Query 001309
Match_columns 1103
No_of_seqs 632 out of 3618
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 6.2E-64 1.3E-68 574.5 39.3 554 298-1090 182-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-60 6.9E-65 552.7 32.1 392 555-1074 276-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 2.5E-54 5.5E-59 477.9 26.9 378 710-1094 6-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 5.8E-51 1.3E-55 506.7 40.3 538 301-1089 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 5.6E-49 1.2E-53 461.0 38.7 434 555-1078 489-943 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 4.1E-45 8.8E-50 403.7 23.3 284 794-1090 205-490 (491)
7 COG0464 SpoVK ATPases of the A 100.0 1.5E-43 3.3E-48 422.7 35.7 407 544-1072 67-488 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 9.6E-44 2.1E-48 391.7 24.0 247 795-1070 145-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 9.9E-44 2.2E-48 408.6 23.0 297 797-1096 186-522 (802)
10 KOG0735 AAA+-type ATPase [Post 100.0 3.4E-39 7.4E-44 375.7 34.4 298 702-1030 595-894 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 5.5E-41 1.2E-45 359.9 17.3 299 788-1092 120-439 (439)
12 KOG0741 AAA+-type ATPase [Post 100.0 3.5E-40 7.6E-45 374.0 19.1 373 557-1019 325-721 (744)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 8.7E-36 1.9E-40 352.3 33.3 398 555-1088 80-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 2.9E-36 6.4E-41 342.5 20.7 250 794-1074 297-548 (752)
15 KOG0740 AAA+-type ATPase [Post 100.0 2.8E-35 6.1E-40 337.0 18.6 279 796-1092 148-427 (428)
16 KOG0652 26S proteasome regulat 100.0 2E-34 4.3E-39 304.7 18.7 245 795-1068 165-413 (424)
17 KOG0727 26S proteasome regulat 100.0 6.1E-34 1.3E-38 300.0 20.4 247 793-1068 147-397 (408)
18 KOG0728 26S proteasome regulat 100.0 2.3E-33 5E-38 295.3 20.7 244 797-1069 143-390 (404)
19 KOG0726 26S proteasome regulat 100.0 5.9E-34 1.3E-38 305.1 14.3 244 797-1069 181-428 (440)
20 KOG0731 AAA+-type ATPase conta 100.0 6.9E-33 1.5E-37 333.2 22.7 248 794-1071 304-557 (774)
21 PTZ00454 26S protease regulato 100.0 1.6E-32 3.6E-37 318.2 24.7 246 795-1069 139-388 (398)
22 COG1223 Predicted ATPase (AAA+ 100.0 6.1E-33 1.3E-37 294.1 18.5 242 797-1071 117-359 (368)
23 KOG0730 AAA+-type ATPase [Post 100.0 3.6E-33 7.7E-38 326.8 17.6 262 798-1096 182-445 (693)
24 PRK03992 proteasome-activating 100.0 1.4E-31 3E-36 310.8 24.5 250 796-1074 126-379 (389)
25 KOG0729 26S proteasome regulat 100.0 5.5E-32 1.2E-36 287.0 16.4 248 795-1071 171-422 (435)
26 PTZ00361 26 proteosome regulat 100.0 9.9E-31 2.2E-35 305.5 22.4 246 796-1070 178-427 (438)
27 TIGR01241 FtsH_fam ATP-depende 100.0 1.6E-30 3.4E-35 310.9 24.2 269 794-1092 48-320 (495)
28 COG0465 HflB ATP-dependent Zn 100.0 1.2E-30 2.5E-35 309.8 20.1 250 795-1074 144-397 (596)
29 TIGR01243 CDC48 AAA family ATP 100.0 9.6E-30 2.1E-34 317.1 21.5 287 797-1095 174-463 (733)
30 TIGR01242 26Sp45 26S proteasom 100.0 8.6E-29 1.9E-33 285.3 23.5 243 796-1067 117-363 (364)
31 TIGR03689 pup_AAA proteasome A 100.0 2.3E-28 5E-33 289.2 25.2 273 795-1093 176-503 (512)
32 KOG0732 AAA+-type ATPase conta 100.0 2.2E-30 4.8E-35 318.1 7.9 414 482-986 288-728 (1080)
33 CHL00176 ftsH cell division pr 100.0 3.3E-28 7.1E-33 296.1 22.9 244 795-1068 177-424 (638)
34 KOG0732 AAA+-type ATPase conta 100.0 4E-28 8.7E-33 298.4 18.2 347 682-1074 176-532 (1080)
35 PRK10733 hflB ATP-dependent me 100.0 2.6E-27 5.6E-32 290.6 23.7 250 794-1073 145-398 (644)
36 KOG0651 26S proteasome regulat 100.0 4.6E-28 9.9E-33 262.9 13.9 243 797-1068 128-374 (388)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 3E-26 6.5E-31 291.0 20.6 185 833-1024 1627-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 8.6E-26 1.9E-30 257.5 12.5 262 797-1072 215-495 (744)
39 PLN00020 ribulose bisphosphate 99.9 5.2E-24 1.1E-28 239.5 24.2 188 833-1024 145-354 (413)
40 COG1222 RPT1 ATP-dependent 26S 99.9 6.5E-24 1.4E-28 235.3 12.4 232 299-767 144-393 (406)
41 KOG0738 AAA+-type ATPase [Post 99.9 1.2E-23 2.6E-28 234.1 13.2 250 299-769 205-472 (491)
42 KOG0736 Peroxisome assembly fa 99.9 1.6E-22 3.4E-27 239.4 15.8 249 837-1095 432-682 (953)
43 TIGR02639 ClpA ATP-dependent C 99.9 5.8E-20 1.3E-24 229.4 32.9 378 542-1022 263-712 (731)
44 KOG0735 AAA+-type ATPase [Post 99.9 1.3E-21 2.9E-26 229.6 14.1 260 802-1095 409-677 (952)
45 PRK11034 clpA ATP-dependent Cl 99.9 1.5E-19 3.2E-24 224.2 30.3 165 802-986 459-668 (758)
46 KOG0737 AAA+-type ATPase [Post 99.8 4.6E-21 1E-25 214.0 12.8 233 286-737 72-317 (386)
47 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-18 2.4E-23 195.4 19.6 237 801-1062 23-281 (287)
48 KOG0739 AAA+-type ATPase [Post 99.8 1.6E-19 3.5E-24 195.3 8.1 222 287-729 115-348 (439)
49 TIGR02880 cbbX_cfxQ probable R 99.8 3.3E-18 7.1E-23 191.4 18.7 237 802-1063 23-281 (284)
50 KOG0742 AAA+-type ATPase [Post 99.8 6.7E-18 1.5E-22 188.7 19.4 207 798-1015 352-586 (630)
51 TIGR02881 spore_V_K stage V sp 99.8 3.5E-18 7.6E-23 188.8 17.1 216 800-1027 5-244 (261)
52 CHL00095 clpC Clp protease ATP 99.8 1.3E-16 2.9E-21 201.6 31.6 203 801-1023 509-783 (821)
53 KOG0744 AAA+-type ATPase [Post 99.8 1.5E-18 3.3E-23 189.9 11.6 197 788-986 129-342 (423)
54 TIGR03345 VI_ClpV1 type VI sec 99.8 1.6E-16 3.4E-21 200.6 30.7 201 801-1024 566-833 (852)
55 PF00004 AAA: ATPase family as 99.8 4.4E-18 9.4E-23 166.0 12.9 130 839-970 1-132 (132)
56 KOG0734 AAA+-type ATPase conta 99.8 2.3E-18 5E-23 197.5 11.2 221 291-733 289-523 (752)
57 PRK10865 protein disaggregatio 99.7 4.5E-16 9.9E-21 196.9 28.0 173 800-986 567-781 (857)
58 CHL00195 ycf46 Ycf46; Provisio 99.7 2.6E-17 5.7E-22 195.7 14.5 239 294-769 216-466 (489)
59 TIGR03346 chaperone_ClpB ATP-d 99.7 1.5E-15 3.3E-20 192.6 30.9 204 801-1024 565-828 (852)
60 COG0464 SpoVK ATPases of the A 99.7 1.4E-16 3E-21 191.2 18.2 248 820-1095 3-252 (494)
61 COG0542 clpA ATP-binding subun 99.7 1.1E-15 2.5E-20 186.7 25.5 366 545-986 251-707 (786)
62 PF05496 RuvB_N: Holliday junc 99.7 2.8E-16 6.1E-21 167.8 13.9 197 798-1017 21-225 (233)
63 CHL00206 ycf2 Ycf2; Provisiona 99.7 9.9E-17 2.2E-21 205.6 11.8 132 539-735 1718-1861(2281)
64 KOG0743 AAA+-type ATPase [Post 99.7 6.3E-16 1.4E-20 177.3 17.1 220 797-1027 197-429 (457)
65 PRK03992 proteasome-activating 99.7 3.3E-16 7.1E-21 182.6 13.2 234 299-768 124-374 (389)
66 KOG0731 AAA+-type ATPase conta 99.7 2.1E-16 4.6E-21 191.6 11.3 221 295-735 300-537 (774)
67 PTZ00454 26S protease regulato 99.7 3.5E-16 7.5E-21 182.4 12.2 215 299-734 138-369 (398)
68 TIGR02639 ClpA ATP-dependent C 99.6 2.9E-15 6.4E-20 187.4 19.2 185 798-1007 179-386 (731)
69 KOG0726 26S proteasome regulat 99.6 2.1E-16 4.6E-21 170.9 6.5 142 540-764 265-424 (440)
70 TIGR00635 ruvB Holliday juncti 99.6 1.3E-14 2.8E-19 163.3 21.0 198 799-1019 2-207 (305)
71 COG2256 MGS1 ATPase related to 99.6 9.7E-15 2.1E-19 165.2 19.0 181 797-1018 20-217 (436)
72 PRK00080 ruvB Holliday junctio 99.6 2.3E-14 4.9E-19 163.6 22.1 200 798-1020 22-229 (328)
73 KOG0740 AAA+-type ATPase [Post 99.6 1.5E-15 3.2E-20 175.4 11.2 211 302-733 149-373 (428)
74 KOG0728 26S proteasome regulat 99.6 1E-15 2.2E-20 162.7 8.4 143 541-764 228-386 (404)
75 PTZ00361 26 proteosome regulat 99.6 3.2E-15 7E-20 175.6 11.2 230 301-766 178-424 (438)
76 TIGR01241 FtsH_fam ATP-depende 99.6 2.4E-15 5.2E-20 180.6 10.2 216 296-733 45-277 (495)
77 TIGR00763 lon ATP-dependent pr 99.6 2.6E-14 5.6E-19 180.0 18.5 212 802-1025 321-558 (775)
78 TIGR02902 spore_lonB ATP-depen 99.6 3.3E-14 7.1E-19 171.9 18.6 200 797-1021 61-312 (531)
79 PRK11034 clpA ATP-dependent Cl 99.6 4.3E-14 9.3E-19 175.9 17.6 197 799-1019 184-407 (758)
80 PRK12323 DNA polymerase III su 99.6 1.2E-13 2.5E-18 166.4 20.3 185 797-1018 12-230 (700)
81 COG0465 HflB ATP-dependent Zn 99.6 6.2E-15 1.3E-19 176.4 9.0 122 551-736 236-375 (596)
82 KOG0729 26S proteasome regulat 99.5 9.3E-15 2E-19 156.5 9.0 126 541-733 258-400 (435)
83 CHL00176 ftsH cell division pr 99.5 1.7E-14 3.8E-19 176.6 12.2 219 295-734 172-406 (638)
84 COG2255 RuvB Holliday junction 99.5 2.1E-13 4.5E-18 148.5 18.8 189 797-1007 22-218 (332)
85 KOG0652 26S proteasome regulat 99.5 1.7E-14 3.7E-19 154.2 8.7 127 542-734 253-395 (424)
86 PRK14956 DNA polymerase III su 99.5 2E-13 4.3E-18 160.9 18.4 183 797-1016 14-225 (484)
87 TIGR03345 VI_ClpV1 type VI sec 99.5 3E-13 6.5E-18 171.1 20.7 185 798-1007 184-391 (852)
88 PRK07003 DNA polymerase III su 99.5 2.5E-13 5.4E-18 165.3 18.3 185 797-1018 12-225 (830)
89 CHL00095 clpC Clp protease ATP 99.5 8.6E-13 1.9E-17 167.3 21.7 184 799-1007 177-382 (821)
90 PRK14949 DNA polymerase III su 99.5 6.6E-13 1.4E-17 164.3 19.4 190 797-1017 12-224 (944)
91 TIGR01242 26Sp45 26S proteasom 99.5 1E-13 2.2E-18 160.5 11.5 127 542-734 204-346 (364)
92 PRK14962 DNA polymerase III su 99.5 1.2E-12 2.6E-17 155.9 20.1 183 797-1016 10-221 (472)
93 KOG0727 26S proteasome regulat 99.5 1.3E-13 2.9E-18 146.8 10.6 216 297-733 146-378 (408)
94 PRK07994 DNA polymerase III su 99.5 8.7E-13 1.9E-17 161.0 19.0 184 797-1017 12-224 (647)
95 PRK10733 hflB ATP-dependent me 99.5 1.3E-13 2.7E-18 170.3 11.8 125 544-734 235-375 (644)
96 PRK14960 DNA polymerase III su 99.5 9.7E-13 2.1E-17 158.9 18.6 185 797-1018 11-224 (702)
97 KOG2028 ATPase related to the 99.5 1.1E-12 2.5E-17 145.8 17.5 178 797-1014 134-338 (554)
98 PRK10865 protein disaggregatio 99.5 4.8E-13 1E-17 169.7 16.8 182 799-1005 176-380 (857)
99 PRK13342 recombination factor 99.5 2.1E-12 4.6E-17 152.0 20.3 181 798-1019 9-202 (413)
100 PRK14961 DNA polymerase III su 99.5 1.4E-12 3E-17 151.1 18.2 185 797-1018 12-225 (363)
101 TIGR00390 hslU ATP-dependent p 99.4 7E-13 1.5E-17 153.3 15.0 179 802-980 13-342 (441)
102 PRK14958 DNA polymerase III su 99.4 1.3E-12 2.8E-17 157.0 17.9 185 797-1018 12-225 (509)
103 TIGR03346 chaperone_ClpB ATP-d 99.4 1.5E-12 3.1E-17 165.7 19.2 185 798-1007 170-377 (852)
104 PRK04195 replication factor C 99.4 2.1E-12 4.6E-17 154.9 19.1 187 797-1014 10-204 (482)
105 COG1223 Predicted ATPase (AAA+ 99.4 2.9E-13 6.2E-18 145.2 10.2 128 540-733 197-337 (368)
106 PRK05342 clpX ATP-dependent pr 99.4 9.7E-13 2.1E-17 154.2 15.6 187 795-981 64-322 (412)
107 KOG2004 Mitochondrial ATP-depe 99.4 1.5E-12 3.4E-17 154.6 17.0 174 801-986 411-598 (906)
108 PLN03025 replication factor C 99.4 2.5E-12 5.4E-17 146.4 18.2 181 797-1015 9-202 (319)
109 TIGR02928 orc1/cdc6 family rep 99.4 7.5E-12 1.6E-16 144.2 22.3 202 801-1023 15-256 (365)
110 PRK06645 DNA polymerase III su 99.4 2.5E-12 5.5E-17 153.9 18.7 185 797-1018 17-234 (507)
111 PRK14964 DNA polymerase III su 99.4 2.5E-12 5.5E-17 152.9 18.4 185 797-1018 9-222 (491)
112 PRK07940 DNA polymerase III su 99.4 2.1E-12 4.6E-17 150.6 17.2 192 799-1015 3-216 (394)
113 PRK00411 cdc6 cell division co 99.4 8.7E-12 1.9E-16 145.2 21.4 200 801-1021 30-262 (394)
114 PRK08691 DNA polymerase III su 99.4 3.9E-12 8.5E-17 154.9 19.0 186 797-1019 12-226 (709)
115 PRK00149 dnaA chromosomal repl 99.4 4.3E-12 9.4E-17 150.9 18.7 168 837-1018 149-327 (450)
116 COG0466 Lon ATP-dependent Lon 99.4 9.4E-13 2E-17 157.5 12.7 172 802-985 324-509 (782)
117 TIGR00362 DnaA chromosomal rep 99.4 8.3E-12 1.8E-16 146.6 19.9 167 837-1018 137-315 (405)
118 PRK14951 DNA polymerase III su 99.4 5.7E-12 1.2E-16 153.6 19.0 185 797-1018 12-230 (618)
119 PRK05201 hslU ATP-dependent pr 99.4 3.9E-12 8.4E-17 147.3 16.0 179 802-980 16-344 (443)
120 PRK14969 DNA polymerase III su 99.4 5.9E-12 1.3E-16 152.2 18.2 185 797-1018 12-225 (527)
121 PRK14957 DNA polymerase III su 99.4 8E-12 1.7E-16 150.6 18.8 185 797-1018 12-225 (546)
122 KOG0989 Replication factor C, 99.4 5.9E-12 1.3E-16 138.6 15.2 183 797-1013 32-231 (346)
123 PRK05563 DNA polymerase III su 99.4 9.4E-12 2E-16 151.4 18.7 183 797-1016 12-223 (559)
124 PRK14963 DNA polymerase III su 99.4 1.2E-11 2.5E-16 148.6 18.6 184 797-1017 10-221 (504)
125 PRK12422 chromosomal replicati 99.4 3E-11 6.6E-16 143.2 21.6 168 836-1017 141-317 (445)
126 PRK14959 DNA polymerase III su 99.4 1.4E-11 3.1E-16 149.4 18.9 181 797-1013 12-221 (624)
127 TIGR02397 dnaX_nterm DNA polym 99.4 1.5E-11 3.2E-16 141.1 18.1 186 797-1019 10-224 (355)
128 PHA02544 44 clamp loader, smal 99.4 2.2E-11 4.8E-16 137.8 19.3 157 797-985 17-174 (316)
129 PRK05896 DNA polymerase III su 99.4 1.5E-11 3.3E-16 148.5 18.9 183 797-1016 12-223 (605)
130 PRK12402 replication factor C 99.4 1.8E-11 4E-16 139.1 18.7 188 797-1016 11-229 (337)
131 PF05673 DUF815: Protein of un 99.4 1.7E-11 3.7E-16 132.9 17.4 189 797-1015 23-243 (249)
132 PRK13341 recombination factor 99.4 2.2E-11 4.7E-16 151.4 20.2 182 797-1019 24-223 (725)
133 PRK14952 DNA polymerase III su 99.4 1.9E-11 4.2E-16 148.4 19.2 183 797-1016 9-222 (584)
134 TIGR00382 clpX endopeptidase C 99.3 9.7E-12 2.1E-16 145.3 15.6 185 798-982 73-329 (413)
135 PRK07764 DNA polymerase III su 99.3 1.5E-11 3.3E-16 154.4 18.2 182 797-1015 11-223 (824)
136 PLN00020 ribulose bisphosphate 99.3 5.2E-12 1.1E-16 143.4 12.6 129 540-733 194-353 (413)
137 PRK08903 DnaA regulatory inact 99.3 7E-11 1.5E-15 127.8 20.9 178 797-1016 14-202 (227)
138 TIGR03689 pup_AAA proteasome A 99.3 4E-12 8.7E-17 151.8 11.4 126 541-733 273-412 (512)
139 TIGR03420 DnaA_homol_Hda DnaA 99.3 5.1E-11 1.1E-15 128.1 18.8 185 798-1019 12-207 (226)
140 PTZ00112 origin recognition co 99.3 2.6E-11 5.7E-16 148.1 18.2 181 801-1003 755-969 (1164)
141 COG2812 DnaX DNA polymerase II 99.3 1.5E-11 3.3E-16 146.1 15.6 193 797-1020 12-227 (515)
142 PRK14965 DNA polymerase III su 99.3 2.7E-11 5.8E-16 148.0 18.0 175 797-1007 12-215 (576)
143 PRK08084 DNA replication initi 99.3 1.3E-10 2.9E-15 126.9 21.5 183 797-1016 18-212 (235)
144 PRK07133 DNA polymerase III su 99.3 4E-11 8.7E-16 147.4 18.9 188 797-1015 14-221 (725)
145 PRK06647 DNA polymerase III su 99.3 3.9E-11 8.4E-16 145.8 18.6 184 797-1017 12-224 (563)
146 PRK14088 dnaA chromosomal repl 99.3 3.4E-11 7.3E-16 142.9 17.1 167 837-1017 131-309 (440)
147 PRK10787 DNA-binding ATP-depen 99.3 3.4E-11 7.5E-16 151.2 17.4 171 802-985 323-507 (784)
148 PRK06893 DNA replication initi 99.3 2E-10 4.3E-15 125.1 20.8 157 837-1015 40-205 (229)
149 PRK14970 DNA polymerase III su 99.3 8E-11 1.7E-15 136.4 18.8 185 797-1016 13-212 (367)
150 TIGR02640 gas_vesic_GvpN gas v 99.3 7.3E-11 1.6E-15 130.9 17.6 141 837-984 22-198 (262)
151 KOG0651 26S proteasome regulat 99.3 1.1E-11 2.3E-16 136.3 10.8 127 541-733 213-355 (388)
152 PRK08727 hypothetical protein; 99.3 2.9E-10 6.3E-15 124.1 21.7 146 837-1005 42-197 (233)
153 PRK06305 DNA polymerase III su 99.3 9.1E-11 2E-15 139.5 19.2 183 797-1016 13-225 (451)
154 PRK14086 dnaA chromosomal repl 99.3 8.3E-11 1.8E-15 142.3 19.0 166 837-1017 315-492 (617)
155 PRK08451 DNA polymerase III su 99.3 8.8E-11 1.9E-15 141.1 18.6 187 797-1020 10-225 (535)
156 PRK14953 DNA polymerase III su 99.3 8.2E-11 1.8E-15 140.9 18.3 184 797-1017 12-224 (486)
157 TIGR02903 spore_lon_C ATP-depe 99.3 1.5E-10 3.2E-15 142.5 20.2 231 797-1067 150-430 (615)
158 CHL00081 chlI Mg-protoporyphyr 99.3 9.6E-11 2.1E-15 134.4 16.7 166 797-984 13-232 (350)
159 PRK09111 DNA polymerase III su 99.2 1.3E-10 2.7E-15 142.1 18.4 190 797-1017 20-237 (598)
160 PRK14948 DNA polymerase III su 99.2 1.4E-10 2.9E-15 142.6 18.6 182 797-1015 12-224 (620)
161 PRK14087 dnaA chromosomal repl 99.2 3.1E-10 6.6E-15 135.0 20.3 168 837-1019 142-325 (450)
162 PRK13407 bchI magnesium chelat 99.2 1.2E-10 2.7E-15 133.1 16.0 165 798-984 5-216 (334)
163 PRK14955 DNA polymerase III su 99.2 1.9E-10 4.2E-15 134.8 17.6 183 797-1016 12-231 (397)
164 PRK00440 rfc replication facto 99.2 2.9E-10 6.3E-15 128.2 17.9 184 797-1018 13-208 (319)
165 PRK14954 DNA polymerase III su 99.2 3.4E-10 7.4E-15 138.6 19.0 180 797-1007 12-223 (620)
166 COG1221 PspF Transcriptional r 99.2 5E-11 1.1E-15 137.9 10.9 270 714-1023 8-311 (403)
167 PRK06620 hypothetical protein; 99.2 6.8E-10 1.5E-14 119.8 19.0 143 837-1016 45-192 (214)
168 cd00009 AAA The AAA+ (ATPases 99.2 1.7E-10 3.8E-15 112.3 12.9 141 805-969 2-150 (151)
169 PRK14950 DNA polymerase III su 99.2 3.4E-10 7.4E-15 138.9 18.3 183 797-1016 12-224 (585)
170 PRK05642 DNA replication initi 99.2 1.1E-09 2.4E-14 119.6 20.5 156 837-1015 46-210 (234)
171 COG3829 RocR Transcriptional r 99.1 7.4E-11 1.6E-15 138.6 9.1 169 797-986 241-436 (560)
172 PF00308 Bac_DnaA: Bacterial d 99.1 1.1E-09 2.3E-14 118.7 17.3 167 837-1018 35-213 (219)
173 PRK14971 DNA polymerase III su 99.1 1E-09 2.3E-14 134.8 18.6 182 797-1015 13-224 (614)
174 PHA02244 ATPase-like protein 99.1 7.2E-10 1.6E-14 127.0 15.8 129 837-973 120-263 (383)
175 TIGR02030 BchI-ChlI magnesium 99.1 1.1E-09 2.5E-14 125.4 16.7 164 799-984 2-219 (337)
176 COG1474 CDC6 Cdc6-related prot 99.1 3.7E-09 7.9E-14 122.6 20.5 200 802-1024 18-248 (366)
177 PRK05564 DNA polymerase III su 99.1 2.5E-09 5.4E-14 121.6 18.2 173 799-1008 2-186 (313)
178 TIGR02442 Cob-chelat-sub cobal 99.1 9.2E-10 2E-14 136.2 15.8 165 799-985 2-215 (633)
179 TIGR01650 PD_CobS cobaltochela 99.1 2.6E-10 5.6E-15 129.2 9.8 142 837-984 65-233 (327)
180 COG3604 FhlA Transcriptional r 99.1 4.9E-10 1.1E-14 130.3 11.7 201 797-1021 219-456 (550)
181 KOG0991 Replication factor C, 99.1 1.1E-09 2.5E-14 116.4 13.3 186 798-1017 24-219 (333)
182 COG2204 AtoC Response regulato 99.1 2.2E-10 4.9E-15 134.6 8.7 205 799-1024 139-377 (464)
183 PRK09112 DNA polymerase III su 99.1 3.5E-09 7.6E-14 122.2 17.3 184 797-1011 19-239 (351)
184 TIGR02974 phageshock_pspF psp 99.0 1.1E-09 2.4E-14 125.5 12.9 197 804-1021 2-233 (329)
185 COG2607 Predicted ATPase (AAA+ 99.0 8.8E-09 1.9E-13 110.6 17.5 189 797-1015 56-275 (287)
186 COG0714 MoxR-like ATPases [Gen 99.0 1.4E-09 3.1E-14 124.5 11.9 161 803-984 26-203 (329)
187 COG0593 DnaA ATPase involved i 99.0 1.9E-08 4.1E-13 117.1 21.1 167 836-1017 113-290 (408)
188 smart00350 MCM minichromosome 99.0 4.6E-09 1E-13 127.0 16.6 175 802-986 204-402 (509)
189 PRK09087 hypothetical protein; 99.0 6.4E-09 1.4E-13 113.2 15.9 137 837-1004 45-187 (226)
190 PRK07471 DNA polymerase III su 99.0 5.6E-09 1.2E-13 121.2 16.4 182 797-1011 15-237 (365)
191 COG0542 clpA ATP-binding subun 99.0 3.6E-09 7.9E-14 130.4 14.9 182 799-1005 168-372 (786)
192 TIGR01817 nifA Nif-specific re 99.0 1E-09 2.2E-14 133.4 10.1 206 797-1023 192-430 (534)
193 TIGR02329 propionate_PrpR prop 99.0 1.5E-09 3.4E-14 131.0 11.4 202 798-1020 209-449 (526)
194 PRK15424 propionate catabolism 99.0 2.4E-09 5.2E-14 129.4 13.0 202 798-1020 216-464 (538)
195 PRK11608 pspF phage shock prot 99.0 2.7E-09 5.8E-14 122.2 12.1 201 799-1020 4-239 (326)
196 COG1224 TIP49 DNA helicase TIP 99.0 1.6E-08 3.4E-13 113.6 17.6 129 896-1068 292-433 (450)
197 PRK07399 DNA polymerase III su 99.0 4.9E-09 1.1E-13 119.4 14.0 181 799-1012 2-221 (314)
198 PRK15429 formate hydrogenlyase 99.0 5.1E-09 1.1E-13 131.0 15.1 204 798-1022 373-610 (686)
199 PRK05022 anaerobic nitric oxid 99.0 3.6E-09 7.9E-14 128.0 13.2 203 799-1022 185-421 (509)
200 PRK11388 DNA-binding transcrip 98.9 2E-09 4.4E-14 133.6 10.7 203 798-1021 322-554 (638)
201 TIGR00678 holB DNA polymerase 98.9 9.9E-09 2.1E-13 108.0 14.4 144 835-1005 13-184 (188)
202 COG1219 ClpX ATP-dependent pro 98.9 3.6E-09 7.8E-14 117.1 11.3 116 798-913 57-180 (408)
203 PF01078 Mg_chelatase: Magnesi 98.9 3.9E-10 8.5E-15 120.1 3.5 46 799-860 1-46 (206)
204 smart00382 AAA ATPases associa 98.9 5.1E-09 1.1E-13 100.7 10.6 127 837-971 3-147 (148)
205 PF07728 AAA_5: AAA domain (dy 98.9 2.5E-10 5.3E-15 113.9 1.3 112 838-962 1-139 (139)
206 PRK10820 DNA-binding transcrip 98.9 5.1E-09 1.1E-13 126.9 12.7 204 797-1021 200-437 (520)
207 TIGR00764 lon_rel lon-related 98.9 2.2E-08 4.7E-13 123.3 17.3 50 798-863 15-64 (608)
208 TIGR02031 BchD-ChlD magnesium 98.9 1.3E-08 2.8E-13 125.0 14.7 142 836-985 16-175 (589)
209 COG0470 HolB ATPase involved i 98.9 1.3E-08 2.8E-13 115.0 13.5 148 802-980 2-177 (325)
210 COG1239 ChlI Mg-chelatase subu 98.9 3E-08 6.6E-13 114.3 16.3 166 798-986 14-234 (423)
211 TIGR03015 pepcterm_ATPase puta 98.9 1.1E-07 2.3E-12 105.1 19.5 191 837-1068 44-267 (269)
212 PF07726 AAA_3: ATPase family 98.8 1.3E-09 2.8E-14 107.8 3.2 118 838-963 1-130 (131)
213 PRK05707 DNA polymerase III su 98.8 3.4E-08 7.4E-13 113.2 15.2 153 834-1009 20-200 (328)
214 PF00158 Sigma54_activat: Sigm 98.8 3.2E-09 6.9E-14 110.5 6.2 128 803-950 1-143 (168)
215 PRK04132 replication factor C 98.8 2.9E-08 6.3E-13 124.7 15.7 157 834-1013 562-732 (846)
216 PRK11331 5-methylcytosine-spec 98.8 2.9E-08 6.3E-13 116.7 14.6 143 800-970 174-357 (459)
217 KOG1051 Chaperone HSP104 and r 98.8 3E-07 6.5E-12 115.2 23.8 128 801-950 562-710 (898)
218 KOG1969 DNA replication checkp 98.8 3.9E-08 8.5E-13 118.3 14.9 168 837-1019 327-513 (877)
219 PRK08058 DNA polymerase III su 98.8 5.4E-08 1.2E-12 111.7 15.6 154 799-982 3-180 (329)
220 PF07724 AAA_2: AAA domain (Cd 98.8 1.4E-08 3E-13 106.1 9.6 114 835-951 2-130 (171)
221 KOG0745 Putative ATP-dependent 98.8 6.8E-08 1.5E-12 110.6 15.7 74 837-910 227-306 (564)
222 PRK13531 regulatory ATPase Rav 98.8 1.4E-07 3.1E-12 111.8 18.4 160 802-983 21-193 (498)
223 PF06068 TIP49: TIP49 C-termin 98.8 9.1E-08 2E-12 109.2 16.1 94 896-1007 279-385 (398)
224 PF05621 TniB: Bacterial TniB 98.8 1.8E-07 3.9E-12 104.9 17.4 177 837-1024 62-272 (302)
225 TIGR00368 Mg chelatase-related 98.7 3.5E-08 7.6E-13 118.7 11.2 153 798-974 189-394 (499)
226 KOG2035 Replication factor C, 98.7 2.9E-07 6.3E-12 100.7 16.8 184 798-1012 10-228 (351)
227 TIGR02915 PEP_resp_reg putativ 98.7 3.4E-08 7.4E-13 117.2 10.7 202 800-1022 138-373 (445)
228 PRK06871 DNA polymerase III su 98.7 3.5E-07 7.6E-12 104.6 16.6 166 806-1009 7-200 (325)
229 PRK07993 DNA polymerase III su 98.7 4E-07 8.8E-12 104.7 16.6 156 834-1010 22-202 (334)
230 KOG1514 Origin recognition com 98.7 6.6E-07 1.4E-11 107.9 18.5 228 803-1071 398-659 (767)
231 COG1220 HslU ATP-dependent pro 98.7 6.8E-08 1.5E-12 107.9 9.4 68 803-870 17-84 (444)
232 PF13177 DNA_pol3_delta2: DNA 98.6 1.3E-07 2.9E-12 97.7 10.7 133 805-970 1-160 (162)
233 PTZ00111 DNA replication licen 98.6 9.3E-08 2E-12 119.8 10.9 187 781-985 439-658 (915)
234 PRK10923 glnG nitrogen regulat 98.6 1.9E-07 4.1E-12 111.7 13.2 202 799-1021 136-371 (469)
235 KOG2227 Pre-initiation complex 98.6 1.6E-06 3.4E-11 100.9 19.4 238 802-1073 151-421 (529)
236 TIGR00602 rad24 checkpoint pro 98.6 4.9E-07 1.1E-11 111.3 16.2 195 797-1013 80-324 (637)
