESSSK 370 (980)
T ss_dssp HHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS------------SH---H--HHHTTHHHHHHHHHHHHHHTTSC
T ss_pred HHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC------------ch---h--HHHHHHHHHHHHHHHHHhccccc
Confidence 11112222222222111 00 0 111111112222111 111
Q ss_pred ---C---cchHHHHHHHHHhhc---CCCh-------------HHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCC
Q 001307 372 ---N---TIVPVASEQLPAYLA---APEW-------------QKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFR 428 (1103)
Q Consensus 372 ---~---~~~~~l~~~l~~~l~---~~~~-------------~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~ 428 (1103)
. .+++.+++.+...++ +.+| ..|+..-..+..++...++.+..++- .+.+.+...+.
T Consensus 371 ~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~ 450 (980)
T 3ibv_A 371 ELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAAT 450 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc
Confidence 1 223333333333332 1123 13332223344444334443333222 33344444442
Q ss_pred ---CCChhHHHHHHHHHHHhhhhhchhHH-----hhhhhhhHHHHHhhcc-----CCCCcchHHHHHHHHHHHHhcCCcc
Q 001307 429 ---DPHPRVRWAAINAIGQLSTDLGPDLQ-----NQFHPQVLPALAGAMD-----DFQNPRVQAHAASAVLNFSENCTPE 495 (1103)
Q Consensus 429 ---d~~~~vr~~a~~~L~~l~~~~~~~~~-----~~~~~~il~~l~~~l~-----~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1103)
+.+++.+++++.+++.+++.+..... ..+.+.+++.+...++ + +++.||..++++++++.+.+...
T Consensus 451 ~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~-~hp~V~~~~~~~l~rys~~~~~~ 529 (980)
T 3ibv_A 451 LSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRH-PHPLVQLLYMEILVRYASFFDYE 529 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTC-CCHHHHHHHHHHHHHTGGGGGTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999998764221 2456677777777654 5 78999999999999999988643
Q ss_pred cccCchHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCc---cc---------
Q 001307 496 ILTPYLDGIVSKLLV--LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK---SN--------- 561 (1103)
Q Consensus 496 ~l~~~l~~ll~~L~~--~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~---~~--------- 561 (1103)
..|++.+++.++. .+.++++.++..|..++..+++.++..+.||++.++..+...+.....+ ++
T Consensus 530 --~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~ 607 (980)
T 3ibv_A 530 --SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSS 607 (980)
T ss_dssp --CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHH
T ss_pred --chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhh
Confidence 4789999999999 8888889999999999999999999999999999988888776631111 00
Q ss_pred -----chhhhHHHHHHHHHHHhhC--hhhhhhhHHHHHHHHHH----HhcCCCCCCCc--hhhHHHHHHHHHHhHhcCC-
Q 001307 562 -----RMLRAKSMECISLVGMAVG--KDKFRDDAKQVMEVLMS----LQGSQMETDDP--TTSYMLQAWARLCKCLGQD- 627 (1103)
Q Consensus 562 -----~~lr~~a~~~l~~i~~~~~--~~~~~~~~~~i~~~l~~----l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~- 627 (1103)
..-+-..++++|.+..+.+ .+.-..++..+++.++. ........++. .....+.+++++++.+...
T Consensus 608 ~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 608 IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 1124457999999998765 34455666777665554 22211111122 1224566788888877533
Q ss_pred -----cccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHh
Q 001307 628 -----FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL 702 (1103)
Q Consensus 628 -----~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~ 702 (1103)
+...+..+++.++..+..-+. ...-++.++.++..+...+
T Consensus 688 ~~~~p~~~~f~~~~~~il~~l~~~~~-----------------------------------~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 688 SEEVAWLASFNKASDEIFLILDRMGF-----------------------------------NEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHSCC-----------------------------------SHHHHHHHHHHHHHHTTTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCC-----------------------------------cHHHHHHHHHHHHHHHHHc
Confidence 222333555555554432100 0122456788999999999
Q ss_pred hhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHcc
Q 001307 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK 778 (1103)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~ 778 (1103)
|..+.|+++++++.++..++. .+. ......++.++... +...-+.+..++..++.+++..+..
T Consensus 733 g~~~~p~lp~~i~~ll~~~~~---~e~-~~fL~l~~qli~~f---------~~~~~~~l~~ll~~l~~~if~~l~~ 795 (980)
T 3ibv_A 733 GPDMLPKVPQLISILLNSIDM---NEL-VDVLSFISQLIHIY---------KDNMMEITNRMLPTLLMRIFSSLSA 795 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHCCT---TTH-HHHHHHHHHHHHHT---------TTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHhHHHHHHHHHHHHHhcCCH---HHH-HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998754331 121 12233344444332 1224445666666666666666654
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=2.3e-14 Score=169.98 Aligned_cols=482 Identities=13% Similarity=0.113 Sum_probs=319.8
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~--~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
..++.++-+.+.++|...|+.|-..+-.+... +.......++..+ ++++..+|+++...+....... +
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~---------~ 81 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKSQ---------P 81 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHS---------H
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccC---------c
Confidence 35677888888899988888877766543221 3233335555544 4788999999999998876432 4
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
+....+.+.+.+.+.+ +++.+|..+..+++.+. ...-++.++|.+.+++.++++.+|..|..++..+....++.+
T Consensus 82 e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 82 DMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred hHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 4444455566666676 79999988777766553 224678889999999999999999999999999998655532
Q ss_pred hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001307 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1103)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1103)
.. ..+++.+...+.|+ ++.|+..|+.+++.+....+... +..+.+..+..+...+.+.++..+...++++..+
T Consensus 157 ~~--~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~----~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 157 ED--QGFLDSLRDLIADS-NPMVVANAVAALSEISESHPNSN----LLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp HH--HHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCC----SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred cc--ccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCcc----chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 21 46889999999997 99999999999999876432110 1223334444444444556777777777777666
Q ss_pred HccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001307 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1103)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1103)
....+. ....+++.+...+. +.+..++..|+.++..+...-...|. ........+.+.++..+. .
T Consensus 230 ~~~~~~----~~~~~l~~l~~~l~--~~~~~V~~ea~~~i~~l~~~~~~~~~---~~~~~~~~~~~~L~~L~~-~----- 294 (591)
T 2vgl_B 230 NPKDDR----EAQSICERVTPRLS--HANSAVVLSAVKVLMKFLELLPKDSD---YYNMLLKKLAPPLVTLLS-G----- 294 (591)
T ss_dssp CCCSHH----HHHHHHHHHTTCSC--SSTTHHHHHHHHHHHHSCCSCCBTTB---SHHHHHHHTHHHHHHHTT-S-----
T ss_pred CCCChH----HHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHhhccCCCHH---HHHHHHHHHHHHHHHHhc-C-----
Confidence 543332 23456666666554 34678999998888877541000111 112234556666654432 1
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001307 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1103)
Q Consensus 339 w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1103)
+...+.++..++..+....+ +.+.+.+-. +. ...++++..|..++..+..++.. ..++.
T Consensus 295 ------------d~~vr~~aL~~l~~i~~~~p-~~~~~~~~~-~~-~~~~d~~~Ir~~al~~L~~l~~~------~nv~~ 353 (591)
T 2vgl_B 295 ------------EPEVQYVALRNINLIVQKRP-EILKQEIKV-FF-VKYNDPIYVKLEKLDIMIRLASQ------ANIAQ 353 (591)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHCC-STTTTCTTT-TS-CCTTSCHHHHHHHHHHHHHTCCS------STHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCh-HHHHHHHHh-he-eccCChHHHHHHHHHHHHHHCCh------hhHHH
Confidence 12355678888888887654 333332211 11 11244599999999888887654 34567
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccccc
Q 001307 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1103)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1103)
+++.+...+.+.++.+|..++++++.++..+++ ....+++.++..+.+ ....++..+..++..++...+.. .
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-----~~~~~v~~Ll~ll~~-~~~~v~~e~i~~l~~ii~~~p~~-~- 425 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-----SAERCVSTLLDLIQT-KVNYVVQEAIVVIRDIFRKYPNK-Y- 425 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHSCSS-C-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHCcch-H-
Confidence 888888899999999999999999999987653 345677888888888 67788888888999988776532 1
Q ss_pred CchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 499 ~~l~~ll~~L~~~l~~-~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
..+++.|...+++ ..+.++..+++++|..+..... .+.++..+ ++. ...+...+|..++.++..+..
T Consensus 426 ---~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l---~~~-~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 426 ---ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESF---LEG-FHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp ---CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHH---STT-CSSSCHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHH---HHh-hccCCHHHHHHHHHHHHHHHh
Confidence 2334555566653 4578888899988887665432 11222222 222 122345688888888888876
Q ss_pred hhC
Q 001307 578 AVG 580 (1103)
Q Consensus 578 ~~~ 580 (1103)
..+
T Consensus 494 ~~p 496 (591)
T 2vgl_B 494 KKP 496 (591)
T ss_dssp TCC
T ss_pred cCc
Confidence 554
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.69 E-value=4.1e-15 Score=175.20 Aligned_cols=403 Identities=13% Similarity=0.133 Sum_probs=281.9
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC
Q 001307 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1103)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~ 137 (1103)
++.|++.+. +.++.+|..|+..|++++.......+. .-....+...|++.|.++.++.+|..++.+++.++...-.
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~---~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPID---VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHH---HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHH---HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 577788776 457899999999999998753111111 1122345567777777644889999999999999873210
Q ss_pred C-CC--cchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 001307 138 E-NG--WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1103)
Q Consensus 138 ~-~~--w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1103)
. .. ....+|.|.+++.++++.+|+.|+.+|+.++...++.-.. ....+++.+...+.+. +..++..|+.++..+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHh
Confidence 0 01 1467899999999999999999999999998753221100 1124677888888886 8999999999999998
Q ss_pred HhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHH
Q 001307 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRH 292 (1103)
Q Consensus 214 ~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~ 292 (1103)
...............+| .+...+.++++.++..++.+|..++...+......+. .+++.++.++.. .+..+|.
T Consensus 244 ~~~~~~~~~~~~~~~l~----~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~~ 317 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALP----TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQT 317 (530)
T ss_dssp CCSSSCCCHHHHGGGHH----HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHH
T ss_pred CCCCCCCcHHHHHhHHH----HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhHH
Confidence 65311112222334444 4555566788999999999999999876655444443 567777777753 4678888
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC
Q 001307 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1103)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1103)
.|+..+..++.. .+. .... .+ . .
T Consensus 318 ~a~~~L~~l~~~---~~~-------~~~~---------------------------------------~~-----~---~ 340 (530)
T 1wa5_B 318 PALRAVGNIVTG---NDL-------QTQV---------------------------------------VI-----N---A 340 (530)
T ss_dssp HHHHHHHHHTTS---CHH-------HHHH---------------------------------------HH-----H---T
T ss_pred HHHHHHHHHHcC---CHH-------HHHH---------------------------------------HH-----H---c
Confidence 888888777651 110 0000 00 0 1
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
. +++.+..++.+++|..|..|+.+|+.++.+.++.+...+. .+++.++..+.++++.+|..|+++|+.++....+
T Consensus 341 ~----~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 341 G----VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416 (530)
T ss_dssp T----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred c----hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 1 3445566777889999999999999999877765554443 5778888888889999999999999999986543
Q ss_pred --hHHhh-hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc------cccCchHHH-----HHHHHHHhhcCCh
Q 001307 452 --DLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE------ILTPYLDGI-----VSKLLVLLQNGKQ 517 (1103)
Q Consensus 452 --~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~------~l~~~l~~l-----l~~L~~~l~~~~~ 517 (1103)
..... ....+++.|+..+.+ +++.++..++++|..++...+.. ...+|...+ ++.|..+..+++.
T Consensus 417 ~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~ 495 (530)
T 1wa5_B 417 RPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 495 (530)
T ss_dssp CTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCH
T ss_pred cHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 22111 234699999999998 88999999999999998765321 123454443 6677777888888
Q ss_pred hHHHHHHHHHHHHHHh
Q 001307 518 MVQEGALTALASVADS 533 (1103)
Q Consensus 518 ~v~~~al~al~~l~~~ 533 (1103)
.+++.+..++..+...
T Consensus 496 ~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 496 KIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHCCc
Confidence 9999888888776543
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.68 E-value=9.8e-15 Score=172.01 Aligned_cols=359 Identities=16% Similarity=0.132 Sum_probs=253.0
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCc-----chhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhch
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGW-----PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLT 179 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~ 179 (1103)
..+++.|.+ .++.+|..++.++..++...-. ..+ ..++|.|.+++.++ ++.+|..|+.+|+.++...++...
T Consensus 90 ~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 90 PQMTQQLNS-DDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp HHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 456777877 5888999999999988764311 222 35789999999987 889999999999999875433211
Q ss_pred hh-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001307 180 PH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1103)
Q Consensus 180 ~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1103)
.. -...++.+...+.++ ++.+|..|+.+|+.+....+ .....+. -...++.+...+.+.++.++..++.+|..+
T Consensus 168 ~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~--~~~~~~~--~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDST--DYRDYVL--QCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCH--HHHHHHH--HTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCc--cchHHHH--HcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 11 134567777788876 89999999999999986421 0111111 012344445555667889999999999999
Q ss_pred Hccc-hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001307 259 AGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1103)
Q Consensus 259 ~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1103)
+... +..-......+++.++.++.+ .++.++..++..+..++.. .+. .... +
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~L~~~---~~~-------~~~~----~----------- 295 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYS--MDTETLVDACWAISYLSDG---PQE-------AIQA----V----------- 295 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHHSS---CHH-------HHHH----H-----------
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCC---CHH-------HHHH----H-----------
Confidence 9654 222122345667777777753 4678899999888888762 110 0000 0
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001307 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1103)
Q Consensus 338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1103)
.. ..++ +.+..++.+.+|..|..|+.+|+.++.+........+.
T Consensus 296 ----------------------------~~----~~~v----~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 296 ----------------------------ID----VRIP----KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp ----------------------------HH----TTCH----HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ----------------------------Hh----cCcH----HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 1223 33445666788999999999999998876654433332
Q ss_pred -HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc--
Q 001307 418 -QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-- 494 (1103)
Q Consensus 418 -~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-- 494 (1103)
.+++.+...+.++++.+|..|+++|+.++.........-.-..++|.|+..+.+ +++.++..|+++|.+++....+
T Consensus 340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~ 418 (530)
T 1wa5_B 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV-AEYKTKKEACWAISNASSGGLQRP 418 (530)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCcH
Confidence 688899999999999999999999999997544433111235789999999988 8899999999999999987543
Q ss_pred ccccCchH--HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 495 EILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 495 ~~l~~~l~--~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
+.. .++- .+++.|..++.+.++.++..++.++..+....+.
T Consensus 419 ~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 419 DII-RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHH-HHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 221 2222 3678889999999999999999999999876554
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.68 E-value=1.9e-14 Score=169.59 Aligned_cols=359 Identities=15% Similarity=0.184 Sum_probs=252.8
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH-HhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHccch
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF-QDLLPLMMRTLTESLNNGN-EATAQEALELLIELAGTEP 263 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~ip~ll~~l~~~l~~~~-~~~~~~~~~~l~~l~~~~~ 263 (1103)
++.+...+.++ ++.+|..|+.++..++............ ...+|.+ ...+.+++ +.++..++.+|..++...+
T Consensus 76 l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~L----v~lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF----VQFLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHH----HHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHH----HHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 55667777886 8999999999999998754211111111 2344444 44555665 8999999999999998655
Q ss_pred HHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccc
Q 001307 264 RFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWH 340 (1103)
Q Consensus 264 ~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~ 340 (1103)
......+. ..++.++.++.. .+..+|..|+..|..++.. .+.. + ..+ ...++.++..+....
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~---~~~~-~---~~i~~~g~l~~Ll~lL~~~~------ 215 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGD---SPKC-R---DLVLANGALLPLLAQLNEHT------ 215 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHT---CHHH-H---HHHHHTTCHHHHHHTCCTTC------
T ss_pred HHHHHHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC---Chhh-H---HHHHHCCcHHHHHHHHhcCC------
Confidence 44333332 477788887754 4689999999999999873 2211 1 112 135677777663221
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCC--cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001307 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 417 (1103)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~- 417 (1103)
+......+..+|..++...+.. .....+++.+...+.+.++..+..++.+|+.++.+........+.
T Consensus 216 ----------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 285 (528)
T 4b8j_A 216 ----------KLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (528)
T ss_dssp ----------CHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred ----------CHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 1224455677777777553211 223457778888889999999999999999999876654433333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-CcchHHHHHHHHHHHHhcCCccc
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
.+++.+...+.++++.+|..|+++|+.++.........-.-..++|.|+..+.+ + ++.++..|+++|.+++.... +.
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~A~~~L~nl~~~~~-~~ 363 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ-NLKKSIKKEACWTISNITAGNK-DQ 363 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTSCH-HH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC-CCcHHHHHHHHHHHHHHHCCCH-HH
Confidence 578899999999999999999999999997544333222335689999999998 6 89999999999999987432 21
Q ss_pred ccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHH
Q 001307 497 LTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1103)
Q Consensus 497 l~~~l-~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1103)
....+ ..+++.|+.++.+.+..++..++.+++.++.........|+ ..+++.|...+.. .+..++..++.+++
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----~d~~v~~~al~~L~ 439 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----PDIRIVTVCLEGLE 439 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 21111 25678888888888999999999999999987544555555 4688888888754 23457888999999
Q ss_pred HHHHhhC
Q 001307 574 LVGMAVG 580 (1103)
Q Consensus 574 ~i~~~~~ 580 (1103)
.+.....
T Consensus 440 ~l~~~~~ 446 (528)
T 4b8j_A 440 NILKVGE 446 (528)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.66 E-value=3.2e-13 Score=160.45 Aligned_cols=488 Identities=15% Similarity=0.145 Sum_probs=299.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhc-Cc-hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHH
Q 001307 24 FETLISHLMSTSNEQRSEAELLFNLCKQQ-DP-DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1103)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p-~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1103)
+.++-+.+.++|...|+.+-..|-.+.-. ++ .......+..+. +++...|+++-..+..++..+ ++..
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~---------~e~~ 105 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDER---------QDVH 105 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCC---------HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCC---------cHHH
Confidence 33344444555555555554443332111 11 111233333333 678889999999888877543 5655
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhh
Q 001307 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH 181 (1103)
Q Consensus 102 ~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~ 181 (1103)
-.+-+.+.+.|.+ +++.+|..+..+++.+.... -.+.+++.+..++.++++.+|..|+.++..+....++.+
T Consensus 106 ~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--- 177 (618)
T 1w63_A 106 LLMTNCIKNDLNH-STQFVQGLALCTLGCMGSSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--- 177 (618)
T ss_dssp HHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred HHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence 6667778888886 79999999999999886422 236778999999999999999999999999998766543
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-----------CCHHHHHH
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-----------GNEATAQE 250 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~-----------~~~~~~~~ 250 (1103)
..+++.+...+.|. ++.|+.+|+.++..+...-+ .....+..++|.+++.|.....+ .++..+..
T Consensus 178 -~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~--~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSP--DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHH--HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 35666777888887 99999999999998864311 11235677888888888776542 35666666
Q ss_pred HHHHHHHHHccchHHHHHhHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001307 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAE-AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1103)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1103)
.+++|..++...+..- +.+.+++..++.-.. .++.+..+...|..+ +..
T Consensus 254 il~~L~~l~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~----------------------------i~~- 303 (618)
T 1w63_A 254 ILRLLRILGRNDDDSS-EAMNDILAQVATNTETSKNVGNAILYETVLT----------------------------IMD- 303 (618)
T ss_dssp HHHHHHHHTTTCHHHH-HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH----------------------------HHH-
T ss_pred HHHHHHHhCCCCHHHH-HHHHHHHHHHHhccccccchHHHHHHHHHHH----------------------------HHh-
Confidence 7777776665433211 111111111111000 000011111111111 111
Q ss_pred hcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH
Q 001307 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA 409 (1103)
Q Consensus 330 l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 409 (1103)
.. ..........+.+..++.+.+...|++|+.+++.++...+
T Consensus 304 ---l~-----------------------------------~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p 345 (618)
T 1w63_A 304 ---IK-----------------------------------SESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH 345 (618)
T ss_dssp ---SC-----------------------------------CCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH
T ss_pred ---cC-----------------------------------CCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH
Confidence 00 0000111122334445677888999999999999988766
Q ss_pred HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
..+.++. +.++.++.|+++.||..|+.+|..++.. .....+++.+...+.+ .+..+|..++.++..++
T Consensus 346 ~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~~-------~nv~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la 413 (618)
T 1w63_A 346 NAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVNG-------NNIRGMMKELLYFLDS-CEPEFKADCASGIFLAA 413 (618)
T ss_dssp HHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCCS-------SSTHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHccc-------ccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence 6554544 4566678999999999999999998753 2245677777777777 77899999999999999
Q ss_pred hcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHH
Q 001307 490 ENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSM 569 (1103)
Q Consensus 490 ~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~ 569 (1103)
..+.+. ....++.++..+......++..++.++..+....++. ...+++.+...+..... ...+...++
T Consensus 414 ~k~~~~-----~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l----~~~~v~~L~~~l~~~~~--~~~~~~~~~ 482 (618)
T 1w63_A 414 EKYAPS-----KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM----HAYTVQRLYKAILGDYS--QQPLVQVAA 482 (618)
T ss_dssp HSSCCC-----HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST----HHHHHHHHHHHHHHCCS--CSHHHHHHH
T ss_pred HHhCcc-----HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH----HHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 877543 3444555566666655566666777777777654421 22345555555554211 122334589
Q ss_pred HHHHHHHHhhChh------hhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc
Q 001307 570 ECISLVGMAVGKD------KFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1103)
Q Consensus 570 ~~l~~i~~~~~~~------~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1103)
+++|..+..+... .+...-..+++.+..+... +..+..++.+++.++..+....+
T Consensus 483 wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~vr~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 483 WCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLIS-NMSTSVTRGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHhCc
Confidence 9999988655310 0000112233333332221 12345588899999888877664
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=3.9e-14 Score=167.04 Aligned_cols=358 Identities=15% Similarity=0.129 Sum_probs=254.8
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC----CcchhHHHHHHhhcCCC-HhHHHHHHHHHHHhhhhhhhhchh
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPEN----GWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~----~w~~ll~~l~~~~~s~~-~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
..+++.|.+ .++.+|..++.++..++...-... .-...+|.|.+++.+++ +..|..|+.+|+.++...++....
T Consensus 77 ~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 77 PAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 467788876 588999999999998877432111 11357899999999886 899999999999999754332211
Q ss_pred hH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHH--hhHHHHHHHHHHHH-hCCCHHHHHHHHHHHH
Q 001307 181 HL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ--DLLPLMMRTLTESL-NNGNEATAQEALELLI 256 (1103)
Q Consensus 181 ~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~ip~ll~~l~~~l-~~~~~~~~~~~~~~l~ 256 (1103)
.. ...++.+...+.++ +..+|..|+.+|+.+....+ .....+. ..+|.+ ...+ .+.++.++..++.+|.
T Consensus 156 ~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~--~~~~~i~~~g~l~~L----l~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSP--KCRDLVLANGALLPL----LAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCH--HHHHHHHHTTCHHHH----HHTCCTTCCHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCh--hhHHHHHHCCcHHHH----HHHHhcCCCHHHHHHHHHHHH
Confidence 11 24788899999997 99999999999999986421 1111111 234444 4444 4568899999999999
Q ss_pred HHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCC
Q 001307 257 ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1103)
Q Consensus 257 ~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1103)
.++...+..-......+++.+..++.. .+..++..++..+..++.. .+ .....+
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~---~~-------~~~~~~-------------- 282 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHS--NDEEVLTDACWALSYLSDG---TN-------DKIQAV-------------- 282 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTC--CCHHHHHHHHHHHHHHTSS---CH-------HHHHHH--------------
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHcC---CH-------HHHHHH--------------
Confidence 999865332223345677777777743 4678888888888877651 11 000000
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH
Q 001307 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1103)
Q Consensus 337 ~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1103)
.. .. +++.+..++.+.++..|..|+.+|+.++.+........+
T Consensus 283 -----------------------------~~----~g----~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 283 -----------------------------IE----AG----VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp -----------------------------HH----TT----CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred -----------------------------HH----cC----HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 11 234445566778899999999999999987665443333
Q ss_pred -HHHHHHHHhcCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 417 -EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 -~~i~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
..+++.+...+.++ ++.+|..|+++|+.++.........-....++|.|+..+.+ +++.++..|+++|.+++....+
T Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 326 DHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT-AEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCH
T ss_pred HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCH
Confidence 35778888888888 99999999999999997543333222345789999999988 7889999999999999987544
Q ss_pred ccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 495 EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 495 ~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
+. ..++ ..+++.|..++.+.++.++..++.+++.+....+.
T Consensus 405 ~~-~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 405 DQ-IKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 2333 35688899999999999999999999999876544
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.64 E-value=4.2e-13 Score=163.94 Aligned_cols=512 Identities=13% Similarity=0.056 Sum_probs=311.7
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC
Q 001307 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1103)
Q Consensus 59 ~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1103)
+.+++-|. +++..+|..++..++.. .. ..........|++.|.+ .+..+|..++.+++.++...-..
T Consensus 118 ~~lv~~L~-~~~~~~r~~a~~~l~~~-~~----------~~i~~g~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~~ 184 (780)
T 2z6g_A 118 PTNVQRLA-EPSQMLKHAVVNLINYQ-DD----------AELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASR 184 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhc-CccHHHHHHHHHHHHhh-hH----------HHHHhCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChhH
Confidence 55666665 45677888777777642 11 12234455667777776 58899999999999998743110
Q ss_pred ---CCcchhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001307 139 ---NGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1103)
Q Consensus 139 ---~~w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1103)
..-+..++.|.+.+.++ ++..|..|+.+|..++......-.-.-...++.+...++++ +..+|..|+.+|.++..
T Consensus 185 ~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 12357899999888754 88899999999998876422110001124778899999997 89999999999999987
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhcCCCcchHHHHH
Q 001307 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHL 293 (1103)
Q Consensus 215 ~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~ 293 (1103)
.... ....+.. ...+..+...+.+++..++..++.++..++......-.... ...++.++.++... ..+..+..
T Consensus 264 ~~~~--~~~~v~~--~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~~ 338 (780)
T 2z6g_A 264 HQEG--AKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWT 338 (780)
T ss_dssp HSTT--HHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC-CCHHHHHH
T ss_pred CChh--hHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-CHHHHHHH
Confidence 6422 1111210 13444555566677888888888888877754332211111 13455666666543 34556667
Q ss_pred HHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC
Q 001307 294 AIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1103)
Q Consensus 294 a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1103)
+...+..++.. +.. + ...+ ...++.++..+...+ ......+..++..++...+..
T Consensus 339 a~~aL~~Ls~~----~~~-~--~~i~~~g~l~~Ll~lL~~~~-----------------~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 339 TSRVLKVLSVC----SSN-K--PAIVEAGGMQALGLHLTDPS-----------------QRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HHHHHHHHHTS----TTH-H--HHHHHTTHHHHHGGGTTCSC-----------------HHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhhcC----hHH-H--HHHHHhchHHHHHHHHcCCc-----------------hHHHHHHHHHHHHHhccchhh
Confidence 77777777753 111 0 1111 235666666554321 113344566777777655433
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCC-CC-hhHHHHHHHHHHHhhhhh
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRD-PH-PRVRWAAINAIGQLSTDL 449 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d-~~-~~vr~~a~~~L~~l~~~~ 449 (1103)
.....+++.+...+.+.+|..|..|+.+|+.++.+..+...... ...++.++..+.+ .+ ..||..|+++|+.++...
T Consensus 395 ~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 34566888888899999999999999999999887654322222 1356666666654 23 489999999999998643
Q ss_pred chh--HH-hhhhhhhHHHHHhhccCCCC-cchHHHHHHHHHHHHhcCCcccccCch-HHHHHHHHHHhhcCC--------
Q 001307 450 GPD--LQ-NQFHPQVLPALAGAMDDFQN-PRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGK-------- 516 (1103)
Q Consensus 450 ~~~--~~-~~~~~~il~~l~~~l~~~~~-~~v~~~a~~al~~l~~~~~~~~l~~~l-~~ll~~L~~~l~~~~-------- 516 (1103)
+.. .+ .-.....+|.|++.+.+ ++ +.++..|+++|.+++..-. . ..... ..+++.|+.++.+.+
T Consensus 475 ~~~~~~~~~v~~~~~l~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~~~-~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 475 QDAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLALCPA-N-HAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHHSSHH-H-HHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHHHhcCHH-H-HHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 221 00 01124578999999988 55 4899999999999985321 1 11111 124455555554322
Q ss_pred --------------hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChh
Q 001307 517 --------------QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (1103)
Q Consensus 517 --------------~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1103)
..++..++.+++.++........-.-...+|.|...+.. ....++..|..+++.++.. .
T Consensus 552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~---~ 624 (780)
T 2z6g_A 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS----PIENIQRVAAGVLCELAQD---K 624 (780)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC----SCHHHHHHHHHHHHHHHTS---H
T ss_pred hccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcC---H
Confidence 346677788888776432111100113567888887754 2345777788888877521 2
Q ss_pred hhhhhHHH--HHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcC
Q 001307 583 KFRDDAKQ--VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ 626 (1103)
Q Consensus 583 ~~~~~~~~--i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 626 (1103)
.....+.+ .++.+.++..+ .+..++..+..++.+++..-+.
T Consensus 625 ~~~~~i~~~g~i~~L~~Ll~~---~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 625 EAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCChH
Confidence 22222222 35556665552 3456888999999998876553
No 41
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.61 E-value=8.8e-10 Score=135.52 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=153.6
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-----CcchHHHHHHHHHHHHhcCCcccccCchHH
Q 001307 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-----NPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1103)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-----~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (1103)
..++..+.+++|++|.++..+.+.....+++.+++.|+..... + .+.++...|+.++.+.+.+... ..|++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~-~~~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~ 566 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ-KRGKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKT 566 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc-ccccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHH
Confidence 3568999999999999998777655468899999999987755 3 3456777889999988877543 468999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh--------HhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHH
Q 001307 504 IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF--------QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1103)
Q Consensus 504 ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~--------~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i 575 (1103)
++..++..+.+.++.+++.|+.++..++..++..| .||++.++..+.....+...+ -....++++|.+
T Consensus 567 vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~----~~~~lyeav~~v 642 (1073)
T 3gjx_A 567 VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQ----QVHTFYEAVGYM 642 (1073)
T ss_dssp HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 358888887777775543222 233458999999
Q ss_pred HHhhChhh-hhhhHHHHHHHHHHHhcC---------CCCCCC---chhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHh
Q 001307 576 GMAVGKDK-FRDDAKQVMEVLMSLQGS---------QMETDD---PTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1103)
Q Consensus 576 ~~~~~~~~-~~~~~~~i~~~l~~l~~~---------~~~~~~---~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~ 642 (1103)
+.++|.+. -..++..+|+.....++. ..-.|. .....++++...+|..+|..|.|++..+.+.+++.
T Consensus 643 i~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~ 722 (1073)
T 3gjx_A 643 IGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV 722 (1073)
T ss_dssp HTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99998554 344556565544432211 000111 12335667778889999999999999988877765
Q ss_pred c
Q 001307 643 A 643 (1103)
Q Consensus 643 ~ 643 (1103)
.
T Consensus 723 y 723 (1073)
T 3gjx_A 723 Y 723 (1073)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.61 E-value=3.7e-13 Score=164.43 Aligned_cols=414 Identities=11% Similarity=0.080 Sum_probs=258.4
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch-hhHHH
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKH 184 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~-~~~~~ 184 (1103)
..+++.|.+ ++..+|..++..+..+.+..+. ...+|.|..++.++++.+|+.|+.+|+.++........ ...+.
T Consensus 118 ~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 118 PTNVQRLAE-PSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp --------C-CSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 467788886 5778888888888766443332 34567777777788999999999999999875432211 11245
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001307 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1103)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1103)
+++.+...|.+..+..+|..|+.+|..+...-. ....+.. ...++.|...++++++.++..++.+|..++...+.
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~---~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE---GLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH---HHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch---hHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 677777777643478999999999999664311 1111111 13566666777788999999999999999976544
Q ss_pred HHHHhH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001307 265 FLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1103)
Q Consensus 265 ~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~ 343 (1103)
.-.... ...++.++.++.. .+..++..+..++..++.. .+.....+ .-...++.++..+...+.
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~---~~e~~~~i--~~~~~i~~Lv~lL~~~~~-------- 332 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYG---NQESKLII--LASGGPQALVNIMRTYTY-------- 332 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTT---CHHHHHHH--HTTTHHHHHHHHHTTCCC--------
T ss_pred hHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcC---ChHHHHHH--HHcCCHHHHHHHHhcCCH--------
Confidence 333222 3567778887754 3567888888877766641 11110000 001245555655543211
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCC-Ccc-hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001307 344 TEDEDAGESSNYSVGQECLDRLAIALGG-NTI-VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1103)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1103)
......+..++..++..-.. ..+ -..+++.+..++.+.+...+..++.++..++...... .....+++
T Consensus 333 --------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~ 402 (780)
T 2z6g_A 333 --------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLG 402 (780)
T ss_dssp --------HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHH
T ss_pred --------HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHH
Confidence 01122345556666532100 011 1124566777788888888989999999998765431 12457888
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCC-cchHHHHHHHHHHHHhcCCccc-ccC
Q 001307 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN-PRVQAHAASAVLNFSENCTPEI-LTP 499 (1103)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~~v~~~a~~al~~l~~~~~~~~-l~~ 499 (1103)
.+...++++++.+|..|+++|+.++..-......-.-...++.|++.+.+.++ ..++..|+.+|.+++...+... ...
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999987532222111224578888888865123 3899999999999975433210 000
Q ss_pred --chHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhhhhhHhhH-hhhhHHHHHHHhh
Q 001307 500 --YLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVN 555 (1103)
Q Consensus 500 --~l~~ll~~L~~~l~~~~~-~v~~~al~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~ 555 (1103)
.-...++.|..++.+++. .++..++.+|+.++..... ..... ..++|.|...+..