237 PRK08769 DNA polymerase III su 98.6 7.7E-07 1.7E-11 101.6 15.9 171 806-1011 9-207 (319)
238 PRK08116 hypothetical protein; 98.6 3.6E-07 7.9E-12 102.1 11.9 161 788-972 72-250 (268)
239 PRK06964 DNA polymerase III su 98.5 7.4E-07 1.6E-11 102.6 14.2 133 834-983 19-203 (342)
240 PRK11361 acetoacetate metaboli 98.5 5E-07 1.1E-11 107.5 13.2 176 837-1021 167-376 (457)
241 PRK06090 DNA polymerase III su 98.5 1.9E-06 4.1E-11 98.4 16.3 144 806-982 8-178 (319)
242 PRK12377 putative replication 98.5 5.5E-07 1.2E-11 99.5 11.5 151 785-962 58-222 (248)
243 smart00763 AAA_PrkA PrkA AAA d 98.5 1.2E-06 2.6E-11 100.8 14.3 63 799-869 48-118 (361)
244 PRK09862 putative ATP-dependen 98.5 1.7E-06 3.7E-11 104.1 15.9 153 798-974 188-391 (506)
245 PF00498 FHA: FHA domain; Int 98.5 6.2E-07 1.3E-11 78.9 8.4 68 6-76 1-68 (68)
246 COG0606 Predicted ATPase with 98.5 7.6E-08 1.6E-12 112.5 2.9 46 798-859 176-221 (490)
247 PRK15115 response regulator Gl 98.4 1.8E-06 4E-11 102.5 14.6 176 837-1021 158-367 (444)
248 PRK13765 ATP-dependent proteas 98.4 1.5E-06 3.3E-11 107.2 13.8 48 798-861 28-75 (637)
249 PRK07952 DNA replication prote 98.4 2.2E-06 4.8E-11 94.5 13.0 109 785-907 56-174 (244)
250 COG3283 TyrR Transcriptional r 98.4 1.4E-06 3.1E-11 98.0 11.3 202 797-1019 200-430 (511)
251 PF00004 AAA: ATPase family as 98.3 6.7E-07 1.4E-11 87.2 6.3 54 542-598 46-111 (132)
252 TIGR01818 ntrC nitrogen regula 98.3 2E-06 4.4E-11 102.6 11.5 199 802-1021 135-367 (463)
253 KOG0990 Replication factor C, 98.3 1.3E-06 2.9E-11 97.5 9.1 158 797-988 37-207 (360)
254 PF14532 Sigma54_activ_2: Sigm 98.3 4E-07 8.6E-12 91.4 4.5 106 837-972 22-137 (138)
255 COG1241 MCM2 Predicted ATPase 98.3 3.4E-06 7.4E-11 103.8 13.3 176 802-987 287-486 (682)
256 PF01637 Arch_ATPase: Archaeal 98.3 2.1E-06 4.6E-11 91.4 8.9 180 804-1007 2-229 (234)
257 KOG1942 DNA helicase, TBP-inte 98.3 1.1E-05 2.4E-10 88.8 14.3 90 895-1002 296-399 (456)
258 KOG0742 AAA+-type ATPase [Post 98.3 4.8E-06 1.1E-10 95.0 11.3 128 555-726 442-587 (630)
259 PRK08699 DNA polymerase III su 98.3 5.3E-06 1.2E-10 95.2 11.8 132 834-982 19-183 (325)
260 KOG2680 DNA helicase TIP49, TB 98.2 1.8E-05 3.9E-10 87.5 14.8 129 895-1067 288-429 (454)
261 PRK13406 bchD magnesium chelat 98.2 6.5E-06 1.4E-10 100.9 12.8 131 837-975 26-173 (584)
262 PRK08181 transposase; Validate 98.2 3.1E-06 6.8E-11 94.6 8.9 69 837-907 107-179 (269)
263 PF03215 Rad17: Rad17 cell cyc 98.2 2.6E-05 5.6E-10 94.6 17.1 196 797-1013 15-264 (519)
264 KOG0480 DNA replication licens 98.2 6.6E-06 1.4E-10 98.3 11.2 218 776-1018 329-571 (764)
265 PRK10365 transcriptional regul 98.2 6.5E-06 1.4E-10 97.5 11.0 176 836-1020 162-371 (441)
266 KOG0482 DNA replication licens 98.2 1.5E-05 3.2E-10 93.1 13.0 223 779-1023 329-591 (721)
267 KOG0478 DNA replication licens 98.1 5.9E-05 1.3E-09 91.1 17.3 174 802-985 430-627 (804)
268 PF13173 AAA_14: AAA domain 98.1 9.1E-06 2E-10 80.5 8.9 69 837-907 3-73 (128)
269 PF00493 MCM: MCM2/3/5 family 98.1 4.6E-07 1E-11 104.1 -0.3 175 802-987 25-224 (331)
270 PF13401 AAA_22: AAA domain; P 98.1 1.5E-05 3.3E-10 78.0 9.7 72 837-908 5-100 (131)
271 PRK06835 DNA replication prote 98.1 6.8E-06 1.5E-10 94.4 7.8 111 837-962 184-305 (329)
272 PRK06526 transposase; Provisio 98.1 6.2E-06 1.3E-10 91.6 7.1 70 836-907 98-171 (254)
273 PRK08939 primosomal protein Dn 98.0 1.9E-05 4.2E-10 89.9 10.2 70 836-907 156-229 (306)
274 PF01695 IstB_IS21: IstB-like 98.0 4.4E-06 9.6E-11 87.9 4.6 70 835-906 46-119 (178)
275 PRK06921 hypothetical protein; 98.0 1.1E-05 2.4E-10 90.2 7.7 68 836-906 117-188 (266)
276 PRK05917 DNA polymerase III su 98.0 5.8E-05 1.3E-09 85.1 13.4 121 834-971 17-154 (290)
277 KOG0744 AAA+-type ATPase [Post 98.0 9.2E-06 2E-10 90.8 6.8 75 294-373 130-204 (423)
278 cd00060 FHA Forkhead associate 98.0 2.1E-05 4.6E-10 73.6 7.9 79 4-86 22-101 (102)
279 COG1484 DnaC DNA replication p 98.0 2.4E-05 5.3E-10 86.9 9.3 71 835-907 104-179 (254)
280 PRK09183 transposase/IS protei 98.0 2E-05 4.4E-10 87.7 8.5 71 836-907 102-176 (259)
281 PF05729 NACHT: NACHT domain 97.9 5.9E-05 1.3E-09 76.2 11.1 140 838-986 2-165 (166)
282 cd01120 RecA-like_NTPases RecA 97.9 6.3E-05 1.4E-09 75.4 9.9 71 839-909 2-99 (165)
283 PF12774 AAA_6: Hydrolytic ATP 97.9 8.8E-05 1.9E-09 81.4 11.6 130 837-979 33-175 (231)
284 COG3284 AcoR Transcriptional a 97.9 2.9E-05 6.2E-10 93.8 8.2 176 837-1020 337-539 (606)
285 PRK07276 DNA polymerase III su 97.8 0.00042 9.2E-09 78.4 16.5 118 834-970 22-162 (290)
286 PRK05818 DNA polymerase III su 97.8 0.0002 4.3E-09 79.5 13.1 122 833-971 4-147 (261)
287 PF12775 AAA_7: P-loop contain 97.8 4.5E-05 9.8E-10 85.6 8.1 139 837-986 34-195 (272)
288 PF00931 NB-ARC: NB-ARC domain 97.8 0.00019 4.1E-09 79.9 12.6 157 835-1013 18-202 (287)
289 PRK07132 DNA polymerase III su 97.8 0.00035 7.6E-09 79.5 14.8 143 835-1004 17-177 (299)
290 COG4650 RtcR Sigma54-dependent 97.8 4.8E-05 1E-09 83.9 7.0 134 837-980 209-368 (531)
291 COG1618 Predicted nucleotide k 97.6 0.00038 8.3E-09 71.7 10.9 25 836-860 5-29 (179)
292 KOG0477 DNA replication licens 97.6 5.5E-05 1.2E-09 90.3 5.6 168 779-968 436-629 (854)
293 KOG2228 Origin recognition com 97.6 0.00024 5.2E-09 80.3 9.9 161 802-984 25-219 (408)
294 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0023 5.1E-08 76.4 18.1 197 798-1017 79-316 (634)
295 CHL00181 cbbX CbbX; Provisiona 97.5 0.00037 8E-09 78.9 10.2 128 557-737 123-260 (287)
296 TIGR00763 lon ATP-dependent pr 97.5 0.00096 2.1E-08 85.3 14.7 34 344-379 347-380 (775)
297 PLN03210 Resistant to P. syrin 97.5 0.0016 3.5E-08 86.7 16.9 172 798-1005 181-388 (1153)
298 TIGR02237 recomb_radB DNA repa 97.3 0.00081 1.8E-08 71.8 9.4 75 835-909 11-111 (209)
299 COG5271 MDN1 AAA ATPase contai 97.3 0.00068 1.5E-08 87.4 9.6 137 837-984 1544-1703(4600)
300 KOG0479 DNA replication licens 97.3 0.001 2.2E-08 79.4 10.3 172 802-985 302-499 (818)
301 TIGR01618 phage_P_loop phage n 97.3 0.0006 1.3E-08 74.3 8.0 75 833-909 9-95 (220)
302 PHA00729 NTP-binding motif con 97.3 0.00051 1.1E-08 74.9 7.3 28 837-864 18-45 (226)
303 PF00910 RNA_helicase: RNA hel 97.3 0.0003 6.6E-09 67.8 5.0 23 839-861 1-23 (107)
304 COG3267 ExeA Type II secretory 97.3 0.0053 1.1E-07 67.7 14.6 173 838-1022 53-254 (269)
305 cd01124 KaiC KaiC is a circadi 97.3 0.0015 3.3E-08 68.0 10.2 71 839-909 2-109 (187)
306 PF14516 AAA_35: AAA-like doma 97.2 0.0096 2.1E-07 68.8 17.2 165 835-1007 30-234 (331)
307 PF13207 AAA_17: AAA domain; P 97.2 0.00031 6.7E-09 68.1 4.1 31 839-869 2-32 (121)
308 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.00099 2.2E-08 77.7 8.8 102 833-951 59-168 (362)
309 KOG2170 ATPase of the AAA+ sup 97.2 0.0058 1.2E-07 68.7 13.9 95 803-907 84-190 (344)
310 KOG1968 Replication factor C, 97.1 0.00084 1.8E-08 85.5 8.2 160 839-1017 360-532 (871)
311 KOG1051 Chaperone HSP104 and r 97.1 0.0027 5.9E-08 80.6 12.3 139 837-986 209-365 (898)
312 PF05707 Zot: Zonular occluden 97.1 0.0007 1.5E-08 72.1 6.1 121 839-969 3-144 (193)
313 TIGR02880 cbbX_cfxQ probable R 97.1 0.0025 5.4E-08 72.1 10.7 82 556-675 121-208 (284)
314 PF03266 NTPase_1: NTPase; In 97.1 0.00029 6.3E-09 73.6 3.0 27 838-864 1-30 (168)
315 TIGR02881 spore_V_K stage V sp 97.1 0.0048 1E-07 68.7 12.5 34 335-370 33-66 (261)
316 KOG0481 DNA replication licens 97.1 0.0017 3.6E-08 76.7 8.9 171 802-983 332-527 (729)
317 cd01121 Sms Sms (bacterial rad 97.1 0.0027 5.9E-08 74.4 10.8 98 834-931 80-196 (372)
318 PRK08118 topology modulation p 97.1 0.0012 2.7E-08 68.7 7.1 33 837-869 2-34 (167)
319 PRK00771 signal recognition pa 97.0 0.032 6.9E-07 66.9 19.6 200 835-1069 94-334 (437)
320 PRK11823 DNA repair protein Ra 97.0 0.0032 6.9E-08 75.6 10.9 97 834-930 78-193 (446)
321 PF13191 AAA_16: AAA ATPase do 97.0 0.0016 3.4E-08 67.4 7.3 59 803-872 2-63 (185)
322 PRK07261 topology modulation p 97.0 0.0018 4E-08 67.6 7.4 33 838-870 2-34 (171)
323 PRK15455 PrkA family serine pr 96.9 0.0013 2.8E-08 79.8 6.5 63 799-869 74-137 (644)
324 PRK00131 aroK shikimate kinase 96.9 0.00097 2.1E-08 68.4 4.6 34 835-868 3-36 (175)
325 PRK09361 radB DNA repair and r 96.9 0.0037 8E-08 67.7 9.2 37 834-870 21-60 (225)
326 PRK04841 transcriptional regul 96.9 0.015 3.3E-07 75.2 16.3 153 837-1007 33-220 (903)
327 PHA02624 large T antigen; Prov 96.9 0.00091 2E-08 81.5 4.6 119 837-970 432-561 (647)
328 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0042 9E-08 69.6 9.4 93 798-905 57-159 (264)
329 TIGR02012 tigrfam_recA protein 96.8 0.0071 1.5E-07 69.5 10.8 76 835-910 54-148 (321)
330 PRK00080 ruvB Holliday junctio 96.8 0.013 2.8E-07 67.5 12.9 59 304-376 23-81 (328)
331 PRK08533 flagellar accessory p 96.7 0.01 2.3E-07 65.1 11.2 75 834-908 22-130 (230)
332 PRK06581 DNA polymerase III su 96.7 0.018 3.9E-07 63.4 12.5 136 836-988 15-165 (263)
333 cd01131 PilT Pilus retraction 96.7 0.0034 7.4E-08 67.2 6.9 67 838-904 3-83 (198)
334 cd00983 recA RecA is a bacter 96.6 0.0089 1.9E-07 68.8 10.0 76 835-910 54-148 (325)
335 PF13671 AAA_33: AAA domain; P 96.6 0.004 8.6E-08 62.0 6.2 32 839-872 2-33 (143)
336 PF06309 Torsin: Torsin; Inte 96.6 0.008 1.7E-07 60.0 8.2 52 802-860 26-77 (127)
337 TIGR03354 VI_FHA type VI secre 96.6 0.0037 8.1E-08 73.8 6.8 71 3-78 23-97 (396)
338 PRK04296 thymidine kinase; Pro 96.6 0.016 3.5E-07 61.7 11.0 69 838-907 4-90 (190)
339 PRK13947 shikimate kinase; Pro 96.5 0.0024 5.1E-08 65.9 4.2 31 838-868 3-33 (171)
340 PRK09376 rho transcription ter 96.5 0.0061 1.3E-07 71.4 7.9 72 837-908 170-269 (416)
341 PRK03839 putative kinase; Prov 96.5 0.0022 4.9E-08 67.0 4.0 31 838-868 2-32 (180)
342 PRK13695 putative NTPase; Prov 96.5 0.013 2.9E-07 61.0 9.7 23 838-860 2-24 (174)
343 cd01394 radB RadB. The archaea 96.5 0.013 2.8E-07 63.1 9.8 36 835-870 18-56 (218)
344 cd00464 SK Shikimate kinase (S 96.4 0.003 6.4E-08 63.7 4.1 31 838-868 1-31 (154)
345 PF13604 AAA_30: AAA domain; P 96.4 0.0085 1.8E-07 64.1 7.7 34 837-870 19-55 (196)
346 PRK10536 hypothetical protein; 96.4 0.032 6.8E-07 62.3 12.1 45 799-859 53-97 (262)
347 PF00437 T2SE: Type II/IV secr 96.4 0.0052 1.1E-07 68.5 6.2 96 798-905 101-207 (270)
348 PRK13948 shikimate kinase; Pro 96.4 0.0036 7.9E-08 66.3 4.6 36 833-868 7-42 (182)
349 KOG3347 Predicted nucleotide k 96.4 0.0028 6.2E-08 64.5 3.5 32 837-868 8-39 (176)
350 PRK00625 shikimate kinase; Pro 96.4 0.0033 7.2E-08 66.1 4.2 31 838-868 2-32 (173)
351 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.032 7E-07 61.3 11.9 39 830-869 16-57 (237)
352 PRK14722 flhF flagellar biosyn 96.3 0.011 2.4E-07 69.3 8.6 109 836-958 137-266 (374)
353 COG1373 Predicted ATPase (AAA+ 96.3 0.025 5.5E-07 67.0 11.8 121 838-978 39-161 (398)
354 PRK14532 adenylate kinase; Pro 96.3 0.0035 7.6E-08 65.9 4.0 30 838-867 2-31 (188)
355 cd01128 rho_factor Transcripti 96.3 0.033 7.1E-07 62.0 11.8 27 836-862 16-42 (249)
356 TIGR00416 sms DNA repair prote 96.3 0.02 4.3E-07 69.1 10.8 76 834-909 92-184 (454)
357 PRK14974 cell division protein 96.3 0.031 6.6E-07 64.9 12.0 35 836-870 140-177 (336)
358 cd00544 CobU Adenosylcobinamid 96.3 0.02 4.2E-07 60.1 9.5 71 839-911 2-89 (169)
359 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0036 7.7E-08 65.4 3.9 33 839-873 2-34 (183)
360 PF04665 Pox_A32: Poxvirus A32 96.3 0.052 1.1E-06 60.1 12.9 132 835-983 12-169 (241)
361 COG5271 MDN1 AAA ATPase contai 96.2 0.013 2.9E-07 76.5 9.1 140 838-984 890-1047(4600)
362 PRK13949 shikimate kinase; Pro 96.2 0.0039 8.4E-08 65.2 3.9 32 837-868 2-33 (169)
363 TIGR02858 spore_III_AA stage I 96.2 0.0099 2.1E-07 66.9 7.4 68 837-904 112-203 (270)
364 PRK06217 hypothetical protein; 96.2 0.0043 9.4E-08 65.3 4.3 31 838-868 3-33 (183)
365 PRK12723 flagellar biosynthesi 96.2 0.03 6.5E-07 66.1 11.5 128 836-977 174-328 (388)
366 PRK14531 adenylate kinase; Pro 96.2 0.0047 1E-07 65.0 4.4 31 837-867 3-33 (183)
367 PRK06762 hypothetical protein; 96.2 0.012 2.5E-07 60.7 7.1 37 837-873 3-39 (166)
368 PHA02774 E1; Provisional 96.2 0.036 7.7E-07 67.8 12.1 33 837-869 435-468 (613)
369 cd00984 DnaB_C DnaB helicase C 96.2 0.036 7.8E-07 60.5 11.3 36 834-869 11-50 (242)
370 PF06745 KaiC: KaiC; InterPro 96.2 0.06 1.3E-06 58.4 12.9 77 830-907 14-127 (226)
371 TIGR02533 type_II_gspE general 96.2 0.018 4E-07 69.9 9.8 94 797-905 218-321 (486)
372 smart00240 FHA Forkhead associ 96.1 0.0085 1.8E-07 49.6 4.8 51 6-59 1-52 (52)
373 PRK10867 signal recognition pa 96.1 0.16 3.4E-06 61.0 17.2 73 835-907 99-195 (433)
374 TIGR02525 plasmid_TraJ plasmid 96.1 0.016 3.6E-07 67.9 8.8 68 838-905 151-235 (372)
375 COG3854 SpoIIIAA ncharacterize 96.1 0.014 3.1E-07 63.5 7.4 71 837-907 138-230 (308)
376 PRK09354 recA recombinase A; P 96.1 0.031 6.8E-07 64.9 10.8 75 835-909 59-152 (349)
377 PRK06067 flagellar accessory p 96.1 0.062 1.3E-06 58.7 12.7 75 834-908 23-133 (234)
378 TIGR01420 pilT_fam pilus retra 96.1 0.011 2.4E-07 68.7 7.2 69 837-905 123-205 (343)
379 cd02020 CMPK Cytidine monophos 96.1 0.0051 1.1E-07 61.3 3.9 30 839-868 2-31 (147)
380 PRK05800 cobU adenosylcobinami 96.1 0.022 4.8E-07 59.7 8.8 68 838-909 3-90 (170)
381 cd03283 ABC_MutS-like MutS-lik 96.1 0.032 6.9E-07 59.9 10.2 69 837-905 26-115 (199)
382 cd01428 ADK Adenylate kinase ( 96.1 0.0048 1E-07 64.8 3.8 29 839-867 2-30 (194)
383 PRK05973 replicative DNA helic 96.1 0.048 1E-06 60.3 11.6 37 833-869 61-100 (237)
384 PRK08233 hypothetical protein; 96.1 0.033 7.2E-07 57.7 9.9 33 837-869 4-37 (182)
385 COG2804 PulE Type II secretory 96.1 0.016 3.5E-07 69.4 8.3 96 795-905 232-337 (500)
386 PRK14530 adenylate kinase; Pro 96.1 0.0061 1.3E-07 65.8 4.5 30 838-867 5-34 (215)
387 KOG2543 Origin recognition com 96.0 0.044 9.5E-07 63.6 11.3 59 802-871 7-65 (438)
388 COG5245 DYN1 Dynein, heavy cha 96.0 0.035 7.7E-07 72.3 11.4 139 835-986 1493-1660(3164)
389 PRK13764 ATPase; Provisional 96.0 0.018 3.9E-07 71.2 8.8 68 837-905 258-334 (602)
390 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.025 5.4E-07 61.5 9.1 37 835-871 18-63 (235)
391 cd02021 GntK Gluconate kinase 96.0 0.0058 1.3E-07 61.8 3.8 29 839-867 2-30 (150)
392 TIGR02782 TrbB_P P-type conjug 96.0 0.021 4.5E-07 65.2 8.7 69 837-905 133-214 (299)
393 COG1485 Predicted ATPase [Gene 96.0 0.059 1.3E-06 62.1 12.1 98 833-950 62-170 (367)
394 cd01122 GP4d_helicase GP4d_hel 96.0 0.045 9.8E-07 60.9 11.3 36 834-869 28-67 (271)
395 PF10236 DAP3: Mitochondrial r 96.0 0.32 6.9E-06 55.9 18.3 127 884-1011 142-307 (309)
396 PRK10436 hypothetical protein; 96.0 0.023 5E-07 68.6 9.2 93 798-905 195-297 (462)
397 cd01393 recA_like RecA is a b 96.0 0.033 7.1E-07 60.2 9.6 38 834-871 17-63 (226)
398 PF07693 KAP_NTPase: KAP famil 96.0 0.36 7.9E-06 54.9 18.6 28 834-861 18-45 (325)
399 cd00046 DEXDc DEAD-like helica 96.0 0.013 2.7E-07 56.3 5.7 23 838-860 2-24 (144)
400 COG0563 Adk Adenylate kinase a 95.9 0.0074 1.6E-07 63.8 4.2 28 838-865 2-29 (178)
401 TIGR00635 ruvB Holliday juncti 95.9 0.067 1.5E-06 60.6 12.1 33 344-378 30-62 (305)
402 PTZ00088 adenylate kinase 1; P 95.9 0.0078 1.7E-07 66.1 4.2 32 837-868 7-38 (229)
403 PF00448 SRP54: SRP54-type pro 95.8 0.055 1.2E-06 58.1 10.6 71 836-906 1-94 (196)
404 COG0703 AroK Shikimate kinase 95.8 0.0068 1.5E-07 63.6 3.5 32 837-868 3-34 (172)
405 COG4088 Predicted nucleotide k 95.8 0.039 8.5E-07 59.3 9.1 23 838-860 3-25 (261)
406 PRK13900 type IV secretion sys 95.8 0.024 5.2E-07 65.6 8.3 69 837-905 161-245 (332)
407 cd00227 CPT Chloramphenicol (C 95.8 0.0073 1.6E-07 63.0 3.8 34 837-870 3-36 (175)
408 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.07 1.5E-06 59.6 11.7 36 834-869 34-72 (259)
409 TIGR01313 therm_gnt_kin carboh 95.8 0.0068 1.5E-07 62.2 3.4 28 839-866 1-28 (163)
410 PRK03731 aroL shikimate kinase 95.8 0.0095 2.1E-07 61.6 4.4 32 837-868 3-34 (171)
411 PRK14528 adenylate kinase; Pro 95.8 0.0091 2E-07 63.3 4.3 31 837-867 2-32 (186)
412 smart00487 DEXDc DEAD-like hel 95.8 0.044 9.6E-07 55.9 9.3 24 837-860 25-49 (201)
413 TIGR02538 type_IV_pilB type IV 95.8 0.028 6.1E-07 69.6 9.0 93 798-905 293-395 (564)
414 PRK06547 hypothetical protein; 95.8 0.01 2.2E-07 62.4 4.4 34 835-868 14-47 (172)
415 PF13479 AAA_24: AAA domain 95.7 0.035 7.7E-07 60.1 8.5 68 837-907 4-80 (213)
416 cd02027 APSK Adenosine 5'-phos 95.7 0.027 5.8E-07 57.6 7.1 33 839-871 2-37 (149)
417 TIGR01360 aden_kin_iso1 adenyl 95.7 0.01 2.3E-07 61.8 4.2 31 837-867 4-34 (188)
418 COG4619 ABC-type uncharacteriz 95.7 0.033 7.3E-07 58.1 7.6 27 834-860 27-53 (223)
419 KOG2383 Predicted ATPase [Gene 95.7 0.018 3.9E-07 67.0 6.2 159 833-1016 111-295 (467)
420 PLN02200 adenylate kinase fami 95.7 0.012 2.6E-07 64.8 4.7 37 835-873 42-78 (234)
421 PRK13946 shikimate kinase; Pro 95.6 0.0098 2.1E-07 62.8 3.8 32 837-868 11-42 (184)
422 PRK02496 adk adenylate kinase; 95.6 0.01 2.3E-07 62.2 4.1 30 838-867 3-32 (184)
423 TIGR02688 conserved hypothetic 95.6 0.014 3E-07 69.1 5.2 24 836-859 209-232 (449)
424 PRK05057 aroK shikimate kinase 95.6 0.012 2.6E-07 61.7 4.3 33 837-869 5-37 (172)
425 PRK04328 hypothetical protein; 95.6 0.1 2.2E-06 58.0 11.8 38 830-868 18-58 (249)
426 TIGR00064 ftsY signal recognit 95.6 0.3 6.5E-06 55.1 15.5 36 835-870 71-109 (272)
427 TIGR01351 adk adenylate kinase 95.6 0.011 2.3E-07 63.7 3.9 29 839-867 2-30 (210)
428 cd01130 VirB11-like_ATPase Typ 95.6 0.029 6.3E-07 59.3 7.0 70 836-905 25-110 (186)
429 PRK08154 anaerobic benzoate ca 95.5 0.021 4.5E-07 65.5 6.3 36 833-868 130-165 (309)
430 PRK00149 dnaA chromosomal repl 95.5 0.034 7.4E-07 66.9 8.4 57 301-371 117-173 (450)
431 cd03216 ABC_Carb_Monos_I This 95.5 0.053 1.2E-06 56.1 8.7 73 834-906 24-111 (163)
432 cd03243 ABC_MutS_homologs The 95.5 0.09 2E-06 56.2 10.7 21 837-857 30-50 (202)
433 COG2909 MalT ATP-dependent tra 95.5 0.13 2.8E-06 64.9 13.2 159 836-1013 37-235 (894)
434 PRK14962 DNA polymerase III su 95.5 0.17 3.7E-06 61.4 14.2 39 556-597 117-155 (472)
435 COG1066 Sms Predicted ATP-depe 95.5 0.1 2.2E-06 61.3 11.5 97 834-930 91-205 (456)
436 PRK00279 adk adenylate kinase; 95.5 0.013 2.8E-07 63.3 4.1 30 838-867 2-31 (215)
437 PRK10416 signal recognition pa 95.5 0.28 6E-06 56.7 15.1 35 835-869 113-150 (318)
438 COG1102 Cmk Cytidylate kinase 95.5 0.012 2.6E-07 60.9 3.6 28 839-866 3-30 (179)
439 PRK05342 clpX ATP-dependent pr 95.5 0.02 4.3E-07 68.2 6.0 86 295-383 59-145 (412)
440 PF13238 AAA_18: AAA domain; P 95.5 0.012 2.5E-07 57.1 3.3 22 839-860 1-22 (129)
441 TIGR03574 selen_PSTK L-seryl-t 95.4 0.029 6.3E-07 62.0 6.8 34 839-872 2-38 (249)
442 PRK11889 flhF flagellar biosyn 95.4 0.11 2.4E-06 61.2 11.7 72 836-907 241-332 (436)
443 KOG3928 Mitochondrial ribosome 95.4 0.34 7.3E-06 56.9 15.3 115 896-1015 316-458 (461)
444 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.13 2.9E-06 55.7 11.7 37 834-870 14-53 (224)
445 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.12 2.6E-06 56.1 11.3 22 837-858 30-51 (213)
446 PRK13833 conjugal transfer pro 95.4 0.052 1.1E-06 62.6 8.9 68 837-904 145-224 (323)
447 cd03115 SRP The signal recogni 95.3 0.062 1.3E-06 55.8 8.5 33 839-871 3-38 (173)
448 PF06414 Zeta_toxin: Zeta toxi 95.3 0.046 1E-06 58.4 7.6 66 835-900 14-98 (199)
449 cd03280 ABC_MutS2 MutS2 homolo 95.3 0.11 2.5E-06 55.4 10.5 21 837-857 29-49 (200)
450 PRK14527 adenylate kinase; Pro 95.3 0.015 3.3E-07 61.5 3.8 32 836-867 6-37 (191)
451 PRK13894 conjugal transfer ATP 95.3 0.034 7.4E-07 64.1 6.9 69 837-905 149-229 (319)
452 PF13481 AAA_25: AAA domain; P 95.3 0.073 1.6E-06 55.9 8.9 74 837-910 33-156 (193)
453 TIGR00767 rho transcription te 95.3 0.05 1.1E-06 64.2 8.2 26 836-861 168-193 (415)
454 TIGR02788 VirB11 P-type DNA tr 95.3 0.027 5.9E-07 64.5 6.0 71 835-905 143-228 (308)
455 TIGR00390 hslU ATP-dependent p 95.2 0.02 4.4E-07 67.7 5.0 69 311-383 15-84 (441)
456 PRK13851 type IV secretion sys 95.2 0.025 5.4E-07 65.8 5.6 70 836-905 162-246 (344)
457 PRK04040 adenylate kinase; Pro 95.2 0.02 4.3E-07 61.0 4.4 30 836-865 2-33 (188)
458 PF05272 VirE: Virulence-assoc 95.2 0.032 6.9E-07 60.1 5.9 105 837-962 53-162 (198)
459 PF00406 ADK: Adenylate kinase 95.2 0.017 3.8E-07 58.6 3.8 31 841-873 1-31 (151)
460 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.084 1.8E-06 53.9 8.7 71 835-906 24-109 (157)
461 PF01583 APS_kinase: Adenylyls 95.1 0.04 8.6E-07 57.2 6.2 68 837-904 3-82 (156)
462 PF08433 KTI12: Chromatin asso 95.1 0.058 1.3E-06 60.8 8.1 70 838-907 3-82 (270)
463 PRK13407 bchI magnesium chelat 95.1 0.4 8.6E-06 55.8 15.0 87 647-734 187-289 (334)
464 PLN02674 adenylate kinase 95.1 0.02 4.4E-07 63.4 4.4 33 835-867 30-62 (244)
465 smart00534 MUTSac ATPase domai 95.1 0.17 3.6E-06 53.6 11.0 19 839-857 2-20 (185)
466 PRK12724 flagellar biosynthesi 95.1 0.29 6.2E-06 58.4 13.8 35 836-870 223-261 (432)
467 PRK04182 cytidylate kinase; Pr 95.1 0.021 4.5E-07 59.0 4.0 29 838-866 2-30 (180)
468 PRK06696 uridine kinase; Valid 95.1 0.051 1.1E-06 59.1 7.2 38 836-873 22-62 (223)
469 COG2805 PilT Tfp pilus assembl 95.1 0.052 1.1E-06 61.3 7.2 70 837-906 125-209 (353)
470 PRK09519 recA DNA recombinatio 95.0 0.12 2.7E-06 65.6 11.2 76 834-909 58-152 (790)
471 COG0541 Ffh Signal recognition 95.0 3.6 7.8E-05 49.1 22.3 205 834-1069 98-341 (451)
472 COG1936 Predicted nucleotide k 95.0 0.017 3.8E-07 60.4 3.0 30 838-868 2-31 (180)
473 TIGR02173 cyt_kin_arch cytidyl 95.0 0.023 5E-07 58.3 3.9 30 838-867 2-31 (171)
474 COG1855 ATPase (PilT family) [ 94.9 0.025 5.5E-07 66.4 4.5 45 797-860 243-287 (604)
475 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.19 4.2E-06 54.5 11.2 37 833-869 17-56 (229)
476 TIGR02655 circ_KaiC circadian 94.9 0.13 2.9E-06 62.5 11.0 75 834-908 261-366 (484)
477 PRK01184 hypothetical protein; 94.9 0.022 4.9E-07 59.6 3.8 29 838-867 3-31 (184)
478 PF09848 DUF2075: Uncharacteri 94.9 0.031 6.7E-07 65.1 5.4 23 838-860 3-25 (352)
479 PRK04301 radA DNA repair and r 94.9 0.11 2.5E-06 59.6 9.7 37 835-871 101-146 (317)
480 TIGR01448 recD_rel helicase, p 94.9 0.097 2.1E-06 66.7 10.0 70 838-907 340-428 (720)
481 TIGR02236 recomb_radA DNA repa 94.8 0.13 2.9E-06 58.7 10.1 36 836-871 95-139 (310)
482 TIGR00382 clpX endopeptidase C 94.8 0.045 9.7E-07 65.1 6.3 84 296-382 66-152 (413)
483 PF13521 AAA_28: AAA domain; P 94.8 0.027 5.9E-07 57.9 3.9 26 839-865 2-27 (163)
484 TIGR00362 DnaA chromosomal rep 94.8 0.24 5.1E-06 58.8 12.3 56 301-370 105-160 (405)
485 PHA02530 pseT polynucleotide k 94.7 0.03 6.5E-07 63.3 4.4 31 837-867 3-34 (300)
486 PF01745 IPT: Isopentenyl tran 94.7 0.033 7.1E-07 60.3 4.3 37 838-874 3-39 (233)
487 cd02019 NK Nucleoside/nucleoti 94.7 0.035 7.6E-07 49.3 3.9 22 839-860 2-23 (69)
488 PF13245 AAA_19: Part of AAA d 94.6 0.052 1.1E-06 49.5 4.9 23 838-860 12-35 (76)
489 PRK00889 adenylylsulfate kinas 94.6 0.11 2.5E-06 53.9 8.2 36 836-871 4-42 (175)
490 PF13086 AAA_11: AAA domain; P 94.6 0.026 5.6E-07 60.1 3.4 22 839-860 20-41 (236)
491 PRK14526 adenylate kinase; Pro 94.6 0.032 6.9E-07 60.6 4.1 29 838-866 2-30 (211)
492 TIGR03499 FlhF flagellar biosy 94.6 0.17 3.7E-06 57.3 10.0 36 836-871 194-234 (282)
493 PF10443 RNA12: RNA12 protein; 94.5 1.3 2.8E-05 52.8 17.3 78 952-1029 197-299 (431)
494 PRK10263 DNA translocase FtsK; 94.5 0.19 4.1E-06 66.3 11.4 75 897-982 1142-1218(1355)
495 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.11 2.3E-06 60.4 8.2 62 799-868 58-121 (358)
496 TIGR01526 nadR_NMN_Atrans nico 94.5 0.057 1.2E-06 62.4 6.1 35 837-871 163-197 (325)
497 cd03238 ABC_UvrA The excision 94.5 0.22 4.7E-06 52.7 9.9 26 834-859 19-44 (176)
498 PF02562 PhoH: PhoH-like prote 94.5 0.091 2E-06 56.9 7.2 23 838-860 21-43 (205)
499 PRK08099 bifunctional DNA-bind 94.5 0.065 1.4E-06 63.7 6.6 30 837-866 220-249 (399)
500 PRK12608 transcription termina 94.5 0.099 2.1E-06 61.3 7.9 24 837-860 134-157 (380)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-64 Score=574.52 Aligned_cols=554 Identities=32% Similarity=0.453 Sum_probs=423.8
Q ss_pred CccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001309 298 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 377 (1103)
Q Consensus 298 ~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 377 (1103)
....+|+|..+--. +.|-.-|..-. .|++|+++-.|+--.+ .+.+||-||||+ ...|||.|+|.+++++++-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~P--prGvLlHGPPGC--GKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRP--PRGVLLHGPPGC--GKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCC--CCceeeeCCCCc--cHHHHHHHHhhhcCCceEee
Confidence 45568899998876 55555555444 4799999865544333 478999999999 69999999999999999877
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
-...+-+|.+-|+
T Consensus 255 sApeivSGvSGES------------------------------------------------------------------- 267 (802)
T KOG0733|consen 255 SAPEIVSGVSGES------------------------------------------------------------------- 267 (802)
T ss_pred cchhhhcccCccc-------------------------------------------------------------------
Confidence 6544433222111
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchh
Q 001309 458 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 537 (1103)
Q Consensus 458 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~ 537 (1103)
T Consensus 268 -------------------------------------------------------------------------------- 267 (802)
T KOG0733|consen 268 -------------------------------------------------------------------------------- 267 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-----cC----hhhHHHHHHHHhcCC------CCEEEEeeccCCCCc
Q 001309 538 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GN----NDAYGALKSKLENLP------SNVVVIGSHTQLDSR 602 (1103)
Q Consensus 538 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-----~~----~~~~~~l~~~L~~l~------g~vvvIgs~~~~d~~ 602 (1103)
.-.|++||+-+.+ ..|+||||||||. +. .+ +++.+.|-.-++.|. .+|||||||||+|+
T Consensus 268 -EkkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs- 341 (802)
T KOG0733|consen 268 -EKKIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS- 341 (802)
T ss_pred -HHHHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc-
Confidence 1124477766666 9999999999999 55 23 344455555555552 38999999996666
Q ss_pred cccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchh
Q 001309 603 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 680 (1103)
Q Consensus 603 k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lp 680 (1103)
||| |||| |||+++.+..|
T Consensus 342 ---------------------lDp---------------------------------------aLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 342 ---------------------LDP---------------------------------------ALRRAGRFDREICLGVP 361 (802)
T ss_pred ---------------------cCH---------------------------------------HHhccccccceeeecCC
Confidence 444 9999 99999999999
Q ss_pred hhhcccchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCC-CCccccccC--------
Q 001309 681 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTE-------- 750 (1103)
Q Consensus 681 d~~gR~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~-------- 750 (1103)
+..+|..||+|.-+ |+-.+ +.++..||.+|.||-|||+.+||.+|+..|+.|..++... ..+..++..
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 99999999999876 65555 7899999999999999999999999999999997764331 111111111
Q ss_pred ---chhhhHH-----HH----Hh-hhhhhhhhhhhhh--hhcchhHHHHhhhcCCCCCC-------CCCCCcccccCcHH
Q 001309 751 ---SIMYGLN-----IL----QG-IQSESKSLKKSLK--DVVTENEFEKKLLADVIPPS-------DIGVTFDDIGALEN 808 (1103)
Q Consensus 751 ---sI~v~~~-----df----~~-a~~eik~~~~sik--~~v~~~e~~k~ll~~iip~~-------e~~~sfddI~G~e~ 808 (1103)
+|+.... +. +. .++...+...... --+..++|+..+. .+-|.. -++++|+||+++++
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~ 518 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEE 518 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHH
Confidence 1211000 00 00 0111111110000 0123345555542 122221 13789999999999
Q ss_pred HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHH
Q 001309 809 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 888 (1103)
Q Consensus 809 ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF 888 (1103)
++.+|..++.+|+++|+.|...|+.. |.|||||||||||||.||+|+|++.+.+|+.|..++|+++|+|++|..++++|
T Consensus 519 vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 519 VRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999765 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccc
Q 001309 889 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 966 (1103)
Q Consensus 889 ~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I 966 (1103)
..|+...|||||+||||.|++.|.... .....+++++|+++|||+... ..|.|||+||+|+.+|++++| ||++.+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~L 674 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLL 674 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCcee
Confidence 999999999999999999999887644 677889999999999999654 789999999999999999999 999999
Q ss_pred ccCCCCHHHHHHHHHHHHh--hcccCCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 001309 967 MVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1042 (1103)
Q Consensus 967 ~l~lPd~eeR~eIL~~ll~--~~~l~~dvdl~~LA~~Te--GySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~ 1042 (1103)
++++|+.++|..||+.+.+ +..+.+++++++||..+. ||+|+||..||++|...|+++.+..... +.
T Consensus 675 yV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~--------~~- 745 (802)
T KOG0733|consen 675 YVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS--------SE- 745 (802)
T ss_pred eecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc--------cC-
Confidence 9999999999999999999 777889999999999887 9999999999999999999986652221 11
Q ss_pred CCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcC
Q 001309 1043 SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1090 (1103)
Q Consensus 1043 ~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~ 1090 (1103)
...........+++.||++|+++++||+++.- ...+...+..+|+
T Consensus 746 -~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d--r~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 746 -DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERD--RKKYDRLNKSRSL 790 (802)
T ss_pred -cccceeeeeeeecHHHHHHHHHhcCCCccHHH--HHHHHHHhhhhcc
Confidence 00000111346899999999999999998663 3334444444454
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-60 Score=552.72 Aligned_cols=392 Identities=32% Similarity=0.520 Sum_probs=345.9
Q ss_pred CC-CeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCCCceeeccCcchhhh
Q 001309 555 SS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 623 (1103)
Q Consensus 555 ~~-p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l 623 (1103)
.+ |+|+||+|+|. ++. ..+....+...++.+. +.||||+++|++++
T Consensus 276 ~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s---------------------- 332 (693)
T KOG0730|consen 276 FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS---------------------- 332 (693)
T ss_pred cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc----------------------
Confidence 66 99999999999 663 4566667777777776 79999999996555
Q ss_pred hcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH-HHHHHHhhchhhhhcccchhHHHHHhhhCCCCc
Q 001309 624 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDC 702 (1103)
Q Consensus 624 ~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR-Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~ 702 (1103)
||+ ++|| ||++++++..|+..+|.+|+++||+.-+.. ++
T Consensus 333 ld~---------------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~ 372 (693)
T KOG0730|consen 333 LDP---------------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SD 372 (693)
T ss_pred cCh---------------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-ch
Confidence 444 8988 999999999999999999999999733322 78
Q ss_pred cchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhHH
Q 001309 703 VDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 782 (1103)
Q Consensus 703 ~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~~~sik~~v~~~e~ 782 (1103)
++|..+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.+.- ..
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa----------~R 422 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSA----------LR 422 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchh----------hh
Confidence 99999999999999999999999999988875 4556666655444321 00
Q ss_pred HHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001309 783 EKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 862 (1103)
Q Consensus 783 ~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~ 862 (1103)
.-+ ..-++++|+||+|++++|.+|++.|.+|+.+|+.|.+.|+ .|++|||||||||||||++|+|+|++.++
T Consensus 423 -----e~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 423 -----EIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred -----hee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 111 1234789999999999999999999999999999999995 56699999999999999999999999999
Q ss_pred cEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccE
Q 001309 863 NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 942 (1103)
Q Consensus 863 ~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~V 942 (1103)
+|+.+.+++++++|+|++|+.++.+|..|+..+|+|||+||||.+...|+.... .+..+++++++++|||+... .+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcE
Confidence 999999999999999999999999999999999999999999999999874443 78899999999999999765 689
Q ss_pred EEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 943 LVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 943 lVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
+|||+||+|+.||++++| ||++.|++++||.+.|.+||+.+++++.+.+++|+..||..|+||||+||.++|++|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1021 PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1021 aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
++++.++ ...++.+||.+|++.++++....
T Consensus 652 a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 652 ALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 9998644 34589999999999999998665
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-54 Score=477.93 Aligned_cols=378 Identities=60% Similarity=0.932 Sum_probs=340.3
Q ss_pred hccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhh-hhcchhHHHHhhhc
Q 001309 710 IKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLK-DVVTENEFEKKLLA 788 (1103)
Q Consensus 710 ~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~~~sik-~~v~~~e~~k~ll~ 788 (1103)
..+..+...-++.++.+|.+|++.++..+.+.. ..++..+++.++..+|+..... .+++ .++..++++..+..
T Consensus 6 ~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s 79 (386)
T KOG0737|consen 6 TKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIAS 79 (386)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhh
Confidence 334455667889999999999998765444444 6677888888887777665433 3445 37889999999999
Q ss_pred CCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 789 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 789 ~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.+++|.++.++|+||+|++.++++|++.|.+|+++|++|..+++.+|++||||+||||||||++|+|+|++.+.+|+.|.
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec
Q 001309 869 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 948 (1103)
Q Consensus 869 ~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT 948 (1103)
++.+.++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| ...++++...+.++|+.+|||+.++.+.+|+|+|||
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999 678999999999999999999999988899999999
Q ss_pred CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 001309 949 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1028 (1103)
Q Consensus 949 N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~ 1028 (1103)
|+|.+||++++||+++++++++|+.++|.+|++.+++.+.+.+++|+.++|.+|+||||+||+++|..|++.++|+++..
T Consensus 239 NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 239 NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred H--HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCcc
Q 001309 1029 E--KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1094 (1103)
Q Consensus 1029 ~--~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~R 1094 (1103)
+ ..+.....+.....+.....-..|+++++||.+|+.++.+++..+...|....+|++.||++++|
T Consensus 319 ~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 319 ETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred cccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 6 22232233344444444555668999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.8e-51 Score=506.69 Aligned_cols=538 Identities=29% Similarity=0.444 Sum_probs=420.1
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 301 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 301 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
-+++|+++--+ +..+..|.+.....++|+++. +++ + ...+.|||.||+|| .+.+||||+|++.+++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppGt--GKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPGT--GKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCCC--ChHHHHHHHHHHhCCeEEEEec
Confidence 46889997766 888988988888888988764 232 2 34467999999999 6999999999999999877764
Q ss_pred cCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeeee
Q 001309 380 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 459 (1103)
Q Consensus 380 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~ 459 (1103)
..+.+ +|
T Consensus 246 ~~i~~-------------------------------------------------------------------------~~ 252 (733)
T TIGR01243 246 PEIMS-------------------------------------------------------------------------KY 252 (733)
T ss_pred HHHhc-------------------------------------------------------------------------cc
Confidence 32221 11
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhhH
Q 001309 460 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 539 (1103)
Q Consensus 460 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~k 539 (1103)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 110 01
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCC
Q 001309 540 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 609 (1103)
Q Consensus 540 ~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~ 609 (1103)
-.+..+|+.+.. ..|.||||||+|.+.... .++.+.|...++.+. +.|+|||++|+++.
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~-------- 326 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA-------- 326 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh--------
Confidence 123456665554 789999999999955421 234445556666653 58999999995333
Q ss_pred CceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccc
Q 001309 610 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 687 (1103)
Q Consensus 610 ~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~ 687 (1103)
++ ++++| ||++++++++|+.+.|..
T Consensus 327 ----------------------ld-------------------------------~al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 327 ----------------------LD-------------------------------PALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred ----------------------cC-------------------------------HHHhCchhccEEEEeCCcCHHHHHH
Confidence 22 27777 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCC-Cccccc---cCchhhhHHHHHhh
Q 001309 688 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 762 (1103)
Q Consensus 688 Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl~id---~~sI~v~~~df~~a 762 (1103)
|+++|+. ...+ ++.+++.++..|.||+++++..+|..|+..++.+..+....+ ....+. .....+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999864 2233 577899999999999999999999999999988764311000 000111 12345666777777
Q ss_pred hhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEE
Q 001309 763 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 842 (1103)
Q Consensus 763 ~~eik~~~~sik~~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~ 842 (1103)
+..+.+... ...+ ...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++++|||
T Consensus 432 l~~v~ps~~----------------~~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI----------------REVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc----------------chhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 655544210 0000 0112568999999999999999999999999999998884 466899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHH
Q 001309 843 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 922 (1103)
Q Consensus 843 GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~ 922 (1103)
||||||||++|+++|++++++|+.++++++.++|+|+.++.++.+|..|+...|+||||||||.|++.+..........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988865545556788
Q ss_pred HHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHH
Q 001309 923 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1000 (1103)
Q Consensus 923 vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~ 1000 (1103)
++++|+..++++... .+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.+..+..+..++++..||.
T Consensus 574 ~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 999999999997643 679999999999999999998 9999999999999999999999999888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchh
Q 001309 1001 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 1080 (1103)
Q Consensus 1001 ~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~ 1080 (1103)
.|+||+|+||.++|++|+..++++.+.......... ..........++++||..|+++++||++.+ .+..
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~ 721 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV--------GEEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLR 721 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc--------ccccccccCcccHHHHHHHHHHcCCCCCHH--HHHH
Confidence 999999999999999999999998654322111000 000011235799999999999999999776 4677
Q ss_pred hhHHHHhhc
Q 001309 1081 LLQWNELYG 1089 (1103)
Q Consensus 1081 ~v~W~digG 1089 (1103)
+.+|...+|
T Consensus 722 ~~~~~~~~~ 730 (733)
T TIGR01243 722 YERLAKELK 730 (733)
T ss_pred HHHHHHHhc
Confidence 899988776
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-49 Score=460.97 Aligned_cols=434 Identities=27% Similarity=0.450 Sum_probs=331.6
Q ss_pred CCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEeeccCCCCccccCCCCCceeeccCcchhhhh
Q 001309 555 SSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 624 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~-----~~~~~~~l~~~L~----~l~-g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~ 624 (1103)
.+|+||||++.|-+... .-++...|+-.|. +.+ ++++|||+++..++
T Consensus 489 ~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~----------------------- 545 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED----------------------- 545 (953)
T ss_pred cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc-----------------------
Confidence 78899999998884331 1334444444444 223 48999999996544
Q ss_pred cccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccchhHHHHHhhhCCC-Ccc
Q 001309 625 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCV 703 (1103)
Q Consensus 625 d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~ 703 (1103)
.|- .+-.+|...|.++.| ++.-|.+||++-+ ....+ .++
T Consensus 546 ---lp~-----------------~i~~~f~~ei~~~~l------------------se~qRl~iLq~y~--~~~~~n~~v 585 (953)
T KOG0736|consen 546 ---LPA-----------------DIQSLFLHEIEVPAL------------------SEEQRLEILQWYL--NHLPLNQDV 585 (953)
T ss_pred ---CCH-----------------HHHHhhhhhccCCCC------------------CHHHHHHHHHHHH--hccccchHH
Confidence 221 233344444444444 4444555555432 22234 567
Q ss_pred chhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCC----C-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcc
Q 001309 704 DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 778 (1103)
Q Consensus 704 ~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~----~-~~kl~id~~sI~v~~~df~~a~~eik~~~~sik~~v~ 778 (1103)
.+..++.+|.||+-.+++.++..+...+..+-....+ . ...-.+-+....+...||-.+...++
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~----------- 654 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ----------- 654 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH-----------
Confidence 8888999999999999999998875554443221111 0 01111223334455566655543332
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001309 779 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 779 ~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
.++...+.+..+| +++|+||+|++++|.+|.+.+.+|+++|++|..+ .++..|||||||||||||.+|+|+|.