T Consensus 483 ~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVR 541 (780)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHh
Confidence 012236778888887764 8999999999999863322 22222 3577888887754
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.55 E-value=7.8e-12 Score=148.57 Aligned_cols=449 Identities=13% Similarity=0.122 Sum_probs=274.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
..+.+++..+.|+|-+.|+-+.-++..+.+.+|+.. ....+.+. +++++.+|.+|...|.+... +
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~-~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----------~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH-LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-----------S 137 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----------H
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----------H
Confidence 356788888899999999999999988887677642 22333333 37899999999999988642 4
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh--
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-- 176 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~-- 176 (1103)
+..+.+...+.+.+.+ +++.||+.++.+++.+.+. .| ..-+.+++.+..++.++++.++..|+.++..+++..++
T Consensus 138 ~~~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~-~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 138 EMCRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRK-VP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHH-CG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHH-Ch-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 5556677778888887 7999999999999999884 33 34456778888888999999999999999999876543
Q ss_pred -hchhhHHHHHHHHHHhhCC----------CCChHHHHHHHHHHHHHHHhcCCcchHhHH--------------------
Q 001307 177 -TLTPHLKHLHAVFLNCLTN----------SNNPDVKIAALNAVINFIQCLTSSADRDRF-------------------- 225 (1103)
Q Consensus 177 -~l~~~~~~l~~~l~~~l~~----------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-------------------- 225 (1103)
.+...++.++..+...... ..++-.+...+++++.+....+. ....+
T Consensus 215 ~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~--~~~~~~~~L~~l~~~~~~~~~~~~a 292 (618)
T 1w63_A 215 AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD--SSEAMNDILAQVATNTETSKNVGNA 292 (618)
T ss_dssp HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHHHTSCCSSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHhccccccchHHH
Confidence 2333444454444433210 01455556666666554432100 00000
Q ss_pred ---------------HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHH
Q 001307 226 ---------------QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGT 290 (1103)
Q Consensus 226 ---------------~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 290 (1103)
..+.....+.+...+.++++.++..++..+..++...|..+.++...++..+ . +.+..+
T Consensus 293 V~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l----~--d~d~~I 366 (618)
T 1w63_A 293 ILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL----K--DLDVSI 366 (618)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG----G--SSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc----c--CCChhH
Confidence 0111234555666677778888888888888888888877777766665543 2 456889
Q ss_pred HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC
Q 001307 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1103)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1103)
|..|++.+..++.. .. +..+++.+...+.+.+ ......+..++..++..++
T Consensus 367 r~~alelL~~l~~~--------~n----v~~iv~eL~~~l~~~d-----------------~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 367 KRRAMELSFALVNG--------NN----IRGMMKELLYFLDSCE-----------------PEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp HHHHHHHHHHHCCS--------SS----THHHHHHHHHHHHHCC-----------------HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHccc--------cc----HHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHHHHhC
Confidence 99999988888762 11 2334444444443211 1234567778888887765
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhc
Q 001307 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
+. ....++.+.+.+.+.....+..++..+..+....++.-...+..++..+.... ...+ +...++|++|.++..+.
T Consensus 418 ~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~-~~~~-~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 418 PS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY-SQQP-LVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp CC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC-SCSH-HHHHHHHHHHHHHHHHT
T ss_pred cc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc-ccHH-HHHHHHHHHhhhHHHhc
Confidence 22 23334444444443322333334445555544333211122333333333211 1234 44578999999997653
Q ss_pred hh-HH-----hhhhhhhHHHHHhhcc--CCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001307 451 PD-LQ-----NQFHPQVLPALAGAMD--DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1103)
Q Consensus 451 ~~-~~-----~~~~~~il~~l~~~l~--~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~ 522 (1103)
.. .. ...-..+++.+...++ . .++.+|..+..++..+....+. . .+.+...|-....+.+.++|..
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~vr~~~lta~~Kl~~~~~~--~---~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 494 SGQCEEEEPIQVTEDEVLDILESVLISNM-STSVTRGYALTAIMKLSTRFTC--T---VNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp TCCCSSSCCCCCCHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHHHTTCSS--C---HHHHHHHHHHHTTCSCHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhCcc--h---HHHHHHHHHHhcCCCCHHHHHH
Confidence 20 00 0001122333333332 3 5789999999999999876642 1 2333333334456778899999
Q ss_pred HHHHHHHHHH
Q 001307 523 ALTALASVAD 532 (1103)
Q Consensus 523 al~al~~l~~ 532 (1103)
|...+..+..
T Consensus 568 A~~y~~ll~~ 577 (618)
T 1w63_A 568 AVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9988777654
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.54 E-value=1.4e-11 Score=148.46 Aligned_cols=477 Identities=13% Similarity=0.056 Sum_probs=298.0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC---CCcchhHHHHHHhhcCC-CHhHHHHHHHHHHHhhhhhhhhchh
Q 001307 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~---~~w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
...|++.|.+ .++.+|..++.+++.++...-.. ..-+..++.+.+.+.++ ++..|..++.+|..++........-
T Consensus 16 i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4466777776 58899999999999998743110 01246788899988765 7889999999999887653211100
Q ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001307 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1103)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1103)
.-...++.+...++++ ++.+|..|+.+|.++....+. ....+. -...++.+...+.++++.++..++.+|..++.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~--~~~~v~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEG--AKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTT--HHHHHH--HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcch--hHHHHH--HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 1124678888899997 899999999999999876421 111111 01344555556667788888888889988886
Q ss_pred cchHHHHHhH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcc
Q 001307 261 TEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPL 338 (1103)
Q Consensus 261 ~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~ 338 (1103)
..+..-.... ...++.++.++... ..+.++..+...+..++.. +.... .++ ...++.++..+...
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~----~~~~~---~l~~~g~l~~L~~ll~~~----- 236 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVC----SSNKP---AIVEAGGMQALGLHLTDP----- 236 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTC----TTHHH---HHHHTTHHHHHHTTTTCS-----
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC----cccHH---HHHHCCCHHHHHHHHhcC-----
Confidence 4332211111 14566666776543 3466777888888877752 21111 111 23566666655332
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001307 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 417 (1103)
Q Consensus 339 w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~- 417 (1103)
.......+..+|..++...+.......+++.+..++.+.++..|..+..+|+.++.+..+.......
T Consensus 237 ------------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~ 304 (644)
T 2z6h_A 237 ------------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304 (644)
T ss_dssp ------------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 1123445667777777654433445567888888899999999999999999998865442222221
Q ss_pred HHHHHHHhcCCCC--ChhHHHHHHHHHHHhhhhhch--hHHh-hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcC
Q 001307 418 QVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGP--DLQN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1103)
Q Consensus 418 ~i~~~l~~~l~d~--~~~vr~~a~~~L~~l~~~~~~--~~~~-~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1103)
..++.++..+.+. ++.+|..|+++|+.++...+. ..+. -.....+|.+.+.|.+..++.++..|+++|.+++..-
T Consensus 305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 3567777777652 379999999999999854322 1111 1124678999999998224689999999999998642
Q ss_pred CcccccCc-hHHHHHHHHHHhhcC----------------------ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHH
Q 001307 493 TPEILTPY-LDGIVSKLLVLLQNG----------------------KQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1103)
Q Consensus 493 ~~~~l~~~-l~~ll~~L~~~l~~~----------------------~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l 549 (1103)
.. .... -..+++.|..++.+. +..++..++.++..++........-.-...+|.|
T Consensus 385 ~~--~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 462 (644)
T 2z6h_A 385 AN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462 (644)
T ss_dssp GG--HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred HH--HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHH
Confidence 21 1111 123455555555542 2456677777887777543221111124578888
Q ss_pred HHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHH--HHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHh
Q 001307 550 KAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ--VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (1103)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~--i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1103)
...+.. ....++..|..+++.++.. ......+.+ .++.+..+..+ .+..++.++..++.+++..-
T Consensus 463 v~lL~~----~~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~---~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 463 VQLLYS----PIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHTTC----SCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHcC----CCHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHHHcC---CCHHHHHHHHHHHHHHhccC
Confidence 888753 2234677788888877632 112211111 24455555442 34558888888888875543
No 45
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.52 E-value=9.2e-12 Score=149.94 Aligned_cols=469 Identities=12% Similarity=0.082 Sum_probs=301.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCcc
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w 93 (1103)
..+..++..+.++|..+|..|...|..+....+ .+.++.|+..+.++.++.+|..|+..|+++...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~------ 87 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------ 87 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC------
Confidence 456666666778899999999999998876322 145688888888777899999999999875433
Q ss_pred ccCCHHHHH-----HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-C--cchhHHHHHHhhcCCCHhHHHHHHH
Q 001307 94 PRLSLHTQS-----SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-G--WPELLPFMFQCVSSDSVKLQESAFL 165 (1103)
Q Consensus 94 ~~l~~~~~~-----~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~-~--w~~ll~~l~~~~~s~~~~~r~~al~ 165 (1103)
.+.+. .....|++.|.+ ++..+|..++.++..++...-+.. . -...+|.|.++++++++..+..++.
T Consensus 88 ----~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 88 ----REGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp ----HHHHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred ----hhhHHHHHHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 12222 234567777776 588999999999999987531100 0 1467899999999999888888888
Q ss_pred HHHHhhhhhhhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCC
Q 001307 166 IFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN 244 (1103)
Q Consensus 166 ~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~ 244 (1103)
+|..++...++.-.. .-...++.+...+.+.....++..++.++..+...- .....+.. ...++.+...+.+++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~---~~~~~l~~--~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE--AGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT---THHHHHHH--TTHHHHHHTTTTCSC
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc---ccHHHHHH--CCCHHHHHHHHhcCC
Confidence 898888532221000 112346677777777645678888888888876421 11221111 124455555666778
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001307 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1103)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1103)
..++..++.+|..++...+.. .....+++.++.++.. .+.++|..+...+..++.. .+...... .-...++
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~--~d~~v~~~a~~aL~~L~~~---~~~~~~~v--~~~g~v~ 308 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCN---NYKNKMMV--CQVGGIE 308 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT---CHHHHHHH--HHTTHHH
T ss_pred HHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcC---CHHHHHHH--HHcCCHH
Confidence 899999999999998755332 1234667777777753 4688999999999999873 12111100 1122556
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCc-----c-hHHHHHHHHHhhcCC-ChHHHHHH
Q 001307 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT-----I-VPVASEQLPAYLAAP-EWQKHHAA 397 (1103)
Q Consensus 325 ~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~-----~-~~~l~~~l~~~l~~~-~~~~r~aa 397 (1103)
.++..+....+. ......+..+|..++...+... + ....++.+.+.+.+. +|..|..+
T Consensus 309 ~Lv~lL~~~~~~---------------~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 309 ALVRTVLRAGDR---------------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp HHHHHHHHHTTC---------------HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHccCCc---------------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 666655432110 1133445566666643222100 1 123566777778776 48999999
Q ss_pred HHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCC----------------------ChhHHHHHHHHHHHhhhhhchhHH
Q 001307 398 LIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDP----------------------HPRVRWAAINAIGQLSTDLGPDLQ 454 (1103)
Q Consensus 398 l~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~----------------------~~~vr~~a~~~L~~l~~~~~~~~~ 454 (1103)
+.+++.++.+.... .... ..+++.+...+.+. +..++..++.+|..++.......
T Consensus 374 ~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~- 451 (644)
T 2z6h_A 374 VGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI- 451 (644)
T ss_dssp HHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHH-
T ss_pred HHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHH-
Confidence 99999998653321 1111 12444444444432 34566677777777775431111
Q ss_pred hhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchH--HHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~--~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
.-.-...++.+++.+.+ +++.++..++.+|.++... ++ ....+. ..++.|..++.++++.+|..|..+++.++.
T Consensus 452 ~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 11134688999999998 8899999999999998753 11 111111 135678888899999999999999999987
Q ss_pred hhhh
Q 001307 533 SSQE 536 (1103)
Q Consensus 533 ~~~~ 536 (1103)
..+.
T Consensus 528 ~~~~ 531 (644)
T 2z6h_A 528 DKPQ 531 (644)
T ss_dssp TSCH
T ss_pred cCcH
Confidence 6543
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.51 E-value=1.4e-11 Score=144.15 Aligned_cols=367 Identities=16% Similarity=0.185 Sum_probs=245.0
Q ss_pred cchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh-hhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 141 w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~-~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
....++.+.+.+.+++...+..|+..+..+...-. +.+.. .-..++|.|...|....++.++..|+.+|..++..-.
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~- 152 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS- 152 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-
Confidence 34568889999999999888888888887654321 11111 1234778889999765478999999999999986421
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCc---chHHHHHH
Q 001307 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESL---EEGTRHLA 294 (1103)
Q Consensus 219 ~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~---~~~~r~~a 294 (1103)
.....+.. ...++.|..++.+++++++..++.+|..++...+..-...+. ..++.++.++...+. ...+...+
T Consensus 153 -~~~~~vv~--~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 153 -EQTKAVVD--GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp -HHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH
T ss_pred -HHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHH
Confidence 11111110 124445556677899999999999999998765432221111 345666676654332 22345566
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--C
Q 001307 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--N 372 (1103)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~--~ 372 (1103)
...+..++.... + ......+..++|.+...+...+ ......+..+|..++..-.. .
T Consensus 230 ~~~L~nl~~~~~--~---~~~~~~~~~~lp~L~~LL~~~~-----------------~~v~~~a~~aL~~l~~~~~~~~~ 287 (529)
T 3tpo_A 230 TWTLSNLCRNKN--P---APPLDAVEQILPTLVRLLHHND-----------------PEVLADSCWAISYLTDGPNERIE 287 (529)
T ss_dssp HHHHHHHHCCCT--T---CCCHHHHHHHHHHHHHHTTSSC-----------------HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHhccc--c---hhhHHHHhhHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHhhhhhhhhHH
Confidence 677777776321 1 1112345678888888765321 11233455666666532110 0
Q ss_pred c-chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhc
Q 001307 373 T-IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 373 ~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
. ....+++.+..++.+.++..+..++.+++.++.+........+. ..++.+...+.++++.+|..|+|+|+.++..-.
T Consensus 288 ~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~ 367 (529)
T 3tpo_A 288 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 367 (529)
T ss_dssp HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH
Confidence 0 01124566667888999999999999999998776543322222 467788888999999999999999999987644
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001307 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALA 528 (1103)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~ 528 (1103)
.....-.-..++|.++..+.+ ++..++..|+++|.+++.....+.+ .++ ...++.|+.++.+.++.++..++.+|.
T Consensus 368 ~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~-~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 368 DQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQI-VYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 445 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHH-HHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 433222345689999999998 8899999999999999987654422 222 235778889999999999999999999
Q ss_pred HHHHhhh
Q 001307 529 SVADSSQ 535 (1103)
Q Consensus 529 ~l~~~~~ 535 (1103)
.+.....
T Consensus 446 nil~~~~ 452 (529)
T 3tpo_A 446 NIFQAAE 452 (529)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 9876543
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.50 E-value=1.4e-11 Score=143.13 Aligned_cols=361 Identities=16% Similarity=0.201 Sum_probs=242.1
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh-hhchhhH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~-~~l~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1103)
++.+.+.++|++...+..|...++.+...-. +.+...+ ..++|.|.+.|....++.++..|+++|++++..-+ ...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~--e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS--EQT 136 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH--HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH--HHH
Confidence 7888999999999998889888887764321 1111111 23688999999865478999999999999986421 111
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcc---hHHHHHHHHHH
Q 001307 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLE---EGTRHLAIEFV 298 (1103)
Q Consensus 223 ~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~---~~~r~~a~~~l 298 (1103)
..+.+ ...++.|...+.+++++++..++.+|..++...+..-..... ..++.++.++...+.+ ..+...+...+
T Consensus 137 ~~vv~--~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVD--GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 11111 023445556667899999999999999998765432211111 3456666666543322 23455666777
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc----
Q 001307 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI---- 374 (1103)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~---- 374 (1103)
..++..+. + ......+..++|.+...+...+ ......+..+|..++..- +..
T Consensus 215 ~nl~~~~~--~---~~~~~~~~~~lp~L~~LL~~~~-----------------~~v~~~A~~aL~~L~~~~--~~~~~~i 270 (510)
T 3ul1_B 215 SNLCRNKN--P---APPLDAVEQILPTLVRLLHHND-----------------PEVLADSCWAISYLTDGP--NERIEMV 270 (510)
T ss_dssp HHHHCCCS--S---CCCHHHHHHHHHHHHHHTTCSC-----------------HHHHHHHHHHHHHHTSSC--HHHHHHH
T ss_pred HHHhhccc--c---hhHHHHHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHHhhch--hhhHHHH
Confidence 77776321 1 1112345678888888764321 113334556666665321 111
Q ss_pred -hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchh
Q 001307 375 -VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1103)
Q Consensus 375 -~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (1103)
-..+++.+.+++.+.++..+..++.+++.++.+........+. ..++.+...+.++++.+|..|+|+|+.++..-...
T Consensus 271 ~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~ 350 (510)
T 3ul1_B 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 350 (510)
T ss_dssp HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHH
Confidence 1124566677888999999999999999998776543322222 46677788899999999999999999998755443
Q ss_pred HHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001307 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1103)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l 530 (1103)
...-.-..++|.++..+.+ ++..+|..|+++|.+++.....+.+ .++ ...++.|..++.+.++.++..++.++..+
T Consensus 351 ~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~-~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 351 IQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQI-VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHH-HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3222345789999999998 8899999999999999987654422 122 24577888899999999999999999998
Q ss_pred HHhhh
Q 001307 531 ADSSQ 535 (1103)
Q Consensus 531 ~~~~~ 535 (1103)
.....
T Consensus 429 l~~~~ 433 (510)
T 3ul1_B 429 FQAAE 433 (510)
T ss_dssp HHHHH
T ss_pred HHHhH
Confidence 86543
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=3.4e-12 Score=150.93 Aligned_cols=462 Identities=13% Similarity=0.076 Sum_probs=286.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCcc
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w 93 (1103)
..+..++.-+.++|..+|..|-..|..+...++ .+.++.|...+.++.++.+|..|+..|+++...
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~------ 90 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------ 90 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS------
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC------
Confidence 356666666778899999999999988765211 135688888887777899999999999986433
Q ss_pred ccCCHHHHH-----HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-C--cchhHHHHHHhhcCCCHhHHHHHHH
Q 001307 94 PRLSLHTQS-----SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-G--WPELLPFMFQCVSSDSVKLQESAFL 165 (1103)
Q Consensus 94 ~~l~~~~~~-----~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~-~--w~~ll~~l~~~~~s~~~~~r~~al~ 165 (1103)
++.+. .....|++.|.+ +++.++..++.++..++...-... . -...+|.+.+++.++++..+..+..
T Consensus 91 ----~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 165 (529)
T 1jdh_A 91 ----REGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165 (529)
T ss_dssp ----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred ----chhHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 22222 234467777776 588999999999999987521100 0 1467899999999999999999888
Q ss_pred HHHHhhhhhhhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCC
Q 001307 166 IFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN 244 (1103)
Q Consensus 166 ~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~ 244 (1103)
++..++...++.-.. .-...++.+...+.+.....++..+..++..+...- .....+.. ...++.+...+.+++
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~--~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE--AGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST---THHHHHHH--TTHHHHHHTTTTSSC
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc---ccHHHHHH--CCCHHHHHHHHhCCC
Confidence 888887532221000 011235556666665535666777778877776421 11111110 134555555666778
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001307 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1103)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1103)
++++..++.+|..++...+.. .....+++.++.++. +.++++|..++..+..++.. .+.....+ .-...++
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~---~~~~~~~~--~~~~~v~ 311 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCN---NYKNKMMV--CQVGGIE 311 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTT---CHHHHHHH--HHTTHHH
T ss_pred hHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcC---CHHHHHHH--HHcCChH
Confidence 899999999999998754332 123456777777774 35788999999999988763 22111110 0112455
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC-----cch-HHHHHHHHHhhcCCC-hHHHHHH
Q 001307 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-----TIV-PVASEQLPAYLAAPE-WQKHHAA 397 (1103)
Q Consensus 325 ~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~-----~~~-~~l~~~l~~~l~~~~-~~~r~aa 397 (1103)
.++..+....+. ......+..+|..++...+.. .+. ...++.+...+.+++ |..|..+
T Consensus 312 ~L~~ll~~~~~~---------------~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 312 ALVRTVLRAGDR---------------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp HHHHHHHHHTTC---------------HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHccCCH---------------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 666655432110 112334555565554322110 010 113456666777665 8999999
Q ss_pred HHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHH----------------------hhhhhchhHH
Q 001307 398 LIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQ----------------------LSTDLGPDLQ 454 (1103)
Q Consensus 398 l~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~L~~----------------------l~~~~~~~~~ 454 (1103)
+.+++.++.+.... .... ..+++.+...+.++++.+|..|+|++++ ++... ...
T Consensus 377 ~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 377 VGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 99999998653321 1122 2467777777777778888777776654 32211 100
Q ss_pred h-hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001307 455 N-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1103)
Q Consensus 455 ~-~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l 530 (1103)
. -.-...++.++..+.+ +++.++..++.+|.++... +. ....+ ...++.|..++.++++.++..+..++..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~-~~~~v~~~a~~~l~~l~~~--~~-~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS--HH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcC-CchHHHHHHHHHHHHHhcC--HH-HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 0 0123577899999999 8899999999999998743 11 11111 12357788888999999999999988765
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.48 E-value=4.4e-11 Score=141.31 Aligned_cols=473 Identities=12% Similarity=0.052 Sum_probs=285.4
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC---CcchhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 103 SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 103 ~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
.....|++.|.+ .++.+|..++.+++.++...-... .-+..++.+.+.+.+ +++..|..++..|..++.......
T Consensus 17 ~~i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 17 RAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 345567777776 589999999999999986431100 124678888888865 488899999999999876522110
Q ss_pred hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001307 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1103)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1103)
.-.-...++.+...++++ ++.++..|+.++..+....+. ....+. -...++.+...+.++++.++..+..+|..+
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~--~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEG--AKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTT--HHHHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcc--hHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 001124778888999997 899999999999999875322 111111 023445555566778888888888888888
Q ss_pred HccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCC
Q 001307 259 AGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDD 336 (1103)
Q Consensus 259 ~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~ 336 (1103)
+...+..-..... ..++.++.++... ..+..+..+...+..++.. +.... .++ ...++.++..+...
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~----~~~~~---~~~~~g~~~~L~~ll~~~--- 239 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVC----SSNKP---AIVEAGGMQALGLHLTDP--- 239 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS----TTHHH---HHHHTTHHHHHHTTTTSS---
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhC-ChHHHHHHHHHHHHHHhcC----cccHH---HHHHCCCHHHHHHHHhCC---
Confidence 7644332211111 3455555555433 3455666777777777652 21111 111 23566666655322
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH
Q 001307 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1103)
Q Consensus 337 ~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1103)
+......+..++..++...+.......+++.+.+++.+.++..|..++.+|+.++...++......
T Consensus 240 --------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 240 --------------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 111334566777777765543444556788888888999999999999999999876544332222
Q ss_pred H-HHHHHHHhcCCC--CChhHHHHHHHHHHHhhhhhchh--HHhh-hhhhhHHHHHhhccCCCC-cchHHHHHHHHHHHH
Q 001307 417 E-QVLSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPD--LQNQ-FHPQVLPALAGAMDDFQN-PRVQAHAASAVLNFS 489 (1103)
Q Consensus 417 ~-~i~~~l~~~l~d--~~~~vr~~a~~~L~~l~~~~~~~--~~~~-~~~~il~~l~~~l~~~~~-~~v~~~a~~al~~l~ 489 (1103)
. ..++.++..+.+ .++.+|..|+.+|+.++...+.. .+.. .....+|.+++.+.+ ++ +.++..++++|.+++
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc-ccchHHHHHHHHHHHHHh
Confidence 2 356666666654 45899999999999998643221 1111 123578999999998 55 589999999999998
Q ss_pred hcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHH----------------------HHHHHhhhhhhHhh-Hhhh
Q 001307 490 ENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTAL----------------------ASVADSSQEHFQKY-YDAV 545 (1103)
Q Consensus 490 ~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~v~~~al~al----------------------~~l~~~~~~~~~~~-~~~i 545 (1103)
..-.. ..... ..+++.|+..+.+.+..+|..+..++ ..++.... .-... -...
T Consensus 385 ~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~-~~~~l~~~~~ 461 (529)
T 1jdh_A 385 LCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNT 461 (529)
T ss_dssp TSGGG--HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH-HHHHHHHTTC
T ss_pred cChhh--hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCch-HHHHHhccCC
Confidence 64221 11111 24567777777766666666554444 33332211 00001 1245
Q ss_pred hHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHH--HHHHHHHHHhcCCCCCCCchhhHHHHHHHHH
Q 001307 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK--QVMEVLMSLQGSQMETDDPTTSYMLQAWARL 620 (1103)
Q Consensus 546 ~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~--~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 620 (1103)
++.|...+.. ....++..+..+++.++.. ......+. ..++.+..+..+ .+..++..+..++.++
T Consensus 462 v~~l~~ll~~----~~~~v~~~a~~~l~~l~~~---~~~~~~i~~~~~~~~L~~l~~~---~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 462 IPLFVQLLYS----PIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHGGGC----SCHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcC----CchHHHHHHHHHHHHHhcC---HHHHHHHHHcCChHHHHHHhcC---CCHHHHHHHHHHHHhc
Confidence 6777776643 2345677777787776521 11111111 124455555542 3445777777777665
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.47 E-value=4.1e-11 Score=140.27 Aligned_cols=361 Identities=13% Similarity=0.122 Sum_probs=241.3
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH-HhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHccch
Q 001307 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF-QDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEP 263 (1103)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~ip~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~ 263 (1103)
++-+.+.+.++ +...+..|+..+..++..-..+...... .+.+|.+++ ++. ++++.++..++.+|..++...+
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~----lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS----FLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHH----HHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHH----HHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 34556677786 8999999999999887543221111111 234555554 443 4568889999999999998765
Q ss_pred HHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccc
Q 001307 264 RFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWH 340 (1103)
Q Consensus 264 ~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~ 340 (1103)
......+. ..++.++.++.. .+.+++..|+..|..++.. .+.. + ..+ ...++.++..+...+...
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s--~~~~v~e~A~~aL~nLa~~---~~~~-r---~~i~~~g~i~~Ll~lL~~~~~~~--- 220 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGA---GSAF-R---DLVIKHGAIDPLLALLAVPDLST--- 220 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT---CHHH-H---HHHHHTTCHHHHHHTTCSSCGGG---
T ss_pred HHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcc---CHHH-H---HHHHHcCCcHHHHHHHhccchhH---
Confidence 54433333 467777777754 4689999999999999862 2211 1 111 235666776665432100
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCc---chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH-
Q 001307 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNT---IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL- 416 (1103)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l- 416 (1103)
........+..++..++..-.+.. ....++|.+..++.+++...+..++.+|+.++.+..+......
T Consensus 221 ---------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 221 ---------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp ---------SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred ---------hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 000112234455555554322111 2345778888899999999999999999999987765433222
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
..+++.+...+.++++.++..++.+|+.++.........-.-...++.|...+.+ +++.++..|+++|.+++......
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~- 369 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQ- 369 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHH-
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHH-
Confidence 2467888888999999999999999999986543222112335678888899998 88999999999999998754321
Q ss_pred ccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHH
Q 001307 497 LTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1103)
Q Consensus 497 l~~~-l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1103)
.... -..+++.|+.++.+++..+|..|..+|+.++.........|+ ..+++.|..++... +..++..+++++.
T Consensus 370 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~----d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 370 IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----DTKIIQVILDAIS 445 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 1111 124778888999999999999999999999875444333333 35788888887542 3446777888888
Q ss_pred HHHHh
Q 001307 574 LVGMA 578 (1103)
Q Consensus 574 ~i~~~ 578 (1103)
.|...
T Consensus 446 nil~~ 450 (529)
T 3tpo_A 446 NIFQA 450 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.47 E-value=2.9e-11 Score=140.56 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=239.5
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH-HhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHccchH
Q 001307 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF-QDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEPR 264 (1103)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~ip~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~~ 264 (1103)
+-+.+.++++ +..++..|+..+..+...-.++...... .+.+|.++ +++. ++++.++..+..+|..++...+.
T Consensus 60 ~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV----~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV----SFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHH----HHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHH----HHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4456677886 9999999999999988643221111111 13345444 4554 45678889999999999976665
Q ss_pred HHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCccccc
Q 001307 265 FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHS 341 (1103)
Q Consensus 265 ~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~~ 341 (1103)
.....+. ..++.++.++.. .+.++|..|+..|..++.. .+.. + ..+ ...++.++..+...+...
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s--~~~~v~e~A~~aL~nLa~d---~~~~-r---~~v~~~G~i~~Ll~lL~~~~~~~---- 201 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGD---GSAF-R---DLVIKHGAIDPLLALLAVPDLST---- 201 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT---CHHH-H---HHHHHTTCHHHHHHHTCSSCGGG----
T ss_pred HHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhC---CHHH-H---HHHHHcCChHHHHHHHHhccchh----
Confidence 5444333 467777887754 5789999999999999862 2211 1 111 234666666665332100
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHHcCCCc---chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH-H
Q 001307 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNT---IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-E 417 (1103)
Q Consensus 342 ~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~ 417 (1103)
........+..++..++..-.+.. ....++|.+..++.+.+...+..++.+|+.++.+..+...... .
T Consensus 202 --------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 202 --------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp --------SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred --------hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 000112234455555554322111 2345778888899999999999999999999987665333222 2
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
.+++.+...+.++++.++..++.+|+.++.........-.-..+++.|...+.+ +++.+|..|+++|.+++...... .
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~-~ 351 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQ-I 351 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHH-H
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHH-H
Confidence 467888888999999999999999999986543222111234577788888888 88999999999999998654321 1
Q ss_pred cCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHH
Q 001307 498 TPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1103)
Q Consensus 498 ~~~-l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1103)
... -..+++.|+..+.+.+..+|..|..+|+.++.........|+ ..+++.|..++... +..++..+++++..
T Consensus 352 ~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~----d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----DTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----CHHHHHHHHHHHHH
Confidence 111 124778889999999999999999999999876544433333 35788888887542 33467778888888
Q ss_pred HHHh
Q 001307 575 VGMA 578 (1103)
Q Consensus 575 i~~~ 578 (1103)
|...
T Consensus 428 il~~ 431 (510)
T 3ul1_B 428 IFQA 431 (510)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.47 E-value=3.4e-10 Score=133.77 Aligned_cols=441 Identities=13% Similarity=0.118 Sum_probs=279.8
Q ss_pred cCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHH
Q 001307 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLP 146 (1103)
Q Consensus 67 ~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~ 146 (1103)
++++...|+++-+.+......+ ++..-.+-+.+.+-+.+ +++.+|-.+..+++.+... .-.+.++|
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~---------~e~~~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~~----e~~~~l~~ 149 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSN---------SELIRLINNAIKNDLAS-RNPTFMGLALHCIANVGSR----EMAEAFAG 149 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCC---------HHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCCH----HHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhhccCCH----HHHHHHHH
Confidence 3678899999999998876543 56556666777788886 7999999988888887442 24467888
Q ss_pred HHHHhh--cCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001307 147 FMFQCV--SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1103)
Q Consensus 147 ~l~~~~--~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1103)
.+.+++ .++++.+|..|+.++..+....++.+.. +.+++.+...|.|. ++.|+.+|+.++..+...- ...
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~-----~~~ 221 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKN-----PEE 221 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHC-----HHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhC-----hHH
Confidence 999999 8889999999999999999976665432 35667777888887 9999999999999987652 345
Q ss_pred HHhhHHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCC------
Q 001307 225 FQDLLPLMMRTLTESLNNG-------------NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES------ 285 (1103)
Q Consensus 225 ~~~~ip~ll~~l~~~l~~~-------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~------ 285 (1103)
|..++|.+++.+...+..+ ++..+...++.+..+...........+.+++..++..+.+..
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 7778888888888776532 566777778887777654333344444444444443321110
Q ss_pred -c--chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHH
Q 001307 286 -L--EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECL 362 (1103)
Q Consensus 286 -~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l 362 (1103)
. ...+...|..++..+. ..+++....+..+...+... +...+.++...+
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~-----------~~~~~~~~~~~~L~~~L~~~-----------------~~niry~aL~~l 353 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHD-----------SEPNLLVRACNQLGQFLQHR-----------------ETNLRYLALESM 353 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHSSCS-----------------CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHhcCC-----------------CcchHHHHHHHH
Confidence 0 1133333333333221 12345566666666655322 112344566666
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHH
Q 001307 363 DRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1103)
Q Consensus 363 ~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1103)
..++...+...++......+...+. +++...|.-++..+..++.. ..+..++..+...+.+.+...|..+..+
T Consensus 354 ~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 354 CTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVAEMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp HHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6665443211223333344555567 88899999999888887643 3566777777777777888899999999
Q ss_pred HHHhhhhhchhHHhhhhhh---------------------------------hHHHHHhhccCCCCc--chHHHHHHHHH
Q 001307 442 IGQLSTDLGPDLQNQFHPQ---------------------------------VLPALAGAMDDFQNP--RVQAHAASAVL 486 (1103)
Q Consensus 442 L~~l~~~~~~~~~~~~~~~---------------------------------il~~l~~~l~~~~~~--~v~~~a~~al~ 486 (1103)
++.++..+++.. ..|++. .+..++..+.+ +.. .+...++|.++
T Consensus 428 I~~la~k~~~~~-~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~-~~~~~~li~~~~wilG 505 (621)
T 2vgl_A 428 VAILAEKYAVDY-TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQA-PACHENLVKVGGYILG 505 (621)
T ss_dssp HHHHHHHHCSST-HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcC-ccchHHHHHHHHHHhc
Confidence 998887665332 111111 22233333443 211 23344557777
Q ss_pred HHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCC--cccc
Q 001307 487 NFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD--KSNR 562 (1103)
Q Consensus 487 ~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~ 562 (1103)
.+.+..... ++. ..++..+...+...+..+|..++.++..+....++ +.+.+..+++.... +.+.
T Consensus 506 Ey~~~~~~~---~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--------~~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 506 EFGNLIAGD---PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--------VKATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp HHTHHHHSS---TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHSSHHHHSCSSH
T ss_pred chHHHhccc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--------HHHHHHHHHHHHhcCCCCCH
Confidence 776543321 111 24556666666677889999999999988765432 33344444443332 3456
Q ss_pred hhhhHHHHHHHHHH
Q 001307 563 MLRAKSMECISLVG 576 (1103)
Q Consensus 563 ~lr~~a~~~l~~i~ 576 (1103)
.+|.+|.+....+.
T Consensus 575 evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 575 ELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 78999988877664
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.45 E-value=3.7e-10 Score=133.41 Aligned_cols=444 Identities=12% Similarity=0.105 Sum_probs=271.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1103)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1103)
.+.+++..+.|+|-+.|+-+.-++..+.+.+|+.. ....+.+.+ ++++.+|-+|...|.+... ++
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~-~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----------~e 142 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI-RLINNAIKNDLASRNPTFMGLALHCIANVGS-----------RE 142 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----------HH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-----------HH
Confidence 46778888889999999999999999888777653 333444432 8899999999999988632 56
Q ss_pred HHHHHHHHHHHHH--hhcchhhHHHHHHHHHHHHHhcccCCCCcc--hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q 001307 100 TQSSLKSMLLQSI--QLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1103)
Q Consensus 100 ~~~~ik~~ll~~l--~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 175 (1103)
..+.+...+.+.+ .+ +++.||+.++.++..+.+. .| +..+ ++++.+.+++.++++.++..|+.++..++...+
T Consensus 143 ~~~~l~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~-~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGD-TMDSVKQSAALCLLRLYRT-SP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHHHHTTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHH-CG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHh-Ch-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 6677777888888 54 7999999999999999984 33 2223 678888889999999999999999999988765
Q ss_pred hhchhhHHHHHHHHHHhhCCC-------------------------------CChHHHHHHHHHHHHHHHhcCC-c----
Q 001307 176 DTLTPHLKHLHAVFLNCLTNS-------------------------------NNPDVKIAALNAVINFIQCLTS-S---- 219 (1103)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~-------------------------------~~~~vr~~a~~~l~~l~~~~~~-~---- 219 (1103)
..+.+.++.++..+.+.+... .++..+......+..++....+ .