T Consensus 655 -~~fs~aiGAPKIP----nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 655 -KEFSDAIGAPKIP----NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred -HhhhhhcCCCCCC----ccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHh
Confidence 2344444444444 7899999999999999999999999999999876 45567999999999999999999999
Q ss_pred HhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchh-HHHHHHHHhHHhhhcCCccc
Q 001309 859 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 859 elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~-~~l~~vl~~LL~~ldgl~~k 937 (1103)
++..+|+.|.+++|.++|+|++|++++.+|+.|+..+|||||+||+|+|.+.|+..++. ..+.++..+++.++||+...
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999876544 48999999999999999976
Q ss_pred CCccEEEEEecCCCCCCcHHHHh--ccccccccCCCC-HHHHHHHHHHHHhhcccCCcccHHHHHHHcC-CCcHHHHHHH
Q 001309 938 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANMAD-GYSGSDLKNL 1013 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd-~eeR~eIL~~ll~~~~l~~dvdl~~LA~~Te-GySg~DL~~L 1013 (1103)
....|+||++||+|+.|||+++| ||++.+++.+++ .+.+..+++.+.++..+++++++.+||+.++ .|+|+|+..|
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHH
Confidence 67899999999999999999999 999999999886 6668999999999999999999999999997 8999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccc
Q 001309 1014 CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 1078 (1103)
Q Consensus 1014 ~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~ 1078 (1103)
|..|+..|++|.+...+... .+..........|+|+||.+|.++++||++..-...
T Consensus 888 CSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ 943 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLR 943 (953)
T ss_pred HHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999766544211 001112234467999999999999999998764433
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-45 Score=403.72 Aligned_cols=284 Identities=42% Similarity=0.717 Sum_probs=257.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..+.+.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|.++||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34578999999999999999999999999999997 5589999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCC--ccEEEEEecCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK--ERVLVLAATNRP 951 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~--~~VlVIaTTN~p 951 (1103)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|++..++++.+++.++|+++|||+..... ..|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999876531 348999999999
Q ss_pred CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 952 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 952 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
++||++++|||.++|+|++|+.+.|..+|+..+....+.++++++.|+..++||||+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcC
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1090 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~ 1090 (1103)
......+ ..+-..+++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~la---------kE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLA---------KEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhh---------hhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 2211111 111226899999999999999999754 57788999999996
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=422.66 Aligned_cols=407 Identities=35% Similarity=0.527 Sum_probs=333.9
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhccCh--------hhHHHHHHHHhcCC-CCEEEEeeccCCCCccccCCCCCceee
Q 001309 544 ELFEVALNESKSSPLIVFVKDIEKSLTGNN--------DAYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGLLFT 614 (1103)
Q Consensus 544 ~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~--------~~~~~l~~~L~~l~-g~vvvIgs~~~~d~~k~k~~~~~~~~~ 614 (1103)
.+|+-+.. ..|.|+|+++++.+..... ...+.+...++.+. +.|++++++++.+.
T Consensus 67 ~~~~~a~~---~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~------------- 130 (494)
T COG0464 67 ELFEEAEK---LAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG------------- 130 (494)
T ss_pred HHHHHHHH---hCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccc-------------
Confidence 44444444 7778999999998655322 23444444444443 46899998884333
Q ss_pred ccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchhHHH
Q 001309 615 KFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIR 692 (1103)
Q Consensus 615 ~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~Ih 692 (1103)
++. ++++ ||++++++.+|+..+|..|+.+|
T Consensus 131 -----------------~~~-------------------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 162 (494)
T COG0464 131 -----------------LDP-------------------------------AKRRPGRFDREIEVNLPDEAGRLEILQIH 162 (494)
T ss_pred -----------------cCh-------------------------------hHhCccccceeeecCCCCHHHHHHHHHHH
Confidence 332 7777 99999999999999999999999
Q ss_pred HHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhh
Q 001309 693 SVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKS 772 (1103)
Q Consensus 693 T~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~~~s 772 (1103)
+.+...+. ..++..++..+.||.++++..+|+.+..++.++.. ......+.+...+|..++..+.+.
T Consensus 163 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~--- 229 (494)
T COG0464 163 TRLMFLGP-PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS--- 229 (494)
T ss_pred HhcCCCcc-cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc---
Confidence 98443332 78999999999999999999999999999988754 223344455566665544333221
Q ss_pred hhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHH
Q 001309 773 LKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTML 852 (1103)
Q Consensus 773 ik~~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~L 852 (1103)
..+....+.++|++++|++..++.+.+.+..|+.+++.|.+.+ .+++.++||+||||||||+|
T Consensus 230 ----------------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~l 292 (494)
T COG0464 230 ----------------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLL 292 (494)
T ss_pred ----------------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHH
Confidence 0111223468999999999999999999999999999998755 45668999999999999999
Q ss_pred HHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc
Q 001309 853 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 932 (1103)
Q Consensus 853 AkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld 932 (1103)
|+++|++++.+|+.+..+++.++|+|++++.++.+|..|++.+|+||||||+|.|++.+.... .....+++++++..++
T Consensus 293 Akava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d 371 (494)
T COG0464 293 AKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELD 371 (494)
T ss_pred HHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999998886533 2233689999999999
Q ss_pred CCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcc--cCCcccHHHHHHHcCCCcHH
Q 001309 933 GLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGS 1008 (1103)
Q Consensus 933 gl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~--l~~dvdl~~LA~~TeGySg~ 1008 (1103)
++... .+|+||+|||+++.+|++++| ||+..+++++|+.++|.+||+.++.... +..++++..+++.|+||+|+
T Consensus 372 ~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sga 449 (494)
T COG0464 372 GIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGA 449 (494)
T ss_pred CCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHH
Confidence 98765 569999999999999999999 9999999999999999999999999644 35789999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 001309 1009 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1072 (1103)
Q Consensus 1009 DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s 1072 (1103)
||..+|++|++.+.++.. ...++++||..|++++.|++.
T Consensus 450 di~~i~~ea~~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 450 DIAALVREAALEALREAR-------------------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------cCCccHHHHHHHHHhcCCCCC
Confidence 999999999999888742 357999999999999999865
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-44 Score=391.68 Aligned_cols=247 Identities=41% Similarity=0.697 Sum_probs=229.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34789999999999999999999999999999999996 56799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
+|+|++...++.+|.+|+.++||||||||||.+.++|.+. +......+.+-+|+.+|||+.+. .+|-||+|||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 34445567777899999999764 7899999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.|||+++| ||++.|+|++|+.+.|.+||+.+.+++.+..++|++.||..|+|+||+||+++|.+|.+.|+|+-
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccC
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1070 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS 1070 (1103)
...++|+||.+|++++...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhc
Confidence 2469999999999998653
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-44 Score=408.57 Aligned_cols=297 Identities=33% Similarity=0.578 Sum_probs=262.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
+++|.+|+|+++...+|.+++.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.++++++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999988 999999999995 6779999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccC--CccEEEEEecCCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 954 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~--~~~VlVIaTTN~p~~L 954 (1103)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. ...+.-+++..+|+..||++.... ..+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999998876 667788899999999999987653 4789999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 001309 955 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 1031 (1103)
Q Consensus 955 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~- 1031 (1103)
|++++| ||++.|.+..|+..+|.+||+.+++...+..++++..||..|.||.|+||..||.+|+..+++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999874431
Q ss_pred -HH-----------------HHHH-----------------hhccCCCCCCCccccccccHHHHHHHHHHhccCcccccc
Q 001309 1032 -ER-----------------ALAL-----------------AENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 1076 (1103)
Q Consensus 1032 -~~-----------------~l~~-----------------~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~ 1076 (1103)
.. .+.. ..+...+........-.|+++||..|+..++||...++.
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 00 0000 000111111111234468999999999999999999999
Q ss_pred cchhhhHHHHhhcCCCcccc
Q 001309 1077 NMNELLQWNELYGEGGSRKR 1096 (1103)
Q Consensus 1077 ~~~~~v~W~digG~~~~Rk~ 1096 (1103)
...|.+.|+||||++.+|..
T Consensus 503 ~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred eecCCCChhhcccHHHHHHH
Confidence 99999999999999998853
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-39 Score=375.67 Aligned_cols=298 Identities=31% Similarity=0.533 Sum_probs=253.9
Q ss_pred ccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhH
Q 001309 702 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 781 (1103)
Q Consensus 702 ~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~~~sik~~v~~~e 781 (1103)
..+|+.++.+|.||..-|+.-++.-|...|+. +.+.+..| ..+..+|+.++....|..
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k--------lltke~f~ksL~~F~P~a----------- 652 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK--------LLTKELFEKSLKDFVPLA----------- 652 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc--------cchHHHHHHHHHhcChHH-----------
Confidence 35677799999999999999999999988883 22222222 334556665544433321
Q ss_pred HHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 782 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 782 ~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+.++-.....+..|+||+|+.++++.|++.+++|-++|.+|....+. -+.|||||||||||||+||.++|..++
T Consensus 653 -----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 653 -----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred -----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCC
Confidence 11111111224789999999999999999999999999999988754 447999999999999999999999999
Q ss_pred CcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc
Q 001309 862 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 941 (1103)
Q Consensus 862 ~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~ 941 (1103)
..|+.+.++++.++|+|.+|+.++.+|..|+..+|||||+||+|++.++|+. .......++.++++++|||...- ..
T Consensus 727 ~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-DsTGVTDRVVNQlLTelDG~Egl--~G 803 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-DSTGVTDRVVNQLLTELDGAEGL--DG 803 (952)
T ss_pred eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC-CCCCchHHHHHHHHHhhcccccc--ce
Confidence 9999999999999999999999999999999999999999999999999865 33446788999999999997653 67
Q ss_pred EEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 942 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 942 VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
|.|+|+|.+|+.+||+++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+||+|+||..|+-.|..
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988888899999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 001309 1020 CPIREILEKEK 1030 (1103)
Q Consensus 1020 ~aireiie~~~ 1030 (1103)
.++++++....
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99999876543
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-41 Score=359.93 Aligned_cols=299 Identities=36% Similarity=0.634 Sum_probs=256.3
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 788 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 788 ~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
++-|-...+++.|+|+.|++..|+.|++.|.+|+..|++|... .+|.++|||||||||||++||+|+|.+.+..|+.+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3344456678999999999999999999999999999999754 67899999999999999999999999999999999
Q ss_pred ecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEe
Q 001309 868 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 868 ~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaT 947 (1103)
+.++|+++|.|++|+.++++|++|+.++|+||||||||.|++.|. .++.+..+++..+|+++|.|+... ...|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGND-NDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhccccC-CCceEEEec
Confidence 999999999999999999999999999999999999999988775 467788999999999999998764 588999999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHH
Q 001309 948 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1026 (1103)
Q Consensus 948 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~-l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireii 1026 (1103)
||-|+.||.+++|||.++|++++|+...|..+|+.++.... ...+.|+.+|+.+|+||||+||..+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999998754 34788999999999999999999999999999999987
Q ss_pred HHHHHHHHHH--Hhhc---cCCCCCCC---------------ccccccccHHHHHHHHHHhccCcccccccchhhhHHHH
Q 001309 1027 EKEKKERALA--LAEN---RASPPLYS---------------SVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1086 (1103)
Q Consensus 1027 e~~~~~~~l~--~~~~---~~~~~~~~---------------~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~d 1086 (1103)
...+..+.-. .... ...|-.++ ..--.+|+|.||..++...+|++..+ -.....+|.+
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHH
Confidence 7665433111 0000 00010000 11124899999999999999998765 4566788999
Q ss_pred hhcCCC
Q 001309 1087 LYGEGG 1092 (1103)
Q Consensus 1087 igG~~~ 1092 (1103)
-+|.+|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 888765
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-40 Score=374.04 Aligned_cols=373 Identities=23% Similarity=0.283 Sum_probs=272.3
Q ss_pred CeEEEEcChhhhhc-------cC----hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCCCceeeccCcchhhh
Q 001309 557 PLIVFVKDIEKSLT-------GN----NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 623 (1103)
Q Consensus 557 p~Ilf~~d~e~~l~-------~~----~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l 623 (1103)
=-||-||++|. +| ++ ....+.|.+|++... .|++|||-|||.|=
T Consensus 325 LHIIIFDEiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl---------------------- 381 (744)
T KOG0741|consen 325 LHIIIFDEIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL---------------------- 381 (744)
T ss_pred ceEEEehhhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh----------------------
Confidence 34889999999 66 33 445555555555442 39999999996332
Q ss_pred hcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchhHHHHH-hhhCCC
Q 001309 624 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL 700 (1103)
Q Consensus 624 ~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l 700 (1103)
+ |||||| |||+|+|++|||++||.+|++|||+ |++++.
T Consensus 382 --------I-------------------------------DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~ 422 (744)
T KOG0741|consen 382 --------I-------------------------------DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNK 422 (744)
T ss_pred --------H-------------------------------HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCC
Confidence 2 469999 9999999999999999999999998 999987
Q ss_pred --CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcc
Q 001309 701 --DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 778 (1103)
Q Consensus 701 --~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~~~sik~~v~ 778 (1103)
.++||++||.+||||+||||+++|++|.|+|+.|+.....+........+++++...||-.++.+++|+++ ..
T Consensus 423 l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~s 497 (744)
T KOG0741|consen 423 LSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----IS 497 (744)
T ss_pred CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC-----CC
Confidence 88999999999999999999999999999999998765433333456678999999999999999999998 66
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001309 779 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 779 ~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
+++++.....+++.++.+ + ..+.+.-..++.+ .+.+ -..+...+||+||||+|||+||..+|.
T Consensus 498 ee~l~~~~~~Gmi~~g~~---v------~~il~~G~llv~q-vk~s-------~~s~lvSvLl~Gp~~sGKTaLAA~iA~ 560 (744)
T KOG0741|consen 498 EEDLERFVMNGMINWGPP---V------TRILDDGKLLVQQ-VKNS-------ERSPLVSVLLEGPPGSGKTALAAKIAL 560 (744)
T ss_pred HHHHHHHHhCCceeeccc---H------HHHHhhHHHHHHH-hhcc-------ccCcceEEEEecCCCCChHHHHHHHHh
Confidence 778888888888887643 1 2222222223322 1222 144567899999999999999999999
Q ss_pred HhCCcEEEEecCc-cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 859 EAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 859 elg~~fi~v~~s~-L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
..++||+.+-.++ +.+..-...-.+++.+|+.|++.+-+||++|+|++|+.- -+....+.+.+++.|++.+...+++
T Consensus 561 ~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--vpIGPRfSN~vlQaL~VllK~~ppk 638 (744)
T KOG0741|consen 561 SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--VPIGPRFSNLVLQALLVLLKKQPPK 638 (744)
T ss_pred hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--cccCchhhHHHHHHHHHHhccCCCC
Confidence 9999999987765 322211122347899999999999999999999999743 2445667788999999999988776
Q ss_pred CCccEEEEEecCCCCCCcH-HHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCC----CcHHHHHH
Q 001309 938 DKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKN 1012 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeG----ySg~DL~~ 1012 (1103)
. .+++|++||++.+.|.+ .+...|+..+.++..+ .-.++.+.+... ....+.+...++....+ .-...|..
T Consensus 639 g-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~--~~~~~~~vl~~~-n~fsd~~~~~~~~~~~~~~~~vgIKklL~ 714 (744)
T KOG0741|consen 639 G-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT--TGEQLLEVLEEL-NIFSDDEVRAIAEQLLSKKVNVGIKKLLM 714 (744)
T ss_pred C-ceEEEEecccHHHHHHHcCHHHhhhheeecCccC--chHHHHHHHHHc-cCCCcchhHHHHHHHhccccchhHHHHHH
Confidence 4 68899999988766554 4556888666655433 333333333222 22233344444433322 22355666
Q ss_pred HHHHHHh
Q 001309 1013 LCVTAAH 1019 (1103)
Q Consensus 1013 L~~~Aa~ 1019 (1103)
++++|..
T Consensus 715 lie~a~q 721 (744)
T KOG0741|consen 715 LIEMARQ 721 (744)
T ss_pred HHHHHhc
Confidence 6666643
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.7e-36 Score=352.34 Aligned_cols=398 Identities=22% Similarity=0.373 Sum_probs=292.7
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHH---HhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhhcccCCCC
Q 001309 555 SSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 631 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~~~~~~~~l~~~---L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~ 631 (1103)
.+|.|+.++|.+.++ .+..+...|+.. +...+..+|+++.... .|..
T Consensus 80 ~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~-----------------------------~p~e 129 (489)
T CHL00195 80 ETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN-----------------------------IPKE 129 (489)
T ss_pred CCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC-----------------------------CCHH
Confidence 458999999999977 444444444332 2223445555554331 4444
Q ss_pred ccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccchhHHHHHhhhCCCCccchhhhhhc
Q 001309 632 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIK 711 (1103)
Q Consensus 632 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~ 711 (1103)
+.+ . --.+++++|+.+.+..-.+.... -....++...++.|+..
T Consensus 130 l~~-----------------~-~~~~~~~lP~~~ei~~~l~~~~~------------------~~~~~~~~~~~~~l~~~ 173 (489)
T CHL00195 130 LKD-----------------L-ITVLEFPLPTESEIKKELTRLIK------------------SLNIKIDSELLENLTRA 173 (489)
T ss_pred HHh-----------------c-eeEEeecCcCHHHHHHHHHHHHH------------------hcCCCCCHHHHHHHHHH
Confidence 432 1 23567777777766553322110 00113567788999999
Q ss_pred cCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCC
Q 001309 712 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVI 791 (1103)
Q Consensus 712 tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~~~sik~~v~~~e~~k~ll~~ii 791 (1103)
+.|++-.+++.++..+... .+. ++.+.+...... .+. ++.. ..++
T Consensus 174 ~~gls~~~~~~~~~~~~~~-----------~~~--~~~~~~~~i~~~-------k~q-------~~~~--------~~~l 218 (489)
T CHL00195 174 CQGLSLERIRRVLSKIIAT-----------YKT--IDENSIPLILEE-------KKQ-------IISQ--------TEIL 218 (489)
T ss_pred hCCCCHHHHHHHHHHHHHH-----------cCC--CChhhHHHHHHH-------HHH-------HHhh--------hccc
Confidence 9999999999988764321 111 222222221110 000 0100 1122
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 792 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 792 p~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
.......+|++|+|++.+|+.+.+..... +......++ .+++|+||+||||||||++|+++|++++.+++.++++.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 22223568999999999999998755321 222334453 56699999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC
Q 001309 872 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p 951 (1103)
+.+.++|+.+..++.+|..|+..+|+||||||||.++..+...+......+++.+|+..++.. ..+++||+|||++
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~ 370 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNI 370 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCCh
Confidence 999999999999999999999999999999999999876554445566778888888877642 3679999999999
Q ss_pred CCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhccc--CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 001309 952 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1027 (1103)
Q Consensus 952 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l--~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie 1027 (1103)
+.||++++| ||++.+++++|+.++|.+||+.++.+... ..+.+++.||..|+||||+||.++|.+|+..+..+
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--- 447 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--- 447 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc---
Confidence 999999998 99999999999999999999999988643 25788999999999999999999999998766542
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhh
Q 001309 1028 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1088 (1103)
Q Consensus 1028 ~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~dig 1088 (1103)
.++++.+||..|++++.|++.........+++|-.-+
T Consensus 448 ------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 2568999999999999999877777788899997654
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=342.52 Aligned_cols=250 Identities=36% Similarity=0.586 Sum_probs=227.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
...+++|+|+-|.++.|++|++.|.. ++.|+.|.+.| .+-|+||||+||||||||+||+|+|.+.++||+....+++.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 33478999999999999999999885 99999999987 45669999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
..++|.+.+.++.+|..|+..+||||||||||.+.++|..... ...+..+++++..|||+..+ ..|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~-~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ-HYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH-HHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 9999999999999999999999999999999999888865444 48899999999999999765 67999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
||+++.| ||+++|.++.||..-|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|...
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------- 524 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------- 524 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999876553
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
....++|.|++-|.+++-.-....
T Consensus 525 -------------------ga~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 525 -------------------GAEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred -------------------CcccccHHHHhhhhhheeeccccc
Confidence 124589999999998876554333
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=337.04 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=253.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.+.++.|+.++++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3578999999999999999999999999999974 46788999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 955 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 955 (1103)
|.|+.++.++.+|..|+..+|+||||||||+++.+| .+..++..+++..+|+..+++.......+|+||+|||.|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999 6678888899999999999999988888999999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 956 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 956 ~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~-~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
++++|||..++++++|+.+.|..+|+.++.+. ....+.+++.|++.|+||+++||..+|..|++.+++++......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999987 334678999999999999999999999999999998764321111
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCC
Q 001309 1035 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1092 (1103)
Q Consensus 1035 l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~ 1092 (1103)
.......|+++..||..|++.+.++++.. ....+..|+..+|...
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 02234678999999999999999999887 5567889999999754
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=304.75 Aligned_cols=245 Identities=31% Similarity=0.576 Sum_probs=224.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+..+++||+|+++++++|.+++.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+-.+.+..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34568999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.|+|.+.+.++..|..|+..+|+||||||+|.+..+|... .......+.+-+++.+++|+.+. .+|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 9999999999999999999999999999999998877653 22334456667889999999875 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.|||+++| |+++.|+|+.|+.+.|.+|++.+.+++.+.+++++++||+.|++|+|++++.+|.+|.+.+.|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
...++-+||.+++.+++
T Consensus 397 ---------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH
Confidence 23588899999998876
No 17
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=299.99 Aligned_cols=247 Identities=37% Similarity=0.621 Sum_probs=226.6
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001309 793 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 872 (1103)
Q Consensus 793 ~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L 872 (1103)
..++.+++.||+|++-+|+++++.+.+|+.+.++|.+-|+ .||+|+|+|||||||||+||+|+|++..+.|+.+..+++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 3456889999999999999999999999999999999996 466999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
..+|.|++...++.+|..|+...|+||||||||.+..+|... +......+++-+++++|+|+... .+|-||++||+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnr 303 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNR 303 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCc
Confidence 999999999999999999999999999999999998887652 34456678889999999999765 67999999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 001309 951 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1028 (1103)
Q Consensus 951 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~ 1028 (1103)
.+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+..+-+..|++||..+|++|.+.++|+.
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--- 380 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN--- 380 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc---
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001309 1029 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1029 ~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
.-.+...||++|.+.+.
T Consensus 381 -----------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 -----------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred -----------------------ceeeeHHHHHHHHHhhc
Confidence 12477889999987653
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=295.34 Aligned_cols=244 Identities=35% Similarity=0.612 Sum_probs=223.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
+.+++-++|++.+++++++.+.+|..+|++|...|+..| +|+|||||||||||.||+++|++..+.|+.++.+++..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 457888999999999999999999999999999998766 8999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
+|++...++.+|.+|+.++|+|||.||||++...|.. .+......+.+-++++++||+... .++-||.+||+.+-|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999876632 334445566777899999999765 679999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 955 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 955 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
|++++| |+++.|+|++|+.+.|.+|++.+-.++++...+++..+|....|.+|++++.+|.+|.+.|.|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1033 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1033 ~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
...+|.+||+.|..++..
T Consensus 373 -------------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHh
Confidence 135899999999988754
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-34 Score=305.12 Aligned_cols=244 Identities=39% Similarity=0.647 Sum_probs=223.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|.||+|++.+.++|++.+.+|+.+|+.|...|+ +||+||+|||+||||||.||+|+|+...+.|+.+-.++|..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 458999999999999999999999999999999995 6779999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
.|++.+.++++|..|..++|+|+||||||.+..+|.+ .+......+.+-+|+++++|+... ..|-||.+||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccccc
Confidence 9999999999999999999999999999999887754 333444455566899999999764 789999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 955 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 955 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
||+++| |+++.|.|+.||...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|...|.|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1033 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1033 ~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
...++++||.+|.+.|--
T Consensus 411 -------------------Rm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 411 -------------------RMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred -------------------HhhccHHHHHHHHHHHHH
Confidence 135899999999998753
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-33 Score=333.16 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
.+.+++|.|+.|.+++|++|+|.|.. |++|+.|.+.| .+.|+|+||+||||||||.||+|+|.+.++||+.++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999985 99999999999 56679999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCC---CCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~---~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
..+.|.....++.+|..|+...|+||||||||.+...|. ..+.+......+++++..|||+... ..|+|+++||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999998899999999999999999999999999988874 3345566677899999999999765 67999999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 001309 951 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1027 (1103)
Q Consensus 951 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie 1027 (1103)
++.||++++| ||++.+.+++|+...|..|++.+++..++. +++++..+|.+|.|++|+||.++|++|+..++|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 7888999999999999999999999999999886
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001309 1028 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1071 (1103)
Q Consensus 1028 ~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~ 1071 (1103)
....|+..||.+|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235688999999999776664
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=318.21 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=221.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+.++|+||+|++.++++|++.+.+|+.+|+.|.+.++ .+++++||+||||||||++|+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 44789999999999999999999999999999999885 46689999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.|.|+.+..++.+|..|+...|+||||||||.++..+... +......+++.+++..++++... .++.||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 22334567788888888887543 5699999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.+|++++| ||++.|++++|+.++|.+||+.++.+..+..++++..++..|+||+|+||.++|++|++.++++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999988751
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
...++++||.+|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 136999999999998753
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=294.08 Aligned_cols=242 Identities=31% Similarity=0.481 Sum_probs=211.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|+|++|+++.|...+-.+. .+..|+.|.++. |++||+|||||||||++|+|+|++.+.|++.+.+.+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5689999999999988765444 588999998764 58999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
+|.+...++++|+.|++.+|||+||||+|.+.-.|.-..-......+.|.|++.+||+.. +..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCH
Confidence 999999999999999999999999999999865543322233455788999999999974 478999999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHH-HHHHHHhhhhHHHHHHHHHHHHH
Q 001309 957 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKN-LCVTAAHCPIREILEKEKKERAL 1035 (1103)
Q Consensus 957 aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~-L~~~Aa~~aireiie~~~~~~~l 1035 (1103)
++++||...|+|.+|+.++|.+|++.++++.++.-+.++..++..|.|+||+||+. ++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 99999999999999999999999999999999988899999999999999999984 6677777777652
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001309 1036 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1071 (1103)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~ 1071 (1103)
...++.+||+.|+++-++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 12477899999999865543
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-33 Score=326.82 Aligned_cols=262 Identities=38% Similarity=0.607 Sum_probs=245.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+ ++++|.......+++.+..|+.++..|...+ .++++++|+|||||+|||++++++|++.++.++.++++++.+++.