T Consensus 220 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKK 299 (621)
T ss_dssp HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccc
Confidence 554444555544444332210 1233333333333333321100 0
Q ss_pred -chHh-----------------HHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch--HHHHHhHHHHHHHHHH
Q 001307 220 -ADRD-----------------RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQ 279 (1103)
Q Consensus 220 -~~~~-----------------~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~ 279 (1103)
...+ ....++....+.+...+.+.++.++..++..+..++...+ ..+.++...++..+
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L-- 377 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL-- 377 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH--
T ss_pred ccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh--
Confidence 0000 0112333455566666666788888888888888887765 45566655555433
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHH
Q 001307 280 IAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQ 359 (1103)
Q Consensus 280 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~ 359 (1103)
. .+.+..+|..+++.+..++.. .-+..++..+...+.+.+ ......+.
T Consensus 378 --~-~d~d~~Ir~~aL~lL~~l~~~------------~Nv~~Iv~eL~~yl~~~d-----------------~~~~~~~v 425 (621)
T 2vgl_A 378 --K-TERDVSVRQRAVDLLYAMCDR------------SNAQQIVAEMLSYLETAD-----------------YSIREEIV 425 (621)
T ss_dssp --T-TCCCHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHHCC-----------------HHHHHHHH
T ss_pred --c-cCCCHhHHHHHHHHHHHHcCh------------hhHHHHHHHHHHHHHhcC-----------------HHHHHHHH
Confidence 2 145678899999988888752 234556666666554321 11233455
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCC--hhHHHH
Q 001307 360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRWA 437 (1103)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~--~~vr~~ 437 (1103)
..+..++..++++ ....+..+.+++....-.....+...+-.+....++ .-...+..+...+.++. ..+-..
T Consensus 426 ~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~----~~~~~~~~l~~~l~~~~~~~~li~~ 499 (621)
T 2vgl_A 426 LKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD----VQGYAAKTVFEALQAPACHENLVKV 499 (621)
T ss_dssp HHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS----CHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh----HHHHHHHHHHHHHcCccchHHHHHH
Confidence 6677777666522 223333333333321111222223333333332221 11123444555666653 356677
Q ss_pred HHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHH-Hhh-
Q 001307 438 AINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV-LLQ- 513 (1103)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~-~l~- 513 (1103)
++|++|.++..+... ++. ..++..+.+.+.. .++.||..+..++..+....+ + ....+..+++ ...
T Consensus 500 ~~wilGEy~~~~~~~---~~~~p~~~l~~l~~~~~~-~~~~v~~~~Lta~~Kl~~~~p-~-----~~~~i~~~l~~~~~~ 569 (621)
T 2vgl_A 500 GGYILGEFGNLIAGD---PRSSPLIQFNLLHSKFHL-CSVPTRALLLSTYIKFVNLFP-E-----VKATIQDVLRSDSQL 569 (621)
T ss_dssp HHHHHHHHTHHHHSS---TTSCHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCG-G-----GHHHHHHHHSSHHHH
T ss_pred HHHHhcchHHHhccc---CCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHCh-H-----HHHHHHHHHHHHhcC
Confidence 889999998766431 111 2456667766666 678999999999999876553 2 2233333333 333
Q ss_pred -cCChhHHHHHHHHHHHHH
Q 001307 514 -NGKQMVQEGALTALASVA 531 (1103)
Q Consensus 514 -~~~~~v~~~al~al~~l~ 531 (1103)
+.+.++|..|.....-+.
T Consensus 570 ~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 570 KNADVELQQRAVEYLRLST 588 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 778999999987766654
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=5e-12 Score=131.33 Aligned_cols=194 Identities=17% Similarity=0.177 Sum_probs=163.1
Q ss_pred CCchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC
Q 001307 352 SSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (1103)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 428 (1103)
|..+..|...|..+....+. ...+..+++.+...+. +.+..+|.+|+.+++.++...+..+.++...++|.++..+.
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~ 108 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK 108 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 44556777888888776331 1234567888888884 89999999999999999998887788999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc-cccCchHHHHHH
Q 001307 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSK 507 (1103)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~ll~~ 507 (1103)
|+++.||.+|..+|..++...+ ++.++|.+...+++ +++.+|..++.+|..++...+++ ...+|++.+++.
T Consensus 109 d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~ 180 (242)
T 2qk2_A 109 EKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTS 180 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 9999999999999999987542 45789999999999 89999999999999998887654 456899999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhhh-hHhhHhhhhHHHHHHH
Q 001307 508 LLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAIL 553 (1103)
Q Consensus 508 L~~~l~~~~~~v~~~al~al~~l~~~~~~~-~~~~~~~i~~~l~~~l 553 (1103)
+..++.+.++.+|..|..+++.++...|.. |.+|++.+-+.-...+
T Consensus 181 l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i 227 (242)
T 2qk2_A 181 LVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKI 227 (242)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999876 7888877655444443
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=3.9e-12 Score=131.12 Aligned_cols=191 Identities=12% Similarity=0.104 Sum_probs=158.1
Q ss_pred chhhHHHHHHH-HHHHcCC----CcchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcH-HHHH-HhHHHHHHHHHh
Q 001307 354 NYSVGQECLDR-LAIALGG----NTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCA-KVMV-KNLEQVLSMVLN 425 (1103)
Q Consensus 354 ~~~~a~~~l~~-l~~~~~~----~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~-~~~~-~~l~~i~~~l~~ 425 (1103)
.++.+...+.. +....+. ..-+..++..+...+ ++.+..+|.+|+.+++.++++.. ..+. +|...++|.++.
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~ 111 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLD 111 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 34455555555 5433210 111245677788888 78899999999999999999887 6777 899999999999
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc--ccccCch-H
Q 001307 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYL-D 502 (1103)
Q Consensus 426 ~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l-~ 502 (1103)
.+.|..+.||.++..++..+++.+.+.....|++.+++.++..+++ +++.+|..++.+|..++...+. ..+.+|+ +
T Consensus 112 ~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~ 190 (249)
T 2qk1_A 112 RTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKD 190 (249)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHH
Confidence 9999999999999999999999886643113488999999999999 8999999999999999998774 4467899 9
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh-hHhhHhhh
Q 001307 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAV 545 (1103)
Q Consensus 503 ~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~-~~~~~~~i 545 (1103)
.+++.+.+++.+.++.+|..|..+++.++...|+. |.||++.+
T Consensus 191 ~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 191 EVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999874 78887765
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.14 E-value=1.3e-08 Score=122.24 Aligned_cols=302 Identities=14% Similarity=0.204 Sum_probs=216.9
Q ss_pred HHhCCCHHHHHHHHHHHHHHHccc-hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001307 239 SLNNGNEATAQEALELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1103)
Q Consensus 239 ~l~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1103)
.+...+...+..+...+..+.... .....+ ..++..+...+.++. .. ..|+..+..+++.....+ ...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~--~~--~~a~~~~~~~~~~~~~~~----~~e~ 91 (986)
T 2iw3_A 22 KLSVATADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKK--TA--ANAMQAVAHIANQSNLSP----SVEP 91 (986)
T ss_dssp HHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHH--HH--HHHHHHHHHHTCTTTCCT----TTHH
T ss_pred hccccchhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccC--CH--HHHHHHHHHHHHhcCCCC----Cccc
Confidence 343333455566666666665422 111111 134555555554321 11 788888999987422222 2346
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC-ChHHHHH
Q 001307 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHA 396 (1103)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~a 396 (1103)
|+-.++|.++....+. ....+.+|..+.+.+...+++. ..+.++|.+...+.+. .|+.|.+
T Consensus 92 ~~~~~~~~~~~~~~dk-----------------~~~v~~aa~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~kw~~k~~ 153 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNK-----------------DKEIQSVASETLISIVNAVNPV-AIKALLPHLTNAIVETNKWQEKIA 153 (986)
T ss_dssp HHHTTHHHHHHHTTCS-----------------SHHHHHHHHHHHHHHHHHSCGG-GHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred chHHHHHHHHHHhcCC-----------------chHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhccccchHHHHH
Confidence 7777788888766533 2236778888999999999854 4588888888887644 7999999
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcc
Q 001307 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476 (1103)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~ 476 (1103)
|+.+++.+++..++.+...+++++|.+..++.|..+.|..+|..++..+|..+.. .-+...+|.|++++.+ +. .
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n----~d~~~~~~~~~~~~~~-p~-~ 227 (986)
T 2iw3_A 154 ILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN----KDIERFIPSLIQCIAD-PT-E 227 (986)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC----TTTGGGHHHHHHHHHC-TT-H
T ss_pred HHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC----cchhhhHHHHHHHhcC-hh-h
Confidence 9999999999999999999999999999999999999999999999999987763 4567889999999998 53 3
Q ss_pred hHHHHHHHHHHHHhc-CCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh--hhHhhHhhhhHHHHHHH
Q 001307 477 VQAHAASAVLNFSEN-CTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE--HFQKYYDAVMPFLKAIL 553 (1103)
Q Consensus 477 v~~~a~~al~~l~~~-~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~--~~~~~~~~i~~~l~~~l 553 (1103)
| . .++..+... +-.++-.|-+.-++|.|...|......++..+.-.+.+++.-..+ ...||++.++|-+....
T Consensus 228 ~-~---~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~ 303 (986)
T 2iw3_A 228 V-P---ETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNF 303 (986)
T ss_dssp H-H---HHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHT
T ss_pred h-H---HHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHh
Confidence 3 2 334444322 223334577888899999999988888899999999999987654 56799999999999988
Q ss_pred hhcCCcccchhhhHHHHHHHHHHHh
Q 001307 554 VNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 554 ~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
....+++.+.+-.+|++++...+..
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCCHHHHHHHHHHHHHHHHhhcc
Confidence 7777776666655566665555443
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.14 E-value=2.7e-09 Score=111.80 Aligned_cols=243 Identities=18% Similarity=0.197 Sum_probs=170.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhh
Q 001307 234 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (1103)
Q Consensus 234 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 312 (1103)
+.+...+.+++++++..++.+|..++...+........ ..++.++..+.. .+..+|..++..+..++.. .+..
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~---~~~~- 78 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASG---PDEA- 78 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS---CHHH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcC---ChHH-
Confidence 34455566788999999999999999876644333332 467777777754 3588899998888877752 1110
Q ss_pred hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChH
Q 001307 313 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 392 (1103)
Q Consensus 313 ~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 392 (1103)
...++ . .. .++.+...++++++.
T Consensus 79 ------~~~~~--------------------------------------------~---~~----~i~~l~~ll~~~~~~ 101 (252)
T 4hxt_A 79 ------IKAIV--------------------------------------------D---AG----GVEVLVKLLTSTDSE 101 (252)
T ss_dssp ------HHHHH--------------------------------------------H---TT----HHHHHHHHTTCSSHH
T ss_pred ------HHHHH--------------------------------------------H---CC----CHHHHHHHHcCCCHH
Confidence 00000 0 11 234445566677889
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001307 393 KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1103)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1103)
.|..++.+|+.++...++....... ..++.+...+.++++.+|..|+++|+.++...+.....-....+++.++..+.+
T Consensus 102 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 102 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC
Confidence 9999999999998665543332222 578889999999999999999999999987543322122346789999999998
Q ss_pred CCCcchHHHHHHHHHHHHhcCCcccccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhh
Q 001307 472 FQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1103)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~l~~~-l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~ 541 (1103)
+++.++..|+++|.+++...+ +..... -...++.|..++.++++.+|+.++.+++.+....+....+|
T Consensus 182 -~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 182 -TDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred -CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 889999999999999986432 111111 13467889999999999999999999999998766554444
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.13 E-value=2e-09 Score=112.90 Aligned_cols=243 Identities=18% Similarity=0.176 Sum_probs=173.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001307 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1103)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (1103)
++.+.+.++++++..|..|+.+|+.++...++....... .+++.+...++++++.+|..|+++|+.++.........-.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456667788888999999999999999887644333333 5789999999999999999999999999865322221112
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
-...++.++..+++ +++.++..|+++|.+++...+...-.-.-...++.|++++.++++.++..++.+++.++...+..
T Consensus 84 ~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 84 DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 34689999999998 88999999999999998643221000011246888899999999999999999999998754433
Q ss_pred hHhh-HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhH--HHHHHHHHHHhcCCCCCCCchhhHHH
Q 001307 538 FQKY-YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSYML 614 (1103)
Q Consensus 538 ~~~~-~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~--~~i~~~l~~l~~~~~~~~~~~~~~~~ 614 (1103)
.... -...+|.|...+.. .+..+|..|+.+++.++..- ......+ ...++.+.++..+ .+..++..+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~ 233 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGP--TSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQ 233 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSB--HHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHH
Confidence 2222 25688888888753 23468888999999987522 1122111 2356667665542 2345888999
Q ss_pred HHHHHHHhHhcCCcccc
Q 001307 615 QAWARLCKCLGQDFLPY 631 (1103)
Q Consensus 615 ~~~~~l~~~~~~~~~p~ 631 (1103)
.++++++...+....+|
T Consensus 234 ~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 234 RALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHHHTCBCCC---
T ss_pred HHHHHHHcCCCcccccc
Confidence 99999988877665554
No 59
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.12 E-value=5.1e-08 Score=111.44 Aligned_cols=370 Identities=15% Similarity=0.145 Sum_probs=223.0
Q ss_pred CCcc-hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh-hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhc
Q 001307 139 NGWP-ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1103)
Q Consensus 139 ~~w~-~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1103)
..|. .-+|.+.+++.++++..+..|...|..++....+.-.. .-...+|.|...|.++ +..++..|+.+|.++...-
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccC
Confidence 4664 46899999999999999988989998888643322111 1123578899999997 9999999999999997531
Q ss_pred CCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHhHHHHHHHHHHh-hc--------
Q 001307 217 TSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQI-AE-------- 282 (1103)
Q Consensus 217 ~~~~~~~~~--~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~-~~-------- 282 (1103)
+......+ ..-+|.+++.|.. ..+.+++..+..+|..++.... ......++.++..+..- ..
T Consensus 122 -~~~nk~~I~~~GaIp~LV~LL~s---~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 122 -DQDNKIAIKNCDGVPALVRLLRK---ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHH---CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC------
T ss_pred -CHHHHHHHHHcCCHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccc
Confidence 11122222 2345666665542 2467778888888888876432 11222233333322110 00
Q ss_pred ---CCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHH
Q 001307 283 ---AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQ 359 (1103)
Q Consensus 283 ---~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~ 359 (1103)
....+.+++..|..+|..++...+..-..++.....++.++..+-..+...+.+ .....-+.
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~---------------~~~~enav 262 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSD---------------SKLVENCV 262 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCS---------------CHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCcc---------------HHHHHHHH
Confidence 011256889999999999976311100011111222233333332221111100 00111122
Q ss_pred HHHHHHHHHc--------------------------CCCc--chHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhc--
Q 001307 360 ECLDRLAIAL--------------------------GGNT--IVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGC-- 408 (1103)
Q Consensus 360 ~~l~~l~~~~--------------------------~~~~--~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~-- 408 (1103)
.+|..|+... ++-. +-+.+++.+..+++ +.++..+++|..+|..++.+.
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 2222222110 0001 11334455555664 567999999999999998653
Q ss_pred -HHHHHHhH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC--------Ccch
Q 001307 409 -AKVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ--------NPRV 477 (1103)
Q Consensus 409 -~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~--------~~~v 477 (1103)
...+...+ ...++.|...|.++++.++..|+++|+.++..... ....-...+|.|+..|.+ + ...+
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~-~~~~~~~~~s~~v 419 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPG-GQQNSSWNFSEDT 419 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSS-SSCSGGGTCCHHH
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcC-CcccccccchHHH
Confidence 12222233 36689999999999999999999999999976432 233456789999999987 4 2467
Q ss_pred HHHHHHHHHHHHhcCCcccccC-chHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHH
Q 001307 478 QAHAASAVLNFSENCTPEILTP-YLDGIVSKLLVLLQNG--KQMVQEGALTALASVAD 532 (1103)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l~~-~l~~ll~~L~~~l~~~--~~~v~~~al~al~~l~~ 532 (1103)
+..||++|.+++..-... ... .-...++.|..++.+. .+.+++.|..++..+..
T Consensus 420 ~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 420 VISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 889999999998553221 111 1124578888888875 78889999999998875
No 60
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.08 E-value=8.7e-06 Score=104.00 Aligned_cols=478 Identities=14% Similarity=0.070 Sum_probs=256.3
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhh----hhhchhhH-HHHHHHHH
Q 001307 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI----GDTLTPHL-KHLHAVFL 190 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~----~~~l~~~~-~~l~~~l~ 190 (1103)
.+...|+.+-+.+..+-+. | +.|..+...|. -.+.+..+|..|+.+|...+... ++.-+..+ +.++..+.
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~--p-~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~ 99 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK--C-PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA 99 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH--C-TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4667898888888776542 3 46765554443 24557889999999999887642 22222222 23334433
Q ss_pred HhhCCC--CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc------
Q 001307 191 NCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 262 (1103)
Q Consensus 191 ~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~------ 262 (1103)
...... .+..||.....++..++... +..-||.++..+.+.+++ ++..+..++.+|..+.+..
T Consensus 100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d--------~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 100 NGTLNILEEENHIKDALSRIVVEMIKRE--------WPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HSSCCTTSSCHHHHHHHHHHHHHHHHHH--------STTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHh--------CcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 321110 26889999989998888752 122345555555555554 5556677788887776531
Q ss_pred --------hHHHHHhHHHHHHHHHHhhcCC-----------------CcchHHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001307 263 --------PRFLRRQLVDVVGSMLQIAEAE-----------------SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1103)
Q Consensus 263 --------~~~~~~~~~~l~~~l~~~~~~~-----------------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1103)
...+...++.+++.+..++... ..+..++..+++++...... .|. .
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~~------~ 241 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VSM------S 241 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SCH------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cCH------H
Confidence 1123445557777666655321 01223455566555544432 110 1
Q ss_pred hH----HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-C---cchHHH----HHHHHHh
Q 001307 318 FI----NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-N---TIVPVA----SEQLPAY 385 (1103)
Q Consensus 318 ~~----~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~-~---~~~~~l----~~~l~~~ 385 (1103)
++ ..+++.++..+.. ...+..|.+||..+...... + .++..+ +..+.+.
T Consensus 242 ~i~~~~~~ll~~l~~~l~~-------------------~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~ 302 (1204)
T 3a6p_A 242 HITAENCKLLEILCLLLNE-------------------QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSA 302 (1204)
T ss_dssp HHHTTTSHHHHHHHHGGGC-------------------TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHH
Confidence 11 1355655544321 12456788888888754321 1 111111 1112122
Q ss_pred hc--C------CChHHHHHHHHHHHHHHhhcHHHH--------HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhh
Q 001307 386 LA--A------PEWQKHHAALIALAQIAEGCAKVM--------VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1103)
Q Consensus 386 l~--~------~~~~~r~aal~~l~~l~~~~~~~~--------~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (1103)
.. + .+...++.-...+..+++.....+ .+.+..+++.++....+++..|-..++.....+.+..
T Consensus 303 ~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 303 AQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp HHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred hhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 11 1 112233333333333332211111 2357789999999999998888888887777666543
Q ss_pred c----hhHHhhhhhhhHHHH---HhhccCCCC------------------------cchHHHHHHHHHHHHhcCCccccc
Q 001307 450 G----PDLQNQFHPQVLPAL---AGAMDDFQN------------------------PRVQAHAASAVLNFSENCTPEILT 498 (1103)
Q Consensus 450 ~----~~~~~~~~~~il~~l---~~~l~~~~~------------------------~~v~~~a~~al~~l~~~~~~~~l~ 498 (1103)
. +.+ .++++.+++.+ +..+.- +. ...|......+..++...+..
T Consensus 383 ~~~~~~~~-~~~l~~Ll~vl~~~l~k~~y-p~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~--- 457 (1204)
T 3a6p_A 383 ILSRDPLL-LAIIPKYLRASMTNLVKMGF-PSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT--- 457 (1204)
T ss_dssp TTTTCHHH-HHHHHHHHHHHHHHHSCCCC-SSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred cccccHHH-HHHHHHHHHHHHHHHHHhcC-ccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH---
Confidence 2 222 46777888877 444322 11 012333444444444433221
Q ss_pred CchHHHHHHHHHHhhc----C-------------------C--hhHHHHHHHHHHHHHHhhhhhh-HhhHh-hhhHHHHH
Q 001307 499 PYLDGIVSKLLVLLQN----G-------------------K--QMVQEGALTALASVADSSQEHF-QKYYD-AVMPFLKA 551 (1103)
Q Consensus 499 ~~l~~ll~~L~~~l~~----~-------------------~--~~v~~~al~al~~l~~~~~~~~-~~~~~-~i~~~l~~ 551 (1103)
.++.+.+.+...+.+ . + ....+.....+.+++..+.... .++++ .+++.+++
T Consensus 458 -~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~ 536 (1204)
T 3a6p_A 458 -SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ 536 (1204)
T ss_dssp -HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 122222223222221 0 1 1223444555555554442211 13333 34555555
Q ss_pred HHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcC-CCC--------CCCchhhHHHHHHHHHHh
Q 001307 552 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-QME--------TDDPTTSYMLQAWARLCK 622 (1103)
Q Consensus 552 ~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~-~~~--------~~~~~~~~~~~~~~~l~~ 622 (1103)
.+-.. +.++..+|.+++.|++.+..-+. .-..+++.+++.++..... ..+ ....++..+..++.+++.
T Consensus 537 ~ll~~-~~~~p~l~~~~i~~l~~l~~~~~--~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~ 613 (1204)
T 3a6p_A 537 MVLNF-DTKDPLILSCVLTNVSALFPFVT--YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCR 613 (1204)
T ss_dssp HHHHC-CCSCHHHHHHHHHHHHHHGGGGG--TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCChHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHH
Confidence 54321 11344588889999998876554 2346788888877763221 110 011477888899999999
Q ss_pred HhcCCcccchhhhhHHHHHhcc
Q 001307 623 CLGQDFLPYMSVVMPPLLQSAQ 644 (1103)
Q Consensus 623 ~~~~~~~p~l~~i~~~ll~~~~ 644 (1103)
.+++.+.||++.+...+-..+.
T Consensus 614 ~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 614 DYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998877663
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.07 E-value=3.4e-08 Score=112.68 Aligned_cols=354 Identities=15% Similarity=0.109 Sum_probs=218.3
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc-hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHh
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l-~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (1103)
+|.+.++++++++..+..|...|..++...++.- .-.-...+|.+...|.++ ++.++..|+.+|.++... +.....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~--~~~~k~ 80 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFR--STTNKL 80 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSS--CHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 6788888999999999999999999885432211 011234678888999987 999999999999999863 111222
Q ss_pred HH--HhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhc--------CCC------c
Q 001307 224 RF--QDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE--------AES------L 286 (1103)
Q Consensus 224 ~~--~~~ip~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~--------~~~------~ 286 (1103)
.+ .+.+|.+++ .+. +++++++..++.+|..++.... .-...+...++.++.++. ... .
T Consensus 81 ~i~~~G~i~~Lv~----lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 81 ETRRQNGIREAVS----LLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHTTCHHHHHH----HHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHcCCHHHHHH----HHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 22 233555554 455 6788999999999999987522 111122256666666662 110 2
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcC----CCCCcccccCCCCCccccCCCchhhHHH
Q 001307 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLD----IEDDPLWHSAETEDEDAGESSNYSVGQE 360 (1103)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~----~~~~~~w~~~~~e~ed~~~~~~~~~a~~ 360 (1103)
+.++...|...+..++.. |.... ... +..++.++..+.. ...+. .....+..
T Consensus 156 ~~~v~~~a~~aL~nLs~~----~~~~~---~i~~~~g~i~~Lv~lL~~~~~~~~~~~---------------~~~e~a~~ 213 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA----DAGRQ---TMRNYSGLIDSLMAYVQNCVAASRCDD---------------KSVENCMC 213 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS----HHHHH---HHTTSTTHHHHHHHHHHHHHHHTCTTC---------------TTHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC----HHHHH---HHHHcCCCHHHHHHHHHhhccccCCch---------------HHHHHHHH
Confidence 456667898999988873 22111 111 1344444444431 00000 00000111
Q ss_pred HHHHHH-----------------------------------HH-------c----------CCCc-chHHHHHHHHHhhc
Q 001307 361 CLDRLA-----------------------------------IA-------L----------GGNT-IVPVASEQLPAYLA 387 (1103)
Q Consensus 361 ~l~~l~-----------------------------------~~-------~----------~~~~-~~~~l~~~l~~~l~ 387 (1103)
++..++ .. . |.+. +.+.+++.+..++.
T Consensus 214 ~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~ 293 (457)
T 1xm9_A 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293 (457)
T ss_dssp HHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence 111110 00 0 0000 11234444445554
Q ss_pred -CCChHHHHHHHHHHHHHHhhcHH---HH-HHhH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001307 388 -APEWQKHHAALIALAQIAEGCAK---VM-VKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1103)
Q Consensus 388 -~~~~~~r~aal~~l~~l~~~~~~---~~-~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 460 (1103)
+.+...+++|+.+|+.++.+... .+ ...+ ...+|.+...+.+++..+|..|+++|+.++..- ......-..
T Consensus 294 ~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~ 371 (457)
T 1xm9_A 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQ 371 (457)
T ss_dssp HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHh
Confidence 45689999999999999865322 22 2223 256789999999999999999999999998753 332333457
Q ss_pred hHHHHHhhccCCCCc------chHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHH
Q 001307 461 VLPALAGAMDDFQNP------RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVA 531 (1103)
Q Consensus 461 il~~l~~~l~~~~~~------~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~-~~~v~~~al~al~~l~ 531 (1103)
.+|.|++.|.. +++ .+...++.+|.+++..-+.....-.-...++.|..++.++ +..+++.|...+..+.
T Consensus 372 ~i~~Lv~lL~~-~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 372 VFPEVTRLLTS-HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp THHHHHHTTTS-CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred hhHHHHHhccC-CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 89999999987 433 5777899999998865432110001235678888888888 8899999988887664
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.05 E-value=2.8e-09 Score=107.98 Aligned_cols=193 Identities=20% Similarity=0.283 Sum_probs=145.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
..+.+..+++++++..|..|+.+|+.++.+..+....... ..++.++..++++++.+|..|+++|+.++.........-
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4456677888999999999999999999776654433333 578999999999999999999999999986433322112
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~-l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
.-...+|.++..+++ +++.++..|+++|.+++...... .... -...++.|+.++.+++..++..++.+++.++....
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHH-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 335689999999999 88999999999999998653321 1111 23468889999999999999999999999997644
Q ss_pred hhhHhh-HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 536 EHFQKY-YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 536 ~~~~~~-~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
...... -...++.|...+.. .+..+|..|..+++.++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSH----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHh
Confidence 433222 23577888887753 23457888888888775
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.04 E-value=1e-08 Score=109.09 Aligned_cols=253 Identities=17% Similarity=0.191 Sum_probs=170.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhh
Q 001307 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (1103)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 312 (1103)
++.+...+.++++.+|..++..|..+.. +..++.+...+. +.+..+|..|...+..+...
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~-------- 84 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIKIC-------- 84 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhccc--------
Confidence 3455556778899999999999998763 234445555554 34688999998887655421
Q ss_pred hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChH
Q 001307 313 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 392 (1103)
Q Consensus 313 ~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 392 (1103)
...+..+++.+...+.... +...+..+..+|..+....+ ...+.+++.+...+++++|.
T Consensus 85 ---~~~~~~l~~~L~~~~~~d~----------------~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~ 143 (280)
T 1oyz_A 85 ---KKCEDNVFNILNNMALNDK----------------SACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTN 143 (280)
T ss_dssp ---TTTHHHHHHHHHHHHHHCS----------------CHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHH
T ss_pred ---cccchHHHHHHHHHHhcCC----------------CHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHH
Confidence 1123345555443221110 12245567777777764432 33556778888889999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 001307 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1103)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1103)
+|.+++.+++.+.. +..++.+...+.|+++.||..|+++|+.+... .+.+++.+...++|
T Consensus 144 vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d- 203 (280)
T 1oyz_A 144 VRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQD- 203 (280)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcC-
Confidence 99999999987653 23567777888999999999999999987421 23577888889998
Q ss_pred CCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHH
Q 001307 473 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1103)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1103)
+++.||..|+.+|..+. .+ ..++.|...+.+++ +|..+..+++.+.. +..+|.|...
T Consensus 204 ~~~~vR~~A~~aL~~~~---~~--------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~ 260 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRK---DK--------RVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTM 260 (280)
T ss_dssp SCHHHHHHHHHHHHHTT---CG--------GGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CH--------hhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHH
Confidence 88999999999998874 11 23455566666544 88888888888753 2567888888
Q ss_pred HhhcCCcccchhhhHHHHHH
Q 001307 553 LVNATDKSNRMLRAKSMECI 572 (1103)
Q Consensus 553 l~~~~~~~~~~lr~~a~~~l 572 (1103)
+....+ ..++..+++.+
T Consensus 261 l~~~~~---~~~~~~~~~~l 277 (280)
T 1oyz_A 261 LYKFDD---NEIITSAIDKL 277 (280)
T ss_dssp HTTSSC---CHHHHHHHHHH
T ss_pred HhcCCC---cHHHHHHHHHh
Confidence 765332 23444455444
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.8e-06 Score=98.56 Aligned_cols=460 Identities=13% Similarity=0.132 Sum_probs=252.0
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc--CCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHH-Hh
Q 001307 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFL-NC 192 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~--s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~-~~ 192 (1103)
.+..++-.+.-.+..+.+.. -.|++ +.++.+.+. ....++|..++.++..+.+..++.+...+..++..+. ..
T Consensus 145 ~~~~~~~~l~~~~~l~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~ 220 (778)
T 3opb_A 145 EDTHVTYLLSIILQLLNKFK---YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEA 220 (778)
T ss_dssp CSSCHHHHHHHHHHHHHHSC---CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHcC---ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhh
Confidence 35567666666666665543 36888 777777654 4567899999999999998888776666666665332 21
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhH
Q 001307 193 LTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL 270 (1103)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 270 (1103)
=.+. ..+-...++.++..++...+.. ....| .++.|.+.+.+. ...+......+++.|...+..... +.++
T Consensus 221 ~~~~-~~~~~~~~~~~l~~lfPi~p~~-~s~lfl~e~~~~~l~~~~~---~~~~~~~~~a~L~lLsaACi~~~c--R~~I 293 (778)
T 3opb_A 221 EIDV-GNDPLSIIVKTLSELYPSLTTL-CSEIFLTKGLSKLFKKRVF---EEQDLQFTKELLRLLSSACIDETM--RTYI 293 (778)
T ss_dssp HHTC-SSCHHHHHHHHHHHHTTTTHHH-HHHHHSTTTHHHHHHHHHH---SSCCHHHHHHHHHHHHHHCCSHHH--HHHH
T ss_pred ccCC-CCccHHHHHHHHHHHhcCCHHH-HHHHHccccHHHHHHHHHh---cccchHHHHHHHHHHHHHhCCcHH--HHHH
Confidence 1221 1122334555565555432110 11111 122333433322 234566667788888877754322 2222
Q ss_pred -HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccc
Q 001307 271 -VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDA 349 (1103)
Q Consensus 271 -~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~ 349 (1103)
...++.+.+.+.+ +.+|..|.-.|..+... +.. . ..-+..+.+.+..++...+.+
T Consensus 294 ~~~~~~~L~~~l~~----~~ir~lAavvL~KL~~~----~~~-~--~~si~~La~~~~~~L~~~~~~------------- 349 (778)
T 3opb_A 294 TENYLQLLERSLNV----EDVQIYSALVLVKTWSF----TKL-T--CINLKQLSEIFINAISRRIVP------------- 349 (778)
T ss_dssp HHHHHHHHHHHTTS----GGGHHHHHHHHHHHTGG----GTC-T--TCCHHHHHHHHHHHTTTCCHH-------------
T ss_pred HHhHHHHHHHHhcc----HHHHHHHHHHHHHHhcC----CCC-C--cCcHHHHHHHHHHHHhcCCcc-------------
Confidence 2344555555532 46788777666666542 111 1 123456777777777653211
Q ss_pred cCCCchhhHHHHHHHHHHHcCCCc-c--hHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcH----------------
Q 001307 350 GESSNYSVGQECLDRLAIALGGNT-I--VPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCA---------------- 409 (1103)
Q Consensus 350 ~~~~~~~~a~~~l~~l~~~~~~~~-~--~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~---------------- 409 (1103)
....|.+.|..++..-..+. + -+.+++.+.+.+++ .+...-++++..|..+....+
T Consensus 350 ----~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A 425 (778)
T 3opb_A 350 ----KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX 425 (778)
T ss_dssp ----HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC---------
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc
Confidence 02223333333221000000 0 01112222222221 222333333333333322110
Q ss_pred -----------------HHHHH----hH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001307 410 -----------------KVMVK----NL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1103)
Q Consensus 410 -----------------~~~~~----~l--~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~ 466 (1103)
..+.. .+ ..++|.+...+.++++.+|..|+++|+.++..-...- .-.-...++.|+
T Consensus 426 ~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~-~lvqqGal~~LL 504 (778)
T 3opb_A 426 XXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP-QLAQQGAVKIIL 504 (778)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH-HHHHTTHHHHHH
T ss_pred cccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHH
Confidence 00001 10 1467888889999999999999999999986632211 112346788899
Q ss_pred hhccCCCCcc---hHHHHHHHHHHHHhcCCccccc-Cc-hHHHHHHHHHHhhc-CCh-------------hHHHHHHHHH
Q 001307 467 GAMDDFQNPR---VQAHAASAVLNFSENCTPEILT-PY-LDGIVSKLLVLLQN-GKQ-------------MVQEGALTAL 527 (1103)
Q Consensus 467 ~~l~~~~~~~---v~~~a~~al~~l~~~~~~~~l~-~~-l~~ll~~L~~~l~~-~~~-------------~v~~~al~al 527 (1103)
..+.+ .... +|..|+.+|.++.-...+..+- .| ....++.|+.++.. +.. .-+..|+.|+
T Consensus 505 ~lL~s-~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~AL 583 (778)
T 3opb_A 505 EYLAN-KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLAL 583 (778)
T ss_dssp HHTTC-C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHH
T ss_pred HHHhc-CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHH
Confidence 98887 4333 7999999999998665544321 11 12677888888872 211 1266899999
Q ss_pred HHHHHhhh---hhhH-hhHh--hhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhCh--hhhh----hhHHHHHHHH
Q 001307 528 ASVADSSQ---EHFQ-KYYD--AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK--DKFR----DDAKQVMEVL 595 (1103)
Q Consensus 528 ~~l~~~~~---~~~~-~~~~--~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~--~~~~----~~~~~i~~~l 595 (1103)
+.++.... +... ..+. ..+|.|...+.. +...+|..|.++++.++..-.. ..|. |-..+=++.+
T Consensus 584 TNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s----~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lL 659 (778)
T 3opb_A 584 TNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD----ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNIL 659 (778)
T ss_dssp HHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHH
T ss_pred HHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC----CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHH
Confidence 99998642 2222 2333 477888887753 2346899999999999863321 1232 1122236777
Q ss_pred HHHhcCCCCCCCchhhHHHHHHHHHHhH
Q 001307 596 MSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1103)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1103)
+.+... .|...+..+..+++++...