T Consensus 182 ~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 182 VG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFP 259 (693)
T ss_pred cc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcc
Confidence 45 6899999999999999999999999999888 467799999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 878 GEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
|+.++.++.+|+.|.+++ |+||||||+|.+++++..... ...++..+++..++++... .+++||++||+|+.||+
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~--~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPD--AKVIVLAATNRPDSLDP 335 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCc--CcEEEEEecCCccccCh
Confidence 999999999999999999 999999999999998876444 6788999999999998743 78999999999999999
Q ss_pred HHHh-ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001309 957 AVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL 1035 (1103)
Q Consensus 957 aLlr-RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l 1035 (1103)
+++| ||++.+.+..|+..+|.+|++.+.+.++..++.++..+|..|.||+|+||..+|..|+..++|+
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----------- 404 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR----------- 404 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----------
Confidence 9998 9999999999999999999999999999888899999999999999999999999999988775
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCcccc
Q 001309 1036 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1096 (1103)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~Rk~ 1096 (1103)
++++|..|+..++||...+.....++++|+||||++.+|++
T Consensus 405 --------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 --------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred --------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67899999999999999999999999999999999999864
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=1.4e-31 Score=310.84 Aligned_cols=250 Identities=41% Similarity=0.699 Sum_probs=221.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+..+|++|+|++++++.+.+.+..|+.+++.|...++ .+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4678999999999999999999999999999998885 455899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
|.|+.+..++.+|..|+...|+||||||||.++..+.... ......+.+.+++..++++... .+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 1223455666777778876543 57999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
+|++++| ||+..+.|++|+.++|.+||+.++....+..+.++..+|..|+||+|+||..+|++|++.++++
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------- 355 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------- 355 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999998 9999999999999999999999999888888899999999999999999999999999988775
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
....++++||.+|+++++++...+
T Consensus 356 -------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 -------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 123589999999999999876555
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-32 Score=286.99 Aligned_cols=248 Identities=33% Similarity=0.579 Sum_probs=225.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+.+++.|++|..++++.|++.+..|+.+|+.|...|+. ||+|+|+|||||||||.+|+|+|+..++.|+.+-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457899999999999999999999999999999999964 6699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
+|+|++...++.+|++|+..+.||||+||||.+.+.|... +......+.+-+++.+++|+.+. .++-|+.+||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888654 33444556677889999999754 7899999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.|||+++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.++|.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999888899999999999999999999999999999998852
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1071 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~ 1071 (1103)
.+..|..||.+|+.++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 02467789999999876543
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=9.9e-31 Score=305.48 Aligned_cols=246 Identities=38% Similarity=0.622 Sum_probs=219.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+..+|+||+|+++++++|.+.+..|+.+|+.|...++. +++++||+||||||||++|+++|++++.+|+.+.++++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 35799999999999999999999999999999998854 66899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
|.|+.+..++.+|..|....|+||||||||.++..+.. .+......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 99999999999999999999999999999999876643 222333445667788888887543 57999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
+|++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..++..++||+|+||.++|.+|+..|+++-
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999998 99999999999999999999999999888889999999999999999999999999999988851
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccC
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1070 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS 1070 (1103)
...|+++||..|++++...
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHhh
Confidence 2359999999999998543
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.6e-30 Score=310.90 Aligned_cols=269 Identities=39% Similarity=0.600 Sum_probs=229.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..+.++|+|++|++++++++.+.+.. +.+++.|...+ ..+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 35578999999999999999998875 78888888777 45668999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p 951 (1103)
..+.|..++.++.+|..|+...|+||||||||.++..+... ........++++|+..++++... .+++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 88999999999999999999999999999999998766542 22344567888999999987543 569999999999
Q ss_pred CCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001309 952 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1029 (1103)
Q Consensus 952 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~ 1029 (1103)
+.+|++++| ||++.+.+++|+.++|.+|++.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~----- 278 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK----- 278 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999998877777889999999999999999999999998766553
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCC
Q 001309 1030 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1092 (1103)
Q Consensus 1030 ~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~ 1092 (1103)
....++.+||..|++++..........+.+..+|...+.+.|
T Consensus 279 ---------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ---------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ---------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124689999999999886554444444566666766665433
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=309.76 Aligned_cols=250 Identities=40% Similarity=0.624 Sum_probs=227.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
...++|.|+.|.++.++++.+.|.. ++.|..|...|. +-|+|+||+||||||||.||+|+|.+.+.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4478999999999999999999884 889999998886 66799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.++|-+...++.+|..|++++||||||||||.+...|+. .+.+......++++++.|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877642 34556667899999999999974 47799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.||++++| ||++.+.++.||...|++|++.+.+...+.+++++..+|+.|.|++|+||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
....++|.||.+|++++..-....
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erk 397 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERK 397 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcC
Confidence 235689999999999987654433
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=9.6e-30 Score=317.09 Aligned_cols=287 Identities=37% Similarity=0.628 Sum_probs=246.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
.++|++|+|++.+++.+++.+..|+.+|+.|...++ .+++++||+||||||||+||+++|++++.+++.++++++.+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 579999999999999999999999999999998885 5668999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
.|..+..++.+|..|....|+||||||||.+++.+... ..+...++.++|+..++++.. ...++||++||.++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 99999999999999999999999999999998776543 223345678888888888754 367999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 957 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 957 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
++++ ||+..+.+++|+.++|.+||+.+.....+..+.++..++..++||+++|+..+|..|+..++++.+.......
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~- 408 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF- 408 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc-
Confidence 9998 9999999999999999999999988887778889999999999999999999999999999888654221100
Q ss_pred HHHhhccCCCCC-CCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCccc
Q 001309 1035 LALAENRASPPL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1095 (1103)
Q Consensus 1035 l~~~~~~~~~~~-~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~Rk 1095 (1103)
..... ........++++||..|++.+.|+...+.....+.+.|+|++|++.+|+
T Consensus 409 -------~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 -------EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred -------ccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 00000 0111234689999999999999998888777789999999999988875
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=8.6e-29 Score=285.29 Aligned_cols=243 Identities=44% Similarity=0.731 Sum_probs=213.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+..+|++|+|++++++.|.+.+..|+.+++.|...++ .+++++||+||||||||++|+++|++++.+|+.+.+..+...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 4678999999999999999999999999999998885 456899999999999999999999999999999999998888
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
+.|+....++.+|..|+...|+||||||+|.++..+.... ......+.+.+++..++++... .++.||+|||.++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 9999899999999999999999999999999986654321 1223345566777777776432 57999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
+++++++ ||++.+.++.|+.++|.+|++.++....+..++++..++..++||+|+||.++|.+|++.++++
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~------- 346 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE------- 346 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 9999999999999999999999998887777889999999999999999999999999988775
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1067 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v 1067 (1103)
....|+++||.+|++++
T Consensus 347 -------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 -------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCCccCHHHHHHHHHHh
Confidence 12359999999999875
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2.3e-28 Score=289.23 Aligned_cols=273 Identities=29% Similarity=0.486 Sum_probs=210.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 864 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~----------f 864 (1103)
.+.++|++|+|++..++.+++.+.+|+.+++.|...++ .|++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998885 456899999999999999999999998544 6
Q ss_pred EEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCc
Q 001309 865 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 940 (1103)
Q Consensus 865 i~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~ 940 (1103)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+...........++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 677778889999999999999999998864 6999999999999988765444455577889999999998654 5
Q ss_pred cEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhc-ccC---------CcccHHHHHHH-------
Q 001309 941 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 1001 (1103)
Q Consensus 941 ~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~-~l~---------~dvdl~~LA~~------- 1001 (1103)
+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..++..
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998652 221 01111222111
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 001309 1002 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 1059 (1103)
Q Consensus 1002 ----------------------TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eD 1059 (1103)
++.+||++|.++|.+|...++++.+. ...+.++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 23455566666666665555554321 1124789999
Q ss_pred HHHHHHHhccCcccccccchhhhHHHHhhcCCCc
Q 001309 1060 FKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1093 (1103)
Q Consensus 1060 F~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~ 1093 (1103)
+..|+..-..-. .+..+...-..|..|.|..|-
T Consensus 471 l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 471 LLAAVLDEFRES-EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCC
Confidence 999988643221 222333334679999887653
No 32
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-30 Score=318.14 Aligned_cols=414 Identities=19% Similarity=0.209 Sum_probs=287.7
Q ss_pred ceeeeccccCCCCcceeeccCCCCCCCCCC-----CCCCCCCC---cccccccccccCCCCchhhHHHHHHHHHHHhhcc
Q 001309 482 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 553 (1103)
Q Consensus 482 g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~-----~~~~~~~~---~~~~~~~l~~d~~~~~~~~k~~~~~l~evl~~e~ 553 (1103)
+++...|-.++. =||.|+.|...|..|. +.|..+.. ||.. .-.-+.+.|.......+.-|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr--kgaD~lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR--KGADCLSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhh--cCchhhccccCcHHHHHHHHHHHHhc--
Confidence 344334445554 5899999999998866 66766554 6633 33335678999999999998887766
Q ss_pred CCCCeEEEEcChhhhhc-----cChhhHHHHHHHHhcC------CCCEEEEeeccCCCCccccCCCCCceeeccCcchhh
Q 001309 554 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 622 (1103)
Q Consensus 554 ~~~p~Ilf~~d~e~~l~-----~~~~~~~~l~~~L~~l------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~ 622 (1103)
++|+|+||++|++ |+ .+.++|++++++|.+| +|+|||||||||+|
T Consensus 362 -~qPSIIffdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd---------------------- 417 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD---------------------- 417 (1080)
T ss_pred -cCceEEecccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc----------------------
Confidence 9999999999998 55 5799999999999998 67999999999544
Q ss_pred hhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchhHHHHHhhhCCC
Q 001309 623 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL 700 (1103)
Q Consensus 623 l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l 700 (1103)
.+++ |||| ||+|+|+|+||+.++|..|+.|||+.|.+++
T Consensus 418 --------a~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i 458 (1080)
T KOG0732|consen 418 --------AIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI 458 (1080)
T ss_pred --------ccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC
Confidence 4444 9999 9999999999999999999999999999999
Q ss_pred CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCC-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhh--c
Q 001309 701 DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDV--V 777 (1103)
Q Consensus 701 ~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~sI~v~~~df~~a~~eik~~~~sik~~--v 777 (1103)
.-..++.||..|.||+||||+++|++|+..++++.+|++|. ..++.+++..+++...+|..++..+.+....-..+ .
T Consensus 459 ~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~ 538 (1080)
T KOG0732|consen 459 SRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSR 538 (1080)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999999 78899999999999999999887765432211000 0
Q ss_pred chhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 001309 778 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAV 856 (1103)
Q Consensus 778 ~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~-f~~~~l~~p~~gVLL~GPpGTGKT~LAkAI 856 (1103)
+..+..+.++ +-.........+.-.......+.+...+..+..+. |.-.-+.+| .+||.|..|.|.+++..+|
T Consensus 539 Pl~~~~~~ll----~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aI 612 (1080)
T KOG0732|consen 539 PLSTYLKPLL----PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAI 612 (1080)
T ss_pred CCCcceeccc----chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHH
Confidence 0000000000 00000001111222223333333333221111111 111122333 5999999999999999999
Q ss_pred HHHh-CCcEEEEecCcccccc-ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 857 ATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 857 A~el-g~~fi~v~~s~L~s~~-~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
.+.+ +.++...+.+.+.... +...+..+..+|.+|++..||||||.++|.|...... .+..+|+..++..
T Consensus 613 lh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~ 684 (1080)
T KOG0732|consen 613 LHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEK 684 (1080)
T ss_pred HHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhh
Confidence 9888 7888888888777665 6778889999999999999999999999999643322 2333444333322
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 935 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
... ..|..+-+-+..+.-.+ ..+..+..|..+.+..+++..++.
T Consensus 685 ~~~--t~i~e~~t~~~~~~~~~------~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 685 ALS--TPILELHTWDTSFESVN------KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hhc--cchhhhccccccccccC------ccccccccchhhhhHHHHHHHHHH
Confidence 111 11222222111100000 124566778888888877777765
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=3.3e-28 Score=296.07 Aligned_cols=244 Identities=39% Similarity=0.602 Sum_probs=212.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
+...+|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467999999999999999998765 788888887774 55689999999999999999999999999999999999888
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....+++.++..++++... .+++||++||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchH
Confidence 888888888999999999999999999999999866543 223444567788899999887543 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.+|++++| ||++.+.+++|+.++|.+||+.++....+.++.++..+|..|.||+++||.++|++|+..+.++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------ 406 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------ 406 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999999877788899999999999999999999999998876654
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
....++++||+.|++++.
T Consensus 407 --------------------~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 407 --------------------KKATITMKEIDTAIDRVI 424 (638)
T ss_pred --------------------CCCCcCHHHHHHHHHHHH
Confidence 124588889999888763
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-28 Score=298.41 Aligned_cols=347 Identities=28% Similarity=0.403 Sum_probs=264.5
Q ss_pred hhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCC-CCccccccCchhhhHHHHH
Q 001309 682 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 760 (1103)
Q Consensus 682 ~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~sI~v~~~df~ 760 (1103)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+......+.+..++. ..++..+..+......+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 3456667777765443 455667777778888887777777776666555555544 3333322222222221111
Q ss_pred hhhhhhhhhhhhhhhhcchhHHHHhhhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceE
Q 001309 761 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 839 (1103)
Q Consensus 761 ~a~~eik~~~~sik~~v~~~e~~k~ll~~i-ip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gV 839 (1103)
.+. ....+..+.|++++|++.++..|++.|..|+.+|+.|...++. ||+|+
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 111 1123446799999999999999999999999999999998865 55999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 001309 840 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 914 (1103)
Q Consensus 840 LL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~ 914 (1103)
|++||||||||..|+|+|..+ ...|+.-..++..++|+|+.+..++.+|++|++.+|+|||+||||-|.+.|.+.
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk 382 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK 382 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch
Confidence 999999999999999999887 466777788899999999999999999999999999999999999998887553
Q ss_pred chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcc-cCC
Q 001309 915 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 991 (1103)
Q Consensus 915 ~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~-l~~ 991 (1103)
.......+..+++.+|+|+... ..|+||+|||+++.++++++| ||++.+++++|+.+.|.+|+..+-.+.. ...
T Consensus 383 -qEqih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 383 -QEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred -HHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 3345567889999999999865 779999999999999999999 9999999999999999999999877643 224
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001309 992 DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1071 (1103)
Q Consensus 992 dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~ 1071 (1103)
..-+..||..|.||.|+||+.||..|+..++++-.-.. +..... ..-......+...||..|+.+..|+.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~-------y~s~~k---l~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI-------YSSSDK---LLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee-------eccccc---ccccchhhhhhhHhhhhhhhccCCCC
Confidence 55678999999999999999999999999988631110 000000 00111223488889999998888876
Q ss_pred ccc
Q 001309 1072 SSE 1074 (1103)
Q Consensus 1072 s~e 1074 (1103)
...
T Consensus 530 ~R~ 532 (1080)
T KOG0732|consen 530 RRS 532 (1080)
T ss_pred Ccc
Confidence 543
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=2.6e-27 Score=290.55 Aligned_cols=250 Identities=38% Similarity=0.602 Sum_probs=216.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
.....+|+++.|.+..++.+.+.+.. +..++.|...+. ..++++||+||||||||++|++++.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 33456899999999999999998876 556666665543 4457899999999999999999999999999999999998
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p 951 (1103)
..+.+.....++.+|..|+..+|+||||||||.+...+.. .+.+.....++++++..++++... ..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCCh
Confidence 8889999999999999999999999999999999877653 233445567889999999998653 679999999999
Q ss_pred CCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001309 952 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1029 (1103)
Q Consensus 952 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~ 1029 (1103)
+.||++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|..|.||+|+||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888999999999999999999999999999887764
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 001309 1030 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1073 (1103)
Q Consensus 1030 ~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~ 1073 (1103)
....++++||++|++++.+....
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12458889999998887665443
No 36
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-28 Score=262.90 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=215.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|++++|.-.+..++++.+..|+..|++|.+.++ +||.+++||||||+|||.+|+++|..++++|+.+.++.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 569999999999999999999999999999999885 5679999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
.|++...+++.|..|+.+.|||||+||||...+.+.+.+ ......+.+-+++.+|+++... .+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCcccc
Confidence 999999999999999999999999999999988875432 2333445555677788887544 679999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 955 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 955 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
+++++| |+++.+.+++|+...|..|++.+.+.....-+++.+.+.+..+|+.|.|+++.|++|.+.++++.-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~------ 358 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER------ 358 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh------
Confidence 999999 999999999999999999999988888778889999999999999999999999999988887521
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001309 1033 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1033 ~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
-.+.+|||..++.++.
T Consensus 359 --------------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 --------------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred --------------------HHHhHHHHHHHHHHHH
Confidence 1256788888877654
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=3e-26 Score=291.04 Aligned_cols=185 Identities=20% Similarity=0.302 Sum_probs=153.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc----------cc------------------------
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW----------FG------------------------ 878 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~----------~G------------------------ 878 (1103)
..|++||||+||||||||+||+|+|.++++||+.++++++...+ .|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36789999999999999999999999999999999999887543 11
Q ss_pred -------ccHH--HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc-cCCccEEEEEec
Q 001309 879 -------EGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAAT 948 (1103)
Q Consensus 879 -------~~e~--~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~-k~~~~VlVIaTT 948 (1103)
..+. .++.+|+.|++.+||||||||||.+..... ....+++++..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 1222 378899999999999999999999964421 11236778888887642 234679999999
Q ss_pred CCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHh--hcccCC-cccHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 001309 949 NRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 949 N~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~--~~~l~~-dvdl~~LA~~TeGySg~DL~~L~~~Aa~~air 1023 (1103)
|+|+.||||++| ||++.|.++.|+..+|.+++..++. ...+.. .++++.+|..|.||+|+||.+||++|+..+++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999887643 333433 35799999999999999999999999999988
Q ss_pred H
Q 001309 1024 E 1024 (1103)
Q Consensus 1024 e 1024 (1103)
+
T Consensus 1860 q 1860 (2281)
T CHL00206 1860 Q 1860 (2281)
T ss_pred c
Confidence 6
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-26 Score=257.50 Aligned_cols=262 Identities=26% Similarity=0.438 Sum_probs=216.0
Q ss_pred CCCccc--ccCcHHHHHHH-HHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCcc
Q 001309 797 GVTFDD--IGALENVKDTL-KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSI 872 (1103)
Q Consensus 797 ~~sfdd--I~G~e~ik~~L-~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-~fi~v~~s~L 872 (1103)
.-.|++ |+|++.--..+ +++...-.--|++..+.|+. .-+|+|||||||||||.+||.|.+-+++ +---+|.+++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~-HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK-HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc-ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 345666 88987665554 45555445567888888854 4589999999999999999999998864 4556889999
Q ss_pred ccccccccHHHHHHHHHHHHhcC--------CeEEEEccccccccCCCCCch-hHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~--------PsILfIDEID~L~~~r~~~~~-~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
.++|+|++|..++.+|..|.... --||++||||.++.+|++... ......+.++|+.-+||...- .+|+
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 99999999999999999985421 359999999999999887544 567889999999999998654 6799
Q ss_pred EEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 944 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 944 VIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~----~l~~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
||+-||+.+.+|++++| ||...+++.+||..-|.+|++.+.+++ .+..++|+++||.+|..|||++|..+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999988774 356899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 001309 1018 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1072 (1103)
Q Consensus 1018 a~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s 1072 (1103)
...|+.|.+...-.. ...+...+...++++||..|++.++|.+-
T Consensus 452 ~S~A~nR~vk~~~~~-----------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKV-----------EVDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred HHHHHHhhhccCcce-----------ecCchhhhheeecHHHHHHHHHhcCcccC
Confidence 999988865433110 11122334567999999999999999974
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=5.2e-24 Score=239.50 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=153.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhc-----CCeEEEEcccccc
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 907 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~-----~PsILfIDEID~L 907 (1103)
.++|++++||||||||||++|+++|++++++++.+++++|.++|.|++++.++++|..|... +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred ccCCCCCchhHHHHHH-HHhHHhhhcCCc----------ccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHH
Q 001309 908 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 974 (1103)
Q Consensus 908 ~~~r~~~~~~~~l~~v-l~~LL~~ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~e 974 (1103)
++.+.+. ......++ ..+|+..+|+.. .....+|.||+|||+|+.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9888643 23333344 478998887631 1235679999999999999999999 999764 589999
Q ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHcCC----CcHHHHHHHHHHHHhhhhHH
Q 001309 975 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIRE 1024 (1103)
Q Consensus 975 eR~eIL~~ll~~~~l~~dvdl~~LA~~TeG----ySg~DL~~L~~~Aa~~aire 1024 (1103)
+|.+|++.++++..+. ..++..|+..+.| |.|+--..+..++...-+.+
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 6788888888876 44544444444444444433
No 40
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.5e-24 Score=235.28 Aligned_cols=232 Identities=24% Similarity=0.298 Sum_probs=181.2
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 377 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 377 (1103)
+.-+|||+..--. |....=|.++.-..|+|++. |-+ .+.| -..+||.||||| ...+||||.||+-+|.++=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PEl--F~~~GI~P-PKGVLLYGPPGT--GKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPEL--FEELGIDP-PKGVLLYGPPGT--GKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHH--HHHcCCCC-CCceEeeCCCCC--cHHHHHHHHHhccCceEEEe
Confidence 3456788877776 77777889999999999998 433 3333 467999999999 69999999999999998755
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
=.|. -|
T Consensus 217 vgSE--------------------------------------------------------------------------lV 222 (406)
T COG1222 217 VGSE--------------------------------------------------------------------------LV 222 (406)
T ss_pred ccHH--------------------------------------------------------------------------HH
Confidence 3211 12
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCch
Q 001309 458 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 536 (1103)
Q Consensus 458 -k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~ 536 (1103)
||+|..
T Consensus 223 qKYiGEG------------------------------------------------------------------------- 229 (406)
T COG1222 223 QKYIGEG------------------------------------------------------------------------- 229 (406)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 788861
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCCcc
Q 001309 537 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRK 603 (1103)
Q Consensus 537 ~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k 603 (1103)
-.++.+||+++.+ +.|.|||||+||.+=+ +..|.-..+...|..| +|+|-||.|||++|-
T Consensus 230 --aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~-- 302 (406)
T COG1222 230 --ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI-- 302 (406)
T ss_pred --hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc--
Confidence 1356699999988 9999999999999433 2344444444445555 359999999997665
Q ss_pred ccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhh
Q 001309 604 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 681 (1103)
Q Consensus 604 ~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd 681 (1103)
||| |||| ||||.++||+||
T Consensus 303 --------------------LDP---------------------------------------ALLRPGR~DRkIEfplPd 323 (406)
T COG1222 303 --------------------LDP---------------------------------------ALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred --------------------cCh---------------------------------------hhcCCCcccceeecCCCC
Confidence 555 9999 999999999999
Q ss_pred hhcccchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHH
Q 001309 682 LKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 760 (1103)
Q Consensus 682 ~~gR~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~ 760 (1103)
+.||.+|++|||+ |. --+++|++.||..|.|++||||+++|++|--+|++... ..++..||+
T Consensus 324 ~~gR~~Il~IHtrkM~--l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~ 386 (406)
T COG1222 324 EEGRAEILKIHTRKMN--LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDFL 386 (406)
T ss_pred HHHHHHHHHHHhhhcc--CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHHH
Confidence 9999999999996 43 12789999999999999999999999999999997322 234678888
Q ss_pred hhhhhhh
Q 001309 761 GIQSESK 767 (1103)
Q Consensus 761 ~a~~eik 767 (1103)
.+..++.
T Consensus 387 ~Av~KV~ 393 (406)
T COG1222 387 KAVEKVV 393 (406)
T ss_pred HHHHHHH
Confidence 8765553
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-23 Score=234.06 Aligned_cols=250 Identities=19% Similarity=0.265 Sum_probs=199.2
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
++.+|.||..--. ++.|.+|-+|+...+..++|.+ .+-..++.+||-||||| ...|||||+|.+.+..+.-+-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~---GirrPWkgvLm~GPPGT--GKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFK---GIRRPWKGVLMVGPPGT--GKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHh---hcccccceeeeeCCCCC--cHHHHHHHHHHhhcCeEEEec
Confidence 4667999987776 9999999999999999888654 67789999999999999 699999999999998877776
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
|+.+.. |
T Consensus 278 sstltS-------------------------------------------------------------------------K 284 (491)
T KOG0738|consen 278 SSTLTS-------------------------------------------------------------------------K 284 (491)
T ss_pred hhhhhh-------------------------------------------------------------------------h
Confidence 544322 6
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|. .
T Consensus 285 wRGe---------------------------------------------------------------------------S 289 (491)
T KOG0738|consen 285 WRGE---------------------------------------------------------------------------S 289 (491)
T ss_pred hccc---------------------------------------------------------------------------h
Confidence 6664 1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--c-------ChhhHHHHHHHHhcCCC---C---EEEEeeccCCCCcc
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLT--G-------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSRK 603 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--~-------~~~~~~~l~~~L~~l~g---~---vvvIgs~~~~d~~k 603 (1103)
..++..|||++.- ..|.+||||+||.+-+ | +.++.+-|.-.++.+.+ + |.|++|||
T Consensus 290 EKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------ 360 (491)
T KOG0738|consen 290 EKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------ 360 (491)
T ss_pred HHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------
Confidence 2345567777666 9999999999999443 1 34444444444444433 5 99999999
Q ss_pred ccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhh
Q 001309 604 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 683 (1103)
Q Consensus 604 ~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~ 683 (1103)
+||++|+ |||||||..+++||||.+
T Consensus 361 ------------------------~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 361 ------------------------FPWDIDE-------------------------------ALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred ------------------------CCcchHH-------------------------------HHHHHHhhheeeeCCCHH
Confidence 8999986 999999999999999999
Q ss_pred cccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchh--hhHHHHH
Q 001309 684 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQ 760 (1103)
Q Consensus 684 gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~--v~~~df~ 760 (1103)
+|..+++|- |+.-.+ ++++++.||+.+.||+|+||.-+|+.|..++++|+..-........+..+.++ +...||+
T Consensus 386 ~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe 463 (491)
T KOG0738|consen 386 ARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFE 463 (491)
T ss_pred HHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHH
Confidence 999999998 777666 78899999999999999999999999999999987654433444445555555 7788898
Q ss_pred hhhhhhhhh
Q 001309 761 GIQSESKSL 769 (1103)
Q Consensus 761 ~a~~eik~~ 769 (1103)
.++..+.+.
T Consensus 464 ~Al~~v~pS 472 (491)
T KOG0738|consen 464 EALRKVRPS 472 (491)
T ss_pred HHHHHcCcC
Confidence 888777654
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=239.39 Aligned_cols=249 Identities=23% Similarity=0.322 Sum_probs=197.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|+..+|+|||+-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998644333 22
Q ss_pred hHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHH
Q 001309 917 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 996 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~ 996 (1103)
.......++.++. .+- ......+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||+.++....+..++.++
T Consensus 511 d~rl~~~i~~~ls-~e~-~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NED-FKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-ccc-ccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2233344444443 122 22244789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccc
Q 001309 997 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL-ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1075 (1103)
Q Consensus 997 ~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l-~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~ 1075 (1103)
.+|..|.||+.++|..++..+-..+..++..+. ..... ...++. -......++++||.+|+.+++..++...
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-l~g~~~~~~~~~------~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-LAGGLQEEDEGE------LCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-ccccchhccccc------cccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998877333333321111 00000 000000 1123368999999999999999887655
Q ss_pred cc-chhhhHHHHhhcCCCccc
Q 001309 1076 TN-MNELLQWNELYGEGGSRK 1095 (1103)
Q Consensus 1076 ~~-~~~~v~W~digG~~~~Rk 1095 (1103)
.+ .+|+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 44 999999999999999885
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.87 E-value=5.8e-20 Score=229.36 Aligned_cols=378 Identities=19% Similarity=0.234 Sum_probs=213.1
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeec
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 615 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~ 615 (1103)
+..+++-+.. ..|.||||||++.++. ++.+..+.|+..|+ +|.+.|||+||..