T Consensus 660 V~Ll~s---~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 660 VKLLQL---SDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHGGGC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC---CCHHHHHHHHHHHHHhcCC
Confidence 776653 3456777887777776443
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.01 E-value=5.7e-09 Score=109.29 Aligned_cols=232 Identities=18% Similarity=0.218 Sum_probs=162.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001307 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1103)
Q Consensus 236 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 314 (1103)
+...+.+++++++..++.+|..++..........+. ..++.++.++... +..+|..|+..+..++.. .+.
T Consensus 17 ~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~---~~~---- 87 (252)
T 4db8_A 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG---GNE---- 87 (252)
T ss_dssp HHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS---CHH----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC---CHH----
Confidence 344556789999999999997766543333222222 5677888887643 488898898888877751 110
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHH
Q 001307 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1103)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1103)
.... +.. .. .++.+...++++++..|
T Consensus 88 ---~~~~-------------------------------------------i~~----~g----~i~~L~~lL~~~~~~v~ 113 (252)
T 4db8_A 88 ---QIQA-------------------------------------------VID----AG----ALPALVQLLSSPNEQIL 113 (252)
T ss_dssp ---HHHH-------------------------------------------HHH----TT----HHHHHHHGGGCSCHHHH
T ss_pred ---HHHH-------------------------------------------HHH----cC----CHHHHHHHHcCCCHHHH
Confidence 0000 000 01 34455567777889999
Q ss_pred HHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC
Q 001307 395 HAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (1103)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~ 473 (1103)
..|+.+|+.++........... ...++.+...+.++++.+|..|+++|+.++.........-....++|.++..+.+ +
T Consensus 114 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~ 192 (252)
T 4db8_A 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-P 192 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC-S
T ss_pred HHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC-C
Confidence 9999999999887655322222 2588999999999999999999999999997543322112236789999999999 8
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 474 NPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
++.++..|+++|.+++...+.. ..... ...++.|..++.+.++.+|..|..+++.++.
T Consensus 193 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 193 NEQILQEALWALSNIASGGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999998543211 11112 2367888889999999999999999988753
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.99 E-value=4.9e-09 Score=109.78 Aligned_cols=234 Identities=18% Similarity=0.243 Sum_probs=160.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001307 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1103)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (1103)
++.+...++++++..|..|+.+|..+.....+....... ..++.++..++++++.+|..|+++|+.++.........-.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344556777889999999999997655543332222222 5789999999999999999999999999974333221112
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
-...+|.++..+++ +++.++..|+++|.+++.......-.-.-...++.|++++.++++.++..++.+++.++......
T Consensus 94 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 94 DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 34589999999999 88999999999999998654321000112247888999999999999999999999998755443
Q ss_pred hHhhH-hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHhcCCCCCCCchhhHHHH
Q 001307 538 FQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK-QVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1103)
Q Consensus 538 ~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~-~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1103)
..... ..++|.|...+... +..+|..|+.+++.++..-. +....... ..++.+..+..+ .+..++..+..
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~~ 244 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQE 244 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHHH
T ss_pred HHHHHHCCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHHH
Confidence 32222 56788888887542 34678889999998874221 22222221 255666654442 23457777777
Q ss_pred HHHHHH
Q 001307 616 AWARLC 621 (1103)
Q Consensus 616 ~~~~l~ 621 (1103)
++++++
T Consensus 245 ~L~~l~ 250 (252)
T 4db8_A 245 ALEKLQ 250 (252)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 777664
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.98 E-value=2.4e-08 Score=106.26 Aligned_cols=254 Identities=13% Similarity=0.118 Sum_probs=166.5
Q ss_pred hHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHh
Q 001307 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1103)
Q Consensus 144 ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (1103)
-++.+.+.+.++++.+|..|+..|+.+.. +..++.+...+.++ ++.+|..|+.+++.+... ..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~------~~ 86 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDK-NYIRRDIGAFILGQIKIC------KK 86 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCC------TT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCC-CHHHHHHHHHHHHHhccc------cc
Confidence 36777888889999999999999987752 24566777888887 899999999998765321 01
Q ss_pred HHHhhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001307 224 RFQDLLPLMMRTLT-ESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1103)
Q Consensus 224 ~~~~~ip~ll~~l~-~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 302 (1103)
.++.+++.+. .+++++++.+|..++..|..+....+.. ...+++.+...+. +.+..+|..++..+..+.
T Consensus 87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~--d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAF--DKSTNVRRATAFAISVIN 156 (280)
T ss_dssp ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTT--CSCHHHHHHHHHHHHTC-
T ss_pred ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhh--CCCHHHHHHHHHHHHhcC
Confidence 1233444444 2456788999999999999887543321 2345556666554 457889998888776543
Q ss_pred HhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHH
Q 001307 303 EARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQL 382 (1103)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l 382 (1103)
. + ..++.+...+.+. +...+..+..++..+. .-.+.+++.+
T Consensus 157 ~-----~-----------~~~~~L~~~l~d~-----------------~~~vr~~a~~aL~~~~------~~~~~~~~~L 197 (280)
T 1oyz_A 157 D-----K-----------ATIPLLINLLKDP-----------------NGDVRNWAAFAININK------YDNSDIRDCF 197 (280)
T ss_dssp ------------------CCHHHHHHHHTCS-----------------SHHHHHHHHHHHHHHT------CCCHHHHHHH
T ss_pred C-----H-----------HHHHHHHHHHcCC-----------------CHHHHHHHHHHHHhhc------cCcHHHHHHH
Confidence 3 1 1334444444321 1123445556665542 1124556677
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001307 383 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1103)
Q Consensus 383 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il 462 (1103)
...++++++.+|..++.+|+.+.. +..++.+...+.|++ ||..|..+|+.+.. +.++
T Consensus 198 ~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~ 254 (280)
T 1oyz_A 198 VEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLL 254 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGH
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhh
Confidence 778888899999999999987752 234555666667755 88999999988753 2567
Q ss_pred HHHHhhccCCCCcchHHHHHHHHH
Q 001307 463 PALAGAMDDFQNPRVQAHAASAVL 486 (1103)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~ 486 (1103)
|.|.+.+++.+++.++..+..++.
T Consensus 255 ~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 255 PVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhh
Confidence 778887766456666666666553
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3e-06 Score=98.29 Aligned_cols=424 Identities=12% Similarity=0.117 Sum_probs=246.7
Q ss_pred CHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcccC-CCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhh-
Q 001307 97 SLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP-ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY- 173 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~-~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~- 173 (1103)
+..-|+.|....+..|..- .+..+|..++-++.++.....+ .....++.+.+..++.+++...|+.|+..|..+.-.
T Consensus 286 ~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~ 365 (778)
T 3opb_A 286 DETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKA 365 (778)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS
T ss_pred CcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH
Confidence 3555666666655555431 2357888888888887663322 234467889999999887766799999999988753
Q ss_pred -hhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcch-HhHHHhhHHHHHHHHHHHHhCCCHHHHHHH
Q 001307 174 -IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD-RDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1103)
Q Consensus 174 -~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~ 251 (1103)
+.+.+... ..++..+...+.+..+..+...++..+.++..+.+.... .+....+-+..-......-...++......
T Consensus 366 ~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~ 444 (778)
T 3opb_A 366 SVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKED 444 (778)
T ss_dssp HHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHH
Confidence 33444432 345667777777533667888999999999886543111 111111111100000000000010000001
Q ss_pred HHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhh
Q 001307 252 LELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSML 330 (1103)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l 330 (1103)
+..+. ...+.. ..+++.+...+.. .++.+|..+...+..++...+. |. .++ +..++.++..+
T Consensus 445 v~~~~------~~~l~e--aGvIp~Lv~Ll~S--~s~~~re~A~~aL~nLS~d~~~-----R~--~lvqqGal~~LL~lL 507 (778)
T 3opb_A 445 ILLFN------EKYILR--TELISFLKREMHN--LSPNCKQQVVRIIYNITRSKNF-----IP--QLAQQGAVKIILEYL 507 (778)
T ss_dssp HHHHH------HHHTTT--TTHHHHHHHHGGG--SCHHHHHHHHHHHHHHHTSGGG-----HH--HHHHTTHHHHHHHHT
T ss_pred HHHHH------HHHHHH--CcCHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCHHH-----HH--HHHHCCCHHHHHHHH
Confidence 11100 000000 1355666666643 4788999999999999873211 11 112 34567777776
Q ss_pred cCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHc------CCCcchHHHHHHHHHhhcC-CC-------------
Q 001307 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL------GGNTIVPVASEQLPAYLAA-PE------------- 390 (1103)
Q Consensus 331 ~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~~-~~------------- 390 (1103)
....+. ....+..|..+|.++.... ++.... ..++.+.+++.. +.
T Consensus 508 ~s~~~~--------------~~~~k~~AA~ALArLlis~np~~~f~~~~~~-~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 508 ANKQDI--------------GEPIRILGCRALTRMLIFTNPGLIFKKYSAL-NAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp TCC-----------------CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST-THHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred hcCCCc--------------chHHHHHHHHHHHHHHhcCCHHHHcCCCccc-cchHHHHHHcCCCCCccccccccccccc
Confidence 543210 0113456777887776432 222222 344555555551 11
Q ss_pred hHHHHHHHHHHHHHHhhcH---HHH-HHhHH--HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh----h
Q 001307 391 WQKHHAALIALAQIAEGCA---KVM-VKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP----Q 460 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~---~~~-~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~----~ 460 (1103)
-..+.-|+.+|..++.... +.+ ...+. ..++.+...+.+++..||.+|++++..++..-.. +...++. .
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~-i~~k~~~~~~~~ 651 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT-IAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG-TGGGTSCCSSHH
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH-HHHHHHhhcCch
Confidence 1347889999999998751 222 22343 4789999999999999999999999999964321 1012321 1
Q ss_pred ---hHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc--ccccCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHh
Q 001307 461 ---VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADS 533 (1103)
Q Consensus 461 ---il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l~~ll~~L~~~l~~--~~~~v~~~al~al~~l~~~ 533 (1103)
=++.++..++. .+..+|.+|+++|.++....+. ..+. -....++.++.++++ .+..+|..++.++..++..
T Consensus 652 ~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll-~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 652 SLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELL-TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHT-TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHH-HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 27788888887 8899999999999999754432 1111 123567788888888 7899999999999999963
Q ss_pred hh-----hhhHhhH--hhhhHHHHHHHhhc
Q 001307 534 SQ-----EHFQKYY--DAVMPFLKAILVNA 556 (1103)
Q Consensus 534 ~~-----~~~~~~~--~~i~~~l~~~l~~~ 556 (1103)
.. +.+..+. ..+...+..+++..
T Consensus 730 ~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 730 IPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp CCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred hccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 32 2233333 23445555555443
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.97 E-value=8.2e-07 Score=106.78 Aligned_cols=304 Identities=12% Similarity=0.198 Sum_probs=213.9
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC--CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhh--hchhh
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTPH 181 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~--~l~~~ 181 (1103)
..+++.+... +..-++.++..++.+....... -.| .++..+...+.+.... +.|+.+++.+++..+. .+.++
T Consensus 17 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 17 EELFQKLSVA-TADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHHHTTC-CTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHHHhhcccc-chhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc
Confidence 3366666653 3444556666666665533221 244 5777888777765444 8999999999977643 45677
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001307 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1103)
+-.+++.++....|. ...||.+|-.++..++..++ ......++|.++..+.. +..+.....++.++..+++.
T Consensus 93 ~~~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~----~~a~~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 93 IVQLVPAICTNAGNK-DKEIQSVASETLISIVNAVN----PVAIKALLPHLTNAIVE---TNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSC----GGGHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHH
Confidence 777889999999997 88999999999999998874 33345566666665532 34789999999999999998
Q ss_pred chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc
Q 001307 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1103)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~ 341 (1103)
.+..+...+++++|.+-..+. |...+++..|...+..+|..- . .+...+++ |.++..|.++++
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~--d~k~~v~~~~~~~~~~~~~~~---~--n~d~~~~~----~~~~~~~~~p~~------ 227 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMW--DTKKEVKAAATAAMTKATETV---D--NKDIERFI----PSLIQCIADPTE------ 227 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHGGGC---C--CTTTGGGH----HHHHHHHHCTTH------
T ss_pred hHHHHHHhccchhcchHhhcc--cCcHHHHHHHHHHHHHHHhcC---C--CcchhhhH----HHHHHHhcChhh------
Confidence 899999999999999988774 567899999999998888731 1 12333444 444444443311
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001307 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1103)
Q Consensus 342 ~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1103)
--+|+..|+. ..|+..+ + .+-+.-++|
T Consensus 228 ----------------~~~~~~~l~~----~tfv~~v-----------~----------------------~~~l~~~~p 254 (986)
T 2iw3_A 228 ----------------VPETVHLLGA----TTFVAEV-----------T----------------------PATLSIMVP 254 (986)
T ss_dssp ----------------HHHHHHHHTT----CCCCSCC-----------C----------------------HHHHHHHHH
T ss_pred ----------------hHHHHHHhhc----CeeEeee-----------c----------------------chhHHHHHH
Confidence 1234444442 1111100 0 134455678
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHhhhhhc-hhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhc
Q 001307 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLG-PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1103)
.+..+|++....+++.++..+.++|+-.. |....+|++.++|.+-+......+|++|..|-.++..+...
T Consensus 255 ~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 255 LLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888999888653 33336899999999998887767899999998888888654
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.94 E-value=1.3e-07 Score=105.78 Aligned_cols=361 Identities=13% Similarity=0.107 Sum_probs=202.4
Q ss_pred hhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC-----------ChHHHHHHHHHHHH
Q 001307 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-----------NPDVKIAALNAVIN 211 (1103)
Q Consensus 143 ~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~-----------~~~vr~~a~~~l~~ 211 (1103)
+.++.+.+.+.+.+... .++.|..+....+--..-.-...+|.|.+.|.... ++.+|..|.+++.+
T Consensus 32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp -------------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 34555666665555432 33333333332221000112345667777777531 37999999999999
Q ss_pred HHHhcCCcchHhHHHhhH------HHHHHHHHHHHhCCC--HH-----HH-------HHHHHHHHHHHccchHHHHHhHH
Q 001307 212 FIQCLTSSADRDRFQDLL------PLMMRTLTESLNNGN--EA-----TA-------QEALELLIELAGTEPRFLRRQLV 271 (1103)
Q Consensus 212 l~~~~~~~~~~~~~~~~i------p~ll~~l~~~l~~~~--~~-----~~-------~~~~~~l~~l~~~~~~~~~~~~~ 271 (1103)
++..-++......-...+ +.....+.+++.+.. .+ ++ ..++.+|..+... ...+..+-
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~--~e~R~~i~ 186 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD--EEHRHAMN 186 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS--HHHHHHHH
T ss_pred HHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 998754332221111111 112222333343321 11 22 3678888888543 22333322
Q ss_pred --HHHHHHHHhhc---------CCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH---HHHHHHHHHhhcCCCCCc
Q 001307 272 --DVVGSMLQIAE---------AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI---NRLFAILMSMLLDIEDDP 337 (1103)
Q Consensus 272 --~l~~~l~~~~~---------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~ 337 (1103)
..++.++.++. ....+..++..|...|..++... +. . ...+ ...+|.++..+...++
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~---~~-~---k~~i~~~~GaIp~LV~LL~s~~~-- 257 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD---VA-N---KATLCSMKGCMRALVAQLKSESE-- 257 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC---HH-H---HHHHHHCHHHHHHHHHGGGCSCH--
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC---cc-c---HHHHHHcCCcHHHHHHHHhCCCH--
Confidence 24444444442 11123567888999999998731 11 0 1122 4568888888763211
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCC---Ccch-HHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhhcHHHH
Q 001307 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIV-PVASEQLPAY-LAAPEWQKHHAALIALAQIAEGCAKVM 412 (1103)
Q Consensus 338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~-~~l~~~l~~~-l~~~~~~~r~aal~~l~~l~~~~~~~~ 412 (1103)
.....+..+|..|+..-.. ..+. .-.++.+.+. +.+.+...+..++.++..++..+.+.-
T Consensus 258 ---------------~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 258 ---------------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp ---------------HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---------------HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 1334455666666531000 0111 1134555554 456788899999999999987554421
Q ss_pred HHhH--HHHHHHHHhcCCCCCh----hHHHHHHHHHHHhhhh--hchhHHhh-hhhhhHHHHHhhccCCCCcchHHHHHH
Q 001307 413 VKNL--EQVLSMVLNSFRDPHP----RVRWAAINAIGQLSTD--LGPDLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAAS 483 (1103)
Q Consensus 413 ~~~l--~~i~~~l~~~l~d~~~----~vr~~a~~~L~~l~~~--~~~~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~ 483 (1103)
.... ...++.+...+.++++ .++..|+++|..++.. ..+..... .-...+|.|+..|.+ ++..++..|++
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~ 401 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACG 401 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHH
Confidence 1221 3577888888876654 4899999999999863 12222112 124678999999998 88899999999
Q ss_pred HHHHHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001307 484 AVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1103)
Q Consensus 484 al~~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~ 535 (1103)
+|.+++.... +.. .++ ...++.|..++.+.+..+++.|..++..++..-+
T Consensus 402 aL~nLa~~~~-~~~-~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 402 TLWNLSARNP-KDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHSSCH-HHH-HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHcCCH-HHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999985422 211 222 3457889999999999999999999999986543
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.90 E-value=7.9e-07 Score=101.72 Aligned_cols=361 Identities=10% Similarity=0.050 Sum_probs=223.9
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC---cchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhh-
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH- 181 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~---w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~- 181 (1103)
..+++.|.+ .+..++..++.++..++...-+... -...+|.|.+++.+++..+++.|..+|..++....+.-+..
T Consensus 51 ~~LV~~L~s-~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 356777876 5888999899999888763211000 12458999999999999999999999999986311111111
Q ss_pred -HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHH--------------HhCCCHH
Q 001307 182 -LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES--------------LNNGNEA 246 (1103)
Q Consensus 182 -~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~--------------l~~~~~~ 246 (1103)
-...++.|...|.+..+..++..+..+|.++...- .........-+|.+++.+... ....+++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 12356777777776337789999999998887532 111222334566666654211 1123578
Q ss_pred HHHHHHHHHHHHHccchH---HHHHhHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHhhh-ccchhhh-----
Q 001307 247 TAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAE----AESLEEGTRHLAIEFVITLAEARE-RAPGMMR----- 313 (1103)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~~~----~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~----- 313 (1103)
++..+..+|..++...+. .+... ..+++.++.++. ..+.+......|+..|..++.... ..|...+
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 899999999999875432 22221 123333443332 233456677778888877764210 1111000
Q ss_pred -------------cchh-hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--Cc---c
Q 001307 314 -------------KLPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NT---I 374 (1103)
Q Consensus 314 -------------~~~~-~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~--~~---~ 374 (1103)
.... +-...++.++..+..... ......|..+|..|+..-++ .. .
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~----------------~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT----------------PAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCC----------------HHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 0000 112345555555532210 11334566667666532110 00 1
Q ss_pred h--HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCCC--------ChhHHHHHHHHH
Q 001307 375 V--PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDP--------HPRVRWAAINAI 442 (1103)
Q Consensus 375 ~--~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~--------~~~vr~~a~~~L 442 (1103)
+ ...+|.+..++.+++...+..|..+|+.++.+.. ..+ -...++.++..|.++ +..++..|+++|
T Consensus 351 v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 351 LRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp HTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 1 2357888889999999999999999999988643 222 246788888888765 457889999999
Q ss_pred HHhhhhhchhHHhhhhhhhHHHHHhhccCCC--CcchHHHHHHHHHHHHh
Q 001307 443 GQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ--NPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~~v~~~a~~al~~l~~ 490 (1103)
+.++..-......-.-...+|.|+..+.+ . .+.+++.|+++|.+++.
T Consensus 428 ~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s-~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 428 NEVIAENLEAAKKLRETQGIEKLVLINKS-GNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTC-SSSCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCCChHHHHHHHHHHHHHHc
Confidence 99875433332222345788999999887 4 77899999999999875
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.89 E-value=2.1e-06 Score=95.98 Aligned_cols=385 Identities=15% Similarity=0.095 Sum_probs=195.6
Q ss_pred CCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH--------HHHHHHHHHccCC-----------ChhHHHHHH
Q 001307 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS--------LTLKLAHLLQRSP-----------HPEARAMAA 78 (1103)
Q Consensus 18 ~~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~--------~~~~L~~il~~~~-----------~~~~R~~a~ 78 (1103)
++..+.+..++..+.+.|.+. .-..|..+.. +|+. .++.|.+++..+. +++.|.-|+
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp -----------------CCHH---HHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH---HHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 445567788888887777663 4445666666 4543 3678889888633 378999999
Q ss_pred HHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc-cCC-CCcchhHHHHHHhhcCCC
Q 001307 79 VLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI-LPE-NGWPELLPFMFQCVSSDS 156 (1103)
Q Consensus 79 ~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~-~~~-~~w~~ll~~l~~~~~s~~ 156 (1103)
-.|.+++... +++........++..|.. +|...-..+.-+.... ..+ .+-| .+ .+-
T Consensus 104 ~al~ni~~~~--------~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~ 161 (458)
T 3nmz_A 104 AALHNIIHSQ--------PDDKRGRREIRVLHLLEQ-----IRAYCETCWEWQEAHEPGMDQDKNP--MP-------APV 161 (458)
T ss_dssp HHHHHHHHHS--------CSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTTSSSSCCCSCC-----------CCC
T ss_pred HHHHHHHccC--------cchhHHHHHHHHHHHHHH-----hhhhhHHHHHHHHhhccccccccCC--cc-------chh
Confidence 9999988764 122222222233333332 1111111111111110 000 0000 00 000
Q ss_pred HhHHHHHHHHHHHhhhhhhhhchhhH--HHHHHHHHHhhC----------CCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001307 157 VKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLT----------NSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1103)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~----------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1103)
......|+.+|+.+... +..+..+ ...++.+...+. +..++.++..|..+|.++...- ......
T Consensus 162 ~~~~~qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~--~~~k~~ 237 (458)
T 3nmz_A 162 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKAT 237 (458)
T ss_dssp TTTTHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred hHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC--cccHHH
Confidence 01112556666666433 1111111 112233333331 1124678999999999988532 111111
Q ss_pred HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001307 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1103)
Q Consensus 225 ~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 302 (1103)
+. -....++.|...+.+++++++..++.+|..++.......+..+. ..++.++.++.. ..+..++..+...+..++
T Consensus 238 i~-~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~-s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 238 LC-SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HH-HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT-CCSHHHHHHHHHHHHHHH
T ss_pred HH-HcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHc
Confidence 21 01234555566667889999999999999998642111222221 356666665322 235678888888888777
Q ss_pred HhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001307 303 EARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1103)
Q Consensus 303 ~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~ 380 (1103)
.. .+.. + ..+. ...+|.++..+....+
T Consensus 316 ~~---~~~n-k--~~I~~~~Gal~~Lv~LL~~~~~--------------------------------------------- 344 (458)
T 3nmz_A 316 AH---CTEN-K--ADICAVDGALAFLVGTLTYRSQ--------------------------------------------- 344 (458)
T ss_dssp HH---CHHH-H--HHHHHSTTHHHHHHHHTTCCCS---------------------------------------------
T ss_pred cC---CHHH-H--HHHHHhcCcHHHHHHHhcCCCC---------------------------------------------
Confidence 62 1100 0 0111 1234444443322110
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHh---hcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 381 QLPAYLAAPEWQKHHAALIALAQIAE---GCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~---~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
+..+..+..|..+|..++. +..+...... ...++.++..|.+.+..++..|+++|+.++.........-
T Consensus 345 -------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 417 (458)
T 3nmz_A 345 -------TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417 (458)
T ss_dssp -------SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred -------cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0011345555556665554 3333222222 2467888889999999999999999999985332222111
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
.-...+|.|+..+.+ +++.++..|+++|.+++..-+
T Consensus 418 ~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 418 WDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTCCS
T ss_pred HHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCH
Confidence 234679999999988 889999999999999998753
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.86 E-value=3.5e-07 Score=104.30 Aligned_cols=360 Identities=9% Similarity=0.040 Sum_probs=215.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCc-----chhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh
Q 001307 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
..+++.|.+ .++.++..++.++..++... + ..+ ...+|.|.+++.++++..+..|..+|..++...++. +.
T Consensus 5 ~~lv~~L~s-~~~~~q~~A~~~L~~l~~~~-~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-k~ 80 (457)
T 1xm9_A 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQD-E-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-KL 80 (457)
T ss_dssp HHHHHHHHS-SCTHHHHHHHHHHHHHTSSC-S-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-HH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCC-h-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-HH
Confidence 356777887 58889999999999987532 1 223 356899999999999999999999999998642221 11
Q ss_pred hH--HHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH----hC--------CCH
Q 001307 181 HL--KHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL----NN--------GNE 245 (1103)
Q Consensus 181 ~~--~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l----~~--------~~~ 245 (1103)
.+ ...+|.|...|. ++ +..++..|+.+|.++... +.. ........+|.+++.+.... .+ .++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~-~~~-~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST-DEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS-SST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC-HHh-HHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 11 235778888888 65 899999999999999875 221 11122255666666652100 11 245
Q ss_pred HHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHhh-hccchhhhc----
Q 001307 246 ATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEA----ESLEEGTRHLAIEFVITLAEAR-ERAPGMMRK---- 314 (1103)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~----~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~~~---- 314 (1103)
++...++.+|..++.. +........ ..++.++.++.. .+.+..++..++..+..++... ...+.....
T Consensus 158 ~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 6777899999999876 432222221 455555555432 1123445666666655553100 000000000
Q ss_pred ---------------------------------------chh-hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCc
Q 001307 315 ---------------------------------------LPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1103)
Q Consensus 315 ---------------------------------------~~~-~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~ 354 (1103)
... +-...++.++..|....+ ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~----------------~~~ 300 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK----------------DAT 300 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC----------------HHH
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC----------------HHH
Confidence 000 001223333333321110 012
Q ss_pred hhhHHHHHHHHHHHcCCC--cc----h--HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc
Q 001307 355 YSVGQECLDRLAIALGGN--TI----V--PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1103)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~--~~----~--~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 426 (1103)
...+..+|..++..-+.. .+ + ...+|.+.+++.+++.+.|..|+.+|+.++....- ....-...++.++..
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~-~~~i~~~~i~~Lv~l 379 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVMGNQVFPEVTRL 379 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH-HHHHHHhhhHHHHHh
Confidence 223445555554321110 01 1 12456777888999999999999999999875321 111123577888888
Q ss_pred CCCCCh------hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-CcchHHHHHHHHHHHHhc
Q 001307 427 FRDPHP------RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 427 l~d~~~------~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~ 491 (1103)
|..+++ .+...++++|+.+...-......-.-...++.|...+.+ + +.+++..|++.|.+++.+
T Consensus 380 L~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~-~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS-SASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp TTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTSSS
T ss_pred ccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcC-CCcHHHHHHHHHHHHHHHcc
Confidence 887643 688899999999876543322111233688889998888 6 889999999999988754
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.78 E-value=2.1e-06 Score=77.72 Aligned_cols=214 Identities=14% Similarity=0.154 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccch
Q 001307 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310 (1103)
Q Consensus 231 ~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 310 (1103)
.+++.+...+.++-+.++..++..+..+++.+++...|.+..++-.+-. +..-......-..++.+++. .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k-----sEaIpltqeIa~a~G~la~i---~-- 101 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-----SEAIPLTQEIAKAFGQMAKE---K-- 101 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHHHHH---C--
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-----cccCchHHHHHHHHhHHHHh---C--
Confidence 5677777788887888999999999999999999999988887765432 11222223333556666662 2
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCC
Q 001307 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPE 390 (1103)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~ 390 (1103)
+..+.+++|.++....-.+ ....--..-+|..++...| ...+.+..-+..++.|++
T Consensus 102 -----Pe~v~~vVp~lfanyrigd-----------------~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd 157 (253)
T 2db0_A 102 -----PELVKSMIPVLFANYRIGD-----------------EKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKN 157 (253)
T ss_dssp -----HHHHHHHHHHHHHHSCCCS-----------------HHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSS
T ss_pred -----HHHHHhhHHHHHHHHhcCC-----------------ccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCC
Confidence 4677889999987554321 0122223457888887764 667777777888889999
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~ 470 (1103)
-..|-+|+..++.+.++..+.+.|+ +|.+...|.|.+..||..|..+|+.+++.-+ -+..++-..+..++
T Consensus 158 ~~Dkl~aLnFi~alGen~~~yv~Pf----LprL~aLL~D~deiVRaSaVEtL~~lA~~np------klRkii~~kl~e~~ 227 (253)
T 2db0_A 158 REDKLTALNFIEAMGENSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHLATLND------KLRKVVIKRLEELN 227 (253)
T ss_dssp HHHHHHHHHHHHTCCTTTHHHHGGG----HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhccCccccCcc----hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH------HHHHHHHHHHHHhc
Confidence 9999999999999998877654444 5566678999999999999999999997532 25567777788899
Q ss_pred CCCCcchHHHHHHHHHHHH
Q 001307 471 DFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 471 ~~~~~~v~~~a~~al~~l~ 489 (1103)
| ++..|+...-.+|..+.
T Consensus 228 D-~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 228 D-TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp C-SCHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHHH
Confidence 9 78888888888887765
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.76 E-value=4.9e-07 Score=91.28 Aligned_cols=191 Identities=12% Similarity=0.092 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 18 ~~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
..+++.+..++..+.++|..+|..|-..|..+.. ++. ++.|...+. ++++.+|..|+..|.+.-.
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~~-~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----------- 79 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ERA-VEPLIKALK-DEDAWVRRAAADALGQIGD----------- 79 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGG-HHHHHHHTT-CSCHHHHHHHHHHHHHHCC-----------
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--ccH-HHHHHHHHc-CCCHHHHHHHHHHHHhhCC-----------
Confidence 4578889999999999999999999999998765 444 588888886 5689999999999987532
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhh
Q 001307 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 177 (1103)
++ ....|++.|.+ +++.+|..++.+++.+. .++.++.|.+.+.++++.+|..++..|+.+...
T Consensus 80 ~~----~~~~L~~~l~~-~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 142 (211)
T 3ltm_A 80 ER----AVEPLIKALKD-EDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 142 (211)
T ss_dssp GG----GHHHHHHHTTC-SSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred HH----HHHHHHHHHcC-CCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----
Confidence 11 22455667776 68999999999988763 256889999999999999999999999987431
Q ss_pred chhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001307 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1103)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~ 257 (1103)
..++.+...+.++ ++.||..|+.+|+.+-. +..+..+...++++++.+|..+...|..
T Consensus 143 ------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 143 ------RAVEPLIKALKDE-DGWVRQSAADALGEIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2345677788887 99999999999987621 1344445555667899999999999987
Q ss_pred HHccc
Q 001307 258 LAGTE 262 (1103)
Q Consensus 258 l~~~~ 262 (1103)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 76544
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.75 E-value=2.8e-07 Score=96.91 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHh-cCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHh
Q 001307 391 WQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAG 467 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~-~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~ 467 (1103)
...|..|+..|..+++.... -.... ...++.++. .|.++++.||..|+|+||.++..-+ ..+... -...+|.|++
T Consensus 54 ~e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHH
Confidence 35778888888888875432 11111 235677888 9999999999999999999986532 221222 2368899999
Q ss_pred hccCCCCcchHHHHHHHHHHHHhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH-hhh
Q 001307 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAV 545 (1103)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~-~~i 545 (1103)
.|++.+++.++..|+++|.+++.+.++. ...+. ...++.|..++.+++..++..++.+|+.++....+...... ..+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~-~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAG-LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9885257889999999999999765432 11222 24678888899999999999999999999876333222222 358
Q ss_pred hHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 546 ~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
+|.|...+... +..+|..|+.+++.++..
T Consensus 211 i~~Lv~LL~~~----d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTE----HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSC----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC----ChhHHHHHHHHHHHHHhC
Confidence 88888888652 345888999999998865
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.74 E-value=2.1e-07 Score=93.13 Aligned_cols=188 Identities=20% Similarity=0.287 Sum_probs=136.0
Q ss_pred CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
....+...+.+.+.+++++|..|..|+.+|+.+.. +..++.+...+.|+++.+|..|+++|+.+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 34556677788889999999999999999987654 2356677778899999999999999988642
Q ss_pred hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001307 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1103)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~ 531 (1103)
+..++.+...+++ +++.||..|+.+|..+.. +..++.|...+.++++.+|..++.+++.+.
T Consensus 75 -------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 -------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2467788888998 899999999999988732 123456677788899999999999999885
Q ss_pred HhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhh
Q 001307 532 DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611 (1103)
Q Consensus 532 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~ 611 (1103)
. +..++.|...+.. ++..+|..|+.+++.++ .+. .++.+..+.++ .+..++.
T Consensus 136 ~----------~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~----~~~-------~~~~L~~~l~d---~~~~vr~ 187 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKD----EDGWVRQSAADALGEIG----GER-------VRAAMEKLAET---GTGFARK 187 (201)
T ss_dssp C----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC----SHH-------HHHHHHHHHHH---CCHHHHH
T ss_pred C----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhC----chh-------HHHHHHHHHhC---CCHHHHH
Confidence 3 2456666666642 34568888999988873 222 23333332221 2344777
Q ss_pred HHHHHHHHH
Q 001307 612 YMLQAWARL 620 (1103)
Q Consensus 612 ~~~~~~~~l 620 (1103)
.+..+++++
T Consensus 188 ~A~~aL~~l 196 (201)
T 3ltj_A 188 VAVNYLETH 196 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 777777654
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.74 E-value=2.9e-07 Score=96.78 Aligned_cols=152 Identities=24% Similarity=0.247 Sum_probs=117.3
Q ss_pred HHHHH-hhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 380 EQLPA-YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 380 ~~l~~-~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
|.+.. ++.+++...|..|+.+|+.++.+.+..-...+. ..++.++..++ ++++.+|..|+|+|+.++...++.. ..
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~-~~ 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL-LQ 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH-HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH-HH
Confidence 44445 788899999999999999999876643222222 46777777777 5689999999999999997665433 22
Q ss_pred hh-hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 457 FH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 457 ~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
+. ...+|.|+..|++ +++.++..|+++|.+++... ++. ..++ ...++.|+.++.+++..+++.++.+++.++..
T Consensus 163 ~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~-~~~-~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGH-PEH-KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHC-GGG-HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCC-hHH-HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 32 4689999999998 89999999999999999873 222 1222 24778899999999999999999999999976
Q ss_pred hh
Q 001307 534 SQ 535 (1103)
Q Consensus 534 ~~ 535 (1103)
..
T Consensus 240 ~~ 241 (296)
T 1xqr_A 240 FP 241 (296)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.74 E-value=1.1e-07 Score=96.26 Aligned_cols=186 Identities=20% Similarity=0.266 Sum_probs=132.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
..++.+...+++++|..|..++.+|+.+.. +..++.+...+.|+++.||..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 344556667788999999999999987754 2456777788899999999999999988752
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
+..++.+.+.+++ +++.||..|+.+|..+.. +..++.|...+.++++.+|..++.+++.+..
T Consensus 80 --~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp --GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred --HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 2467788888898 899999999999988732 1234667778889999999999999998843
Q ss_pred hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHH
Q 001307 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQA 616 (1103)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~ 616 (1103)
+..++.|...+.. .+..+|..|+.+++.+.. +..++.+..+.++ .+..+|..+..+
T Consensus 142 ------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d---~~~~vr~~A~~a 197 (211)
T 3ltm_A 142 ------ERAVEPLIKALKD----EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET---GTGFARKVAVNY 197 (211)
T ss_dssp ------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH---CCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 2356666666632 345688889999887732 2233333333221 234578888877
Q ss_pred HHHHHhH
Q 001307 617 WARLCKC 623 (1103)
Q Consensus 617 ~~~l~~~ 623 (1103)
++.+...
T Consensus 198 L~~~~~~ 204 (211)
T 3ltm_A 198 LETHKSF 204 (211)
T ss_dssp HHC----
T ss_pred HHhcCCC
Confidence 7766544
No 80
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.68 E-value=1.1e-07 Score=96.07 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=118.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
.++.+.+.+.++++..|..|+.+|+.++.+..+.....+ ...++.++..++++++.+|..|+++|+.++.........-
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455666777888999999999999999876654333322 2478889999999999999999999999997544332122
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~ 532 (1103)
....++|.+++.+.+ +++.++..|+++|.+++...+.....-.-...++.|..++.+.++.+++.|..+++.++.
T Consensus 135 ~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 135 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 345789999999998 889999999999999987543221111122467889999999999999999999998863
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.67 E-value=1.2e-06 Score=87.53 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
-++.....++..+.++|..+|..|-..|..+.. +.. ++.|...+. +.++.+|..|+..|.+.-. +
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~~-~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-----------~ 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ERA-VEPLIKALK-DEDAWVRRAAADALGQIGD-----------E 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGG-HHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------G
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--hhH-HHHHHHHHc-CCCHHHHHHHHHHHHhhCC-----------H
Confidence 456778899999999999999999999998765 333 588888885 6789999999999987521 1
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
+ ....|++.|.+ +++.+|..++.+++.+. -++.++.+...+.++++.+|..++..++.+..
T Consensus 76 ~----~~~~L~~~l~d-~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 136 (201)
T 3ltj_A 76 R----AVEPLIKALKD-EDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 136 (201)
T ss_dssp G----GHHHHHHHTTC-SSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------
T ss_pred H----HHHHHHHHHcC-CCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------
Confidence 1 22455667776 69999999999988763 25678899999999999999999999998753
Q ss_pred hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001307 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1103)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1103)
...++.+...+.++ ++.||..|+.+++.+-. . ..+..+...++++++.+|..+...|..+
T Consensus 137 ----~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~-----------~----~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------E----RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------H----HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------h----hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 12445677788887 99999999999987721 1 2334444555678999999999888765
Q ss_pred H
Q 001307 259 A 259 (1103)
Q Consensus 259 ~ 259 (1103)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 3
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.58 E-value=3.4e-05 Score=69.94 Aligned_cols=215 Identities=15% Similarity=0.172 Sum_probs=158.2
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccC
Q 001307 272 DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGE 351 (1103)
Q Consensus 272 ~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~ 351 (1103)
.++.-++..++ |.-..++..|+..+..+++. .| .....++..++.++...+.-
T Consensus 32 ~~l~~lI~~LD--DDlwtV~kNAl~vi~~i~~~---~~-------el~epl~~kL~vm~~ksEaI--------------- 84 (253)
T 2db0_A 32 SVLKKLIELLD--DDLWTVVKNAISIIMVIAKT---RE-------DLYEPMLKKLFSLLKKSEAI--------------- 84 (253)
T ss_dssp HHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTT---CG-------GGHHHHHHHHHHHHHHCCSH---------------
T ss_pred HHHHHHHHHhc--cHHHHHHHhHHHHHHHHHHH---hH-------HHHHHHHHHHHHHHhhcccC---------------
Confidence 34444445443 23356899999999999883 33 34556666666655543211
Q ss_pred CCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCC
Q 001307 352 SSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH 431 (1103)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 431 (1103)
..-......++.++..-| +.+..+.|.+.....-.+.+.|-.--++|+.++...|.. ++.++.-+...+.+++
T Consensus 85 -pltqeIa~a~G~la~i~P--e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd 157 (253)
T 2db0_A 85 -PLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKN 157 (253)
T ss_dssp -HHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSS
T ss_pred -chHHHHHHHHhHHHHhCH--HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCC
Confidence 011223467788877654 566667788877777789999999999999999988864 4556666667788999
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHH
Q 001307 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1103)
Q Consensus 432 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~ 511 (1103)
..-|.+|+..++.+++.- ..|....+|.++..|.| .+.-||..|..+|..+++.- |-+..++..-+.-
T Consensus 158 ~~Dkl~aLnFi~alGen~-----~~yv~PfLprL~aLL~D-~deiVRaSaVEtL~~lA~~n------pklRkii~~kl~e 225 (253)
T 2db0_A 158 REDKLTALNFIEAMGENS-----FKYVNPFLPRIINLLHD-GDEIVRASAVEALVHLATLN------DKLRKVVIKRLEE 225 (253)
T ss_dssp HHHHHHHHHHHHTCCTTT-----HHHHGGGHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSC------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccC-----ccccCcchHHHHHHHcC-cchhhhHHHHHHHHHHHHcC------HHHHHHHHHHHHH
Confidence 989999999999887653 36888999999999999 89999999999999997643 4466677777777
Q ss_pred hhcCChhHHHHHHHHHHHHHH
Q 001307 512 LQNGKQMVQEGALTALASVAD 532 (1103)
Q Consensus 512 l~~~~~~v~~~al~al~~l~~ 532 (1103)
+++.+..++..+-.+++.+.-
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 888888888888888888764
No 83
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.57 E-value=7.7e-05 Score=89.31 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH-HHHhhccCCCCcchHHHHHHHHHHHHhcCCccc
Q 001307 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1103)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1103)
+++|.+ ..|+++++..|..||++|+.++..-...- .-....++. .+...|.| ++..||..|+++|.+++..-+++.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~-l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRK-LLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHH-HHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchH
Confidence 345544 45889999999999999999997432211 122344554 45667888 899999999999999987766542
Q ss_pred ccC-chHHHHHHHHHHhh-------cC-------C-------hhHHHHHHHHHHHHHHhhhhhhHhhH-hhhhHHHHHHH
Q 001307 497 LTP-YLDGIVSKLLVLLQ-------NG-------K-------QMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAIL 553 (1103)
Q Consensus 497 l~~-~l~~ll~~L~~~l~-------~~-------~-------~~v~~~al~al~~l~~~~~~~~~~~~-~~i~~~l~~~l 553 (1103)
... +-..+++.|...+. .. . ..+.+.++.++..++....+.+.... ...++.++..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 211 11123333333322 11 0 12345567777777766555443322 35666666666
Q ss_pred hhcCCcccchhhhHHHHHHHHHHH
Q 001307 554 VNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 554 ~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
... +.....++..|.+|+..+..
T Consensus 192 ~~~-~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 192 ISA-DIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHH-CCSCHHHHHHHHHHHHHHHT
T ss_pred Hhc-CCCcHHHHHHHHHHHHHHhc
Confidence 442 22234578888999988864
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=5.3e-06 Score=83.81 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=146.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchh---HHhhh-
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD---LQNQF- 457 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~---~~~~~- 457 (1103)
+...+-+.+|+.|.+|+..|....+..++.+...++-+++.+.-.+.|+|+.|-..++..|..+...+... + ..|
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~-~~~e 129 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM-SQEE 129 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc-hHHH
Confidence 34455678999999999999888877777777777777887776778999999999999999887766432 3 233
Q ss_pred hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001307 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1103)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~ 537 (1103)
...++|.++..+.| +...||..+-..+..+...++++ .+++.+...+.+.+...|+..+..++.+....|..
T Consensus 130 a~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999 88899999999998887655433 35566777888899999999999999999888765
Q ss_pred hHhhHhhhh---HHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhH
Q 001307 538 FQKYYDAVM---PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1103)
Q Consensus 538 ~~~~~~~i~---~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~ 588 (1103)
... .+ |.+...+. +.+..+|..|+.|+..+-..+| +.+..++
T Consensus 202 ~~~----~l~~~~~ia~ll~----D~d~~VR~aAl~~lve~y~~~G-d~v~k~l 246 (266)
T 2of3_A 202 PLK----SLSVEKTVAPFVG----DKDVNVRNAAINVLVACFKFEG-DQMWKAA 246 (266)
T ss_dssp GGG----GGCHHHHHGGGGG----CSSHHHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred ccc----cccchHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 322 34 55544443 3456799999999999999999 6665554
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.2e-06 Score=90.51 Aligned_cols=188 Identities=13% Similarity=0.159 Sum_probs=141.2
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHH-----HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchh----
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVM-----VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD---- 452 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~-----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~---- 452 (1103)
+.+.+.|.+|+.|..|+..+..+....+... ...+..+.+.+...+.|.|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4577889999999999999988776654321 1223445667778899999999999999999998765432
Q ss_pred -HHhhhhhhhHHHHHh-hccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001307 453 -LQNQFHPQVLPALAG-AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1103)
Q Consensus 453 -~~~~~~~~il~~l~~-~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l 530 (1103)
....+...++|.++. ++.+ +.+.++..+..++..+++... ....+++.+...+.+.++.++..++..+..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDT------SITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSS------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 113456788888886 4888 788899999999988887543 2345567777888999999999999999999
Q ss_pred HHhhhhh---hHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhC
Q 001307 531 ADSSQEH---FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 531 ~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1103)
....|.. ..+.++.+++.+...+.. .+..+|..|+.+++.+-+.+|
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d----~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGH----GDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTC----SSHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhC
Confidence 8876643 235677788888887743 345689999999999988888
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.40 E-value=0.00062 Score=80.98 Aligned_cols=324 Identities=14% Similarity=0.062 Sum_probs=190.3
Q ss_pred HHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHhcCCcchHhHH
Q 001307 149 FQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT---NSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1103)
Q Consensus 149 ~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 225 (1103)
..|+.......+-.|+..+|.|.....+. -+..+.+.+. ++ ++.+|..|+-+++-+-.... .
T Consensus 364 ~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~-------gl~~L~~yL~~~~s~-~~~ik~GAllaLGli~ag~~----~--- 428 (963)
T 4ady_A 364 LPWLGKAQNWAKFTATASLGVIHKGNLLE-------GKKVMAPYLPGSRAS-SRFIKGGSLYGLGLIYAGFG----R--- 428 (963)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHHTSSCTTT-------HHHHHTTTSTTSCCS-CHHHHHHHHHHHHHHTTTTT----H---
T ss_pred hhhhhccchHHHHHHHHHhhhhccCchHH-------HHHHHHHhccccCCC-cHHHHHHHHHHHHHhcCCCc----H---
Confidence 34554444446778888888887653322 2334444554 43 78999999999987654321 1
Q ss_pred HhhHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHc-cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 001307 226 QDLLPLMMRTLTESLNNGN--------EATAQEALELLIELAG-TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIE 296 (1103)
Q Consensus 226 ~~~ip~ll~~l~~~l~~~~--------~~~~~~~~~~l~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~ 296 (1103)
+ .+..|...+.+.+ +.++..++..|+-..- ...+ ++++.+..++.+ .+..+|..|..
T Consensus 429 -~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-------ev~e~L~~~L~d--d~~~~~~~Aal 494 (963)
T 4ady_A 429 -D----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-------EVYEALKEVLYN--DSATSGEAAAL 494 (963)
T ss_dssp -H----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHT--CCHHHHHHHHH
T ss_pred -H----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhc--CCHHHHHHHHH
Confidence 1 2233333333323 5677777777775432 1111 233334444432 23455655554
Q ss_pred HHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchH
Q 001307 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP 376 (1103)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 376 (1103)
.++.+.-. ......+..++..+.. .. ....++.+..+|+.+ .+|.+...+
T Consensus 495 ALGli~vG--------Tgn~~ai~~LL~~~~e----~~----------------~e~vrR~aalgLGll--~~g~~e~~~ 544 (963)
T 4ady_A 495 GMGLCMLG--------TGKPEAIHDMFTYSQE----TQ----------------HGNITRGLAVGLALI--NYGRQELAD 544 (963)
T ss_dssp HHHHHHTT--------CCCHHHHHHHHHHHHH----CS----------------CHHHHHHHHHHHHHH--TTTCGGGGH
T ss_pred HHhhhhcc--------cCCHHHHHHHHHHHhc----cC----------------cHHHHHHHHHHHHhh--hCCChHHHH
Confidence 44433210 0122344555554432 11 112444555555554 355556666
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
.++..+. .+.+|..|+++..+++...-+.+. ...++.++.. +..|++..||.+|..+||.+.-.-+
T Consensus 545 ~li~~L~---~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~------ 610 (963)
T 4ady_A 545 DLITKML---ASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDY------ 610 (963)
T ss_dssp HHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSC------
T ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCH------
Confidence 6655443 468899999999988865444332 1122233333 2357788899999999998753311
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
..++.++..+.+..++.||..++.+|+.++..-+ ...+++.|..+..+++..||..|+.++|.+.....+
T Consensus 611 ---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 611 ---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp ---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 3355555544433789999999999999874433 256677777888899999999999999999865555
Q ss_pred hhHhhHhhhhHHHHHHHhh
Q 001307 537 HFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~ 555 (1103)
...|.+..+...|...+.+
T Consensus 681 a~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 681 KLNPQVADINKNFLSVITN 699 (963)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 5455666666666666543
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.39 E-value=0.00046 Score=82.06 Aligned_cols=328 Identities=13% Similarity=0.066 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc---CCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC
Q 001307 121 SKKLCDTVSELASNILPENGWPELLPFMFQCVS---SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1103)
Q Consensus 121 r~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~---s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~ 197 (1103)
+-.++..+|.|-. +.+.+-+..|...+. ++++..|.+|+..+|.+....... .+..+...+.++.
T Consensus 375 k~sA~aSLGlIh~-----g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL~~~L~~~~ 442 (963)
T 4ady_A 375 KFTATASLGVIHK-----GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHTS-----SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhcc-----CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHcCcc
Confidence 3344445554422 233466777777776 567889999999999988765432 3344445554431
Q ss_pred -------ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--HccchHHHHH
Q 001307 198 -------NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL--AGTEPRFLRR 268 (1103)
Q Consensus 198 -------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l--~~~~~~~~~~ 268 (1103)
...+|..|+-.|+-+.-.-. .. .+++.|...+.+.+...+..+...++-+ .......+
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~---~e--------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai-- 509 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSA---NI--------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI-- 509 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCC---CH--------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH--
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCC---CH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH--
Confidence 26788888888876543211 11 2333344444455555555555555544 22223322
Q ss_pred hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001307 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1103)
Q Consensus 269 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed 348 (1103)
..++..+.. +.++.+|..+...|..+.-. . +...+.++..+.. ..
T Consensus 510 --~~LL~~~~e-----~~~e~vrR~aalgLGll~~g---~-------~e~~~~li~~L~~----~~-------------- 554 (963)
T 4ady_A 510 --HDMFTYSQE-----TQHGNITRGLAVGLALINYG---R-------QELADDLITKMLA----SD-------------- 554 (963)
T ss_dssp --HHHHHHHHH-----CSCHHHHHHHHHHHHHHTTT---C-------GGGGHHHHHHHHH----CS--------------
T ss_pred --HHHHHHHhc-----cCcHHHHHHHHHHHHhhhCC---C-------hHHHHHHHHHHHh----CC--------------
Confidence 233333321 23567777776666654321 1 1233444444321 10
Q ss_pred ccCCCchhhHHHHHHHHHHHcCCCcchHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-c
Q 001307 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASE-QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-S 426 (1103)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~ 426 (1103)
+...+..+.-+++.-...-|. +..++ .+.....+.+..+|.+|..+||.+.-+-+ +.++.++. .
T Consensus 555 --dp~vRygaa~alglAyaGTGn----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L 620 (963)
T 4ady_A 555 --ESLLRYGGAFTIALAYAGTGN----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLL 620 (963)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTG
T ss_pred --CHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHH
Confidence 111122222222211111222 22222 33444456778899999999998865432 12333333 3
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHH
Q 001307 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1103)
Q Consensus 427 l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~ 506 (1103)
.++.++.||+.|..+||.++..-+ ...++..|.+..+| ++..||..|+.+|+.+...... ...|.+..++.
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~-------~~~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnn-a~~~rva~~l~ 691 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKG-------LQSAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTE-KLNPQVADINK 691 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSC-------CHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCT-TTCTTHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCC-------cHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCcc-ccchHHHHHHH
Confidence 457899999999999999874432 24577777777888 8999999999999999876553 35678899999
Q ss_pred HHHHHhhc--CChhHHHHHHHHHHHHH
Q 001307 507 KLLVLLQN--GKQMVQEGALTALASVA 531 (1103)
Q Consensus 507 ~L~~~l~~--~~~~v~~~al~al~~l~ 531 (1103)
.|.+...+ .++..+-.+..+.|.+-
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 98888875 34667777766666654
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.34 E-value=5.1e-05 Score=82.05 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=154.6
Q ss_pred hHHHHHHHHHHHhhhhhh--hhchh--hHHHHHHHHHHh---h---CCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001307 158 KLQESAFLIFAQLSQYIG--DTLTP--HLKHLHAVFLNC---L---TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1103)
Q Consensus 158 ~~r~~al~~l~~l~~~~~--~~l~~--~~~~l~~~l~~~---l---~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1103)
.....|+.+|+.++.... ..+.. -++.++.++... . .+..++.+|..|..+|.++...- ...+..+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~--~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 455567778887775411 11111 123333333211 0 11124678999999999987432 111211210
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhh
Q 001307 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR 305 (1103)
Q Consensus 228 ~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 305 (1103)
....++.|...+.+++++++..++.+|..++.......+..+. ..++.++.++.. ..+.+++..|...+..++..
T Consensus 125 -~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~- 201 (354)
T 3nmw_A 125 -MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLSAH- 201 (354)
T ss_dssp -CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTT-
T ss_pred -cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcc-
Confidence 1234555556667889999999999999998642111222211 345555554321 23567788888888777651
Q ss_pred hccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHH
Q 001307 306 ERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1103)
Q Consensus 306 ~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (1103)
.+.. + ..+. ...+|.++..+....+
T Consensus 202 --~~~n-k--~~i~~~~Gai~~Lv~lL~~~~~------------------------------------------------ 228 (354)
T 3nmw_A 202 --CTEN-K--ADICAVDGALAFLVGTLTYRSQ------------------------------------------------ 228 (354)
T ss_dssp --CHHH-H--HHHHHSTTHHHHHHHHTTCCCS------------------------------------------------
T ss_pred --Chhh-h--HHHHHhcCcHHHHHHHhccCCC------------------------------------------------
Confidence 1100 0 0111 2234444444322110
Q ss_pred HhhcCCChHHHHHHHHHHHHHHh---hcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001307 384 AYLAAPEWQKHHAALIALAQIAE---GCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1103)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~---~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (1103)
+.++..++.|..+|..++. +..+...... ...++.++..|.+++..++..|+++|+.++.........-.-.
T Consensus 229 ----~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~ 304 (354)
T 3nmw_A 229 ----TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304 (354)
T ss_dssp ----SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred ----cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 0011344555555555554 3333222111 1367888889999999999999999999985332222111234
Q ss_pred hhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
..+|.|+..+.+ ++++++..|+++|.+++...+
T Consensus 305 G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 305 GAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp THHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCH
Confidence 679999999998 889999999999999998754
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.30 E-value=2.1e-05 Score=85.13 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=146.6
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhH---HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHH
Q 001307 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFI---NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1103)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~ 363 (1103)
+..++..|...|..++... .. ....+ ..++|.++..+...+ ......+..+|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~---~~----~k~~i~~~~GaIp~LV~LL~s~~-----------------~~v~~~A~~aL~ 152 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGD---VA----NKATLCSMKGCMRALVAQLKSES-----------------EDLQQVIASVLR 152 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSC---HH----HHHHHHHCHHHHHHHHHGGGCSC-----------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC---HH----HHHHHHHcCCcHHHHHHHHCCCC-----------------HHHHHHHHHHHH
Confidence 4568889999999988631 11 11122 356888888875321 113445666777
Q ss_pred HHHHHcCC---Ccch-HHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCCCCh----
Q 001307 364 RLAIALGG---NTIV-PVASEQLPAY-LAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHP---- 432 (1103)
Q Consensus 364 ~l~~~~~~---~~~~-~~l~~~l~~~-l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~---- 432 (1103)
.|+..-.. ..+. .-.+|.+.+. ..+.+...++.++.+|..++..+.+.-.... ...++.+...+.++++
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~ 232 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccH
Confidence 66642100 1111 1134555554 4567888999999999999875544222222 3578888888887654
Q ss_pred hHHHHHHHHHHHhhhhh--chhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCch--HHHHHH
Q 001307 433 RVRWAAINAIGQLSTDL--GPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSK 507 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~--~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~ll~~ 507 (1103)
.++..|+++|..++..+ .++..... -...+|.|+..|.+ ++..++..|+++|.+++...... ...+ ...++.
T Consensus 233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~--~~~i~~~G~i~~ 309 (354)
T 3nmw_A 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKD--QEALWDMGAVSM 309 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHH--HHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCHHH--HHHHHHCCCHHH
Confidence 48999999999998631 22221111 23578999999998 88899999999999997542211 1122 245788
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 508 LLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 508 L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
|..++.+.+..+|+.|..++..++..-+.
T Consensus 310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 310 LKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999999999876443
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.28 E-value=2.2e-05 Score=74.88 Aligned_cols=214 Identities=14% Similarity=0.186 Sum_probs=154.8
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001307 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1103)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1103)
+|+.|.+.-.+. .-+..+..+...++|.++.++..++.+|+.+.+..+..........+++.++..+
T Consensus 18 sWkiK~a~ela~-------------~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll 84 (265)
T 3b2a_A 18 SWQILDAVSLAL-------------EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL 84 (265)
T ss_dssp TTCHHHHHHHHH-------------HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHH-------------hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 599988642221 1134667778889999999999999999999998776666677899999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHH
Q 001307 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1103)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l 549 (1103)
.+ ++.+|...|..++..+.++.+.. ..-+..++..+...+.+++.-.+..+...+|.+ . .....+.++.++
T Consensus 85 k~-~dEkval~A~r~L~~LLe~vpL~--~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l 155 (265)
T 3b2a_A 85 SQ-ENEKVTIKALRALGYLVKDVPMG--SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYI 155 (265)
T ss_dssp CS-TTHHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHH
T ss_pred hc-cchhHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-----cccchHHHHHHH
Confidence 98 89999999999999999988743 356788899999999999999999999999988 1 222456788888
Q ss_pred HHHHhhcCCcccchhhhHHHHHHHHHHHhhC-hhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCc
Q 001307 550 KAILVNATDKSNRMLRAKSMECISLVGMAVG-KDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (1103)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~-~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 628 (1103)
..++ .. .+..+++.++.++..++..-+ ++.+.+.+.++-.++ ++ .|.++++.++.++..+...
T Consensus 156 ~sLl-~S---kd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL----~~---eD~~l~e~aLd~Le~ils~----- 219 (265)
T 3b2a_A 156 NELV-VS---PDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLL----QN---DNEFIVELALDVLEKALSF----- 219 (265)
T ss_dssp HHHH-TC---SSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHH----TC---SCHHHHHHHHHHHHHHTTS-----
T ss_pred HHHH-hC---CChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHHcC-----
Confidence 8888 32 345688889999888886554 222333333332222 21 2445777877777766544
Q ss_pred ccchhhhhHHHHHh
Q 001307 629 LPYMSVVMPPLLQS 642 (1103)
Q Consensus 629 ~p~l~~i~~~ll~~ 642 (1103)
|..+.+++-+...
T Consensus 220 -pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 220 -PLLENVKIELLKI 232 (265)
T ss_dssp -CCCSCCHHHHHHH
T ss_pred -cccHhHHHHHHHH
Confidence 3344455544433
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.24 E-value=1.6e-05 Score=84.66 Aligned_cols=301 Identities=12% Similarity=0.118 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHhcc-cCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCC
Q 001307 119 SISKKLCDTVSELASNI-LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1103)
Q Consensus 119 ~vr~~~~~~i~~ia~~~-~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~ 197 (1103)
..|+.+..+|..+.... ++......+++.+..++++++...|..+...+..+++. ++.. + -+...+.+-++++
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~---i-Lv~Nsl~kDl~~~- 116 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV---I-IVTSSLTKDMTGK- 116 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG---G-GGHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH---H-HHHHHHHhhcCCC-
Confidence 34556666666554421 11112456777788899999999999998888887776 2221 1 3456777888887
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHH
Q 001307 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1103)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 277 (1103)
++-+|-.|+++++.+... ++++.+.+.+.+++.+.++-+|+.|+-+...+....|+.....+..+-
T Consensus 117 N~~iR~lALRtL~~I~~~-----------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~--- 182 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDS-----------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQ--- 182 (355)
T ss_dssp CHHHHHHHHHHHHHHCCT-----------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHH---
T ss_pred cHhHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---
Confidence 999999999999988642 345577778888999999999999999999999988887665444333
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh
Q 001307 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1103)
Q Consensus 278 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~ 357 (1103)
..+. +.+..+...|+.++..+.+. . ...+.++++.+.. .. ..++|..
T Consensus 183 -~ll~--d~n~~V~~~Al~lL~ei~~~---d-------~~a~~kLv~~l~~----~~----------------l~~~~~q 229 (355)
T 3tjz_B 183 -EAAS--SDNIMVQYHALGLLYHVRKN---D-------RLAVSKMISKFTR----HG----------------LKSPFAY 229 (355)
T ss_dssp -HHTT--CSSHHHHHHHHHHHHHHHTT---C-------HHHHHHHHHHHHS----SC----------------CSCHHHH
T ss_pred -HHhc--CCCccHHHHHHHHHHHHHhh---c-------hHHHHHHHHHHhc----CC----------------CcChHHH
Confidence 3333 34567777788777777652 1 1233444444321 10 0012211
Q ss_pred HHHHHHHHHHHcCCC---cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001307 358 GQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 358 a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1103)
...+..+. .++++ .....+++.+...+++.+.-+.+.|..++-.+..... ..+...+..+...+.++++.+
T Consensus 230 -~~llr~l~-~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~----~~~~~a~~~L~~fLss~d~ni 303 (355)
T 3tjz_B 230 -CMMIRVAS-RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA----KELAPAVSVLQLFCSSPKAAL 303 (355)
T ss_dssp -HHHHHHHT-CC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSS
T ss_pred -HHHHHHHH-HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHcCCCchH
Confidence 12233222 22211 2234566777778888888888888888876644221 122333445555677888999
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHH
Q 001307 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASA 484 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~a 484 (1103)
|..|+..|..+....+.. +...-..+..+++| ++..++.-|..+
T Consensus 304 ryvaLr~L~~l~~~~P~~-----v~~~n~~ie~li~d-~n~sI~t~Aitt 347 (355)
T 3tjz_B 304 RYAAVRTLNKVAMKHPSA-----VTACNLDLENLVTD-ANRSIATLAITT 347 (355)
T ss_dssp HHHHHHCC------------------------------------------
T ss_pred HHHHHHHHHHHHHHCcHH-----HHHHHHHHHHHccC-CcHhHHHHHHHH
Confidence 999999999988765433 23445556677788 766555444443
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.19 E-value=3.3e-05 Score=78.05 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=126.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHH---HHHh-HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV---MVKN-LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~---~~~~-l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (1103)
+++++.-.+.+.+..+-..++..+..+.....+. +..+ ...++|.++..+.|+...||..+-.++..+....++.
T Consensus 88 l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~- 166 (266)
T 2of3_A 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL- 166 (266)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-
Confidence 4555554555778888888888888876654431 2222 4678999999999999999999999998887665542
Q ss_pred HhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHH---HHHHHHhhcCChhHHHHHHHHHHHH
Q 001307 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIV---SKLLVLLQNGKQMVQEGALTALASV 530 (1103)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll---~~L~~~l~~~~~~v~~~al~al~~l 530 (1103)
.+++.++.++.+ .++++|..++..+..+++..|.. | ...+ +.+.+++.+++..||+.|+.++..+
T Consensus 167 ------~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 167 ------KMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp ------HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 477888889998 89999999999999999988755 1 2235 7788899999999999999999999
Q ss_pred HHhhhhhhHhhHhhhhHHHHHHH
Q 001307 531 ADSSQEHFQKYYDAVMPFLKAIL 553 (1103)
Q Consensus 531 ~~~~~~~~~~~~~~i~~~l~~~l 553 (1103)
....|+.+..|+..+-+.-.+.+
T Consensus 235 y~~~Gd~v~k~lg~L~~~~~~~l 257 (266)
T 2of3_A 235 FKFEGDQMWKAAGRMADKDKSLV 257 (266)
T ss_dssp HHHHTTHHHHHHCCCCHHHHHHH
T ss_pred HHHhhHHHHHHHhcCCHHHHHHH
Confidence 99999988777765544444443
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.3e-05 Score=81.39 Aligned_cols=168 Identities=11% Similarity=0.180 Sum_probs=126.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcH------HHHHHhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCA------KVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~------~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
.+.+...+.+.|..+...++.++..++..+. .........+++.++. ++.|..+.+|..+..++..+++...
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~- 135 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT- 135 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-
Confidence 4556677889999999999999999887543 2344567778887775 5899999999999999888775433
Q ss_pred hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc--cCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001307 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL--TPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1103)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l--~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~ 529 (1103)
....+++.+...+++ .+|+++..++.+|..++..++...+ .+.++.+++.+.+++.+.++.||..|..+++.
T Consensus 136 -----~~~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 136 -----SITQSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp -----SSHHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 234567888888998 8999999999999999988776543 24577788889999999999999999999999
Q ss_pred HHHhhhhhhH----hhHhhhhHHHHHHH
Q 001307 530 VADSSQEHFQ----KYYDAVMPFLKAIL 553 (1103)
Q Consensus 530 l~~~~~~~~~----~~~~~i~~~l~~~l 553 (1103)
+...+|.... .+++.+=|...+-+
T Consensus 210 ly~~~G~~~~~~~~~~l~~lkp~~~k~l 237 (278)
T 4ffb_C 210 IYKVTGNNSDLLEEILFKKLKPIQVKDL 237 (278)
T ss_dssp HHTC-----------CTTSSCHHHHHHH
T ss_pred HHHHhCcchhhhhhhhhhcCCHHHHHHH
Confidence 9998886532 34444444444443
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=0.00032 Score=67.12 Aligned_cols=184 Identities=12% Similarity=0.156 Sum_probs=144.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHH-HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM-VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (1103)
.+..+..++.+.|...+..++.++..+....++.. ...+..+++.++..+.+++.+|--.|..||+.+.+..+.. ..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~--~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG--SK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC--HH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC--HH
Confidence 34455677788999999999999999988865433 3677889999999999999999999999999999887644 35
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~ 536 (1103)
.+..+...+...+.. +++-++..+...++.+ + +....+.+++.+++++.+.++.++..++.++-.++...++
T Consensus 112 ~y~Kl~~aL~dlik~-~~~il~~eaae~Lgkl----k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFLKAAKTLVSLLES-PDDMMRIETIDVLSKL----Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHC----C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHHHHhCcC----C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 677888889888887 8888999999999887 2 2345678889999999999999999999999999987653
Q ss_pred hhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHH
Q 001307 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1103)
. ..+..++.-+...++. ++..++..|+..+-.+..
T Consensus 184 ~--~i~~~I~~eI~elL~~----eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 184 S--GHLTLILDEIPSLLQN----DNEFIVELALDVLEKALS 218 (265)
T ss_dssp C--CCGGGTTTTHHHHHTC----SCHHHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHc
Confidence 2 2344455555555643 245678888887766653
No 95
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.12 E-value=0.0017 Score=79.55 Aligned_cols=157 Identities=7% Similarity=0.001 Sum_probs=89.5
Q ss_pred HHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH----HHHHhHHHHHHHHHhcCC-CCChhHHHHHHHH
Q 001307 367 IALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK----VMVKNLEQVLSMVLNSFR-DPHPRVRWAAINA 441 (1103)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~ 441 (1103)
+.+| +..++.+.+.+..+..+.+-....+|...++.+..|... .....-.-+.|.+...+. +-++.....=..+
T Consensus 499 rn~~-~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~ 577 (997)
T 1vsy_5 499 SGFC-ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTL 577 (997)
T ss_dssp TTTC-CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHH
T ss_pred cccc-hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 4566 788999999999988888877777888888888776442 222333345555555555 3444333322222
Q ss_pred HHHhhhhhchhHHhhhhhhhHHHHHh--h---ccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCC
Q 001307 442 IGQLSTDLGPDLQNQFHPQVLPALAG--A---MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1103)
Q Consensus 442 L~~l~~~~~~~~~~~~~~~il~~l~~--~---l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~ 516 (1103)
+..+.....+ .-+..++..++. . .+. .+.-........|..++...+-. + +....++..++ ++++.
T Consensus 578 i~~~~~~~Dp----rR~~~L~e~l~~~~~~l~~~~-~ssf~~~~rl~ll~~~l~~~~wr-~-~~~~~~l~~~~--l~h~y 648 (997)
T 1vsy_5 578 AWWLPAVVDL----RRSKTFFCHFINADGMFDRES-DAATHQTSKIYMLRSILMSMEFR-A-PDVGKLFDELV--FDHPY 648 (997)
T ss_dssp HHHHHHHSCG----GGCHHHHHHHTCCCCCCCCCS-SCCCCCCSSHHHHHHHHHHHTTS-S-CCCHHHHHHCC--SCCSC
T ss_pred HHHHhcCCCh----hhhHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHhccc-c-ccHHHHHHHHH--hCCCh
Confidence 2222222222 234456665522 1 111 22222233445555554444432 2 23566777666 88888
Q ss_pred hhHHHHHHHHHHHHHHh
Q 001307 517 QMVQEGALTALASVADS 533 (1103)
Q Consensus 517 ~~v~~~al~al~~l~~~ 533 (1103)
..||+.+-..++.+...
T Consensus 649 ~~VRe~Ig~~L~~i~~~ 665 (997)
T 1vsy_5 649 DQVRQAVAKLLTTLVQN 665 (997)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999888888777654
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=4e-07 Score=83.40 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=86.7
Q ss_pred CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
....+...+.+...+++++|..|..|+.+|+.+... . ++.+...++|+++.||..|+++|+.+..
T Consensus 7 ~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 7 HHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp --------------CCSSCCCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred cccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 344555667777888899999999988888765332 1 3677788899999999999999988752
Q ss_pred hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001307 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1103)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~ 529 (1103)
+..++.|...++| +++.||..|+++|..+.. +..++.|...++++++.+|..+..+++.