T Consensus 263 l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~---------------- 321 (731)
T TIGR02639 263 LKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYE---------------- 321 (731)
T ss_pred HHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHH----------------
Confidence 3344444433 6799999999999764 23567888998887 7999999999931
Q ss_pred cCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccchhHHHHHh
Q 001309 616 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVL 695 (1103)
Q Consensus 616 ~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l 695 (1103)
.++...+.+.++.++|. +|+|.+|+.+..+..++..... .+ ..|
T Consensus 322 ----------------------e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~----~e------~~~--- 365 (731)
T TIGR02639 322 ----------------------EYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK----YE------EFH--- 365 (731)
T ss_pred ----------------------HHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH----HH------hcc---
Confidence 12223344567777784 7788888777765544432111 00 001
Q ss_pred hhCCCCccchhhhhhccCCCCH------HHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhhhhhhh
Q 001309 696 SRNGLDCVDLESLCIKDQTLTT------EGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSL 769 (1103)
Q Consensus 696 ~~~~l~~~~L~~La~~tkg~sg------adI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~eik~~ 769 (1103)
.-.+.+..+..++.....|-+ ..| .++.+|....-.+... . ....+...++..+.......
T Consensus 366 -~v~i~~~al~~~~~ls~ryi~~r~~P~kai-~lld~a~a~~~~~~~~----~-------~~~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 366 -HVKYSDEALEAAVELSARYINDRFLPDKAI-DVIDEAGASFRLRPKA----K-------KKANVSVKDIENVVAKMAHI 432 (731)
T ss_pred -CcccCHHHHHHHHHhhhcccccccCCHHHH-HHHHHhhhhhhcCccc----c-------cccccCHHHHHHHHHHHhCC
Confidence 012234444444444433322 122 2233332211111000 0 11223444444333222211
Q ss_pred h--hh-hhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEc
Q 001309 770 K--KS-LKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFG 843 (1103)
Q Consensus 770 ~--~s-ik~~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l---~~p~~gVLL~G 843 (1103)
. .- ..+..........+ -..++|++.+++.+.+.+... +.++ .+|...+||+|
T Consensus 433 P~~~~~~~~~~~l~~l~~~l-------------~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~G 491 (731)
T TIGR02639 433 PVKTVSVDDREKLKNLEKNL-------------KAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTG 491 (731)
T ss_pred ChhhhhhHHHHHHHHHHHHH-------------hcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEEC
Confidence 1 00 00000011111111 125889999999998877631 1222 23444589999
Q ss_pred CCCChHHHHHHHHHHHhCCcEEEEecCccccc-----cccccHH-----HHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 844 PPGTGKTMLAKAVATEAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 844 PpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~-----~~G~~e~-----~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
|+|||||++|+++|+.++.+++.++++++... .+|.... ....+....+..+.+||||||||.+ .
T Consensus 492 p~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~ 566 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----H 566 (731)
T ss_pred CCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----C
Confidence 99999999999999999999999999875432 2221111 1122344445666799999999987 2
Q ss_pred CchhHHHHHHHHhHHhhhcCCcc-------cCCccEEEEEecCCC-------------------------CCCcHHHHhc
Q 001309 914 PGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNRP-------------------------FDLDEAVVRR 961 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL~~ldgl~~-------k~~~~VlVIaTTN~p-------------------------~~Ld~aLlrR 961 (1103)
+ .+.+.|+..++...- -+-.+.++|+|||.. ..+.|.++.|
T Consensus 567 ~-------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~R 639 (731)
T TIGR02639 567 P-------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNR 639 (731)
T ss_pred H-------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhc
Confidence 2 233344444432211 112467899998753 1256788899
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhcc---------c-CCcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhh
Q 001309 962 LPRRLMVNLPDAPNREKIIRVILAKEE---------L-ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPI 1022 (1103)
Q Consensus 962 F~~~I~l~lPd~eeR~eIL~~ll~~~~---------l-~~dvdl~~LA~~T--eGySg~DL~~L~~~Aa~~ai 1022 (1103)
++.++.|.+.+.++..+|++..+.+.. + .++..++.|+... ..|..+.|+.+++.....++
T Consensus 640 id~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 640 LDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 999999999999999999999886421 1 1333345565542 24445666666655544443
No 44
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=229.58 Aligned_cols=260 Identities=21% Similarity=0.285 Sum_probs=205.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWF 877 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~s~~~ 877 (1103)
|++-...++++..+....|. .+ ..+|||+||+|+|||.|+++++.++ -+++..++|+.+....+
T Consensus 409 d~i~~~s~kke~~n~~~spv-----------~~-~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPV-----------FR-HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhcccc-----------cc-cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45555666666555333221 22 2479999999999999999999998 46788999999998888
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC-CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~-~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
....+.+..+|..|.+++|+||++|++|.|++...+ .+........+..+++.+-....+.+..+.|||+.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 888899999999999999999999999999974332 2233333444555554444444445677899999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001309 957 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1033 (1103)
Q Consensus 957 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~ 1033 (1103)
.+.+ +|+.++.++.|+..+|.+|++.++++.... ...|++.++..|+||...||..++++|.+.+.++.+..
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~----- 631 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN----- 631 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-----
Confidence 9888 799999999999999999999999885522 34456669999999999999999999999888543211
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhh-hHHHHhhcCCCccc
Q 001309 1034 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1095 (1103)
Q Consensus 1034 ~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~-v~W~digG~~~~Rk 1095 (1103)
....+|.++|.++++.+.|....+.....+. ..|.||||..+.|+
T Consensus 632 -----------------~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 632 -----------------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred -----------------CcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 1126999999999999999998887775555 99999999988875
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-19 Score=224.15 Aligned_cols=165 Identities=18% Similarity=0.276 Sum_probs=116.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc----
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 874 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l---~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s---- 874 (1103)
.|+|++++++.|.+.+.... .++ .+|...+||+||||||||++|+++|..++.+++.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 58999999999999886421 122 345557999999999999999999999999999999987532
Q ss_pred -ccccccHHHH----HHHH-HHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc-------cCCcc
Q 001309 875 -KWFGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKER 941 (1103)
Q Consensus 875 -~~~G~~e~~i----~~lF-~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~-------k~~~~ 941 (1103)
.++|....++ ...+ ...++.+.+||||||||.+- ..+.+.|+..++.-.- .+-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 1233 33345566999999999882 2244445544442111 11256
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 942 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 942 VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+++|+|||.- ..+.|+|+.|++.++.|.+.+.++..+|+..++.+
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8899999831 13668899999999999999999999999888764
No 46
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.6e-21 Score=213.96 Aligned_cols=233 Identities=21% Similarity=0.351 Sum_probs=190.5
Q ss_pred HHHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001309 286 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 365 (1103)
Q Consensus 286 ~~~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakA 365 (1103)
-|+.-+.-.+|.+++|.|+|++.--. |.+|+.|-+..-..|+++++.++ ..|...+..|||.||||| -..|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG~--GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPGT--GKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCCc--hHHHHHHH
Confidence 46777888999999999999998888 99999999999999999999764 467779999999999999 69999999
Q ss_pred HHhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccc
Q 001309 366 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 445 (1103)
Q Consensus 366 LA~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 445 (1103)
+|++-||.+.-|+.+.+-+
T Consensus 147 ~Akeaga~fInv~~s~lt~------------------------------------------------------------- 165 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTS------------------------------------------------------------- 165 (386)
T ss_pred HHHHcCCCcceeeccccch-------------------------------------------------------------
Confidence 9999999988777644332
Q ss_pred cCcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccc
Q 001309 446 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 525 (1103)
Q Consensus 446 ~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~ 525 (1103)
||+|.
T Consensus 166 ------------KWfgE--------------------------------------------------------------- 170 (386)
T KOG0737|consen 166 ------------KWFGE--------------------------------------------------------------- 170 (386)
T ss_pred ------------hhHHH---------------------------------------------------------------
Confidence 33332
Q ss_pred cccccCCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Chh----hHHHHHHHHhcCCC----CEEEE
Q 001309 526 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NND----AYGALKSKLENLPS----NVVVI 593 (1103)
Q Consensus 526 ~l~~d~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~~~----~~~~l~~~L~~l~g----~vvvI 593 (1103)
..-++.++|-+.. |.+|.||||+++|.+|.. .-| +.+-|...++.|.- .|+|+
T Consensus 171 ------------~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 171 ------------AQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ------------HHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 2233456666665 499999999999998862 122 33455667777742 69999
Q ss_pred eeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHH
Q 001309 594 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 673 (1103)
Q Consensus 594 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRfer 673 (1103)
||||+ |.++| +|.+||+.+
T Consensus 236 gATNR------------------------------P~DlD-------------------------------eAiiRR~p~ 254 (386)
T KOG0737|consen 236 GATNR------------------------------PFDLD-------------------------------EAIIRRLPR 254 (386)
T ss_pred eCCCC------------------------------CccHH-------------------------------HHHHHhCcc
Confidence 99994 44454 499999999
Q ss_pred HHhhchhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccC
Q 001309 674 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 737 (1103)
Q Consensus 674 q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~ 737 (1103)
.|.+++|+.+.|..||++- +..-.+ +++|++++|..|+||+|.||..+|+.|+...++....
T Consensus 255 rf~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999887 666667 8899999999999999999999999999887765443
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=1.1e-18 Score=195.39 Aligned_cols=237 Identities=16% Similarity=0.245 Sum_probs=170.2
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 871 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p--~~gVLL~GPpGTGKT~LAkAIA~el-------g~~fi~v~~s~ 871 (1103)
.+++|++.+|+++.+++.+ +..++.+...++..+ +.++||+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999998765 334455555555443 3459999999999999999999876 23689999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC
Q 001309 872 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p 951 (1103)
+.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999899988777788888764 489999999998643321 123345566666666542 2557888887642
Q ss_pred -----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHH----c--CCCc-HHHHHHHHHHHH
Q 001309 952 -----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAA 1018 (1103)
Q Consensus 952 -----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~----T--eGyS-g~DL~~L~~~Aa 1018 (1103)
..++|++.+||+..+.|+.++.+++.+|++.++.+.... ++.....+... . +.+. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 3344 799999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHH
Q 001309 1019 HCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKY 1062 (1103)
Q Consensus 1019 ~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~ 1062 (1103)
.+...|+..... ...+.++...++.+||.+
T Consensus 252 ~~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGG--------------RVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhH
Confidence 877777644311 112334667888888864
No 48
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-19 Score=195.26 Aligned_cols=222 Identities=21% Similarity=0.328 Sum_probs=173.5
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001309 287 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 366 (1103)
Q Consensus 287 ~~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 366 (1103)
++..|.-.|| -|+-+|-|+.---. |..|.+|-+|+-...|.+.+... =....+.|||.||||| ..-.||||+
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtG---kR~PwrgiLLyGPPGT--GKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTG---KRKPWRGILLYGPPGT--GKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcC---CCCcceeEEEeCCCCC--cHHHHHHHH
Confidence 4444555555 36778999988888 99999999999999998877432 2345789999999999 699999999
Q ss_pred HhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCccccccc
Q 001309 367 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 446 (1103)
Q Consensus 367 A~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 446 (1103)
|.+-+..+.-+.|++|-.
T Consensus 187 ATEAnSTFFSvSSSDLvS-------------------------------------------------------------- 204 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLVS-------------------------------------------------------------- 204 (439)
T ss_pred HhhcCCceEEeehHHHHH--------------------------------------------------------------
Confidence 998876666655544322
Q ss_pred CcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCccccccc
Q 001309 447 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 526 (1103)
Q Consensus 447 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 526 (1103)
||.|.
T Consensus 205 -----------KWmGE---------------------------------------------------------------- 209 (439)
T KOG0739|consen 205 -----------KWMGE---------------------------------------------------------------- 209 (439)
T ss_pred -----------HHhcc----------------------------------------------------------------
Confidence 45543
Q ss_pred ccccCCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----hhhHHHHHHHHh-cC------CCCEEEEe
Q 001309 527 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----NDAYGALKSKLE-NL------PSNVVVIG 594 (1103)
Q Consensus 527 l~~d~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~-----~~~~~~l~~~L~-~l------~g~vvvIg 594 (1103)
...++..|||++.+ +.|.||||++||. +|++ .+.-..|+..|. ++ ...|+|+|
T Consensus 210 -----------SEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 210 -----------SEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred -----------HHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 23456789999888 9999999999995 8832 344444554443 22 34899999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHH
Q 001309 595 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 674 (1103)
Q Consensus 595 s~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 674 (1103)
||| .|+.+|. |.||||++.
T Consensus 275 ATN------------------------------iPw~LDs-------------------------------AIRRRFekR 293 (439)
T KOG0739|consen 275 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 293 (439)
T ss_pred cCC------------------------------CchhHHH-------------------------------HHHHHhhcc
Confidence 999 7777775 999999999
Q ss_pred HhhchhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhh
Q 001309 675 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALS 729 (1103)
Q Consensus 675 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s 729 (1103)
+|+|||+..+|..+++||--..-+.|...|+.+|+.+|.||+|+||.-+|+.|.-
T Consensus 294 IYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 294 IYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred eeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 9999999999999999994445566899999999999999999999888877643
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=3.3e-18 Score=191.40 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=171.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 872 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~--p~~gVLL~GPpGTGKT~LAkAIA~elg-------~~fi~v~~s~L 872 (1103)
+++|++++|+++.+.+.. +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998776 44555666555533 556899999999999999999988762 37999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 951 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p- 951 (1103)
.+.++|..+..+..+|..|.. +||||||++.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 888999888888888887754 89999999998643321 122334555666666532 2567888887542
Q ss_pred -C---CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc------CC-CcHHHHHHHHHHHHh
Q 001309 952 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------DG-YSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 952 -~---~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T------eG-ySg~DL~~L~~~Aa~ 1019 (1103)
+ .+++++.+||+..+.|+.++.+++.+|++.++.+.... ++..+..++... +. -++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999885432 233334444431 11 257899999999987
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 001309 1020 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1063 (1103)
Q Consensus 1020 ~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~A 1063 (1103)
+...++..... ......+...++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77666543211 0123345677888888654
No 50
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.7e-18 Score=188.71 Aligned_cols=207 Identities=26% Similarity=0.439 Sum_probs=165.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
..|++++-.......|+.+...--. .+ .-..|.++||+|||||||||++|+.||.+.|..+-.+...++... -
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaN-----TK-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATAN-----TK-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcc-----cc-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 3588888888888888886543111 01 113466889999999999999999999999999988888775432 2
Q ss_pred cccHHHHHHHHHHHHhcCCe-EEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 878 GEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~Ps-ILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
...-..|..+|..|++...+ +|||||.|.++..|......+..+..+|.|+..-.. ....++++.+||+|.+||.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 23455789999999988765 778999999998888777788888899998865322 2356889999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhccc---------------------------CCcccHHHHHHHcCCCcHHH
Q 001309 957 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---------------------------ASDVDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 957 aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l---------------------------~~dvdl~~LA~~TeGySg~D 1009 (1103)
++-.||+.+++|++|..++|.+++..|+.+.-. ..+..+.+.|..|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 999999999999999999999999999876321 11223678999999999999
Q ss_pred HHHHHH
Q 001309 1010 LKNLCV 1015 (1103)
Q Consensus 1010 L~~L~~ 1015 (1103)
|..|+.
T Consensus 581 iakLva 586 (630)
T KOG0742|consen 581 IAKLVA 586 (630)
T ss_pred HHHHHH
Confidence 998864
No 51
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=3.5e-18 Score=188.77 Aligned_cols=216 Identities=15% Similarity=0.215 Sum_probs=154.8
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecC
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 870 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~--p~~gVLL~GPpGTGKT~LAkAIA~el-------g~~fi~v~~s 870 (1103)
+++++|++++|+++++.+.++.... ...+.+... ...++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~-~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINE-KRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999887654332 222233322 23579999999999999999999875 3478899999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 871 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
++.+.++|+....++.+|..|. ++||||||+|.|..... .......++.++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888899998775 48999999999853111 112234556666666553 244666666543
Q ss_pred C-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc-------C--CCcHHHHHHHHH
Q 001309 951 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLCV 1015 (1103)
Q Consensus 951 p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T-------e--GySg~DL~~L~~ 1015 (1103)
. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..++... . .-+++.+.++++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 247789999998889999999999999999999875432 333344443321 1 235688888888
Q ss_pred HHHhhhhHHHHH
Q 001309 1016 TAAHCPIREILE 1027 (1103)
Q Consensus 1016 ~Aa~~aireiie 1027 (1103)
.|..+...+++.
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 888776666543
No 52
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.77 E-value=1.3e-16 Score=201.58 Aligned_cols=203 Identities=20% Similarity=0.231 Sum_probs=129.2
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 874 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l---~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s 874 (1103)
+.++|++.+++.+...+... +.++ .+|...+||+||+|+|||+||+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998887631 1121 3444558999999999999999999987 46899999887532
Q ss_pred c-----cccccHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc-------cc
Q 001309 875 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 937 (1103)
Q Consensus 875 ~-----~~G~~e~~-----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~-------~k 937 (1103)
. .+|....+ ...+....++.+.+||+|||||.+ . ..+.+.|+..++... .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~-------~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----H-------PDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----C-------HHHHHHHHHHhccCceecCCCcEE
Confidence 1 22221111 123445555666699999999987 2 223344444444211 11
Q ss_pred CCccEEEEEecCCCC-------------------------------------CCcHHHHhccccccccCCCCHHHHHHHH
Q 001309 938 DKERVLVLAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKII 980 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~-------------------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 980 (1103)
+-.+.++|+|||... .+.|+|+.|++.++.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 125789999987421 0235778899999999999999999999
Q ss_pred HHHHhhcc---------cC-CcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhH
Q 001309 981 RVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 981 ~~ll~~~~---------l~-~dvdl~~LA~~T--eGySg~DL~~L~~~Aa~~air 1023 (1103)
+..+.+.. +. ++...+.|+... ..|-.+.|+.+++.-...++.
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 88876521 11 223344555542 234455666555555444433
No 53
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-18 Score=189.87 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=158.3
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------
Q 001309 788 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 860 (1103)
Q Consensus 788 ~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el------- 860 (1103)
.+++|..+-.--|+.++--..+|+.|..++...+...+.-....+..-.+-+||+||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 3456665556678888888899999999887766554433333333333558999999999999999999998
Q ss_pred --CCcEEEEecCccccccccccHHHHHHHHHHHHhcC---C--eEEEEccccccccCCCC---CchhHHHHHHHHhHHhh
Q 001309 861 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 861 --g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~---P--sILfIDEID~L~~~r~~---~~~~~~l~~vl~~LL~~ 930 (1103)
....+++++..+.++||+++.+.+..+|......- . ..++|||++.|...|.+ ..+....-++.+.++++
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 34679999999999999999999999998775432 2 35669999999876632 22333445788999999
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 931 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 931 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+|.+... .+|++++|+|-.+.+|.++..|-+-+.++.+|+.+.|.+|++..+.+
T Consensus 289 lDrlK~~--~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKRY--PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhccC--CCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9998654 67999999999999999999999999999999999999999998876
No 54
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=1.6e-16 Score=200.56 Aligned_cols=201 Identities=22% Similarity=0.271 Sum_probs=128.5
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 874 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~---~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s 874 (1103)
..++|++.+.+.+.+.+... +.++. +|...+||+||+|+|||++|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35899999999998887642 12222 333348999999999999999999998 45789999876532
Q ss_pred c------------cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc-----
Q 001309 875 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK----- 937 (1103)
Q Consensus 875 ~------------~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k----- 937 (1103)
. |+|..+. ..+....++.+.+||+|||||.+ .+ .+.+.|+..++...-.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~-------~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HP-------DVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CH-------HHHHHHHHHhhcceeecCCCc
Confidence 2 2232211 12334445667799999999876 22 2333333333321100
Q ss_pred --CCccEEEEEecCCCC-----------------------------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 938 --DKERVLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 938 --~~~~VlVIaTTN~p~-----------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+-.+.+||+|||... .+.|+|++|++ ++.|.+.+.++..+|+...+..
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 125688999987411 25577888996 8899999999999999887754
Q ss_pred c--------cc---CCcccHHHHHHHcCC--CcHHHHHHHHHHHHhhhhHH
Q 001309 987 E--------EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1024 (1103)
Q Consensus 987 ~--------~l---~~dvdl~~LA~~TeG--ySg~DL~~L~~~Aa~~aire 1024 (1103)
. ++ .++...+.|+....+ |-.+.|.++++.-...++.+
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2 11 133335556665532 45667777766655554443
No 55
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=4.4e-18 Score=166.04 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=114.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchh
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 917 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~ 917 (1103)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..++.+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998888999999999999999888 9999999999998776 33445
Q ss_pred HHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHH-hccccccccCC
Q 001309 918 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 970 (1103)
Q Consensus 918 ~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRF~~~I~l~l 970 (1103)
.....+.+.++..++..... ..+++||+|||.++.++++++ +||+.++.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56667788888888876543 367999999999999999999 99998887763
No 56
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-18 Score=197.48 Aligned_cols=221 Identities=24% Similarity=0.393 Sum_probs=168.8
Q ss_pred HHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001309 291 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 370 (1103)
Q Consensus 291 l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 370 (1103)
|...|.|-+.++|+|+.---- |+.|.=|-+-+- .||.+. ||++-=--.-+.|||.||||| ...+||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPGT--GKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPGT--GKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCCC--chhHHHHHhhccc
Confidence 457788888899999986666 999999999876 677754 466544566789999999999 6999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCccc
Q 001309 371 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 450 (1103)
Q Consensus 371 ~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (1103)
++++.-- .| ||
T Consensus 362 ~VPFF~~-----sG------------SE---------------------------------------------------- 372 (752)
T KOG0734|consen 362 GVPFFYA-----SG------------SE---------------------------------------------------- 372 (752)
T ss_pred CCCeEec-----cc------------cc----------------------------------------------------
Confidence 9886421 11 00
Q ss_pred ccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCccccccccccc
Q 001309 451 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 530 (1103)
Q Consensus 451 ~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d 530 (1103)
| |- .|||-.
T Consensus 373 F---dE-m~VGvG------------------------------------------------------------------- 381 (752)
T KOG0734|consen 373 F---DE-MFVGVG------------------------------------------------------------------- 381 (752)
T ss_pred h---hh-hhhccc-------------------------------------------------------------------
Confidence 0 00 234320
Q ss_pred CCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--C-hhh------HHHHHHHHhcCC--CCEEEEeeccCC
Q 001309 531 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--N-NDA------YGALKSKLENLP--SNVVVIGSHTQL 599 (1103)
Q Consensus 531 ~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--~-~~~------~~~l~~~L~~l~--g~vvvIgs~~~~ 599 (1103)
-.-+..||.-+.. +.|+|||||++|. +++ + .+. .+.+...|+.+. .+||||||||
T Consensus 382 --------ArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN-- 447 (752)
T KOG0734|consen 382 --------ARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN-- 447 (752)
T ss_pred --------HHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC--
Confidence 1113366665555 9999999999999 552 2 222 233333344342 3999999999
Q ss_pred CCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhh
Q 001309 600 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 677 (1103)
Q Consensus 600 d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~ 677 (1103)
|||++|+ ||.| |||+|+-.
T Consensus 448 ----------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 448 ----------------------------FPEALDK-------------------------------ALTRPGRFDRHVTV 468 (752)
T ss_pred ----------------------------ChhhhhH-------------------------------HhcCCCccceeEec
Confidence 6777775 9999 99999999
Q ss_pred chhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 678 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 678 ~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
|+||..||.+||+.| |..-.+ .++|+.-+|.-|.||+||||+.+|+.|+.+|-+
T Consensus 469 p~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 999999999999999 566666 689999999999999999999999999999876
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.73 E-value=4.5e-16 Score=196.88 Aligned_cols=173 Identities=20% Similarity=0.337 Sum_probs=109.9
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l---~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
+..++|++.+++.+...+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++|+++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 356899999999998887641 1122 2333468999999999999999999887 4679999998754
Q ss_pred cc-----cccccHHH----HHHHHHHH-HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc-ccCCccE
Q 001309 874 SK-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERV 942 (1103)
Q Consensus 874 s~-----~~G~~e~~----i~~lF~~A-~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~-~k~~~~V 942 (1103)
.. .+|....+ -...+..+ +..+.+||||||++.+ ++..+..+..++..-... ++.. ..+-.+.
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~v~~~Ll~ile~g~l~-d~~gr~vd~rn~ 712 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPDVFNILLQVLDDGRLT-DGQGRTVDFRNT 712 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHHHHHHHHHHHhhCcee-cCCceEEeeccc
Confidence 32 12211100 01223333 3444589999999977 222222222222211100 1100 0112456
Q ss_pred EEEEecCCC-------------------------CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 943 LVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 943 lVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+||+|||.. ..+.|+|+.|++.++.+.+++.++..+|++.++.+
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 788899862 13557889999999999999999999999888865
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=2.6e-17 Score=195.68 Aligned_cols=239 Identities=21% Similarity=0.252 Sum_probs=173.3
Q ss_pred cccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001309 294 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 373 (1103)
Q Consensus 294 ~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 373 (1103)
++++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||.||||| .+.+||||+|++++++
T Consensus 216 ~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpGT--GKTllAkaiA~e~~~~ 286 (489)
T CHL00195 216 EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQGT--GKSLTAKAIANDWQLP 286 (489)
T ss_pred ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCCC--cHHHHHHHHHHHhCCC
Confidence 456666678889888886 8888888764322211 122343 3 34578999999999 6999999999999999
Q ss_pred EEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccC
Q 001309 374 LLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 453 (1103)
Q Consensus 374 LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (1103)
++.+|...+++
T Consensus 287 ~~~l~~~~l~~--------------------------------------------------------------------- 297 (489)
T CHL00195 287 LLRLDVGKLFG--------------------------------------------------------------------- 297 (489)
T ss_pred EEEEEhHHhcc---------------------------------------------------------------------
Confidence 99999755444
Q ss_pred CCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCC
Q 001309 454 GDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSL 533 (1103)
Q Consensus 454 gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~ 533 (1103)
+|+|.
T Consensus 298 ----~~vGe----------------------------------------------------------------------- 302 (489)
T CHL00195 298 ----GIVGE----------------------------------------------------------------------- 302 (489)
T ss_pred ----cccCh-----------------------------------------------------------------------
Confidence 23332
Q ss_pred CchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEEEeeccCCCCccc
Q 001309 534 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVVIGSHTQLDSRKE 604 (1103)
Q Consensus 534 ~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~---------~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~ 604 (1103)
....+..+|+.+.. .+|+||||||+|+++.+. .++...|-..|+.-..+|+|||+||+++.
T Consensus 303 ----se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~--- 372 (489)
T CHL00195 303 ----SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDL--- 372 (489)
T ss_pred ----HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhh---
Confidence 01123466666655 899999999999977631 23444444445555679999999995444
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhh
Q 001309 605 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 682 (1103)
Q Consensus 605 k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 682 (1103)
||+ |++| ||++.+++++|+.
T Consensus 373 -------------------Ld~---------------------------------------allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 373 -------------------LPL---------------------------------------EILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred -------------------CCH---------------------------------------HHhCCCcCCeEEEeCCcCH
Confidence 333 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhC-CCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHh
Q 001309 683 KGQSNIISIRSVLSRN-GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 761 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~-~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~ 761 (1103)
..|..|+++|.....+ ...+.+++.||..|.||+|+||+.+|.+|...|+.... .+...+|..