T Consensus 72 -------~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -------ERAVEPLIKLLED-DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2356777777788 889999999999988741 3456777788888889999998888764
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.00 E-value=0.00013 Score=77.74 Aligned_cols=288 Identities=14% Similarity=0.121 Sum_probs=145.5
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhh
Q 001307 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1103)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 173 (1103)
..++...-..+.-.+++.+.+ ++..+|+..=-.+..+++. + ...--..+.+.+-++++++-.|-.|++.++.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~--~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~ 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQS-NDPTLRRMCYLTIKEMSCI--A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGC-CCHHHHHHHHHHHHHHTTT--S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT
T ss_pred CCCchhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH
Confidence 345666666677777778887 6888998766666665553 3 23335678888889999999999999999988753
Q ss_pred hhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 001307 174 IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALE 253 (1103)
Q Consensus 174 ~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~ 253 (1103)
. .++.+.+.+.+++.|. ++.||..|+-+...++... + +.+..+++.+.+.+.+.++.+...++.
T Consensus 135 ---~---m~~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~-----p----e~v~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 ---T---MLQAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCS-----F----DVVKRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp ---T---THHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTC-----H----HHHHTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred ---H---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccC-----H----HHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 2 4667788899999997 9999999999988776542 2 233456677777888889999999999
Q ss_pred HHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCC
Q 001307 254 LLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDI 333 (1103)
Q Consensus 254 ~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (1103)
++.++.+.....+.. +++.+-. ..-.++-....-+.++..++. . ..+..-..+++.+..++...
T Consensus 199 lL~ei~~~d~~a~~k----Lv~~l~~---~~l~~~~~q~~llr~l~~~~~------~---d~~~~~~~~~~~l~~~L~~~ 262 (355)
T 3tjz_B 199 LLYHVRKNDRLAVSK----MISKFTR---HGLKSPFAYCMMIRVASRQLE------D---EDGSRDSPLFDFIESCLRNK 262 (355)
T ss_dssp HHHHHHTTCHHHHHH----HHHHHHS---SCCSCHHHHHHHHHHHTCC--------------------------CCCCCS
T ss_pred HHHHHHhhchHHHHH----HHHHHhc---CCCcChHHHHHHHHHHHHhcc------c---cchhhHHHHHHHHHHHHcCC
Confidence 999998765433322 2332211 000112111111111111111 0 00111233333333333211
Q ss_pred CCCcccccCCCCCccccCCCchhhHHHHHHHHHHH--cCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHH
Q 001307 334 EDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA--LGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV 411 (1103)
Q Consensus 334 ~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 411 (1103)
...+..++...+... .+ ...+......+..++.+++...|++|+..|..++...+..
T Consensus 263 --------------------~~aVvyEa~k~I~~l~~~~-~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 263 --------------------HEMVVYEAASAIVNLPGCS-AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp --------------------SHHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred --------------------ChHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence 111223333333221 11 2233333455667788889999999999999998876654
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 001307 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (1103)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L 442 (1103)
+.. .-.-+..++.|+|..++.-|..+|
T Consensus 322 v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 322 VTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------------------------------
T ss_pred HHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 433 334456678899988877776655
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.99 E-value=3.8e-05 Score=82.80 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=113.8
Q ss_pred CchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCCh
Q 001307 353 SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP 432 (1103)
Q Consensus 353 ~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 432 (1103)
..+..++++|+.+ ..++++ ...+ ..+...+..+.|.+|++++..|..+.+-. ..++.+++.++.+|+|++.
T Consensus 243 PVRETaAQtLGaL-~hLp~e--~~IL-~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-----~~Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP--NDII-EQLVGFLDSGDWQVQFSGLIALGYLKEFV-----EDKDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS--CCHH-HHHTTGGGCSCHHHHHHHHHHHHHTGGGC-----CCHHHHHHHHHHHTTCSSH
T ss_pred ehHHHHHHHHHHH-HhCChh--HHHH-HHHHhhcCCCCeeehhhhHHHHHHHHHHH-----HHHHHHHHHHHhhcCCccc
Confidence 3566788999999 888754 3333 33334557788999999999999882221 1289999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHH
Q 001307 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1103)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~ 511 (1103)
.||..|+.+|.-++ . ...++.++..+..+|.+. .-.......+..|+.++..-...... +.+++.|...
T Consensus 314 DVRAVAAetLiPIA--~-----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~d---p~LVPRL~PF 383 (800)
T 3oc3_A 314 DIKLLSAELLCHFP--I-----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIP---PERLKDIFPC 383 (800)
T ss_dssp HHHHHHHHHHTTSC--C-----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCC---SGGGGGTGGG
T ss_pred HHHHHHHHHhhhhc--c-----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccC---hHHHHHHHhh
Confidence 99999999998877 2 234555666655555431 12223355667777777654322222 3888999999
Q ss_pred hhcCChhHHHHHHHHHHHHH
Q 001307 512 LQNGKQMVQEGALTALASVA 531 (1103)
Q Consensus 512 l~~~~~~v~~~al~al~~l~ 531 (1103)
+.++-..||..++.++.++.
T Consensus 384 LRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 384 FTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GTCSSHHHHHHHHHHTTTCC
T ss_pred hcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999987765
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.85 E-value=6e-05 Score=81.31 Aligned_cols=206 Identities=14% Similarity=0.167 Sum_probs=137.1
Q ss_pred CCChhHHHHHHHHHHHhcccCCC--CccccCCHHHHHHHHHHHHHHHh---------hcchhhHHHHHHHHHHHHHhccc
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDS--FLWPRLSLHTQSSLKSMLLQSIQ---------LESAKSISKKLCDTVSELASNIL 136 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~--~~w~~l~~~~~~~ik~~ll~~l~---------~e~~~~vr~~~~~~i~~ia~~~~ 136 (1103)
++..++|+-|+.-||.+++.++. ..+..... .+-..++-.|. +.....||..+|+++|.+ .+ .
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~h-L 258 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YP-L 258 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TT-T
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-Hh-C
Confidence 78899999999999999988742 11222222 33333444332 225677999999999998 54 4
Q ss_pred CCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhc
Q 001307 137 PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1103)
Q Consensus 137 ~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1103)
|.. -..+..+......+.|++|++|+..+..+ .+.+. .++.+++.+..+|+|. +.+||..|..++..++ .
T Consensus 259 p~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~-~Ld~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA--~ 328 (800)
T 3oc3_A 259 IGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE-DKDGLCRKLVSLLSSP-DEDIKLLSAELLCHFP--I 328 (800)
T ss_dssp SCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC-CHHHHHHHHHHHTTCS-SHHHHHHHHHHHTTSC--C
T ss_pred Chh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH-HHHHHHHHHHhhcCCc-ccHHHHHHHHHhhhhc--c
Confidence 533 35555555556788999999999999988 22222 2889999999999997 9999999999887776 1
Q ss_pred CCcchHhHHHhhHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHH
Q 001307 217 TSSADRDRFQDLLPLMMRTLTESLNNGNE--ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1103)
Q Consensus 217 ~~~~~~~~~~~~ip~ll~~l~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a 294 (1103)
.+.++.+++.+..++.+.+. ......+..|..++......- ..+.+++.++..+. +.-.+||..+
T Consensus 329 ---------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLR--HtITSVR~AV 395 (800)
T 3oc3_A 329 ---------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFT--SPVPEVRTSI 395 (800)
T ss_dssp ---------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGT--CSSHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhc--CCcHHHHHHH
Confidence 13355677777777765321 223445677777765432100 01245555555553 4568899888
Q ss_pred HHHHHHHH
Q 001307 295 IEFVITLA 302 (1103)
Q Consensus 295 ~~~l~~l~ 302 (1103)
+..+.++.
T Consensus 396 L~TL~tfL 403 (800)
T 3oc3_A 396 LNMVKNLS 403 (800)
T ss_dssp HHHTTTCC
T ss_pred HHHHHHHH
Confidence 87765443
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.77 E-value=0.098 Score=59.34 Aligned_cols=215 Identities=12% Similarity=0.152 Sum_probs=135.9
Q ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHH----HHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCcccc
Q 001307 22 APFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSL----TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR 95 (1103)
Q Consensus 22 ~~l~~ll~~~~s~-d~~~r~~Ae~~L~~~~~~~p~~~----~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~ 95 (1103)
+.+..|...+.+. --+.|+.|-..|+.+.+.+|..+ ++.|+.+|++ ..+.++-+.+.-.|-+.+...+.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~----- 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE----- 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc-----
Confidence 3566666666543 56899999999999988777542 5778888876 46677766677666666554310
Q ss_pred CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhh
Q 001307 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1103)
Q Consensus 96 l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 175 (1103)
+++.. ...+....+....++.+ . +-++-++.|+.++++.+...|..++.+|..++..-+
T Consensus 96 -~~~~~----------~~~~~~~~~~~~~~d~f---~-------~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~ 154 (651)
T 3grl_A 96 -EEVEE----------NSTRQSEDLGSQFTEIF---I-------KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG 154 (651)
T ss_dssp -----------------------CHHHHHHHHH---H-------HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH
T ss_pred -ccccc----------cccccchHHHHHHHHHH---H-------cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc
Confidence 00000 01111222322222222 1 125778999999999999999999999999998766
Q ss_pred hhchhhH---HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 001307 176 DTLTPHL---KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (1103)
Q Consensus 176 ~~l~~~~---~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~ 252 (1103)
+.....+ +.-++.+...|.|+ ...+|..++-.+..+...-......-.|..-++.+++.+..--..+...+...++
T Consensus 155 ~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 155 PQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp HHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 6443322 24567888999997 8999999999999998753211122234444555666554321112335667788
Q ss_pred HHHHHHHccch
Q 001307 253 ELLIELAGTEP 263 (1103)
Q Consensus 253 ~~l~~l~~~~~ 263 (1103)
.++..+++.++
T Consensus 234 ~ll~nLLr~N~ 244 (651)
T 3grl_A 234 ILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhcCH
Confidence 88888887664
No 101
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.67 E-value=0.0023 Score=78.45 Aligned_cols=171 Identities=9% Similarity=0.048 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHH-HHhHHHHHHHHHhcCCCCC-hhH
Q 001307 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVM-VKNLEQVLSMVLNSFRDPH-PRV 434 (1103)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~~-~~v 434 (1103)
+..++..++...-+....+.++..+.+..+ +.+| .|.+++..+..+.-...-.+ ......+...+...|.|++ .+|
T Consensus 782 a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EV 860 (997)
T 1vsy_5 782 PVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEV 860 (997)
T ss_dssp SHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHH
Confidence 445666665443334455556666655555 6789 99998888766543111000 1233578899999999999 999
Q ss_pred HHHHHHHHHHhhhhh-chhHHhhhhhhhHHHHHhhccC-----------CCCcchHHHHHHHHHHHHhcCCccc-ccCch
Q 001307 435 RWAAINAIGQLSTDL-GPDLQNQFHPQVLPALAGAMDD-----------FQNPRVQAHAASAVLNFSENCTPEI-LTPYL 501 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~-~~~~~~~~~~~il~~l~~~l~~-----------~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l 501 (1103)
|..|..+|+-+.... .... ...++..+.+.+.. ......|.+|+-.|+.++..++... +.+++
T Consensus 861 Re~Aa~tLsgll~c~~~~~~----~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~ 936 (997)
T 1vsy_5 861 RVRAASILSDIVHNWKEEQP----LLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWI 936 (997)
T ss_dssp HHHHHHHHHHHHHSCCSHHH----HHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHH
T ss_pred HHHHHHHHHHHHHcCCchhh----HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCccc
Confidence 999999999887554 2111 11233333332211 0111467888999999999998764 36799
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001307 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1103)
Q Consensus 502 ~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~ 534 (1103)
|+++..|.....++.+ ++..+=.+++.+-+.-
T Consensus 937 P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 937 PKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR 968 (997)
T ss_dssp HHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 9999888877777544 7777777777655443
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.63 E-value=0.002 Score=64.27 Aligned_cols=174 Identities=11% Similarity=0.057 Sum_probs=111.5
Q ss_pred HHHHHHhhcCCCh--HHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001307 379 SEQLPAYLAAPEW--QKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1103)
Q Consensus 379 ~~~l~~~l~~~~~--~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (1103)
+|.+.+++++++. ..+..|..++..++.+..+.-.... ...+|.++..|.++++.+|..|+++|..++..-...-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556677888777 7777777888888866543222222 246799999999999999999999999998642221101
Q ss_pred hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhh----------------cCChhH
Q 001307 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ----------------NGKQMV 519 (1103)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~----------------~~~~~v 519 (1103)
-.-...+|.|++.|.+.++..+++.|+.+|.++...-... ......-++.|...+. ..+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 1234678999999973257889999999999987532211 1122223444443221 124589
Q ss_pred HHHHHHHHHHHHHhhhh---hhHhhHhhhhHHHHHHHhh
Q 001307 520 QEGALTALASVADSSQE---HFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 520 ~~~al~al~~l~~~~~~---~~~~~~~~i~~~l~~~l~~ 555 (1103)
++.+..++..++....+ .+.. .+.+++.|..++..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHh
Confidence 99999999999764322 2222 23456666666554
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.51 E-value=0.00011 Score=66.92 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=69.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001307 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1103)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (1103)
+.+...+++++|.+|..|+.+|+.+.. +..++.+...++|+++.||..|+++|+.+.. +
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------E 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------H
Confidence 556677889999999999999987753 2346667777789999999999999998752 2
Q ss_pred hhHHHHHhhccCCCCcchHHHHHHHHHH
Q 001307 460 QVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1103)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1103)
..++.|...+++ +++.||..|+.+|..
T Consensus 104 ~a~~~L~~~l~d-~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 RVRAAMEKLAET-GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHTTS-CCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHh
Confidence 467788888888 889999999998764
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.47 E-value=0.1 Score=62.30 Aligned_cols=188 Identities=10% Similarity=0.115 Sum_probs=100.6
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC--CcchhHHH-HHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhH-
Q 001307 107 MLLQSIQLESAKSISKKLCDTVSELASNILPEN--GWPELLPF-MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL- 182 (1103)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--~w~~ll~~-l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~- 182 (1103)
-+++.|.+ +++..|..+|.+|+.++...-... .-...++. +..++.+++..+|..|..+|+.++...+..+..++
T Consensus 38 Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 38 PVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 35677777 799999999999999975211000 11344544 45678889999999999999999876443322110
Q ss_pred -HHHHHHHHHhh-------CCC------CCh-------HHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHH
Q 001307 183 -KHLHAVFLNCL-------TNS------NNP-------DVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTES 239 (1103)
Q Consensus 183 -~~l~~~l~~~l-------~~~------~~~-------~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~ip~ll~~l~~~ 239 (1103)
..+++.+...+ ... ... .+...++.++..+...-. .....+ ...+|.++..+...
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--EIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHhcccHHHHHHHHHhc
Confidence 11222222222 111 011 122233444444443211 011111 23456666665432
Q ss_pred HhCCCHHHHHHHHHHHHHHHccchHHHHHhHH----HHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001307 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLV----DVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1103)
Q Consensus 240 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1103)
.....+++..++.+|..+.+..+.+...... .++..++...... ...|..+...+..+
T Consensus 195 -~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~---~~~~~la~giL~Ni 256 (684)
T 4gmo_A 195 -DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT---DPRAVMACGVLHNV 256 (684)
T ss_dssp -CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS---CTTHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC---cHHHHHHHHHHHhH
Confidence 1224678899999999999887765544322 2444444443322 22344444444443
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.41 E-value=0.048 Score=61.80 Aligned_cols=323 Identities=13% Similarity=0.135 Sum_probs=169.6
Q ss_pred hhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhcCCcc
Q 001307 143 ELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSA 220 (1103)
Q Consensus 143 ~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~ 220 (1103)
+.++.|..-+++ .-..-|..|+..|..+.+..+..+.. .-++.+...|+++ .+.++-..++.+|..++...+...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~---~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI---QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH---HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh---hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 444444444433 33456667777777776655443221 2233333333332 355555566776666554321100
Q ss_pred -----------hHhHHHhhH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHH---HHHHHHHHhhcC
Q 001307 221 -----------DRDRFQDLL---PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV---DVVGSMLQIAEA 283 (1103)
Q Consensus 221 -----------~~~~~~~~i---p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~l~~~l~~~~~~ 283 (1103)
....+.+.+ +.-+..+...+++.+..+|..++++|..++...+......+- .-++.++.++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 000011111 234556667778889999999999999999998886666544 457777777753
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHH
Q 001307 284 ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1103)
Q Consensus 284 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~ 363 (1103)
..+.+|..++-++..+++. .+.. +++- ..+..++.++..+.... ......+...|+.
T Consensus 178 --~rE~iRneallLL~~Lt~~---n~~i-QklV-AFEnaFe~Lf~Ii~~Eg----------------~~~Ggivv~DCL~ 234 (651)
T 3grl_A 178 --SREVIRNDGVLLLQALTRS---NGAI-QKIV-AFENAFERLLDIITEEG----------------NSDGGIVVEDCLI 234 (651)
T ss_dssp --SSHHHHHHHHHHHHHHHTT---CHHH-HHHH-HHTTHHHHHHHHHHHHT----------------GGGSHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHhcC---CHHH-HHHH-HHhccHHHHHHHHHhcC----------------CCccchhHHHHHH
Confidence 4688999999999999883 3321 1110 11234555555553210 0011124455665
Q ss_pred HHHHHcCCC----------cchHHHHHHHHHhhcCCChHHHHH-----HHHHHHHHHhhcH-----HHHHHhHH--HHHH
Q 001307 364 RLAIALGGN----------TIVPVASEQLPAYLAAPEWQKHHA-----ALIALAQIAEGCA-----KVMVKNLE--QVLS 421 (1103)
Q Consensus 364 ~l~~~~~~~----------~~~~~l~~~l~~~l~~~~~~~r~a-----al~~l~~l~~~~~-----~~~~~~l~--~i~~ 421 (1103)
.+...+..+ ..+|.+.+.+..--....|..+.. ++.++..+..... ..-...+- .+++
T Consensus 235 ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~ 314 (651)
T 3grl_A 235 LLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQ 314 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHH
Confidence 555443211 122333332221111234753332 3333333433211 11111111 2455
Q ss_pred HHHhcCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhh----------hhhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307 422 MVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQF----------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 422 ~l~~~l~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~~----------~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1103)
.++..+..+ ...||..|+.+++.+...-+. .+..+ .+.++..++..+++.....+|.+|+.++..++
T Consensus 315 ~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~-~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 315 QLCTILMATGVPADILTETINTVSEVIRGCQV-NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH-HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 555554433 567999999999988764322 11111 13455555565666455788999999999987
Q ss_pred hcC
Q 001307 490 ENC 492 (1103)
Q Consensus 490 ~~~ 492 (1103)
.+-
T Consensus 394 ~~N 396 (651)
T 3grl_A 394 YKN 396 (651)
T ss_dssp TTC
T ss_pred hCC
Confidence 553
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.31 E-value=0.0018 Score=64.67 Aligned_cols=201 Identities=13% Similarity=0.053 Sum_probs=119.4
Q ss_pred HHHHHhcCCCCCh--hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 420 LSMVLNSFRDPHP--RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 420 ~~~l~~~l~d~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
++.++..|+++++ .++..|++++..++..-.+.-..-.....+|.|++.|.+ +++.+|..|+++|.++.........
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5667778887777 899899999999886433221112234678999999998 8999999999999999864321110
Q ss_pred cCchHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh----cC--------Ccccchh
Q 001307 498 TPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN----AT--------DKSNRML 564 (1103)
Q Consensus 498 ~~~l~~ll~~L~~~l~-~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~----~~--------~~~~~~l 564 (1103)
.=.-..-++.|++++. +++..+++.+..++-.++...... ......-+|.|.+.+.. .. ...+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 0011235778888887 468899999999999987543211 12223345555543211 00 0113356
Q ss_pred hhHHHHHHHHHHHhh--Chhhhhhh---HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhH
Q 001307 565 RAKSMECISLVGMAV--GKDKFRDD---AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1103)
Q Consensus 565 r~~a~~~l~~i~~~~--~~~~~~~~---~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1103)
+..|..|+..++.+- ++..+... ++.++.++-.-.. .-+.++...+-++.++.+++..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~-~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA-DYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh-cccchhHHHHHHHHHHHHHHhh
Confidence 777888888886531 22333321 2334443332111 1123444566677677666543
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.10 E-value=0.032 Score=54.29 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001307 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1103)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (1103)
.+.+++.+..+.+++.-.+|..|...|+.. . ....+++.+.. ...|++.+||+.++.+++.++....+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH--
Confidence 566777788888888889999999988876 2 23567888876 66799999999999999988863333
Q ss_pred HhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001307 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1103)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~ 533 (1103)
+..++.+..-..| +++.||..|+..+..++.. . . .......+++.|-.+..+++..||..+-.+|..++..
T Consensus 138 -----e~~l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~-~-~-~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 -----KKALPIIDEWLKS-SNLHTRRAATEGLRIWTNR-P-Y-FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----TTTHHHHHHHHHC-SSHHHHHHHHHHTCSGGGS-T-T-TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHhcC-CCHHHHHHHHHhhHHHhcc-c-h-hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2366777788888 8999999998887655543 2 1 3455667788888888888999999988888888876
Q ss_pred hhhh
Q 001307 534 SQEH 537 (1103)
Q Consensus 534 ~~~~ 537 (1103)
-++-
T Consensus 209 ~Pd~ 212 (240)
T 3l9t_A 209 FPDL 212 (240)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6654
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.37 E-value=0.33 Score=47.25 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCCh---HHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHH
Q 001307 24 FETLISHLMSTSN---EQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1103)
Q Consensus 24 l~~ll~~~~s~d~---~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1103)
+.+++..+..-.+ ..-+.|...+..+. .+. ...+.+-|.++...++|..|+-+|.+. . . ..+.
T Consensus 39 ~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~---~~~-~~~la~~L~~~~~deVR~~Av~lLg~~-~-~--------~~~~ 104 (240)
T 3l9t_A 39 VARLEKDFSLIEHGFKEEEQRALTDYKSND---GEY-IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K--------DKEI 104 (240)
T ss_dssp HHHHHHHHTC-----CHHHHHHHHHHHHSC---HHH-HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T--------SHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhCC---HHH-HHHHHHHHHhCcchHHHHHHHHHHHhc-c-C--------cHHH
Confidence 3344444443222 34444544444432 233 456667677777789999999988775 2 1 1222
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchh
Q 001307 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1103)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (1103)
...+ -..+....+..||..++.+++.++....|+ ..++.+..++.+++..+|..|.......+.. ..+..
T Consensus 105 L~~i----r~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~ 174 (240)
T 3l9t_A 105 LIFM----RDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKE 174 (240)
T ss_dssp HHHH----HHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTT
T ss_pred HHHH----HHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhc
Confidence 2222 233555678899999999999998633332 3788999999999999999988876543332 23444
Q ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
....+++++.....|+ +.-||.+....|..+...
T Consensus 175 dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 175 NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKK 208 (240)
T ss_dssp CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhh
Confidence 6677889999988887 999999998888887764
No 109
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.13 E-value=0.77 Score=54.78 Aligned_cols=301 Identities=10% Similarity=0.057 Sum_probs=165.0
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC--CCCcchHHHHHHHHHHHH
Q 001307 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD--FQNPRVQAHAASAVLNFS 489 (1103)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~~v~~~a~~al~~l~ 489 (1103)
....+..+.|.+..++.+.+..+...+..++..++---+..- .-.++.++..+...|.. ...+.-...++.+|..++
T Consensus 333 ~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~-~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 333 HEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNA-YLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcc-ceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 345566778888899999999999999999999996544111 12355666666555544 223433355666666665
Q ss_pred hcCC-cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh---------------------------------
Q 001307 490 ENCT-PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--------------------------------- 535 (1103)
Q Consensus 490 ~~~~-~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~--------------------------------- 535 (1103)
.-+- .....+|+..++..++..++..++.--..++..+.+++..++
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 4432 123456888888888888887777666677777777765321
Q ss_pred -------------------hhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 001307 536 -------------------EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1103)
Q Consensus 536 -------------------~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~ 596 (1103)
..|..+...++..+...+++.. +.. +-.....++..+...+..+.|...+..+.+.+.
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~--Ee~-l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL--EDS-LVTKINQTTMILQESMDDKIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC--CTH-HHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--hHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1134455556666666665421 211 112233445555556666666666666666654
Q ss_pred HHhcCCCC-CCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCC
Q 001307 597 SLQGSQME-TDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGD 675 (1103)
Q Consensus 597 ~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 675 (1103)
. +... ..+.+..-+.=-+..++++-++.+..++|.++..+...++...+.. .. ..+....|.
T Consensus 569 ~---n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~-rs------~~e~~~~D~------- 631 (799)
T 1vsy_4 569 S---NDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSV-RS------TSEIQQRDV------- 631 (799)
T ss_dssp S---CSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCS-CC------SSSCCTTTH-------
T ss_pred H---hhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccccc-cc------ccccCcchH-------
Confidence 3 1111 1122211100003455555555444444444444432221110000 00 000000000
Q ss_pred ceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHH
Q 001307 676 KRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1103)
Q Consensus 676 ~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1103)
+-.--+.+|+.+....|..+.+|.+++++.+..++....+..+-+.+...+.+++...
T Consensus 632 -----------~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 632 -----------KLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp -----------HHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 0112355788888888999999999888876655543234444466777777777665
No 110
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.82 E-value=2.1 Score=44.18 Aligned_cols=189 Identities=12% Similarity=0.138 Sum_probs=119.6
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCC--------CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307 107 MLLQSIQLESAKSISKKLCDTVSELASNILPE--------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1103)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~--------~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l 178 (1103)
.|+..|.. -+.+.|+.++++.+.+.+..... ..+|+++..|+....+++...- +-.+|...+++ +.+
T Consensus 82 ~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~--e~l 156 (341)
T 1upk_A 82 TLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRH--EPL 156 (341)
T ss_dssp HHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTS--HHH
T ss_pred HHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHh--HHH
Confidence 34444443 35556666666666665543221 1468899999988887765332 22233333332 111
Q ss_pred hhh--HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001307 179 TPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1103)
Q Consensus 179 ~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~ 256 (1103)
..+ ....+-.|......+ +-+|-.-|+..+..++.... ....+-+......+...+..++++++.-.+..++..|+
T Consensus 157 a~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 110 001112334566776 88999999999988876521 11223344556677778888889999999999999999
Q ss_pred HHHcc--chHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001307 257 ELAGT--EPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1103)
Q Consensus 257 ~l~~~--~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1103)
++.-. +...+..|+. +-+..++.++. +....++..|+.++..++.+
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~--d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLR--DKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHC
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhc--CchhchhhhhhhheeeeeeC
Confidence 99864 5666777665 45666677774 45789999999999988874
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.72 E-value=0.22 Score=47.21 Aligned_cols=128 Identities=17% Similarity=0.298 Sum_probs=83.8
Q ss_pred HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC-----CCCcchHHHHHHH
Q 001307 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD-----FQNPRVQAHAASA 484 (1103)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~-----~~~~~v~~~a~~a 484 (1103)
+....+++++...+.. ..|.+|+..|.. ++-+.+++|.+++.+.+ -.+...-...+..
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~aL~sL~~----------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~ 69 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIAIECLEK----------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIAL 69 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHHHHHHHH----------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHhc----------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3455677777777665 457887777644 12234455544443322 0133444555666
Q ss_pred HHHHHhcCCcccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhh
Q 001307 485 VLNFSENCTPEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1103)
Q Consensus 485 l~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~---~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1103)
...+..+-.- .+.||+..+++.++.++-.. ...+|+.|...++.++...+.......+.++..+.+.+.+
T Consensus 70 ~~ALl~N~~l-~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 70 YFSLIKNKHV-FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp HHHHHHCTTC-CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCC-ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 6667766553 47899999999999987543 2379999999999999988876555556677777776654
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.69 E-value=0.85 Score=49.31 Aligned_cols=126 Identities=12% Similarity=0.066 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001307 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1103)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1103)
...|.+.+.++...++ ......+..+..+..+.+..+|..|+..|-.++.. .+++++.+.+.+.|+..++.-
T Consensus 45 K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 45 KRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHH
Confidence 3467778888777775 55566667777788899999999999888877765 578899999999999888888
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1103)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1103)
+...-++|-.+...-+. ..+..++..+.. ++..+|..+..+|..-+..++.+.+
T Consensus 117 ~~~V~~sL~sllk~Dpk----~tl~~lf~~i~~-----~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDAK----GTLGGLFSQILQ-----GEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp HHHHHHHHHHHHHHCHH----HHHHHHHHHHHH-----SCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred HHHHHHHHHHHHhcChH----HHHHHHHHHHcc-----cchHHHHHHHHHHHHHHhhcchhhc
Confidence 88877777776643221 223333333333 3467888888888776666555433
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.87 E-value=3.6 Score=41.24 Aligned_cols=172 Identities=14% Similarity=0.180 Sum_probs=111.5
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh---
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC--- 215 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~--- 215 (1103)
.-+|++++.+.+...+++..+|......+...+..-. .+...+++.+...+++. ++.|.+.++.+...+...
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDN-SAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888778888999999988888875432 25777888888888886 899999999888877653
Q ss_pred -cCCcch----HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc--cc-------------------------h
Q 001307 216 -LTSSAD----RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG--TE-------------------------P 263 (1103)
Q Consensus 216 -~~~~~~----~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~--~~-------------------------~ 263 (1103)
+-.... .+..-+.+-.+=+.+.....+.+..++..+++.+..++- +. +
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~ 203 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRR 203 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCH
Confidence 211111 111112222233344455667889999999888876652 11 1
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH
Q 001307 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI 325 (1103)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 325 (1103)
..+..--..++..++....+++.....-..++..|..+++ ..| .+..++++.
T Consensus 204 ~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak---~RP-------~~~~rIl~a 255 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAK---MRP-------IFMGAVVEA 255 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH---HCG-------GGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH---hCc-------HHHHHHHHh
Confidence 3344445567777777665544444455567777887877 344 355666654
No 114
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=94.80 E-value=5 Score=47.83 Aligned_cols=260 Identities=8% Similarity=0.045 Sum_probs=151.4
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH---HHHHHhHHHHHHHHHhcCCC---CChhHHHHHHHHHHHhh
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA---KVMVKNLEQVLSMVLNSFRD---PHPRVRWAAINAIGQLS 446 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~d---~~~~vr~~a~~~L~~l~ 446 (1103)
.++..+.|.+...+.+.+......+..++..++.-.| + -.++.++..+.+.|.. ..+.-..+|+.++..++
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~---lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAY---LIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHH---HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccc---eehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 4556677777888888888888888899999988555 6 3456666666667666 55666667788888877
Q ss_pred hhhch--hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCccc----------------------------
Q 001307 447 TDLGP--DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI---------------------------- 496 (1103)
Q Consensus 447 ~~~~~--~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~---------------------------- 496 (1103)
..+-. .+ ..|+..++..++.+++- .++.--..+..++..++...+-..
T Consensus 412 r~lv~~~~y-r~hl~~lL~l~LpgID~-ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~ 489 (799)
T 1vsy_4 412 RFIVMDKLY-RVHITNVLSMLVSKLDM-NDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCG 489 (799)
T ss_dssp HHHTTSTTG-GGHHHHHHHHHHHTCCS-SCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTT
T ss_pred HHHhcCccc-HHHHHHHHHHHhccCCc-ccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccc
Confidence 65532 23 45778888888888877 666655677777777765432110
Q ss_pred -----------------------ccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHH
Q 001307 497 -----------------------LTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1103)
Q Consensus 497 -----------------------l~~~l~~ll~~L~~~l~~~~-~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1103)
+..++..+++.++.++++.. ..+-.....++..+...+.+ +.++.++..+.+.
T Consensus 490 ~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~f 566 (799)
T 1vsy_4 490 ESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRN 566 (799)
T ss_dssp CCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHH
Confidence 11233455667777776532 22323333344444444333 2444555555555
Q ss_pred HhhcCCcccchhhhHH-HHH--HHHHHHhhChhhhhhhHHHHHHHHHHHhcCC-----C----CCCCchhhHHHHHHHHH
Q 001307 553 LVNATDKSNRMLRAKS-MEC--ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQ-----M----ETDDPTTSYMLQAWARL 620 (1103)
Q Consensus 553 l~~~~~~~~~~lr~~a-~~~--l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~-----~----~~~~~~~~~~~~~~~~l 620 (1103)
+.+...... .+..+ +.. ++.++.+-++ .+..+++.++..+....+++ . ...|...-.-+..++.+
T Consensus 567 v~~n~~~~a--~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~ 643 (799)
T 1vsy_4 567 FWSNDSFKE--KDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDV 643 (799)
T ss_dssp HHSCSCCCS--SSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHhhhhhH--HHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHH
Confidence 444222111 11110 111 3455555453 56555555554444321222 1 11222233455677788
Q ss_pred HhHhcCCcccchhhhhHHHHHhc
Q 001307 621 CKCLGQDFLPYMSVVMPPLLQSA 643 (1103)
Q Consensus 621 ~~~~~~~~~p~l~~i~~~ll~~~ 643 (1103)
....|..+.+|-..++..+-..+
T Consensus 644 v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 644 LRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HhcCcHHHHccHHHHHHHHHHHH
Confidence 88888889999998888776554
No 115
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.75 E-value=3.9 Score=42.19 Aligned_cols=111 Identities=12% Similarity=0.204 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHH-HHhhcCCcccchhh-hHHHHHHHHHHHhhChhhhhhhHHHHHHH
Q 001307 517 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNATDKSNRMLR-AKSMECISLVGMAVGKDKFRDDAKQVMEV 594 (1103)
Q Consensus 517 ~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~-~l~~~~~~~~~~lr-~~a~~~l~~i~~~~~~~~~~~~~~~i~~~ 594 (1103)
+.+|+..+..+.+.+....+ .....+.++|.|.. .+....+ .....| ...+.+++.+...+| +.+.|+++.+++.
T Consensus 43 R~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~-~vp~aRepeVL~l~~tii~kl~-~~i~~~vp~Il~~ 119 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQR-NVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHT-SCGGGCCTHHHHHHHHHHHHHG-GGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHHHHHH-HHhhhhHHHHHHH
Confidence 35677888888888766543 11223444554443 2322111 111112 346889999999998 8899999999988
Q ss_pred HHH----HhcCCCCCCCchhhHHHHHHHHHHhHhcCCccc
Q 001307 595 LMS----LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLP 630 (1103)
Q Consensus 595 l~~----l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 630 (1103)
+++ +.+..+++.-+.|...+..+..+...+-..+-.
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~ 159 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLA 159 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHc
Confidence 765 455555544457888888888887776554443
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.67 E-value=0.15 Score=48.30 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCC---Chh
Q 001307 359 QECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP---HPR 433 (1103)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~---~~~ 433 (1103)
..++..+...-|-..++|.+..++.+.+. -.++..-...+....++..+..-.+.+|+.+++|.++.++-.. ...
T Consensus 26 ~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~ 105 (196)
T 4atg_A 26 DIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDD 105 (196)
T ss_dssp HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHH
T ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHH
Confidence 35777787777777888888888877553 2467666666777777776655566789999999888876321 127
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCc--chHHHHHHHHHHH
Q 001307 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNF 488 (1103)
Q Consensus 434 vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--~v~~~a~~al~~l 488 (1103)
+|+-|+..++.++..++... ....+.++..+.+.+.| ++. ...-.|...|..+
T Consensus 106 LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~d-p~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 106 VRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMD-PNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHh
Confidence 99999999999999887654 44567788888888877 432 3444555555544
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.66 E-value=5.6 Score=42.44 Aligned_cols=176 Identities=13% Similarity=0.139 Sum_probs=113.7
Q ss_pred CCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh---
Q 001307 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC--- 215 (1103)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~--- 215 (1103)
.-.+++++.+++...+++..+|..+...+...+..-. ++...+++.+...+++. ++.|...++.+...+...
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~----el~~~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI----ELLLKLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999888876432 25677788888888886 899998888888877542
Q ss_pred -c-CCcch---HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc----------------------------
Q 001307 216 -L-TSSAD---RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE---------------------------- 262 (1103)
Q Consensus 216 -~-~~~~~---~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~---------------------------- 262 (1103)
+ .+... .+..-+.+-.+-+.+...+.+.+..++..+++.+-.++-..
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 1 11110 01111222223334444566788899998888877665211
Q ss_pred --hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001307 263 --PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1103)
Q Consensus 263 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1103)
+..+..--..++..++..+.....+.-.-..++..|..+++ ..| .+...+++.+..+
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak---~RP-------~~~~rIl~aL~~l 272 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIAR---QRP-------MFMSEVIQAYETL 272 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHH---HSG-------GGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHH---hcH-------HHHHHHHHHHHhh
Confidence 12233444577888888776544444444556677777776 333 4677788877653
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.75 E-value=9.2 Score=41.49 Aligned_cols=186 Identities=12% Similarity=0.115 Sum_probs=114.1
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHH
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~ 147 (1103)
..++..+++|+..+.+.++.. ++.++.-.+.++....+ .+..||.++...+-.+++. ...+.+...
T Consensus 39 kg~~k~K~LaaQ~I~kffk~F---------P~l~~~Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~----~~i~kiaDv 104 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHF---------PELADSAINAQLDLCED-EDVSIRRQAIKELPQFATG----ENLPRVADI 104 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGC---------GGGHHHHHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT----TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhC---------hhhHHHHHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh----hhhhhHHHH
Confidence 557999999999999987663 45555556677888886 5888999987777766653 234678899
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001307 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1103)
Q Consensus 148 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1103)
|.|++++.++..+...=..|-.+....+. ..+-.+|.+..+. +..+|..+++.+..-+..+..........
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk------~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~~~~l~~E~E- 175 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDAK------GTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLPDEVLTKEVE- 175 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSCTTTSCHHHH-
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcChH------HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcchhhccHHHH-
Confidence 99999998876665555555555544322 1222334444443 67999999988877766554322212122
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhh
Q 001307 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1103)
Q Consensus 228 ~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~ 281 (1103)
..+...+...+++-..+.....+.+|..+- .. ... ....++++++...+
T Consensus 176 --~~i~~~ikK~L~DVT~~EF~L~m~lL~~lk-l~-~t~-~g~qeLv~ii~eQa 224 (507)
T 3u0r_A 176 --ELILTESKKVLEDVTGEEFVLFMKILSGLK-SL-QTV-SGRQQLVELVAEQA 224 (507)
T ss_dssp --HHHHHHHHHHTTSCCHHHHHHHHHHHHTSG-GG-SSH-HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhccccHHHHHHHHHHHHhcc-cc-cCc-hHHHHHHHHHHHHH
Confidence 245555666665555555555555553221 11 111 22346666666554
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.31 E-value=7.4 Score=38.99 Aligned_cols=209 Identities=12% Similarity=0.110 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHh-hhcCch---HHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCC
Q 001307 22 APFETLISHLMSTSNEQRSEAELLFNLC-KQQDPD---SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1103)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~-~~~~p~---~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~ 97 (1103)
+++..+|+......++.+-..-.+.+++ ...+|. .|+..++++ ..+++.++|+..+-.+.....++
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k--------- 84 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVK--------- 84 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHH---------
Confidence 5667777777664445655555555552 222553 334444443 34677888888888887766543
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhh-cCCCHhHHHHHHHHHHHhhhhhhh
Q 001307 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGD 176 (1103)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~-~s~~~~~r~~al~~l~~l~~~~~~ 176 (1103)
++....+...|...+.+ .++.|.+.+..+.+.+.+ .+++++ .+++... .. +
T Consensus 85 ~~l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~-------------~~l~~i~~~~~~~~--~~------------~ 136 (257)
T 3gs3_A 85 VELLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYK-------------NGLQYLCSLMEPGD--SA------------E 136 (257)
T ss_dssp GGGHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH-------------HHHHHHTTSSSCCH--HH------------H
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCCcc--hH------------H
Confidence 34455555566666664 467777766666655433 222222 2222100 00 0
Q ss_pred hchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCc--c--------------------hHhHHHhhHHHHHH
Q 001307 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS--A--------------------DRDRFQDLLPLMMR 234 (1103)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~--------------------~~~~~~~~ip~ll~ 234 (1103)
..=..+..+-..+...+.+. +..||..+++.+..++...... . ....+..=-..+++
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~ 215 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILD 215 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHH
Confidence 01112334444555556665 8999999999999988543210 0 00111110112333
Q ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHccchHHHHHh
Q 001307 235 TLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ 269 (1103)
Q Consensus 235 ~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~ 269 (1103)
.|...+.++ .......++.+|..+++..|.+....
T Consensus 216 ~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rI 252 (257)
T 3gs3_A 216 ILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAV 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 344434333 23345667788888887777665443
No 120
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.13 E-value=12 Score=40.91 Aligned_cols=354 Identities=14% Similarity=0.164 Sum_probs=161.6
Q ss_pred CchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccc-c---CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 001307 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWP-R---LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (1103)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~-~---l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i 128 (1103)
++. +...+++++.+..+..+.|+..+++..++.... +. . +-.+.....+ .++.......++....+++.++
T Consensus 75 ~~~-~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~---~~~~~~~~f~~~~~~~~-~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 75 NGK-TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK---YGDDTVKFFQEDPKQLE-QLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp SST-THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS---SSHHHHHHHHHCTTHHH-HHHHHCSCSSHHHHHHHHHHHH
T ss_pred Cch-HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc---chHHHHHHHhhCcccch-HHHHHHhcccchHHHHHHHHHH
Confidence 443 457899999999999999999999999887641 11 0 0000001111 1333333323555556666666
Q ss_pred HHHHhcccCCCCcchhHHH------HHHhhcCC-CHhHHHHHHHHHHHhhhh--hhhhchh----hHHHHHHHHHHhhCC
Q 001307 129 SELASNILPENGWPELLPF------MFQCVSSD-SVKLQESAFLIFAQLSQY--IGDTLTP----HLKHLHAVFLNCLTN 195 (1103)
Q Consensus 129 ~~ia~~~~~~~~w~~ll~~------l~~~~~s~-~~~~r~~al~~l~~l~~~--~~~~l~~----~~~~l~~~l~~~l~~ 195 (1103)
+.++... + .-.+.++. ++..+++. +...+..+..++..+... ....+-. .++.++.++...+..
T Consensus 150 ~ll~~~~-~--~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNG-L--HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTT-T--CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccC-C--ccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 6664322 1 11233333 33344442 344456777777766643 1122211 233444444444432
Q ss_pred C------------CChHHHHHHHHHHHHHHHhcCCcchHhHHH-h---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001307 196 S------------NNPDVKIAALNAVINFIQCLTSSADRDRFQ-D---LLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1103)
Q Consensus 196 ~------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~---~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1103)
. ....+...++- +-+.-.+... ..+.+. . .++.++..+.. +..+.+..-++.+|..++
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll--~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~---s~KEKvvRv~la~l~Nll 300 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLL--LIWLLTFNPV-FANELVQKYLSDFLDLLKLVKI---TIKEKVSRLCISIILQCC 300 (480)
T ss_dssp ------------CCHHHHHHHHHH--HHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCccHHHHHHHHH--HHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHh---hccchhHHHHHHHHHHHh
Confidence 1 01223333332 2233333211 111121 1 22333333332 456788888888899888
Q ss_pred ccch---HH-HHHhH--HHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC
Q 001307 260 GTEP---RF-LRRQL--VDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1103)
Q Consensus 260 ~~~~---~~-~~~~~--~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1103)
+..+ .. ....+ ....+ +++.+.. +-.|+++.. .++.+....+.. -.....+..|...+..-.+.|---
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~---~~~ltsfDeY~~El~sG~L~WSP~ 375 (480)
T 1ho8_A 301 STRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQ-DISNLKEILENE---YQELTSFDEYVAELDSKLLCWSPP 375 (480)
T ss_dssp SSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHH-HHHHHHHHHHHH---HHTCCHHHHHHHHHHHTCCCCCGG
T ss_pred cccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHH-HHHHHHHHHHHH---HHhcccHHHHHHHHhcCCcccCCC
Confidence 8652 22 22221 22333 3333333 334455443 345554444421 101111223333333211111000
Q ss_pred CCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh------cCCChHHHHHHHHHHHHHHh
Q 001307 333 IEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL------AAPEWQKHHAALIALAQIAE 406 (1103)
Q Consensus 333 ~~~~~~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~aal~~l~~l~~ 406 (1103)
-.++.-|...-.--+| ..+ .++..+...+...- .+.++..-..|+.=+|.++.
T Consensus 376 H~se~FW~ENa~kf~e----~~~-----------------~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr 434 (480)
T 1ho8_A 376 HVDNGFWSDNIDEFKK----DNY-----------------KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE 434 (480)
T ss_dssp GGCHHHHHHHSGGGSS----GGG-----------------HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHh----cch-----------------HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHH
Confidence 0011113211000000 001 11222222222111 02345666677888888887
Q ss_pred hcHHH--HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhh
Q 001307 407 GCAKV--MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1103)
Q Consensus 407 ~~~~~--~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~ 447 (1103)
..|.. +...+ ..=..++..+.++++.||+.|+.|++.+..
T Consensus 435 ~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 435 LLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66542 11111 123567788999999999999999988753
No 121
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=91.96 E-value=12 Score=40.07 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=54.5
Q ss_pred hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHH
Q 001307 221 DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI-----ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAI 295 (1103)
Q Consensus 221 ~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~-----~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~ 295 (1103)
....|....+.+++.+..++.|++..+...|+..|. .++..+.. ..++-+++.+...+. .+.+..+|..+.
T Consensus 283 ~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~---~IlPii~p~L~~~~~-~HWn~~v~~l~~ 358 (403)
T 3fga_B 283 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA---KILPIMFPSLYRNSK-THWNKTIHGLIY 358 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH---HHHHHHHHHHHHTTS-CCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH---HHHHHHHHHHHHHHH-HccCHHHHHHHH
Confidence 345677888889999999999999999988887663 33322222 223334444444443 468899999999
Q ss_pred HHHHHHHH
Q 001307 296 EFVITLAE 303 (1103)
Q Consensus 296 ~~l~~l~~ 303 (1103)
..+..+.+
T Consensus 359 ~vlk~l~e 366 (403)
T 3fga_B 359 NALKLFME 366 (403)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88888877
No 122
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=90.89 E-value=21 Score=38.87 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhh--
Q 001307 204 AALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA-- 281 (1103)
Q Consensus 204 ~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~-- 281 (1103)
.-+.-+..+++.+ ....|......+++.+..++.+++..+...|+..|..-- .-..+..+...+++.++..+
T Consensus 303 lFL~eleeile~~----~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~--i~~li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 303 MFLNELEEILDVI----EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEY--IMSLISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHH--HHHHHHTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHH--HHHHHHhchhhhHHhhHHHHHH
Confidence 3444444555444 455678888889999999999999999998887663110 01122233334444444322
Q ss_pred -cCCCcchHHHHHHHHHHHHHHH
Q 001307 282 -EAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 282 -~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
...+.+..+|..+...+..+.+
T Consensus 377 ~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 377 NSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp CTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHH
Confidence 2346788999999999887776
No 123
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.34 E-value=28 Score=37.93 Aligned_cols=237 Identities=11% Similarity=0.074 Sum_probs=127.4
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---H----HHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCC
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---S----LTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSF 91 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~---~----~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~ 91 (1103)
|..-+.+||..+.|+|...|..-...|..+...-.+ . ....+...+-. .....+- -..-+|...++..
T Consensus 160 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIa-eLLeilgSIinGf--- 235 (449)
T 2npp_B 160 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGF--- 235 (449)
T ss_dssp CHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHH-HHHHHHHHHHSSC---
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHH-HHHHHHHHHHhcc---
Confidence 444577788888888888888877777665442110 0 11111222111 1111111 1122333444332
Q ss_pred ccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 92 ~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
-..+.++.+..+...|+-..+...-...-.+++.|+..+...+-. --..++..|+..---.+..-...-+.-+..+.
T Consensus 236 -a~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeil 312 (449)
T 2npp_B 236 -ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 312 (449)
T ss_dssp -CSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 124567777777777777666544444556777777766653211 11122222222221233322233455566666
Q ss_pred hhhh-hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHH--HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHH
Q 001307 172 QYIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN--FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEAT 247 (1103)
Q Consensus 172 ~~~~-~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~-~~~~ 247 (1103)
+..+ .++......++..+..+++++ +..|-..|+....+ ++..+. +.-..++|.++..+....... +..+
T Consensus 313 e~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~-----~n~~~IlPii~p~L~~~s~~HWn~~V 386 (449)
T 2npp_B 313 DVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLIS-----DNAAKILPIMFPSLYRNSKTHWNKTI 386 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHH-----TTHHHHHHHHHHHHTSCTTCCSSTTH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHH-----hchhhhHHhhHHHHHHHHHHhcCHHH
Confidence 6553 346667788889999999997 88888887755422 122111 112334566655554433322 5668
Q ss_pred HHHHHHHHHHHHccchHHHHHh
Q 001307 248 AQEALELLIELAGTEPRFLRRQ 269 (1103)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~~ 269 (1103)
+..+..++..+.+..+..|...
T Consensus 387 ~~la~~vlk~l~e~d~~lf~~c 408 (449)
T 2npp_B 387 HGLIYNALKLFMEMNQKLFDDC 408 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHH
Confidence 8888888888888777766543
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.38 E-value=4.2 Score=37.54 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
...+..|...++..+|.++..|+..|..+.+.+++.+..... ..++..+.+.+....++.|+..+...+....+.++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456677888889999999999999999999999887752322 344455555444325679999999999999888774
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.05 E-value=3 Score=37.37 Aligned_cols=78 Identities=10% Similarity=0.305 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1103)
...+..|...+.+.+|.++..|+..|..+.+.+++.+.... ...++..+.+.+.. .++.|+..+...+....+.++.+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCC
Confidence 45667778888899999999999999999999987764222 23444445555544 67899999999999998877643
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=86.48 E-value=37 Score=36.15 Aligned_cols=172 Identities=17% Similarity=0.207 Sum_probs=107.4
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhh---
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL--- 449 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~--- 449 (1103)
.+++.+++.+.++..+++...|......|...+..- ..++..+++.+...++|+++.|...+..+.+.+-...
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777888889987777776554321 2467788888888899999999888887776654211
Q ss_pred ---chh---HHh---hhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc-----c------------ccc---Cc
Q 001307 450 ---GPD---LQN---QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----E------------ILT---PY 500 (1103)
Q Consensus 450 ---~~~---~~~---~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-----~------------~l~---~~ 500 (1103)
.+. ... ..+..+-..++..+.+ .+..||..++.++..++-...+ + .+. |+
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds-~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDS-DNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 010 001 1234445556666766 7889999999999987732210 0 011 12
Q ss_pred ---------hHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHH
Q 001307 501 ---------LDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1103)
Q Consensus 501 ---------l~~ll~~L~~~l~~~--~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1103)
-..+++.|+..+..+ ++..-..++.+++.+++.=+ .|++.+++.+..+-
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP----~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP----MFMSEVIQAYETLH 273 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHhhc
Confidence 246778888888753 23333445556666654322 36777888777653
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.29 E-value=30 Score=43.19 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHH
Q 001307 69 PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFM 148 (1103)
Q Consensus 69 ~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l 148 (1103)
.++.+|+.|.+.+..++.+.-.. -...+.+....+...+.+.+... +..-+...-.+||.+.. |..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~-~~~c~~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~--------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCAN-TVSCPDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ--------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTT-CSSCCGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC--------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCC--------hhHHHHH
Confidence 35667777776666666542000 01234555667777777777763 44445555566665532 4566767
Q ss_pred HHhhcC-------CCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhCCC-CChHHHHHHHHHH
Q 001307 149 FQCVSS-------DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAV 209 (1103)
Q Consensus 149 ~~~~~s-------~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l 209 (1103)
..++.. ....+|..|+.+|..+....+.. +.+++.+...|. .+.++|.+|+..+
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 666532 12356777888888777654333 223444444222 3778998887666
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.20 E-value=5.7 Score=36.98 Aligned_cols=78 Identities=9% Similarity=0.189 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccC-----CCCcchHHHHHHHHHHHHh
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~ 490 (1103)
...+..|...+++.++.++..|+..|..+.+.++..+.... -..++..+.+.+.. ..+..|+..+...+.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999887764333 23456666666542 1357899999999999998
Q ss_pred cCCc
Q 001307 491 NCTP 494 (1103)
Q Consensus 491 ~~~~ 494 (1103)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8764
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.28 E-value=33 Score=42.78 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHhcccCCC-C-----cchhHHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 001307 117 AKSISKKLCDTVSELASNILPEN-G-----WPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1103)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~-~-----w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (1103)
++.+|+.+.-+++.++....... . .+.+...+.+.+...+...+..++.+||.+-
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 45566666666666655433211 1 1223333333334444444555555555443
No 130
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=84.17 E-value=0.34 Score=48.51 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=64.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001307 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1103)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~i 461 (1103)
+..++++++|.+|.++...++ -+.+...++|+++.||..+...+ ..
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l-------~~---------- 196 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL-------RG---------- 196 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC-------CG----------
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC-------CH----------
Confidence 446778999999998776421 13445678999999999988653 11
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001307 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (1103)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~ 528 (1103)
+.+...++| +++.||..+...+. .+.|..+ ++++..||..+...+|
T Consensus 197 -~~L~~Ll~D-~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 -DDLLELLHD-PDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -GGGGGGGGC-SSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHHcC-CCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 235566788 89999998888742 1334444 8888999988876554
No 131
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=83.71 E-value=43 Score=34.50 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHHHhhcHHHHH----HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhc--h----hHHhhhh
Q 001307 389 PEWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--P----DLQNQFH 458 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~--~----~~~~~~~ 458 (1103)
.-+..|..-...|..+...|-..+- ++++.++..++.+.++++..|-..++.++-.+.+.+. + .+...|+
T Consensus 134 eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy 213 (321)
T 1w9c_A 134 EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYF 213 (321)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4589999999999999888765432 5678899999999999999999999998877776553 2 2334567
Q ss_pred hhhHHHHHhhccC
Q 001307 459 PQVLPALAGAMDD 471 (1103)
Q Consensus 459 ~~il~~l~~~l~~ 471 (1103)
-.++..++..+.|
T Consensus 214 ~~il~~if~VlTD 226 (321)
T 1w9c_A 214 CDILQHIFSVVTD 226 (321)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 7777778888877
No 132
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=83.05 E-value=53 Score=35.08 Aligned_cols=233 Identities=15% Similarity=0.145 Sum_probs=119.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhcc
Q 001307 232 MMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1103)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 308 (1103)
++..|...+.++|+..|...-.+|..+-.... .+++..+..++- +..-..+....+. ..++++++++.. .+
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~---~fiye~e~~~GIa-eLLeilgsIinG--fa 203 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY---RFIYETEHHNGIA-ELLEILGSIING--FA 203 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHTTCCCTTHH-HHHHHHHHHHHH--CC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHhcCcccCCCHH-HHHHHHHHHHcc--cC
Confidence 44445567788999999887777776654432 234444433332 2221111122222 457788888773 22
Q ss_pred chhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCch-hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc
Q 001307 309 PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYLA 387 (1103)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~w~~~~~e~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 387 (1103)
..... .+..-+...++.+..-.. ...+ ..-..|+..+...-+ .+...++..+....-
T Consensus 204 ~PLke---ehk~fl~~vLlPLHk~~~-----------------~~~y~~qL~ycv~qf~eKDp--~L~~~vi~~LLk~WP 261 (403)
T 3fga_B 204 LPLKE---EHKIFLLKVLLPLHKVKS-----------------LSVYHPQLAYCVVQFLEKDS--TLTEPVVMALLKYWP 261 (403)
T ss_dssp SSCCH---HHHHHHHHTTTGGGGSTT-----------------GGGTHHHHHHHHHHHHHHCG--GGHHHHHHHHHHTCC
T ss_pred CCchH---HHHHHHHHHHHHHHcCCc-----------------chhhHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCC
Confidence 11111 122222333333222110 0111 223345544444332 333334443333332
Q ss_pred CCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHH--hhhhhchhHHhhhhhhhHHH
Q 001307 388 APEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ--LSTDLGPDLQNQFHPQVLPA 464 (1103)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~--l~~~~~~~~~~~~~~~il~~ 464 (1103)
..+......-+.-+..+.+..+ ..+.+....++..+..++.++|-.|-..|+..... +...+.... ...++.++|.
T Consensus 262 ~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~-~~IlPii~p~ 340 (403)
T 3fga_B 262 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA-AKILPIMFPS 340 (403)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH-HHHHHHHHHH
Confidence 3333333344455666666544 46677788899999999999999999988765421 111111111 2234455555
Q ss_pred HHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 465 LAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
+.+.....=+..|+..+..++..+.+.-+
T Consensus 341 L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 341 LYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 55544441256788999999988776533
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.19 E-value=24 Score=31.44 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
-...+..+.+-+.+.++.++..|+..+..++..+|..|...+ ..++.-+..++.. .+..+|.++++.+...+.+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~----~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK----GHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHH
Confidence 355677778888888999999999999999999998886433 4466666666543 2346899999999999888
Q ss_pred hChhhhhhhHHHHHHHH
Q 001307 579 VGKDKFRDDAKQVMEVL 595 (1103)
Q Consensus 579 ~~~~~~~~~~~~i~~~l 595 (1103)
++.+.=.+++.++...|
T Consensus 116 f~~~~~l~~i~~~Y~~L 132 (140)
T 3ldz_A 116 FKNDPQLSLISAMIKNL 132 (140)
T ss_dssp HTTCGGGTHHHHHHHHH
T ss_pred hCCCCCchHHHHHHHHH
Confidence 76442233344444433
No 134
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=82.03 E-value=36 Score=36.19 Aligned_cols=215 Identities=9% Similarity=0.069 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHHHHHhh---cHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH-H
Q 001307 389 PEWQKHHAALIALAQIAEG---CAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL-P 463 (1103)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~---~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il-~ 463 (1103)
+.|..-...+..+..+.+. .+...+++++ +.+-.++..+.+++|+-|......|.++-..+... ..++...+ .
T Consensus 141 ~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~--R~~Irk~i~n 218 (392)
T 2jak_A 141 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL--RAYIRKQINN 218 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3455444444444444332 1122234443 46677778899999999999888887765443321 12222222 2
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHhcCCccccc-CchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhhhhhHhh
Q 001307 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKY 541 (1103)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~ll~~L~~~l~~~~-~~v~~~al~al~~l~~~~~~~~~~~ 541 (1103)
.+.+.+.......--......++.++.++... +. .+..-+...|+.+..... .........|+..+...-+. .
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~P-LKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L 293 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALP-LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----L 293 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS-CCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG----G
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch----h
Confidence 22333322112222256677777777776522 21 222223344444433332 11222333444444433222 2
Q ss_pred HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 001307 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAW 617 (1103)
Q Consensus 542 ~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~ 617 (1103)
...++..|...+-.. +..... --+.-+..+...++.+.|.+....++..+.+..++ ..-.+.+.++..|
T Consensus 294 ~~~vi~~LLk~WP~t-ns~Kev---lFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S---~hfqVAErAL~~w 362 (392)
T 2jak_A 294 TEPVVMALLKYWPKT-HSPKEV---MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS---PHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHSSCSS-CCTTHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC---SSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCC-CchHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHh
Confidence 334444454444332 211111 12344555666667677777777777777664432 1112445555444
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.41 E-value=26 Score=36.28 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=90.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHH
Q 001307 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1103)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~ 464 (1103)
+.+.+-+.+.-++..|..+...-.++...++. .-+..++....+.+...+..++.+++++..+...--..--.+..+..
T Consensus 127 L~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ 206 (339)
T 3dad_A 127 LYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQW 206 (339)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHH
Confidence 33455666677788887744321112222221 22344444556668889999999999988763221001115778888
Q ss_pred HHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHH------------HHHHHHHHhh---cCChhHHHHHHHHHHH
Q 001307 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG------------IVSKLLVLLQ---NGKQMVQEGALTALAS 529 (1103)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~------------ll~~L~~~l~---~~~~~v~~~al~al~~ 529 (1103)
+...++. ....|...|...|..+++...... +.+.. .++.|+..++ +.+..++..++..|..
T Consensus 207 lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~--~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 207 LYTLCAS-LSRLVVKTALKLLLVFVEYSENNA--PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHcC-ccHHHHHHHHHHHHHHHccCcccc--hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 8888887 778899999999999988764221 11111 1345566665 5677777777777777
Q ss_pred HHHhhh
Q 001307 530 VADSSQ 535 (1103)
Q Consensus 530 l~~~~~ 535 (1103)
+...++
T Consensus 284 lL~~ap 289 (339)
T 3dad_A 284 TLAALP 289 (339)
T ss_dssp HHHHCS
T ss_pred HHhcCC
Confidence 766554
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.36 E-value=22 Score=31.99 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcC--Ccc
Q 001307 485 VLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNAT--DKS 560 (1103)
Q Consensus 485 l~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~--~~~ 560 (1103)
+..+|+....+. .--...+..|.+-+.+.++.++..|+..+..++..+|..|...+ ..++.-|..++.... +..
T Consensus 32 ileicD~I~~~~--~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~ 109 (149)
T 3g2s_A 32 INGFCEQLNEDF--EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRT 109 (149)
T ss_dssp HHHHHHHGGGSS--SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGS
T ss_pred HHHHHHHHHCCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCC
Confidence 444555444331 23345677788888899999999999999999999999885433 456677777765321 123
Q ss_pred cchhhhHHHHHHHHHHHhhC
Q 001307 561 NRMLRAKSMECISLVGMAVG 580 (1103)
Q Consensus 561 ~~~lr~~a~~~l~~i~~~~~ 580 (1103)
+..+|.++++.+...+.+++
T Consensus 110 ~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 110 SEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999998876
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.45 E-value=7.4 Score=35.17 Aligned_cols=78 Identities=8% Similarity=0.151 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccC-----CCCcchHHHHHHHHHHHHh
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~ 490 (1103)
...+..|...+.+.+|.++..|+..|..+.+.+++.|.... ...++..|.+.+.+ ..++.|+..+...+.....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 35667777888899999999999999999999988764332 34556666666653 1467899999999999988
Q ss_pred cCCc
Q 001307 491 NCTP 494 (1103)
Q Consensus 491 ~~~~ 494 (1103)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8764
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.07 E-value=17 Score=33.42 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
-...+..|.+-+.+.++.++-.|+..+..++..+|..|...+ ..++..|..++... .+..+|.++++.+...+.+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~---~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK---AHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999999999999999999887444 34677677766532 2346899999999999887
Q ss_pred hCh
Q 001307 579 VGK 581 (1103)
Q Consensus 579 ~~~ 581 (1103)
++.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 763
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.39 E-value=10 Score=37.28 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1103)
...+..|...+++.+|.++..|+..|..+.+.+++.+.... -..++..|.+.++...++.|+..+...+....+.++.+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46677888888999999999999999999998887654332 22344444444443356789999999999998887643
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.63 E-value=29 Score=31.28 Aligned_cols=78 Identities=8% Similarity=0.189 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccC-----CCCcchHHHHHHHHHHHHh
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~ 490 (1103)
...+..|...+++.+|.++..|+..|..+.+.+++.|.... -..++..+.+.+.. ..++.|+..+...+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999988774443 35677777777653 1367899999999999988
Q ss_pred cCCc
Q 001307 491 NCTP 494 (1103)
Q Consensus 491 ~~~~ 494 (1103)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8764
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=75.03 E-value=30 Score=32.10 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcC--CcccchhhhHHHHHHHHHHH
Q 001307 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNAT--DKSNRMLRAKSMECISLVGM 577 (1103)
Q Consensus 502 ~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~--~~~~~~lr~~a~~~l~~i~~ 577 (1103)
...+..|.+-+.+.++.++-.|+..+..++..+|..|...+ ..++.-|..++.... ......+|.++++.+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999887543 356777777765321 12346789999999999998
Q ss_pred hhChhhhhhhHHHHHHHHH
Q 001307 578 AVGKDKFRDDAKQVMEVLM 596 (1103)
Q Consensus 578 ~~~~~~~~~~~~~i~~~l~ 596 (1103)
+++.+ |.+.++.+.|.
T Consensus 129 ~f~~~---~~i~~~y~~Lk 144 (171)
T 1juq_A 129 ALPEE---AKIKDAYHMLK 144 (171)
T ss_dssp HCTTC---HHHHHHHHHHH
T ss_pred HcCCC---cHHHHHHHHHH
Confidence 88732 34444444443
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.16 E-value=32 Score=33.66 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
-...+..|.+-+.+.++.++..|+..+..++...|..|...+ ..++..|..++... .+..+|.++++.+...+.+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ---VEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHH
Confidence 356677888888899999999999999999999998776433 34666666666442 2356888999999999887
Q ss_pred hCh
Q 001307 579 VGK 581 (1103)
Q Consensus 579 ~~~ 581 (1103)
+..
T Consensus 120 f~~ 122 (226)
T 3zyq_A 120 FRN 122 (226)
T ss_dssp TTT
T ss_pred hCC
Confidence 753
No 143
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=72.84 E-value=1 Score=44.99 Aligned_cols=68 Identities=26% Similarity=0.313 Sum_probs=49.3
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001307 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1103)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 460 (1103)
.+..++++++|.+|.++...+. .+.+...+.|+++.||.++...++
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l~-----------------~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRLR-----------------GDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHCC-----------------GGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-----------------HHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 3446778999999998876431 145667789999999999988754
Q ss_pred hHHHHHhhccCCCCcchHHHHHHHH
Q 001307 461 VLPALAGAMDDFQNPRVQAHAASAV 485 (1103)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al 485 (1103)
.+.+.. |+| +++.||..+...|
T Consensus 220 -~~~L~~-L~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -LEALRE-LDE-PDPEVRLAIAGRL 241 (244)
T ss_dssp -HHHHHH-CCC-CCHHHHHHHHCCC
T ss_pred -HHHHHH-ccC-CCHHHHHHHHHHh
Confidence 133333 477 8999998887654
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.79 E-value=15 Score=35.84 Aligned_cols=78 Identities=6% Similarity=0.201 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
...+..|...+...++.++..|+..|..+.+.+++.+.... -..++..+.+.+.+..+..|+..+...+......++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 45667777788999999999999999999998877663322 1234444444444435678999999999998887764
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.33 E-value=35 Score=33.22 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHh
Q 001307 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1103)
Q Consensus 501 l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1103)
-...+..|.+-+.+.++.++..|+..+..++..+|..|...+ ..++..|..++.+. .+..+|.++++.+...+.+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST---PHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHH
Confidence 445667777888889999999999999999999998876433 33666666666542 2456888899998888877
Q ss_pred hC
Q 001307 579 VG 580 (1103)
Q Consensus 579 ~~ 580 (1103)
++
T Consensus 117 f~ 118 (220)
T 1dvp_A 117 FR 118 (220)
T ss_dssp TT
T ss_pred hc
Confidence 65
No 146
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=68.68 E-value=1.1e+02 Score=31.53 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=116.6
Q ss_pred CCChhHHHHHHHHHHHhcccCCCCccccCC-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC--CCcchh
Q 001307 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE--NGWPEL 144 (1103)
Q Consensus 68 ~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~-~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~--~~w~~l 144 (1103)
.-+-+.|.-++.++.+++....+..+.... -..+..+...|+.+... +.+--..+..+...++++.-. --+.+.
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~---~diAl~~G~mLRecir~e~la~~iL~~~~ 165 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIMLRECIRHEPLAKIILWSEQ 165 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHHHHHHTSHHHHHHHHHSGG
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc---chhHhHHHHHHHHHHHhHHHHHHHhccHH
Confidence 456677777777777776654222121100 01123444445554443 222222222333222221000 001223
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHhhhhh----hhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcc
Q 001307 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (1103)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~----~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 220 (1103)
+..++++++.++-++-.-|+..+..+.... .+-+..+.+.++..+.+.+.++ +--+|..+++.|+.++..-.
T Consensus 166 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~--- 241 (341)
T 1upk_A 166 FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDRH--- 241 (341)
T ss_dssp GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSGG---
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhCch---
Confidence 345667888888777677777777776542 2334557788888888988887 99999999999999986321
Q ss_pred hHhHHHhhH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc--hHHHH----HhHHHHHHHHHHhhcC
Q 001307 221 DRDRFQDLL--PLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLR----RQLVDVVGSMLQIAEA 283 (1103)
Q Consensus 221 ~~~~~~~~i--p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~~~~~----~~~~~l~~~l~~~~~~ 283 (1103)
........+ |.-++.+..++.+....++..|+.++.-++.+. +..+. ..=..++.++-+...+
T Consensus 242 N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d 312 (341)
T 1upk_A 242 NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQND 312 (341)
T ss_dssp GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 111111111 345667777888888889899988887766432 22222 2233556655555433
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=68.47 E-value=1.1e+02 Score=31.52 Aligned_cols=143 Identities=10% Similarity=0.075 Sum_probs=84.5
Q ss_pred hcCCCHhHHHHHHHHHHHhhhh---hhhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhh
Q 001307 152 VSSDSVKLQESAFLIFAQLSQY---IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDL 228 (1103)
Q Consensus 152 ~~s~~~~~r~~al~~l~~l~~~---~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 228 (1103)
+.+++...+..++.-|..+... +..+|.. ..=+..+....... +..++..+++++..++.+.. .+..+
T Consensus 127 L~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~--~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~------Gm~gv 197 (339)
T 3dad_A 127 LYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH--SEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVD------GMLGV 197 (339)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH--TTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHH------HHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH--hccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccc------cccch
Confidence 3344444555566666664322 1122211 01123444555565 88999999999999987631 12222
Q ss_pred H--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHhHH--------HHHHHHHHhhcC-CCcchHHHHHH
Q 001307 229 L--PLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLV--------DVVGSMLQIAEA-ESLEEGTRHLA 294 (1103)
Q Consensus 229 i--p~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~--------~l~~~l~~~~~~-~~~~~~~r~~a 294 (1103)
+ |.+++.+...+.+.+..+.+.++++|..+++..+ ..+...+. ..+..++.++.. ...+.++...|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 2 5678888888888888888999998888876543 22222111 013344445531 12467888888
Q ss_pred HHHHHHHHH
Q 001307 295 IEFVITLAE 303 (1103)
Q Consensus 295 ~~~l~~l~~ 303 (1103)
+..+..+..