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~----------------~lt~~dl~~ 458 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR----------------EFTTDDILL 458 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC----------------CcCHHHHHH
Confidence 9999999999753333 34688999999999999999999999999988764211 135667777
Q ss_pred hhhhhhhh
Q 001309 762 IQSESKSL 769 (1103)
Q Consensus 762 a~~eik~~ 769 (1103)
+...+.|+
T Consensus 459 a~~~~~Pl 466 (489)
T CHL00195 459 ALKQFIPL 466 (489)
T ss_pred HHHhcCCC
Confidence 76666654
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.72 E-value=1.5e-15 Score=192.56 Aligned_cols=204 Identities=21% Similarity=0.322 Sum_probs=130.9
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 874 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l---~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s 874 (1103)
..++|++.+++.+.+.+... ..++ .+|...+||+||+|||||++|+++|..+ +.+++.++|+++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999998887642 1121 3455569999999999999999999987 56899999987533
Q ss_pred c-----cccccHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc--c-----c
Q 001309 875 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--T-----K 937 (1103)
Q Consensus 875 ~-----~~G~~e~~-----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~--~-----k 937 (1103)
. .+|....+ ...+....++.+.+||||||||.+ ++. +.+.|+..++.-. . -
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~~-------v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HPD-------VFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CHH-------HHHHHHHHHhcCceecCCCeEE
Confidence 2 11211110 122333445555689999999977 222 2333333332111 0 1
Q ss_pred CCccEEEEEecCCCC-------------------------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----
Q 001309 938 DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE---- 988 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~---- 988 (1103)
+-.+.+||+|||... .+.|.|+.|++.++.+.+++.++..+|+...+....
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 124578999998621 134677779999999999999999999988775311
Q ss_pred ---c---CCcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 001309 989 ---L---ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1024 (1103)
Q Consensus 989 ---l---~~dvdl~~LA~~T--eGySg~DL~~L~~~Aa~~aire 1024 (1103)
+ .++..++.|+... ..+..+.|+++++.....++.+
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 1 1233345555542 2455677877777776655554
No 60
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-16 Score=191.16 Aligned_cols=248 Identities=36% Similarity=0.537 Sum_probs=215.9
Q ss_pred ccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEE
Q 001309 820 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVV 899 (1103)
Q Consensus 820 pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsIL 899 (1103)
|+..++.|...+ ..++.+++++||||+|||.++++++.. +..+..++.+...+++.+..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 556677777766 456689999999999999999999999 776688889999999999999999999999999999999
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHH
Q 001309 900 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE 977 (1103)
Q Consensus 900 fIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~ 977 (1103)
++||+|.+.+.+.. ........+..+++..++++. ... +++++.+|.+..+++++++ ||+..+.+..|+...|.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988876 555677788999999999988 345 9999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccH
Q 001309 978 KIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKM 1057 (1103)
Q Consensus 978 eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~ 1057 (1103)
+|+...........+.+...++..+.||+++++..+|..+...++++.+ ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999988887777788999999999999999999999999888887753 01112346899
Q ss_pred HHHHHHHHHhccCcccccccchhhhHHHHhhcCCCccc
Q 001309 1058 DDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1095 (1103)
Q Consensus 1058 eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~Rk 1095 (1103)
+||.++++++.++ .+.....+.+.|.|+||++..|.
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 9999999999998 66667889999999999887764
No 61
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-15 Score=186.69 Aligned_cols=366 Identities=20% Similarity=0.255 Sum_probs=211.5
Q ss_pred HHHHHhhccCCCCeEEEEcChhhhhc-c-----ChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCc
Q 001309 545 LFEVALNESKSSPLIVFVKDIEKSLT-G-----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 618 (1103)
Q Consensus 545 l~evl~~e~~~~p~Ilf~~d~e~~l~-~-----~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~ 618 (1103)
|-.|+.+..+..++|||||+++.+++ | +.+.-+.+|.+|. +|.+-+||||+.
T Consensus 251 lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~-------------------- 308 (786)
T COG0542 251 LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTL-------------------- 308 (786)
T ss_pred HHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccH--------------------
Confidence 34455555556699999999999877 2 3889999999999 999999999992
Q ss_pred chhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhH---HH----HHHHHHhhchhhhhcccchhHH
Q 001309 619 NQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEAL---LS----DWKQQLERDVETLKGQSNIISI 691 (1103)
Q Consensus 619 ~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeAL---lR----Rferq~e~~Lpd~~gR~~Il~I 691 (1103)
++||...+.+.+|.++| .+|.|..|.-+.- || ||+.+-..-..|..-....
T Consensus 309 ------------------~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv--- 366 (786)
T COG0542 309 ------------------DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAV--- 366 (786)
T ss_pred ------------------HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHH---
Confidence 46777888899999999 8999999965544 33 7887666555553300000
Q ss_pred HHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCC--cc-ccccC----------chhhhHHH
Q 001309 692 RSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDA--KL-KISTE----------SIMYGLNI 758 (1103)
Q Consensus 692 hT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~--kl-~id~~----------sI~v~~~d 758 (1103)
.|...-+++.+ +....|.-+-..++...++...|...... .+ .+..+ .-+.....
T Consensus 367 --~LS~RYI~dR~----------LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~ 434 (786)
T COG0542 367 --TLSDRYIPDRF----------LPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDE 434 (786)
T ss_pred --HHHHhhcccCC----------CCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 02222222222 22222322222222222221111000000 00 00000 00000000
Q ss_pred HHhhh-hhhhhhhhhhhhhcchhHHHHhhhcC-CCCCCCC-----------CCCc-ccccCcHHHHHHHHHHHhcccCCh
Q 001309 759 LQGIQ-SESKSLKKSLKDVVTENEFEKKLLAD-VIPPSDI-----------GVTF-DDIGALENVKDTLKELVMLPLQRP 824 (1103)
Q Consensus 759 f~~a~-~eik~~~~sik~~v~~~e~~k~ll~~-iip~~e~-----------~~sf-ddI~G~e~ik~~L~e~V~~pl~~p 824 (1103)
..... ..+......+..-++.++.......+ -||.... ...+ ..++|++++...+.+.+..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr----- 509 (786)
T COG0542 435 IIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR----- 509 (786)
T ss_pred HHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH-----
Confidence 00000 00000000000001111111111110 1221100 0011 3589999999999988864
Q ss_pred hhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccc-----cccccHHHH----HHHHH
Q 001309 825 ELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK-----WFGEGEKYV----KAVFS 889 (1103)
Q Consensus 825 e~f~~~~l---~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s~L~s~-----~~G~~e~~i----~~lF~ 889 (1103)
.+.|+ .+|...+||.||+|+|||.||+++|..+. -.++.+||+++..+ .+|.+..++ ...+.
T Consensus 510 ---aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LT 586 (786)
T COG0542 510 ---ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLT 586 (786)
T ss_pred ---HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchh
Confidence 23344 44555689999999999999999999995 88999999986433 222222111 23445
Q ss_pred HH-HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccC-------CccEEEEEecCCC----------
Q 001309 890 LA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNRP---------- 951 (1103)
Q Consensus 890 ~A-~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~-------~~~VlVIaTTN~p---------- 951 (1103)
+| ++.+.+||++|||+.- ...+++.|+..+|.-.-.+ =.+.+||+|||--
T Consensus 587 EaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~ 654 (786)
T COG0542 587 EAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADG 654 (786)
T ss_pred HhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccc
Confidence 55 4455699999999864 3567788887776433222 1568999999741
Q ss_pred ------------------CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 952 ------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 952 ------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
..+.|+|+.|++.+|.|...+.+...+|+...+.+
T Consensus 655 ~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 655 DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 12457888899999999999999999999988865
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=2.8e-16 Score=167.82 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=126.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 58999999999999988776543222 234468999999999999999999999999999988765321
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHh-hhcCCcccC------CccEEEEEecCC
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTKD------KERVLVLAATNR 950 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~-~ldgl~~k~------~~~VlVIaTTN~ 950 (1103)
...+..++.... ...||||||||+| +...++.+...++.+.. .+-|..... -.++-+|+||++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122334443332 3579999999998 44555565555555433 122222111 146889999999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 951 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 951 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
...|...++.||.....+..++.++-.+|++.-.....+. ++....+||..+.|. ++-..+|++++
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll~rv 225 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLLRRV 225 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHH
Confidence 9999999999999888899999999999998766554443 455578899999884 44444555444
No 63
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.68 E-value=9.9e-17 Score=205.57 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccChh---hHHHHHHHHhcC-----CCCEEEEeeccCCCCccccCCCCC
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND---AYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGG 610 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~---~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~~~~ 610 (1103)
..-+..+|+.+.. .+|+||||||||. |+.+.+ ..+.|...|+.. ..+||||||||++|.
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~--------- 1784 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQK--------- 1784 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCccc---------
Confidence 3447788888877 8999999999999 564322 355666666654 237999999995544
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccch
Q 001309 611 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 688 (1103)
Q Consensus 611 ~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 688 (1103)
||| ||+| ||++++++++|+..+|..|
T Consensus 1785 -------------LDP---------------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1785 -------------VDP---------------------------------------ALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred -------------CCH---------------------------------------hHcCCCCCCeEEEeCCCCchhHHHH
Confidence 444 9999 9999999999999999999
Q ss_pred hHHHHHhhhCCC--CccchhhhhhccCCCCHHHHHHHHhhhhhhccccc
Q 001309 689 ISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 735 (1103)
Q Consensus 689 l~IhT~l~~~~l--~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 735 (1103)
+.|+...+.-.+ .+++++.+|..|.||+||||+.||++|++.|+.+.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 998643333333 34689999999999999999999999999999854
No 64
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.3e-16 Score=177.29 Aligned_cols=220 Identities=16% Similarity=0.289 Sum_probs=170.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|+.++...+.|+.|.+-+...+...+.|.+.|... .+|.|||||||||||+++.|+|+++++.++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw-KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW-KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch-hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 36899999999999999999999999999999887443 4899999999999999999999999999999998765432
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-----hH-HHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-----HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~-----~~-~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
. .++.+...+. ..+||+|.+||.-+.-+..... +. ...-.+.-|++.+||+......--+||+|||.
T Consensus 275 ----~-dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ----S-DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ----H-HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 1 2666654432 3489999999987653322111 11 12245678999999999887667899999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCC--CcHHHHHHHHHH---HHhhhhH
Q 001309 951 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIR 1023 (1103)
Q Consensus 951 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeG--ySg~DL~~L~~~---Aa~~air 1023 (1103)
.+.||||++| |.+.+|++...+.+.-..++..++.... +..-+.++....++ .+++|+...... .+..+++
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk 425 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALK 425 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHH
Confidence 9999999999 9999999999999999999999987633 23345555555554 488888755432 3455566
Q ss_pred HHHH
Q 001309 1024 EILE 1027 (1103)
Q Consensus 1024 eiie 1027 (1103)
++++
T Consensus 426 ~Lv~ 429 (457)
T KOG0743|consen 426 GLVE 429 (457)
T ss_pred HHHH
Confidence 6554
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.66 E-value=3.3e-16 Score=182.64 Aligned_cols=234 Identities=23% Similarity=0.294 Sum_probs=170.2
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 377 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 377 (1103)
+..+++|+++... |..+.-|..+....+++++.. +++ +. ..+.|||+||||| .+.+||||+|++.+++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppGt--GKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCCC--ChHHHHHHHHHHhCCCEEEe
Confidence 4567899998888 888999999988889987753 332 22 2357999999999 69999999999999887776
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 5432211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchh
Q 001309 458 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 537 (1103)
Q Consensus 458 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~ 537 (1103)
+|+|.
T Consensus 204 ~~~g~--------------------------------------------------------------------------- 208 (389)
T PRK03992 204 KFIGE--------------------------------------------------------------------------- 208 (389)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 12221
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEeeccCCCCccc
Q 001309 538 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 604 (1103)
Q Consensus 538 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~ 604 (1103)
....+..+|+.+.. ..|.||||+|+|.++.. ..+.-..+...|..+. ++|+|||++|+++.
T Consensus 209 ~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~--- 282 (389)
T PRK03992 209 GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI--- 282 (389)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh---
Confidence 01124466666655 88999999999996542 1233223333333332 48999999995433
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhh
Q 001309 605 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 682 (1103)
Q Consensus 605 k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 682 (1103)
+| +|++| ||++.+++++|+.
T Consensus 283 -------------------ld---------------------------------------~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 283 -------------------LD---------------------------------------PAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred -------------------CC---------------------------------------HHHcCCccCceEEEECCCCH
Confidence 22 28888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHh
Q 001309 683 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 761 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~ 761 (1103)
..|..|+++|.. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...||+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999964 3344 458899999999999999999999999999887421 1246778887
Q ss_pred hhhhhhh
Q 001309 762 IQSESKS 768 (1103)
Q Consensus 762 a~~eik~ 768 (1103)
+...+.+
T Consensus 368 A~~~~~~ 374 (389)
T PRK03992 368 AIEKVMG 374 (389)
T ss_pred HHHHHhc
Confidence 7666654
No 66
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.1e-16 Score=191.62 Aligned_cols=221 Identities=23% Similarity=0.328 Sum_probs=169.1
Q ss_pred ccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001309 295 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 374 (1103)
Q Consensus 295 i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 374 (1103)
+-+-.++.|+|+++--- |..|.-|.+-+- .||+++. |.+-=.-.-+.+||+||||| -...||||.|-+-|+|+
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPGT--GKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAGVPF 372 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCCC--cHHHHHHHHhcccCCce
Confidence 34467888999999888 999999999876 7999875 54433555678999999999 69999999999999998
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCC
Q 001309 375 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 454 (1103)
Q Consensus 375 L~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 454 (1103)
+-+-.+.+--
T Consensus 373 ~svSGSEFvE---------------------------------------------------------------------- 382 (774)
T KOG0731|consen 373 FSVSGSEFVE---------------------------------------------------------------------- 382 (774)
T ss_pred eeechHHHHH----------------------------------------------------------------------
Confidence 7654322100
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCC
Q 001309 455 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 534 (1103)
Q Consensus 455 drvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~ 534 (1103)
.|+|. + +
T Consensus 383 ---~~~g~-----------------------------~-------------------------------a---------- 389 (774)
T KOG0731|consen 383 ---MFVGV-----------------------------G-------------------------------A---------- 389 (774)
T ss_pred ---Hhccc-----------------------------c-------------------------------h----------
Confidence 11221 0 0
Q ss_pred chhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc----------cC---hhhHHHHHHHHhcCC--CCEEEEeeccCC
Q 001309 535 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN---NDAYGALKSKLENLP--SNVVVIGSHTQL 599 (1103)
Q Consensus 535 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~----------~~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~ 599 (1103)
-.++.||..... ..|.||||+++|. ++ +| .+.++.+--.++.+. +.||||++||++
T Consensus 390 -----srvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 390 -----SRVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRP 460 (774)
T ss_pred -----HHHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCc
Confidence 012366666555 9999999999998 44 22 345555555666663 489999999976
Q ss_pred CCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhh
Q 001309 600 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 677 (1103)
Q Consensus 600 d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~ 677 (1103)
|- +|+ |||| ||+|++.+
T Consensus 461 d~----------------------ld~---------------------------------------allrpGRfdr~i~i 479 (774)
T KOG0731|consen 461 DI----------------------LDP---------------------------------------ALLRPGRFDRQIQI 479 (774)
T ss_pred cc----------------------cCH---------------------------------------HhcCCCccccceec
Confidence 55 444 9999 99999999
Q ss_pred chhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccc
Q 001309 678 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 735 (1103)
Q Consensus 678 ~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 735 (1103)
++||.++|.+|+++|.+-..-..+++++..||.+|.||+||||.-+|++|+..|.++.
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred cCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 9999999999999996522222488899999999999999999999999999998743
No 67
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.65 E-value=3.5e-16 Score=182.39 Aligned_cols=215 Identities=22% Similarity=0.353 Sum_probs=161.2
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 377 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 377 (1103)
+.-+|+|++.--+ |..|.-|..+.-..|++++.. +++ +. ..+.|||.||+|| .+.+||||+|++.++.++-+
T Consensus 138 ~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l~-~pkgvLL~GppGT--GKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 138 EKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--ID-PPRGVLLYGPPGT--GKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCCC--CHHHHHHHHHHhcCCCEEEE
Confidence 4668999998887 999999999998899998763 333 33 4578999999999 69999999999988877665
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
..+.+..
T Consensus 211 ~~s~l~~------------------------------------------------------------------------- 217 (398)
T PTZ00454 211 VGSEFVQ------------------------------------------------------------------------- 217 (398)
T ss_pred ehHHHHH-------------------------------------------------------------------------
Confidence 4211100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchh
Q 001309 458 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 537 (1103)
Q Consensus 458 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~ 537 (1103)
+|+|.
T Consensus 218 k~~ge--------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 KYLGE--------------------------------------------------------------------------- 222 (398)
T ss_pred Hhcch---------------------------------------------------------------------------
Confidence 22221
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhh---HHHHHHHHhcCC--CCEEEEeeccCCCCccc
Q 001309 538 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDA---YGALKSKLENLP--SNVVVIGSHTQLDSRKE 604 (1103)
Q Consensus 538 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~---~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~ 604 (1103)
....+..+|+.+.. .+|.||||||+|.++..+ .+. ...+...++.+. .+|+||++||++|.
T Consensus 223 ~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~--- 296 (398)
T PTZ00454 223 GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT--- 296 (398)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh---
Confidence 11234466766655 899999999999965421 122 223333344432 48999999995444
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhh
Q 001309 605 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 682 (1103)
Q Consensus 605 k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 682 (1103)
+|+ |++| ||++++++++|+.
T Consensus 297 -------------------LDp---------------------------------------AllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 297 -------------------LDP---------------------------------------ALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred -------------------CCH---------------------------------------HHcCCCcccEEEEeCCcCH
Confidence 333 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 683 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
..|..|+++|+. ..++ .++++++++..|.||+|+||+.+|++|...|+.+
T Consensus 319 ~~R~~Il~~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 319 RQKRLIFQTITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999975 3344 6789999999999999999999999999998864
No 68
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=2.9e-15 Score=187.41 Aligned_cols=185 Identities=25% Similarity=0.383 Sum_probs=140.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3677899999999888776641 223589999999999999999999987 6789999
Q ss_pred ecCccc--cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-hHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 868 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 868 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~-~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
++..+. ..+.|+.+..++.+|..+.+..+.||||||||.|++.....+. .... .+ |...+ .+..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~---L~~~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NL---LKPAL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HH---HHHHH------hCCCeEE
Confidence 988876 4688999999999999998888999999999999866432222 1211 12 22222 2356899
Q ss_pred EEecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHcCCCcH
Q 001309 945 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 945 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~-----l~~dvdl~~LA~~TeGySg 1007 (1103)
|++||.. ...|+++.|||. .+.++.|+.+++.+|++.+..... ...+..+..++..+..|.+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 468999999995 799999999999999998776521 1245556677777766643
No 69
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.1e-16 Score=170.87 Aligned_cols=142 Identities=23% Similarity=0.350 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcCC-----CCEEEEeeccCCCCcccc
Q 001309 540 LAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEK 605 (1103)
Q Consensus 540 ~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~---------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~k 605 (1103)
.++.+||.|+.+ +.|.|+||++||. +. +.+++-......|.+|. |-|-||-|||+.++
T Consensus 265 klvRqlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~---- 336 (440)
T KOG0726|consen 265 KLVRELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---- 336 (440)
T ss_pred HHHHHHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----
Confidence 356699999988 9999999999999 44 33556555556666664 59999999998776
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhh
Q 001309 606 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 683 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 683 (1103)
+|| ||.| |.+|.++|++||++
T Consensus 337 ------------------LDP---------------------------------------aLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726|consen 337 ------------------LDP---------------------------------------ALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred ------------------cCH---------------------------------------hhcCCCccccccccCCCchh
Confidence 565 9999 99999999999999
Q ss_pred cccchhHHHHH-hhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHh
Q 001309 684 GQSNIISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 761 (1103)
Q Consensus 684 gR~~Il~IhT~-l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~ 761 (1103)
.++.|+.|||- |. | .+++|++|-....-++||||.++|++|-..|++.+ .+.++..||+.
T Consensus 360 TkkkIf~IHTs~Mt---l~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---------------Rm~vt~~DF~k 421 (440)
T KOG0726|consen 360 TKKKIFQIHTSRMT---LAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---------------RMKVTMEDFKK 421 (440)
T ss_pred hhceeEEEeecccc---hhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH---------------HhhccHHHHHH
Confidence 99999999984 32 3 78999999998999999999999999999888732 34567788877
Q ss_pred hhh
Q 001309 762 IQS 764 (1103)
Q Consensus 762 a~~ 764 (1103)
+..
T Consensus 422 a~e 424 (440)
T KOG0726|consen 422 AKE 424 (440)
T ss_pred HHH
Confidence 643
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.3e-14 Score=163.27 Aligned_cols=198 Identities=21% Similarity=0.249 Sum_probs=136.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 878 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G 878 (1103)
+|++++|+++.++.|...+.....+ ..++.+++|+||||||||+||+++|++++.++..+.++.+.. .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c-
Confidence 6899999999999998877532211 223467999999999999999999999998877766543221 1
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhh--cC-Ccc----cCCccEEEEEecCCC
Q 001309 879 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DG-LRT----KDKERVLVLAATNRP 951 (1103)
Q Consensus 879 ~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~l--dg-l~~----k~~~~VlVIaTTN~p 951 (1103)
..+...+... ..+.||||||+|.+. ...++.+..+++.....+ +. ... ....++.+|++|+.+
T Consensus 70 ---~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 70 ---GDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ---hhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1222222222 246899999999883 222333333333322111 10 000 012347899999999
Q ss_pred CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 952 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 952 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
..+++++++||...+.+..|+.+++.++++..+....+. ++..++.|+..+.|+. +.+.+++..++.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 999999999998888999999999999999988765443 4556788999998876 455667766543
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=9.7e-15 Score=165.22 Aligned_cols=181 Identities=24% Similarity=0.429 Sum_probs=133.6
Q ss_pred CCCcccccCcHHHH---HHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik---~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..++++++|++... ..|.+.+.. ....+++||||||||||+||+.||...+.+|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35789999998886 345555541 23358999999999999999999999999999998643
Q ss_pred cccccccHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec-
Q 001309 874 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 948 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT- 948 (1103)
.+-+.++.+++.|++.. ..||||||||++ +...|.. |+-.+ ++..|++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccC
Confidence 34567899999996543 489999999988 3333332 23222 33678888877
Q ss_pred -CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh--cccC------CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 949 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 949 -N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~--~~l~------~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
|+.+.+.+++++|. +++.+.+.+.++..++++..+.. ..+. ++...+.|+..++|-..+.|.. ++.++
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~-LE~~~ 217 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL-LELAA 217 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH-HHHHH
Confidence 77789999999998 78899999999999999884433 2222 3456778889988876655543 34443
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=2.3e-14 Score=163.56 Aligned_cols=200 Identities=22% Similarity=0.262 Sum_probs=139.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+|++++|+++.++.+...+..... . ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753211 1 235578999999999999999999999999887776554321
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh--hcCCcc-c----CCccEEEEEecCC
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-K----DKERVLVLAATNR 950 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~--ldgl~~-k----~~~~VlVIaTTN~ 950 (1103)
...+..++... ..+.||||||||.+. ...++.+..+++..... ++.-.. . .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12334444432 346899999999882 22233333333322110 111000 0 1134788999999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 951 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 951 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
+..+++.+++||...+.++.|+.+++.+|++.......+. ++..+..|+..+.|+. +.+..+++.+...
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876544 4556888999998865 5566666655433
No 73
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-15 Score=175.42 Aligned_cols=211 Identities=20% Similarity=0.290 Sum_probs=162.0
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 001309 302 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 381 (1103)
Q Consensus 302 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~ 381 (1103)
+|-|+.||-- +..|..|.+++-..+..++.. .+|.+.-+.|||.||+|| -..||+||+|-+.+|.+.-+-.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F---~glr~p~rglLLfGPpgt--GKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF---LGLREPVRGLLLFGPPGT--GKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHhh---hccccccchhheecCCCC--chHHHHHHHHhhhcceEeeccHHH
Confidence 5789999998 899999999999888887763 388888899999999999 699999999999999887665544
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeeeeec
Q 001309 382 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 461 (1103)
Q Consensus 382 ~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g 461 (1103)
|++ ||+|
T Consensus 222 Lts-------------------------------------------------------------------------K~~G 228 (428)
T KOG0740|consen 222 LTS-------------------------------------------------------------------------KYVG 228 (428)
T ss_pred hhh-------------------------------------------------------------------------hccC
Confidence 444 5666
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhhHHH
Q 001309 462 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 541 (1103)
Q Consensus 462 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~k~~ 541 (1103)
. ..-+
T Consensus 229 e---------------------------------------------------------------------------~eK~ 233 (428)
T KOG0740|consen 229 E---------------------------------------------------------------------------SEKL 233 (428)
T ss_pred h---------------------------------------------------------------------------HHHH
Confidence 4 1234
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC----CCCEEEEeeccCCCCccccCCCC
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPG 609 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~~ 609 (1103)
+.+||+|+.. .+|.|+||+|+|.+|+. +.++...|.-.++.. ..+|+||||||
T Consensus 234 vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN------------ 298 (428)
T KOG0740|consen 234 VRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN------------ 298 (428)
T ss_pred HHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC------------
Confidence 5699999988 99999999999999982 222222222222222 34999999999
Q ss_pred CceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccchh
Q 001309 610 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 689 (1103)
Q Consensus 610 ~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il 689 (1103)
+|+.+|+ |.+|||-+-+|+++||..+|..++
T Consensus 299 ------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~~ 329 (428)
T KOG0740|consen 299 ------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLLW 329 (428)
T ss_pred ------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHHH
Confidence 5555553 777777777778888777776554
Q ss_pred HHHHHhhh--CCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 690 SIRSVLSR--NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 690 ~IhT~l~~--~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
+= .|.+ +.+.+.+++.|+..|.||+|.||..+|.+|+..-+.
T Consensus 330 ~~--ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 330 KQ--LLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred HH--HHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 32 2333 456888999999999999999999999999876554
No 74
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1e-15 Score=162.67 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCCccccCC
Q 001309 541 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 607 (1103)
Q Consensus 541 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~ 607 (1103)
.+.+||=++.+ +.|.|||+++||.+=+ +..+.-....+.|.+|.| ++-||-|||+.|-
T Consensus 228 mvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi------ 298 (404)
T KOG0728|consen 228 MVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI------ 298 (404)
T ss_pred HHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc------
Confidence 45588888888 9999999999998422 345555556666777766 9999999998665
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcc
Q 001309 608 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 685 (1103)
Q Consensus 608 ~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 685 (1103)
+|| ||+| |.+|.++||-|++++|
T Consensus 299 ----------------ld~---------------------------------------allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 299 ----------------LDP---------------------------------------ALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred ----------------ccH---------------------------------------hhcCCCcccccccCCCCCHHHH
Confidence 554 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhhh
Q 001309 686 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 764 (1103)
Q Consensus 686 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~~ 764 (1103)
.+||+||++ |. -.-..+|..+|++..|-+||++.++|++|--+|+... .+.++..||+.+..
T Consensus 324 ~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm~alrer---------------rvhvtqedfemav~ 386 (404)
T KOG0728|consen 324 LDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER---------------RVHVTQEDFEMAVA 386 (404)
T ss_pred HHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh---------------hccccHHHHHHHHH
Confidence 999999986 32 2256789999999999999999999999999998732 23455667766643
No 75
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.59 E-value=3.2e-15 Score=175.65 Aligned_cols=230 Identities=22% Similarity=0.260 Sum_probs=164.9
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 301 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 301 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
-.+||++.--. +..+..|.++.-..|.|+++. .++ +. ....+||+||+|| ...+||||+|+.+++.++-++.
T Consensus 178 p~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g--i~-~p~gVLL~GPPGT--GKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 178 PLESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG--IK-PPKGVILYGPPGT--GKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC--CC-CCcEEEEECCCCC--CHHHHHHHHHHhhCCCEEEEec
Confidence 34667766555 888888999988889998763 343 32 3457999999999 6999999999998877665543
Q ss_pred cCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeeee
Q 001309 380 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 459 (1103)
Q Consensus 380 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~ 459 (1103)
+.+.+ +|
T Consensus 251 seL~~-------------------------------------------------------------------------k~ 257 (438)
T PTZ00361 251 SELIQ-------------------------------------------------------------------------KY 257 (438)
T ss_pred chhhh-------------------------------------------------------------------------hh
Confidence 22211 12
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhhH
Q 001309 460 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 539 (1103)
Q Consensus 460 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~k 539 (1103)
+|. ..