T Consensus 278 mtLIN~lL~ 286 (339)
T 3dad_A 278 VTLINKTLA 286 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887776
No 148
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=67.51 E-value=97 Score=30.35 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhc
Q 001307 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1103)
Q Consensus 36 ~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e 115 (1103)
+..|+-|-+..+.........+...+..+. .+..-+.|.+|..+++... ..++++....+.. + +..-
T Consensus 41 P~lR~laK~~~k~~~~~~~~~~~~~~~~L~-~~~~~E~r~~ai~~l~~~~--------k~~~~~~l~~~~~-~---l~~~ 107 (232)
T 3jxy_A 41 PERRQLLKDIIQIHTLPDQKDFQIIIRELW-DLPEREFQAAALDIMQKYK--------KHINETHIPFLEE-L---IVTK 107 (232)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGHHHHHHHHH-TSSBHHHHHHHHHHHHHTG--------GGCCGGGHHHHHH-H---HTSS
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHh-cCcHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHH-H---HccC
Confidence 345555555555543311223323333433 4566789999999887532 2344555554432 2 2223
Q ss_pred chhhHHHHHH-HHHHHHHhcccCCCCcch-hHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhh
Q 001307 116 SAKSISKKLC-DTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (1103)
Q Consensus 116 ~~~~vr~~~~-~~i~~ia~~~~~~~~w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l 193 (1103)
++..+...+| .+++.+... -|+ +.+.+..++.|++.-.|..|+..+ +. .. .......++.++...+
T Consensus 108 ~nWd~~D~~a~~~~g~~~~~------~p~~~~~~l~~W~~s~~~w~rR~ai~~~--l~-~~---~~~d~~~~~~~i~~~~ 175 (232)
T 3jxy_A 108 SWWDSVDSIVPTFLGDIFLK------HPELISAYIPKWIASDNIWLQRAAILFQ--LK-YK---QKMDEELLFWIIGQLH 175 (232)
T ss_dssp CCHHHHHHHTTTHHHHHHHH------CGGGGGGTHHHHHHSSCHHHHHHHHHTT--TT-CG---GGCCHHHHHHHHHHHT
T ss_pred CChHHHHHhhHHHHHHHHHH------CHHHHHHHHHHHhcCCchHHHHHHHHHH--HH-HH---hCCCHHHHHHHHHHhc
Confidence 5777777765 566776663 234 566788899999988888886654 21 11 1123456667777788
Q ss_pred CCCCChHHHHHHHHHHHHHHHh
Q 001307 194 TNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
.++ +.-|+.+.-.+|..+...
T Consensus 176 ~d~-~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 176 SSK-EFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp TCC-CHHHHHHHHHHHHHHTTT
T ss_pred CCH-HHHHHHHHHHHHHHHHhh
Confidence 887 899999988888777654
No 149
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=66.84 E-value=46 Score=30.29 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHH-HHhhccCC--CCcchHHHHHHHHHHHHhc
Q 001307 417 EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 417 ~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1103)
...+..|...++ .+++.++..|+..|..+.+.+++.+.... -..++.. +++.+... +...|+..+...+......
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 456677778887 58999999999999999999988774333 2345555 45555321 3458999999999998887
Q ss_pred CCc
Q 001307 492 CTP 494 (1103)
Q Consensus 492 ~~~ 494 (1103)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 763
No 150
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=66.66 E-value=38 Score=33.01 Aligned_cols=140 Identities=10% Similarity=-0.026 Sum_probs=85.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001307 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1103)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (1103)
.++.++..++.-..|..|+..++....... +.-++.+...+. -.++.+....+.+++.+... +-
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~--------~~ 122 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL--------HL 122 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH--------SG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--------Ch
Confidence 555666666777788888888775532211 123333344443 46777777766666665532 22
Q ss_pred hhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh
Q 001307 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1103)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~ 538 (1103)
..+.+.+..-..+ ++.-+|..|+.++-.. . -..+.+.+++.+...+.++...|+..+-.++..++..-++..
T Consensus 123 ~~~~~~i~~W~~s-~~~w~rR~ai~~~l~~---~----~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 123 TELPTIFALFYGA-ENFWNRRVALNLQLML---K----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp GGHHHHHHHHTTC-SSHHHHHHHHHTTTTC---G----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHH---H----HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3355667777777 7777877776654211 1 124556667766667888888899888888877776655443
Q ss_pred HhhH
Q 001307 539 QKYY 542 (1103)
Q Consensus 539 ~~~~ 542 (1103)
.+|+
T Consensus 195 ~~fl 198 (220)
T 2b6c_A 195 EELM 198 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=66.48 E-value=50 Score=30.05 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhhhhhHhhH--hhhhHH-HHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 501 LDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 501 l~~ll~~L~~~l~-~~~~~v~~~al~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
-...+..|.+-++ +.++.++-.|+..+..++..+|..|...+ ..++.- |...+....+ ....+|.++++.+...+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~-~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNN-PPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHH
Confidence 3556677777787 47889999999999999999999887543 346655 5565533222 23468999999999998
Q ss_pred HhhC
Q 001307 577 MAVG 580 (1103)
Q Consensus 577 ~~~~ 580 (1103)
.+++
T Consensus 130 ~~f~ 133 (157)
T 1elk_A 130 DAFR 133 (157)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8775
No 152
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=65.43 E-value=31 Score=30.33 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCc
Q 001307 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1103)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1103)
+..-+...+..|+.+...|+..+.|++.. ..+.+.++..+.+.+.. ..+.-+....+.+..++.+++.
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----------~~~a~~Iv~~i~~~l~~-~~~~~KL~~LYL~ndIl~ns~~ 73 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN----------KKHHSTIVYHWMKWLRR-SAYPHRLNLFYLANDVIQNCKR 73 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHhcc
Confidence 33445555667788888899998888854 24566777777777776 5667788889999999988754
No 153
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=63.73 E-value=1.1e+02 Score=29.64 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHhhc
Q 001307 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1103)
Q Consensus 36 ~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e 115 (1103)
+..|+-|-+..+.... .|......++.-|-.+..-+.|.+|+.++...... ++++....+. ..+..-
T Consensus 35 P~lR~laK~~~k~~~~-~~~~~~~~~~~~L~~s~~~E~r~la~~~l~~~~~~--------~~~~~l~~~~----~~l~~~ 101 (220)
T 2b6c_A 35 PERQALSKQLLKESHT-WPKEKLCQEIEAYYQKTEREYQYVAIDLALQNVQR--------FSLEEVVAFK----AYVPQK 101 (220)
T ss_dssp HHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGG--------CCHHHHHHGG----GGTTTT
T ss_pred HHHHHHHHHHHHHhcc-CcccchHHHHHHHHcCchhHHHHHHHHHHHHHHhh--------CCHHHHHHHH----HHhccC
Confidence 4556666555444212 12111113333333457789999999999864322 2343332222 222223
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcch-hHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHhhC
Q 001307 116 SAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT 194 (1103)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~ 194 (1103)
++..+...+|.+++.+... .|+ +.+.+.+++.|++.-.|..|+..+ + ..... .+...+++++...+.
T Consensus 102 ~nWd~~D~~a~~~~~~~~~------~~~~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~~~~---~~~~~~~~i~~~~~~ 169 (220)
T 2b6c_A 102 AWWDSVDAWRKFFGSWVAL------HLTELPTIFALFYGAENFWNRRVALNLQ--L-MLKEK---TNQDLLKKAIIYDRT 169 (220)
T ss_dssp CSHHHHHHHHHHHHHHHHH------SGGGHHHHHHHHTTCSSHHHHHHHHHTT--T-TCGGG---CCHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHHHHH------ChHHHHHHHHHHHcCCCHHHHHHHHHHH--H-HHHHC---CCHHHHHHHHHHhCC
Confidence 5778888888777777652 344 668899999999988888887644 2 22211 355677888888888
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 001307 195 NSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
|+ +.-||.+.-.+|..+...
T Consensus 170 d~-~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 170 TE-EFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp CC-CHHHHHHHHHHHHHHTTT
T ss_pred Ch-HHHHHHHHHHHHHHHHhh
Confidence 87 899999988888877654
No 154
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.53 E-value=52 Score=29.57 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCC------CChhHHHHHHHHHHHhhhhh
Q 001307 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRD------PHPRVRWAAINAIGQLSTDL 449 (1103)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d------~~~~vr~~a~~~L~~l~~~~ 449 (1103)
.+..+...+++.++.+..-|+..+..++.+|+..+...+ .+++..+...+.+ .++.||..++..+...+..+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 455666777889999999999999999999998665444 3566666666653 47899999999998888777
Q ss_pred ch
Q 001307 450 GP 451 (1103)
Q Consensus 450 ~~ 451 (1103)
+.
T Consensus 119 ~~ 120 (148)
T 1mhq_A 119 PE 120 (148)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=62.56 E-value=19 Score=31.88 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc------C-----CCCcchHHHHHH
Q 001307 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD------D-----FQNPRVQAHAAS 483 (1103)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~------~-----~~~~~v~~~a~~ 483 (1103)
.+..+++.|+..|++.++.++..|+.+|..++..-.+.+. ..+..=... ++.+. + .....||..|-.
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~-~~~r~~~~~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFR-REMQRNSVA-VRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHH-HHHHHTTHH-HHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHH-HHHHHhHHH-HHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 4578999999999999999999999999999987766653 222222222 22222 1 012468888888
Q ss_pred HHHHHHhc
Q 001307 484 AVLNFSEN 491 (1103)
Q Consensus 484 al~~l~~~ 491 (1103)
++..+...
T Consensus 124 l~~ll~d~ 131 (140)
T 1vdy_A 124 TISAIFSE 131 (140)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCc
Confidence 88877654
No 156
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=58.52 E-value=72 Score=28.48 Aligned_cols=91 Identities=8% Similarity=-0.001 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHH
Q 001307 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1103)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L 508 (1103)
++.+.|.....+|+.. ..+.+.++..+.+.+.. ..|.-+..+++.+..++.+++.....-+-..+.+.+
T Consensus 22 nSk~~I~~LT~~a~~~----------~~~a~~Iv~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f 90 (144)
T 1sz9_A 22 NSRPIITTLTKLAEEN----------ISCAQYFVDAIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLY 90 (144)
T ss_dssp CCHHHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHH
T ss_pred ccHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4556666555555432 25677888888888776 567888899999999999988542211222233333
Q ss_pred HHHhhcCChhHHHHHHHHHHHH
Q 001307 509 LVLLQNGKQMVQEGALTALASV 530 (1103)
Q Consensus 509 ~~~l~~~~~~v~~~al~al~~l 530 (1103)
.......+...|......+..=
T Consensus 91 ~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 91 KRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3444444566665555544443
No 157
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=56.01 E-value=1.6e+02 Score=29.05 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCcc-ccCCHH
Q 001307 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW-PRLSLH 99 (1103)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w-~~l~~~ 99 (1103)
.+.+.+++..+.+|+ .|..|-..|-+-.+..|+ ..+.|.+-.. .-+.+|.-.+.-. +..+ ..++..
T Consensus 2 ~~~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~-La~~LW~S~G---------tia~LLQEIisiY-p~lspp~Lt~~ 68 (268)
T 2fv2_A 2 REKIYQWINELSSPE--TRENALLELSKKRESVPD-LAPMLWHSFG---------TIAALLQEIVNIY-PSINPPTLTAH 68 (268)
T ss_dssp CHHHHHHHHHTSSTT--THHHHHHHHHHHTTTCTT-HHHHHHHSTT---------HHHHHHHHHHHTG-GGBTTBCCCHH
T ss_pred hHHHHHHHHHhcCch--hHHHHHHHHHHhhhcccc-HHHHHHhccC---------HHHHHHHHHHHHc-ccCCCcccCHH
Confidence 467788888888664 577777777665553343 3344444211 1122333333221 0001 123332
Q ss_pred HHHHHHH--HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcch-hHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhh
Q 001307 100 TQSSLKS--MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG 175 (1103)
Q Consensus 100 ~~~~ik~--~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~-ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~ 175 (1103)
.-+.+-+ .|++.+.+ .++.|....+ ...|- +.|++-...++ +.+..|-.++.+++.+++...
T Consensus 69 ~SnRVcnaLaLlQcvAs--hpetr~~Fl~------------a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd 134 (268)
T 2fv2_A 69 QSNRVCNALALLQCVAS--HPETRSAFLA------------AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE 134 (268)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTTHHHHHH------------TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHhHHHHHHHHHHHHHc--CcchhhHHHH------------ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc
Confidence 2222221 23444443 3344443211 23444 34554333322 235789999999999998644
Q ss_pred hhchhh--HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001307 176 DTLTPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1103)
Q Consensus 176 ~~l~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1103)
.++..+ -.+++|.++..+..+ +.-.+..|.-.+..++..
T Consensus 135 ~eVi~fLL~tEiiplCLrime~G-selSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 135 QEVINFLLTTEIIPLCLRIMESG-SELSKTVATFILQKILLD 175 (268)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHhhc-cHHHHHHHHHHHHHHhcc
Confidence 443332 245899999999997 888888888888887753
No 158
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=52.03 E-value=2.7e+02 Score=30.46 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhh--hhHHHHHhhccCCCCcchHHHHHHHHHHHHh
Q 001307 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
.+|.+-..||.=+|+++.+.+..- ..+. ..=..+++.+++ +++.||..|..|+..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr--~i~~~lg~K~~VM~Lm~h-~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESI--DVLDKTGGKADIMELLNH-SDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHSHHHHHHHHTSC-SSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchh--HHHHHcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 478899999999999998875421 1111 234556788888 899999999999988764
No 159
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=51.14 E-value=2.5e+02 Score=29.83 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=77.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC----HhHHHHHHHHH
Q 001307 94 PRLSLHTQSSLKSMLLQSIQL--ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS----VKLQESAFLIF 167 (1103)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~--e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~----~~~r~~al~~l 167 (1103)
..-++..++.+|..|-+.... .--+.+|+++.+.+....-..-...+-.+++..+-..+++-. ++.+.. ..
T Consensus 184 dSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~F---l~ 260 (392)
T 2jak_A 184 DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIF---LL 260 (392)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHH---HH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHH---HH
Confidence 334577777777766554443 134456777666665554432222455667766655555432 232221 12
Q ss_pred HHhhhhh-hhhchhhHHHHHHHHHHhhCCCCChHHHH-------------------HHHHHHHHHHHhcCCcchHhHHHh
Q 001307 168 AQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKI-------------------AALNAVINFIQCLTSSADRDRFQD 227 (1103)
Q Consensus 168 ~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~~~~~vr~-------------------~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1103)
..+..-. ...+..+.+++...+.+.+.. ++..-. .-+.-+..+++.+ ....|..
T Consensus 261 ~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~----~~~~f~~ 334 (392)
T 2jak_A 261 KVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI----EPSEFVK 334 (392)
T ss_dssp HTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTC----CHHHHHH
T ss_pred HHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC----CHHHHHH
Confidence 2222211 112223444444444444433 222222 2333334444433 3455666
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001307 228 LLPLMMRTLTESLNNGNEATAQEALELLI 256 (1103)
Q Consensus 228 ~ip~ll~~l~~~l~~~~~~~~~~~~~~l~ 256 (1103)
....+++.+..++.+++..+...|+..|.
T Consensus 335 i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 335 IMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 77777788888888877777777766553
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=49.79 E-value=76 Score=28.04 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc-----CCC------CChhHHHHHHHH
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-----FRD------PHPRVRWAAINA 441 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-----l~d------~~~~vr~~a~~~ 441 (1103)
..+..+++.+...+++.+|.++.=||.+|..++...++.+...+..-...|..+ ..| +...||..|-.+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 445778888888999999999999999999988655554444444333333322 212 225789988887
Q ss_pred HHHhhh
Q 001307 442 IGQLST 447 (1103)
Q Consensus 442 L~~l~~ 447 (1103)
+..+..
T Consensus 125 ~~ll~d 130 (140)
T 1vdy_A 125 ISAIFS 130 (140)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 766543
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=49.09 E-value=1.4e+02 Score=29.43 Aligned_cols=127 Identities=9% Similarity=0.101 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhchhhhHHH-----HHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhH--HhHHHHHHH--
Q 001307 860 VGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLE-- 930 (1103)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~-----l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~-- 930 (1103)
+..++..++. +++.=.++++. +.|++....+...-...|-.+++++|.+++.-.+.+..|+ ..++|.+++
T Consensus 76 aLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 76 ALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 4555556663 44433344443 4444443321111245799999999999998777777654 578888776
Q ss_pred ---------HHHHHHHHHHhhc-C-C---CchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhh
Q 001307 931 ---------AAVYGLGVCAEFG-G-S---VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 989 (1103)
Q Consensus 931 ---------~a~~~lg~l~~~~-~-~---~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~ 989 (1103)
-|+|-+..+.... | . +....+..+...|.+++..-. .+.+.....+++.|--|+..+
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~--~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLS--KEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHHTTS
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHhcC
Confidence 6666666654321 1 0 112223333344444432100 012567778888887776443
No 162
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=48.95 E-value=1.7e+02 Score=29.91 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh
Q 001307 391 WQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA 468 (1103)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~ 468 (1103)
+..+..++.++..+..... ..+..+...+++.+...+.+++..+|-++...+-.++......-..+-...++..+...
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 4456666666666554322 24446778888988888888999999999998888886543210001122334434343
Q ss_pred ccCCCCcchHHHHHHHHHHHHh
Q 001307 469 MDDFQNPRVQAHAASAVLNFSE 490 (1103)
Q Consensus 469 l~~~~~~~v~~~a~~al~~l~~ 490 (1103)
++...+.+...++.-||++++.
T Consensus 242 l~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHHHHHHHHHHHHHh
Confidence 4332456666777777777764
No 163
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=46.19 E-value=2e+02 Score=29.14 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhhhhh--hhhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHH
Q 001307 158 KLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (1103)
Q Consensus 158 ~~r~~al~~l~~l~~~~--~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~ 235 (1103)
..-+.++.-|..++..+ |..+..+--.++.-+. +.... ++.+|..|.+.+++++..- +...+.+...+|.++..
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNN--P~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNN--PPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTC--HHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccC--HHHHHHHHHhChhHHHH
Confidence 34455666655555432 2233332122222222 22333 6789999999999988752 11222233334555555
Q ss_pred HHHHHhC-------CCHHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001307 236 LTESLNN-------GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1103)
Q Consensus 236 l~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1103)
++..+.. ......+..+.++..|+.....+-...+..+...+ .+. ..+..++..+++++..+..
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly-~~~---~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVY-ERN---NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHH-HHT---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHH-ccC---CCCHHHHHHHHHHHHHHcc
Confidence 5543322 12345566677777777664322222233333332 221 2356777777776665553
No 164
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.75 E-value=2.1e+02 Score=29.03 Aligned_cols=206 Identities=14% Similarity=0.181 Sum_probs=94.0
Q ss_pred HHHHHHHHHhc--CCCCChhHHHHHHHHHHHhhhhh--chhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhc
Q 001307 416 LEQVLSMVLNS--FRDPHPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 416 l~~i~~~l~~~--l~d~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1103)
+..+...+..+ +..++...-..|+..|..++..+ +..+. .+-..++..|+ +... ..+.+++.|...|+.-+++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~-~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKII-THEFALLANLS-LNEN-LPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHH-HHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHH-hCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHcc
Confidence 33444444443 33333333445555555555433 22221 11123333443 2222 2445777777777766655
Q ss_pred CCcc------cccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccc
Q 001307 492 CTPE------ILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNR 562 (1103)
Q Consensus 492 ~~~~------~l~~~l~~ll~~L~~~l~~~---~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 562 (1103)
-++. .-..|+..+++.|...+..+ ...+.++.+.+|..|+... ..|.++ =|..|..++... +...
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F~~~---~m~~L~~ly~~~--~~d~ 174 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDLPIY---STVVLQNVYERN--NKDK 174 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--C---CHHHHHHHHHHT--TTCH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhhhhc---cHHHHHHHHccC--CCCH
Confidence 4321 01245556666555444332 3456677777777777654 334333 334555554432 2244
Q ss_pred hhhhHHHHHHHHHHHh-----------hChh---hhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCc
Q 001307 563 MLRAKSMECISLVGMA-----------VGKD---KFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (1103)
Q Consensus 563 ~lr~~a~~~l~~i~~~-----------~~~~---~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 628 (1103)
..|.++++.+..+-.. +.+. .-.|.+....+.+-++..+. ..++......+..+.+|-+..|.++
T Consensus 175 ~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k-~~dE~~~r~fF~~L~~ik~~~~~~l 253 (315)
T 3qml_C 175 QLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQNK-SIDELHTRTFFDTLYNLKKIFKSDI 253 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHhccccc
Confidence 5677777777665431 1111 11133333334444422221 1233344455667777777777665
Q ss_pred ccc
Q 001307 629 LPY 631 (1103)
Q Consensus 629 ~p~ 631 (1103)
.|.
T Consensus 254 K~~ 256 (315)
T 3qml_C 254 TIN 256 (315)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 165
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=44.84 E-value=76 Score=27.88 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=55.2
Q ss_pred hhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh-
Q 001307 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ- 535 (1103)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~- 535 (1103)
|-+..+...++.|+. ....++..+.+++.. ..+.+.++..+.+.+....+.-|-..+..+..++..+.
T Consensus 4 f~~~~l~~~L~~L~~-s~~sI~~~s~w~l~~----------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 4 FSESALEKKLSELSN-SQQSVQTLSLWLIHH----------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp CCHHHHHHHHHHCCS-STTHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHccc-cHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 334556666777776 667777777777643 13566777777777777666777788888888876553
Q ss_pred --hhhHhhHhhhhHHHHHH
Q 001307 536 --EHFQKYYDAVMPFLKAI 552 (1103)
Q Consensus 536 --~~~~~~~~~i~~~l~~~ 552 (1103)
..|...+...++.++..
T Consensus 73 ~~~~y~~~f~~~l~~~~~~ 91 (135)
T 4fu3_A 73 KGPEFTREFESVLVDAFSH 91 (135)
T ss_dssp TCSHHHHHHHTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 34555555555544443
No 166
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=42.92 E-value=1.4e+02 Score=26.95 Aligned_cols=91 Identities=8% Similarity=0.099 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHH-HHhhccCC--CCcchHHHHHHHHHHHHhc
Q 001307 417 EQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 417 ~~i~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1103)
...+..|...+.. +++.+...|+..|..+.+.++..|..... ..++.. +.+.+... ....|+..+...+......
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566677777774 68888888999999999999887643332 233432 44555431 1236999999999999988
Q ss_pred CCcccccCchHHHHHH
Q 001307 492 CTPEILTPYLDGIVSK 507 (1103)
Q Consensus 492 ~~~~~l~~~l~~ll~~ 507 (1103)
++.+.=.+++..+...
T Consensus 132 F~~~p~l~~i~~~Y~~ 147 (152)
T 3rru_A 132 FPGGVDVSEVKEVYLD 147 (152)
T ss_dssp CSSSCCCHHHHHHHHH
T ss_pred hCCCCcchHHHHHHHH
Confidence 8653212344444433
No 167
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.50 E-value=46 Score=32.82 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHH-HHHhhcHHH-HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhc
Q 001307 376 PVASEQLPAYLAAPEWQKHHAALIALA-QIAEGCAKV-MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1103)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~-~l~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~ 450 (1103)
|...+.+..++.|++.-.|.+|+..-+ .++....+. -...+..++..+...+.|++..|+.+..|+|..++...+
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 345667788888887545555555221 111111111 124677788888889999999999999999998886643
No 168
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=39.45 E-value=1.8e+02 Score=25.70 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=64.5
Q ss_pred hCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccC
Q 001307 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1103)
Q Consensus 17 ~~~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l 96 (1103)
|+.+.+.|...|..+. +..+.++.+-.++-.-.+ ..+..+..+.+.+...+.+.-++++.++|-+=+-.+.. .+-
T Consensus 1 m~fs~~~l~~kL~~L~-~sq~sIq~~s~W~l~h~~-~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk---~k~ 75 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLE-DSQESISSASKWLLLQYR-DAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK---GQK 75 (142)
T ss_dssp -CCCHHHHHHHHHTCC-SCHHHHHHHHHHHHTCGG-GHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG---GGT
T ss_pred CCCCHHHHHHHHHhcc-ccHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh---hcC
Confidence 4567889999998886 566777888888766555 34556677788887655566777888777655443210 001
Q ss_pred CHHHHHHHHHHHHHHHhh---cchhhHHHHHHHHHHHH
Q 001307 97 SLHTQSSLKSMLLQSIQL---ESAKSISKKLCDTVSEL 131 (1103)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~---e~~~~vr~~~~~~i~~i 131 (1103)
.++....+...|.+.+.. ..++.+++.+..++...
T Consensus 76 ~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 76 IIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp CCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123333333333333321 13556666666666544
No 169
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=36.61 E-value=1.8e+02 Score=25.28 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=45.0
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
+...+..|+.+.+.|+..+.|++.. ..+.+.++..+.+.+.. ..+.-+....+.+..++.++.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~----------~~~a~~iv~~i~~~l~~-~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHH----------RKHAGPIVSVWHRELRK-AKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHH-SCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHH
Confidence 3444556777888899999998854 24556677777777766 455667888899999887654
No 170
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=36.22 E-value=5.3e+02 Score=29.32 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=68.7
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH------HHH-HhHHHHHHHHHhc-CCCCChhHHHHHHHHHHH
Q 001307 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMV-KNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQ 444 (1103)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~-~~l~~i~~~l~~~-l~d~~~~vr~~a~~~L~~ 444 (1103)
.+++.-++++..++++++.....-++..+..+...... ... ..+..+...+... ...|+..+|..|..+++.
T Consensus 313 ~if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~ 392 (596)
T 4f52_E 313 YLLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQL 392 (596)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 34555667777888877766666677666655433221 000 1112223332222 346889999999999999
Q ss_pred hhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhc
Q 001307 445 LSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1103)
Q Consensus 445 l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1103)
+...++++- .| .++..+++... ++.++..++..+..-+..
T Consensus 393 ~I~~~~~e~--R~--~iL~~LL~~~~---~~~v~~~lI~~~KdeI~~ 432 (596)
T 4f52_E 393 YINKLDSQG--KY--TLFRCLLNTSN---HSGVEAFIIQNIKNQIDM 432 (596)
T ss_dssp HHHHBCHHH--HH--HHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHH--HH--HHHHHHHhcCC---ChHHHHHHHHHHHHHHHH
Confidence 998887643 22 35666665543 478888888888766544
No 171
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=30.20 E-value=42 Score=33.01 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCC-hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307 379 SEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1103)
Q Consensus 379 ~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (1103)
.+.+..+..|++ |..|.+....+... .......++..+...+.|++..||.+..|+|..++...+.
T Consensus 133 ~~~l~~W~~s~~~w~rR~ai~~~l~~~-------~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 133 SAYIPKWIASDNIWLQRAAILFQLKYK-------QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp GGTHHHHHHSSCHHHHHHHHHTTTTCG-------GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 345667777877 55555444332221 1123445666777789999999999999999998876543
No 172
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=28.77 E-value=2.4e+02 Score=25.16 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001307 1046 VSVFAEILCGKDL--ATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1102 (1103)
Q Consensus 1046 ~~~~~~~l~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1102 (1103)
..++..+|...+. .+.+++.+-..++-.+-.++-...+.+++.+|+++++..|++++
T Consensus 52 ~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYi 110 (151)
T 1k8k_G 52 TAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYI 110 (151)
T ss_dssp HHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHH
Confidence 4555666653222 23456665555554444455555699999999999999999875
No 173
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=27.99 E-value=1.9e+02 Score=25.51 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-CcchHHHHHHHHHHHHhcCC
Q 001307 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~ 493 (1103)
.+...+..|+.+...|+..+.|++.. ..+.+.++..+.+.+...+ .+.-+....+.+..++.++.
T Consensus 7 ~l~~kL~~L~~sq~sIq~~s~W~l~h----------~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk 72 (142)
T 2km4_A 7 QFTTKLNTLEDSQESISSASKWLLLQ----------YRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK 72 (142)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHTC----------GGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh
Confidence 34455667888888899998888832 2466778888888887621 44666777888888887654
No 174
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.68 E-value=2.4e+02 Score=25.02 Aligned_cols=98 Identities=8% Similarity=0.096 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCC
Q 001307 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1103)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1103)
.+-+.|+..+...+....|.-+-.+++.+..++...++.+...+...+.+.+...... .+..+|......+...-+..+
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~-~d~~~r~k~~rL~~~W~~~~~ 117 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL-VDNTTRTKLINMFKLWLNPND 117 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT-SCHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhCccc
Confidence 3556777777777777788889999999999999888777555555555555555554 456788887777777665533
Q ss_pred cccccCchHHHHHHHHHHhh
Q 001307 494 PEILTPYLDGIVSKLLVLLQ 513 (1103)
Q Consensus 494 ~~~l~~~l~~ll~~L~~~l~ 513 (1103)
.. ..-|-+..+..+-..+.
T Consensus 118 ~~-~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 118 TG-LPLFEGSALEKIEQFLI 136 (144)
T ss_dssp CS-SCSSCHHHHHHHHHHHH
T ss_pred CC-CCCCCHHHHHHHHHHHH
Confidence 22 12244455555554443
No 175
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=26.64 E-value=2.1e+02 Score=33.20 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1103)
Q Consensus 20 d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1103)
++..|..+|..+.=.+.+..++|.+.|..+..-+|+. -+++|.. =.++.||++|.-.|++ .++
T Consensus 75 ~~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~d----ALeLL~~~f~~~~VR~yAV~~L~~------------~~d 138 (696)
T 2x6h_A 75 HKKALTKFLKCINWKLEDEVTQALWMLANWAPMDVED----ALELLSPTFTHPQVRKYAVSRLAQ------------APD 138 (696)
T ss_dssp CHHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHH----HHHHHSTTCCCHHHHHHHHHHHHH------------SCH
T ss_pred ChhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHH----HHHHhcccCCCHHHHHHHHHHHHh------------CCh
Confidence 3455666666554457778889999999987645543 3444543 4679999999999987 246
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001307 99 HTQSSLKSMLLQSIQLES 116 (1103)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~ 116 (1103)
+......-+|+|+|+-|.
T Consensus 139 e~L~~YLlQLVQALKyE~ 156 (696)
T 2x6h_A 139 EDLLLYLLQLVQALKYED 156 (696)
T ss_dssp HHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 667777778999999873
No 176
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.58 E-value=1.6e+02 Score=26.41 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhHhhHh--hhhH-HHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307 501 LDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYD--AVMP-FLKAILVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 501 l~~ll~~L~~~l~~-~~~~v~~~al~al~~l~~~~~~~~~~~~~--~i~~-~l~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
-...+..|.+-+.. .++.+...|+..+..++..+|..|...+. .++. .|..++.... .....+|.++++.+...+
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHH
Confidence 34556677777764 57777888999999999999988764432 3443 2333332211 122358888999998888
Q ss_pred HhhC
Q 001307 577 MAVG 580 (1103)
Q Consensus 577 ~~~~ 580 (1103)
.+++
T Consensus 130 ~~F~ 133 (152)
T 3rru_A 130 QGFP 133 (152)
T ss_dssp TCCS
T ss_pred HHhC
Confidence 7775
No 177
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=24.29 E-value=3.7e+02 Score=23.76 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH----hhHhhhhHHHHHH
Q 001307 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ----KYYDAVMPFLKAI 552 (1103)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~----~~~~~i~~~l~~~ 552 (1103)
+-...+..|..++.... .+...++..+.+.+....+.-|-.++..+.+++...+.... +|.+.+.+.|...
T Consensus 21 ~S~~~I~~LT~~a~~~~-----~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~ 95 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAI-----KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIIST 95 (145)
T ss_dssp CCHHHHHHHHHHHHHTG-----GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHH
Confidence 33445555666554322 46678888888888877888889999999999998887322 3444444444444
Q ss_pred HhhcCCcccchhhhHHHHHHHHHH
Q 001307 553 LVNATDKSNRMLRAKSMECISLVG 576 (1103)
Q Consensus 553 l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1103)
+...... ....|.+....+...-
T Consensus 96 f~~~~~~-~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 96 FQNLYRC-PGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp HHHHTSS-CGGGHHHHHHHHHHHH
T ss_pred HHHHHhC-CHHHHHHHHHHHHHhc
Confidence 3321111 1234555555555543
No 178
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=22.30 E-value=6.3e+02 Score=25.69 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=70.3
Q ss_pred chhHHHHHHhhcC-CCHhHHHHHHHHHHHhhhhhh--hhchhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCC
Q 001307 142 PELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1103)
Q Consensus 142 ~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~--~~l~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1103)
..++..+...+.+ ..+..+..+++++..+...-. ..+..+...++..+...+.++ +..+|.++...+.++.....+
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~ 224 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHK 224 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhh
Confidence 3455455555443 245567777888877776532 223346678888888887776 899999999988888776422
Q ss_pred cchHhHHHhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHcc
Q 001307 219 SADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGT 261 (1103)
Q Consensus 219 ~~~~~~~~~~ip~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~ 261 (1103)
....+ -...++..+...++ ..+++....++-+|+.++..
T Consensus 225 ~~~~~----~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 225 DHNIE----GKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp SCCHH----HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCch----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 11111 11224444444443 24667777777777777754
No 179
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=21.81 E-value=1.3e+02 Score=21.21 Aligned_cols=44 Identities=5% Similarity=0.028 Sum_probs=30.1
Q ss_pred cCchhHHHHHHHHhCC--ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 001307 4 ESTHLQQSQLAVILGP--DSAPFETLISHLMSTSNEQRSEAELLFNLCKQ 51 (1103)
Q Consensus 4 ~~~~~~~~~~~~~~~~--d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~ 51 (1103)
-|.+..+.+.|.||.| |.+...+.|....+ ....|...|.+|..
T Consensus 2 ~~~~p~e~~Ia~L~smGfsr~da~~AL~ia~N----dv~~AtNiLlEf~~ 47 (56)
T 2juj_A 2 TASPQLSSEIENLMSQGYSYQDIQKALVIAQN----NIEMAKNILREFVS 47 (56)
T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTT----CSHHHHHHHHHSCC
T ss_pred CCCCCChHHHHHHHHcCCCHHHHHHHHHHhcc----cHHHHHHHHHHHHc
Confidence 4777888999999998 66666666654432 23557777777654
No 180
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=20.62 E-value=3.6e+02 Score=24.08 Aligned_cols=56 Identities=5% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCC--CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001307 1047 SVFAEILCGKDL--ATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1102 (1103)
Q Consensus 1047 ~~~~~~l~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1102 (1103)
..+..+|...+. .++.++.+-..++-.+-.++-...+.+++.+|+++++..|++++
T Consensus 54 ~ALk~aL~~pP~~~~~~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYi 111 (152)
T 3dwl_G 54 QGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFI 111 (152)
T ss_dssp HHHHHHTSSCCCSCSCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHH
Confidence 444555543222 23566666666655555566666699999999999999999875
Done!