T Consensus 258 ~Ge---------------------------------------------------------------------------~~ 262 (438)
T PTZ00361 258 LGD---------------------------------------------------------------------------GP 262 (438)
T ss_pred cch---------------------------------------------------------------------------HH
Confidence 211 11
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC-----CCCEEEEeeccCCCCccccC
Q 001309 540 LAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKS 606 (1103)
Q Consensus 540 ~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~ 606 (1103)
..+..+|+.+.. ..|.||||+|+|.++.. ..+....+...|..+ .++|.||++||++|.
T Consensus 263 ~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~----- 334 (438)
T PTZ00361 263 KLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES----- 334 (438)
T ss_pred HHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH-----
Confidence 234566776655 78999999999997642 123333333344333 348999999996444
Q ss_pred CCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhc
Q 001309 607 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 684 (1103)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~g 684 (1103)
+|+ |++| ||++++++++||..+
T Consensus 335 -----------------LDp---------------------------------------aLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 335 -----------------LDP---------------------------------------ALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred -----------------hhH---------------------------------------HhccCCeeEEEEEeCCCCHHH
Confidence 332 8887 999999999999999
Q ss_pred ccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhhh
Q 001309 685 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 763 (1103)
Q Consensus 685 R~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a~ 763 (1103)
|..|+++|+. ...+ .+++++.++..+.||+|+||+.+|++|...|+++.. ..++..||..|.
T Consensus 359 R~~Il~~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r---------------~~Vt~~D~~~A~ 421 (438)
T PTZ00361 359 KRRIFEIHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR---------------MKVTQADFRKAK 421 (438)
T ss_pred HHHHHHHHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC---------------CccCHHHHHHHH
Confidence 9999999975 2234 678999999999999999999999999999987431 134566776665
Q ss_pred hhh
Q 001309 764 SES 766 (1103)
Q Consensus 764 ~ei 766 (1103)
.++
T Consensus 422 ~~v 424 (438)
T PTZ00361 422 EKV 424 (438)
T ss_pred HHH
Confidence 444
No 76
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.59 E-value=2.4e-15 Score=180.63 Aligned_cols=216 Identities=25% Similarity=0.374 Sum_probs=156.1
Q ss_pred cCCccccccccccccccchhHHHHHHHhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001309 296 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 374 (1103)
Q Consensus 296 ~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 374 (1103)
...+..+++|++++-+ ++.|.-|..... .|++++ |.+++. ...+.|||.||||| -+.+||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g~---~~~~giLL~GppGt--GKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcCC---CCCCcEEEECCCCC--CHHHHHHHHHHHcCCCe
Confidence 3455779999999877 999998887766 477765 333432 33467999999999 69999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCC
Q 001309 375 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 454 (1103)
Q Consensus 375 L~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 454 (1103)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6654322110
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCC
Q 001309 455 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 534 (1103)
Q Consensus 455 drvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~ 534 (1103)
+|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 01110
Q ss_pred chhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCC
Q 001309 535 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDS 601 (1103)
Q Consensus 535 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~ 601 (1103)
..-.+..+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. ++|+|||+||+++.
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 00123456666554 78999999999996542 1 123334444445443 37999999995443
Q ss_pred ccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhch
Q 001309 602 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 679 (1103)
Q Consensus 602 ~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~L 679 (1103)
+|+ |++| ||++++++++
T Consensus 206 ----------------------ld~---------------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 206 ----------------------LDP---------------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred ----------------------cCH---------------------------------------HHhcCCcceEEEEcCC
Confidence 333 8888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 680 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 680 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
|+...|.+|+++|.. ..++ .+.++..+|..+.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHh--cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999964 2233 577899999999999999999999999887655
No 77
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=2.6e-14 Score=179.95 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=139.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 873 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~-------- 873 (1103)
+++|++++++.+.+++.....+ .. .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5889999999999977643221 11 1224799999999999999999999999999999875432
Q ss_pred -cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh-----HHhhhcCCcccCCccEEEEEe
Q 001309 874 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 874 -s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~-----LL~~ldgl~~k~~~~VlVIaT 947 (1103)
..|.|.....+.+.|..+....| ||||||||.+...... .....+..++.. |+....+... +-.++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~~-d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVPF-DLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCcee-ccCCEEEEEe
Confidence 24566666677788888766555 8999999999643221 112222222221 1111111111 1257899999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-----cccC------CcccHHHHHHH-cCCCcHHHHHHHHH
Q 001309 948 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIANM-ADGYSGSDLKNLCV 1015 (1103)
Q Consensus 948 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~-----~~l~------~dvdl~~LA~~-TeGySg~DL~~L~~ 1015 (1103)
||..+.+++++++|| .++.++.|+.+++.+|++.++.. ..+. ++..+..|+.. +..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 57899999999999999887632 1221 22234444432 22334456666655
Q ss_pred HHHhhhhHHH
Q 001309 1016 TAAHCPIREI 1025 (1103)
Q Consensus 1016 ~Aa~~airei 1025 (1103)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 78
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.58 E-value=3.3e-14 Score=171.89 Aligned_cols=200 Identities=23% Similarity=0.295 Sum_probs=133.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 866 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~ 866 (1103)
..+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++++ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 46899999999999988865431 123589999999999999999998653 368999
Q ss_pred EecCcc-------ccccccccHH----------------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHH
Q 001309 867 ISMSSI-------TSKWFGEGEK----------------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 923 (1103)
Q Consensus 867 v~~s~L-------~s~~~G~~e~----------------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~v 923 (1103)
++|... ....++.... .....+.. ...++||||||+.| +...+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 00112222 23489999999998 44455555555
Q ss_pred HHhHHhhhcC-----C------------cccCCccEEEE-EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001309 924 KNEFMVNWDG-----L------------RTKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 924 l~~LL~~ldg-----l------------~~k~~~~VlVI-aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
+++....+.+ . ...-+..+++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5543322211 0 00012334555 55678999999999998 5678888899999999999998
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001309 986 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 986 ~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
+..+. ++..++.|+..+. +++++.++++.|+..+
T Consensus 278 k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 278 KIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIA 312 (531)
T ss_pred HcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence 76543 4445666666553 7899999998887654
No 79
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=4.3e-14 Score=175.92 Aligned_cols=197 Identities=19% Similarity=0.299 Sum_probs=142.3
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 868 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~ 868 (1103)
.++.++|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 466789999999998887652 123578999999999999999999875 45566666
Q ss_pred cCccc--cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 869 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 869 ~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
...+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888899999999998888999999999999877643332222223333332 236799999
Q ss_pred ecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCC-----cccHHHHHHHcCCC-----cHHHHH
Q 001309 947 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-----DVDLEGIANMADGY-----SGSDLK 1011 (1103)
Q Consensus 947 TTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~-----dvdl~~LA~~TeGy-----Sg~DL~ 1011 (1103)
+|+.++ ..|+++.|||. .|.++.|+.+++.+|++.+........ +..+..++..+..| .+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 67999999995 799999999999999998876643332 33344444444433 445666
Q ss_pred HHHHHHHh
Q 001309 1012 NLCVTAAH 1019 (1103)
Q Consensus 1012 ~L~~~Aa~ 1019 (1103)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 67766653
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=166.38 Aligned_cols=185 Identities=21% Similarity=0.245 Sum_probs=134.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++|+|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 45899999999999999998763 233467899999999999999999999976
Q ss_pred ---------------cEEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHH
Q 001309 863 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 923 (1103)
Q Consensus 863 ---------------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~v 923 (1103)
.++.++... ...-..++.+.+.+.. ....|+||||+|.|. ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 222333221 1122345555554432 234799999999982 223
Q ss_pred HHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 001309 924 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1002 (1103)
Q Consensus 924 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T 1002 (1103)
.|.|+..++. .+.++++|++|+.+..|.+++++|+ ..+.|..++.++..+.++.++..+.+. ++..+..|+..+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4556666554 3467889999999999999999999 789999999999999999888876654 334467788888
Q ss_pred CCCcHHHHHHHHHHHH
Q 001309 1003 DGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 1003 eGySg~DL~~L~~~Aa 1018 (1103)
+|.. ++..+++..+.
T Consensus 216 ~Gs~-RdALsLLdQai 230 (700)
T PRK12323 216 QGSM-RDALSLTDQAI 230 (700)
T ss_pred CCCH-HHHHHHHHHHH
Confidence 8744 45555555443
No 81
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.2e-15 Score=176.45 Aligned_cols=122 Identities=20% Similarity=0.386 Sum_probs=101.3
Q ss_pred hccC-CCCeEEEEcChhhhhcc---------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCCCceeec
Q 001309 551 NESK-SSPLIVFVKDIEKSLTG---------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTK 615 (1103)
Q Consensus 551 ~e~~-~~p~Ilf~~d~e~~l~~---------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~ 615 (1103)
.+|| +.|+||||+++|. +.+ | .+..+.+...++.+. .+||||+||||+|.
T Consensus 236 ~qAkk~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV-------------- 300 (596)
T COG0465 236 EQAKKNAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV-------------- 300 (596)
T ss_pred HHhhccCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc--------------
Confidence 3344 9999999999999 653 2 245666666666665 38999999997655
Q ss_pred cCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchhHHHH
Q 001309 616 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRS 693 (1103)
Q Consensus 616 ~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT 693 (1103)
+|+ ||+| ||+||+-.++||.+||.+|+++|.
T Consensus 301 --------lD~---------------------------------------ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 301 --------LDP---------------------------------------ALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred --------chH---------------------------------------hhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 333 9999 999999999999999999999994
Q ss_pred HhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccccc
Q 001309 694 VLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 736 (1103)
Q Consensus 694 ~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~ 736 (1103)
+.-.+ +++++..+|..|.||+||+++.++.+|+++|.++..
T Consensus 334 --~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~ 375 (596)
T COG0465 334 --KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK 375 (596)
T ss_pred --hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC
Confidence 44444 889999999999999999999999999999998654
No 82
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.3e-15 Score=156.55 Aligned_cols=126 Identities=21% Similarity=0.329 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCCccccC
Q 001309 541 AINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKS 606 (1103)
Q Consensus 541 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~---------~~~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~ 606 (1103)
.+.+||+++.+ ...+||||++||. +. +.++.-....+.+.+| +||+-|+-|||++|.
T Consensus 258 mvrelf~mart---kkaciiffdeida-iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt----- 328 (435)
T KOG0729|consen 258 MVRELFEMART---KKACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT----- 328 (435)
T ss_pred HHHHHHHHhcc---cceEEEEeecccc-ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC-----
Confidence 45699999888 9999999999999 44 3455544444444444 569999999996554
Q ss_pred CCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhc
Q 001309 607 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 684 (1103)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~g 684 (1103)
+++ ||+| |++|.++|.|||++|
T Consensus 329 -------------------------ldp-------------------------------allrpgrldrkvef~lpdleg 352 (435)
T KOG0729|consen 329 -------------------------LDP-------------------------------ALLRPGRLDRKVEFGLPDLEG 352 (435)
T ss_pred -------------------------cCH-------------------------------hhcCCcccccceeccCCcccc
Confidence 443 9999 999999999999999
Q ss_pred ccchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 685 QSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 685 R~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
|.+|++||++ |.-. -+...+-||.++.+-+||+|+.+|++|--+|+.
T Consensus 353 rt~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 353 RTHIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred cceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 9999999987 4311 344566799999999999999999999999886
No 83
>CHL00176 ftsH cell division protein; Validated
Probab=99.54 E-value=1.7e-14 Score=176.62 Aligned_cols=219 Identities=21% Similarity=0.321 Sum_probs=156.4
Q ss_pred ccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001309 295 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 374 (1103)
Q Consensus 295 i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 374 (1103)
+....+..++|+++.-+ +..|.-|.+... .|++++. |..-=....+.|||.||||| -+.+||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpGT--GKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCCC--CHHHHHHHHHHHhCCCe
Confidence 33556788999998888 888888888765 3777654 33322344577999999999 69999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCC
Q 001309 375 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 454 (1103)
Q Consensus 375 L~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 454 (1103)
+-++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6655322110
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCC
Q 001309 455 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 534 (1103)
Q Consensus 455 drvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~ 534 (1103)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChh---hHHHHHHHHhcCC--CCEEEEeeccCCCC
Q 001309 535 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNND---AYGALKSKLENLP--SNVVVIGSHTQLDS 601 (1103)
Q Consensus 535 ~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~---~~~~l~~~L~~l~--g~vvvIgs~~~~d~ 601 (1103)
..-.+..+|+.+.. ..|.||||||+|.+.. ++.+ ..+.|...++.+. .+|+|||+||+++.
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 00112355555544 8899999999999642 1222 2333333344433 38999999995433
Q ss_pred ccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhch
Q 001309 602 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 679 (1103)
Q Consensus 602 ~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~L 679 (1103)
+|+ |++| ||++++.+++
T Consensus 334 ----------------------LD~---------------------------------------ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 334 ----------------------LDA---------------------------------------ALLRPGRFDRQITVSL 352 (638)
T ss_pred ----------------------hhh---------------------------------------hhhccccCceEEEECC
Confidence 232 8888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 680 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 680 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
|+.++|..|++.|.+. ..+ ++.++..+|..|.||+|+||+.+|++|+..+..+
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999543 333 6789999999999999999999999998887653
No 84
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=2.1e-13 Score=148.51 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=141.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
...|++++|++++|+.|.-++.....+. ...-++||+||||.|||+||..||+++|.++...+.+.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 3579999999999999998887644432 344689999999999999999999999999988887765321
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc-CCccc------CCccEEEEEecC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTK------DKERVLVLAATN 949 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld-gl~~k------~~~~VlVIaTTN 949 (1103)
..+..++... ....|+||||||+| ++...+.+.-.++.|...+- |-.+. +-.++-+|++|.
T Consensus 92 -----gDlaaiLt~L--e~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 92 -----GDLAAILTNL--EEGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -----hhHHHHHhcC--CcCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 1233333332 23479999999998 44455555555555543221 11111 125688999999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 950 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 950 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
+...|...++.||+....+..++.++..+|+........+. .+....++|+++.|...
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999887766554 45557889999988543
No 85
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.7e-14 Score=154.16 Aligned_cols=127 Identities=21% Similarity=0.315 Sum_probs=104.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCCccccCCC
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHP 608 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~~ 608 (1103)
+...|.++.+ ..|.||||+++|.+=. |..+.-......|.+|.| .|-||+|||+.|-
T Consensus 253 VRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi------- 322 (424)
T KOG0652|consen 253 VRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI------- 322 (424)
T ss_pred HHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc-------
Confidence 3455666666 9999999999998422 455665555566666654 8999999998665
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhccc
Q 001309 609 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 686 (1103)
Q Consensus 609 ~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 686 (1103)
+|| ||+| |++|.++||+|.+.+|.
T Consensus 323 ---------------LDP---------------------------------------ALlRSGRLDRKIEfP~Pne~aRa 348 (424)
T KOG0652|consen 323 ---------------LDP---------------------------------------ALLRSGRLDRKIEFPHPNEEARA 348 (424)
T ss_pred ---------------cCH---------------------------------------HHhhcccccccccCCCCChHHHH
Confidence 555 9999 99999999999999999
Q ss_pred chhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 687 NIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 687 ~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
.|++||.+ |.- -++++.++||..|..|.||..+++|-+|--.|++|
T Consensus 349 rIlQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 349 RILQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred HHHHHhhhhcCC--CCCCCHHHHhhcccccCchhheeeehhhhHHHHhc
Confidence 99999986 432 27899999999999999999999999999888875
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2e-13 Score=160.94 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=132.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+...|...+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 45899999999999999888763 2234569999999999999999999998763
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ..+-..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 23333211 111234455444443 2235699999999882 22345555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++.++++|++|+.++.+.+++++|+ .++.|..++.++-.+.++.++..+++. ++..+..|+..++|...
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 55543 3467899999999999999999999 578899999988889999988877654 56678889999888654
Q ss_pred HHHHHHHHH
Q 001309 1008 SDLKNLCVT 1016 (1103)
Q Consensus 1008 ~DL~~L~~~ 1016 (1103)
+..++++.
T Consensus 218 -dAL~lLeq 225 (484)
T PRK14956 218 -DMLSFMEQ 225 (484)
T ss_pred -HHHHHHHH
Confidence 44444443
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=3e-13 Score=171.10 Aligned_cols=185 Identities=19% Similarity=0.334 Sum_probs=138.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..+++++|+++....+.+.+.. +...+++|+||||+|||++|+.+|+.+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3678999999987777665541 223579999999999999999999886 3557788
Q ss_pred ecCcccc--ccccccHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 868 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 868 ~~s~L~s--~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
+...+.. .+.|+.+..++.+|..++.. .+.||||||||.|.+.+...+.+... +.|.-.+ .+..+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEE
Confidence 8777653 57788889999999998754 57899999999998765433333221 1122111 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcCCCcH
Q 001309 945 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 945 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~----l-~~dvdl~~LA~~TeGySg 1007 (1103)
|+||+.. ..+|+++.||| ..|.++.|+.+++.+||+.+..... + ..+..+..++..+.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999763 46899999999 5899999999999999877665422 1 256678889999988843
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.5e-13 Score=165.32 Aligned_cols=185 Identities=21% Similarity=0.231 Sum_probs=133.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 45899999999999999998752 2334668999999999999999999998652
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ...-..++.+++.+.. ....||||||+|.|. . ...+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----~-------~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----N-------HAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----H-------HHHHHHH
Confidence 33333221 1122345566655432 234799999999982 1 2234444
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..|+. .+.++.+|++||.++.|.+++++|+ ..+.|..++.++..++|+.++..+++. ++..+..|++.++|...
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44443 2357899999999999999999999 789999999999999999998887654 56668889999988655
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
.. .+++..+.
T Consensus 216 dA-LsLLdQAi 225 (830)
T PRK07003 216 DA-LSLTDQAI 225 (830)
T ss_pred HH-HHHHHHHH
Confidence 44 44444433
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=8.6e-13 Score=167.25 Aligned_cols=184 Identities=22% Similarity=0.352 Sum_probs=140.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 868 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~ 868 (1103)
.++.++|.++..+.+.+.+.. +..+++||+||||||||++|+++|... +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 577899999999999887652 234689999999999999999999886 47899999
Q ss_pred cCccc--cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 869 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 869 ~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
+..+. ..|.|+.+..++.+|..+....+.||||||||.|++.....+..... .++.. .+ .+..+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp---~l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKP---AL------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHH---HH------hCCCcEEEE
Confidence 88765 45778889999999999988888999999999998765433322111 12211 11 236689999
Q ss_pred ecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh----ccc-CCcccHHHHHHHcCCCcH
Q 001309 947 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 947 TTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~----~~l-~~dvdl~~LA~~TeGySg 1007 (1103)
+|+..+ ..++++.+||. .+.++.|+.++...|++.+... ..+ .++..+..++..+.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 998753 57899999995 6789999999999999876543 122 355667888888888754
No 90
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.6e-13 Score=164.30 Aligned_cols=190 Identities=22% Similarity=0.208 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EEe-
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NIS- 868 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi-------~v~- 868 (1103)
..+|++|+|++.+++.|+..+.. .+.++.+||+||||||||++|+++|+.+++.-. .|+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 36899999999999999987752 233456799999999999999999999976411 010
Q ss_pred cCccccc------cc----cccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 869 MSSITSK------WF----GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 869 ~s~L~s~------~~----G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
|-.+... .+ ...-..++.+...+.. ....|+||||+|.| + ....+.|+..++.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHHHHHhc-
Confidence 0000000 00 0112345555544432 23469999999998 2 2344555555544
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 001309 935 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
++..+++|++|+.+..|.+.+++|+ .++.|..++.++..++|+..+..+.+. ++..+..|+..++|.. +++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~-R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM-RDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHH
Confidence 3456788888888889999999998 789999999999999999988776543 4456788888888754 455555
Q ss_pred HHHH
Q 001309 1014 CVTA 1017 (1103)
Q Consensus 1014 ~~~A 1017 (1103)
|..+
T Consensus 221 LdQa 224 (944)
T PRK14949 221 TDQA 224 (944)
T ss_pred HHHH
Confidence 5543
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.48 E-value=1e-13 Score=160.51 Aligned_cols=127 Identities=24% Similarity=0.387 Sum_probs=94.3
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Chh---hHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCC
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHP 608 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~---~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~k~~~ 608 (1103)
+..+|+.+.. ..|.||||||+|.+... ..+ ....+-..++.+ .++|+||+++|+++.
T Consensus 204 i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~------- 273 (364)
T TIGR01242 204 VREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI------- 273 (364)
T ss_pred HHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh-------
Confidence 3455555544 78999999999996542 111 222233334444 358999999995333
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhccc
Q 001309 609 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 686 (1103)
Q Consensus 609 ~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 686 (1103)
+|+ +++| ||++.+++++|+...|.
T Consensus 274 ---------------ld~---------------------------------------al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 274 ---------------LDP---------------------------------------ALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred ---------------CCh---------------------------------------hhcCcccCceEEEeCCcCHHHHH
Confidence 222 7776 89999999999999999
Q ss_pred chhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 687 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 687 ~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
+|+++|+. ...+ .+.+++.|+..|.||+|+||+.+|++|..+|+.+
T Consensus 300 ~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 300 EILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999963 3334 4578999999999999999999999999999874
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.2e-12 Score=155.85 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
+.+|++++|++.+++.|...+.. .+.++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 45899999999999998887653 234467999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
.++.++++. ..+-..++.+...+... ...||||||+|.|. ....+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 345554432 11223455555554422 34699999999882 11233444
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..+..|+..+.|-..
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44443 2345777777777789999999999 589999999999999999988775543 55667888888877544
Q ss_pred HHHHHHHHH
Q 001309 1008 SDLKNLCVT 1016 (1103)
Q Consensus 1008 ~DL~~L~~~ 1016 (1103)
. +.++++.
T Consensus 214 ~-aln~Le~ 221 (472)
T PRK14962 214 D-ALTMLEQ 221 (472)
T ss_pred H-HHHHHHH
Confidence 3 3344443
No 93
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-13 Score=146.85 Aligned_cols=216 Identities=26% Similarity=0.348 Sum_probs=159.8
Q ss_pred CCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001309 297 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 376 (1103)
Q Consensus 297 ~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~ 376 (1103)
+-++-+||+...--. +-.|+-..+|+-..|-|.++ |-.-=-..-+.+||.||||| ...|||||.||+-.|.++=
T Consensus 146 ~~ekpdvsy~diggl--d~qkqeireavelplt~~~l--y~qigidpprgvllygppg~--gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGL--DVQKQEIREAVELPLTHADL--YKQIGIDPPRGVLLYGPPGT--GKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred CCCCCCccccccccc--hhhHHHHHHHHhccchHHHH--HHHhCCCCCcceEEeCCCCC--cHHHHHHHHhhccchheee
Confidence 345667777776666 78899999999999999988 43311233578999999999 6999999999999887654
Q ss_pred EeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCe
Q 001309 377 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 456 (1103)
Q Consensus 377 lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 456 (1103)
+-.+. .
T Consensus 220 vvgse--------------------------------------------------------------------------f 225 (408)
T KOG0727|consen 220 VVGSE--------------------------------------------------------------------------F 225 (408)
T ss_pred eccHH--------------------------------------------------------------------------H
Confidence 43210 0
Q ss_pred e-eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCc
Q 001309 457 V-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 535 (1103)
Q Consensus 457 v-k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~ 535 (1103)
| ||.|.. |
T Consensus 226 vqkylgeg------------p----------------------------------------------------------- 234 (408)
T KOG0727|consen 226 VQKYLGEG------------P----------------------------------------------------------- 234 (408)
T ss_pred HHHHhccC------------c-----------------------------------------------------------
Confidence 1 566541 0
Q ss_pred hhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-------c-ChhhHHHHHHHHhcCCC-----CEEEEeeccCCCCc
Q 001309 536 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-------G-NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSR 602 (1103)
Q Consensus 536 ~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~-------~-~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~ 602 (1103)
..+..+|.++.+ ..|.||||++||.+-. | ..+.-..+-+.|.++.| ||-||.|||+.|.
T Consensus 235 ----rmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt- 306 (408)
T KOG0727|consen 235 ----RMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT- 306 (408)
T ss_pred ----HHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc-
Confidence 122356666666 9999999999999543 1 34454555666666655 9999999998776
Q ss_pred cccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchh
Q 001309 603 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 680 (1103)
Q Consensus 603 k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lp 680 (1103)
+|| |||| |++|.++||||
T Consensus 307 ---------------------ldp---------------------------------------allrpgrldrkiefplp 326 (408)
T KOG0727|consen 307 ---------------------LDP---------------------------------------ALLRPGRLDRKIEFPLP 326 (408)
T ss_pred ---------------------cCH---------------------------------------hhcCCccccccccCCCC
Confidence 555 9999 99999999999
Q ss_pred hhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 681 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 681 d~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
|..-++=++.--| ..-.+ +++||+.+.....-.+||+|.++|.+|-.+|..
T Consensus 327 drrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 327 DRRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred chhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 9664444443322 33344 789999999999999999999999999988876
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=8.7e-13 Score=161.01 Aligned_cols=184 Identities=23% Similarity=0.280 Sum_probs=132.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+-++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 36899999999999999988763 2234568999999999999999999998763
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ...-..++.+...+.. ....|+||||+|.| + ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----s-------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----S-------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----C-------HHHHHHHH
Confidence 23333221 0122335555444432 23469999999988 2 22345555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+++|.+|+.+..|.+++++|+ ..+.|..++.++-...++..+..+.+. ++..+..|+..++|..+
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55544 3466888888888999999999997 789999999999999999988776654 44567788888888555
Q ss_pred HHHHHHHHHH
Q 001309 1008 SDLKNLCVTA 1017 (1103)
Q Consensus 1008 ~DL~~L~~~A 1017 (1103)
+..+++..|
T Consensus 216 -~Al~lldqa 224 (647)
T PRK07994 216 -DALSLTDQA 224 (647)
T ss_pred -HHHHHHHHH
Confidence 444455444
No 95
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.47 E-value=1.3e-13 Score=170.28 Aligned_cols=125 Identities=17% Similarity=0.325 Sum_probs=96.7
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCCC--CEEEEeeccCCCCccccCCCCC
Q 001309 544 ELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGG 610 (1103)
Q Consensus 544 ~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~g--~vvvIgs~~~~d~~k~k~~~~~ 610 (1103)
.+|+.+.. ..|.||||||+|.+..+ + .+..+.+-..++.+.+ .|||||+||+++.
T Consensus 235 ~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~--------- 302 (644)
T PRK10733 235 DMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV--------- 302 (644)
T ss_pred HHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh---------
Confidence 44554433 78999999999996431 1 1234444444555543 7999999995443
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccch
Q 001309 611 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 688 (1103)
Q Consensus 611 ~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 688 (1103)
+|+ |++| ||++++++++||..+|..|
T Consensus 303 ---------------------lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~~I 330 (644)
T PRK10733 303 ---------------------LDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQI 330 (644)
T ss_pred ---------------------cCH-------------------------------HHhCCcccceEEEcCCCCHHHHHHH
Confidence 333 8988 9999999999999999999
Q ss_pred hHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 689 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 689 l~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
++.|. ...++ .+.++..||..|.||+|+||+.+|++|+..|.+.
T Consensus 331 l~~~~--~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 331 LKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHh--hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99995 44445 6788999999999999999999999999998863
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.7e-13 Score=158.91 Aligned_cols=185 Identities=23% Similarity=0.246 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999988762 234568999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
.++.++.+.- ..-..++.+...+.. .+..|+||||+|.|- . ...+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----~-------~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----T-------HSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----H-------HHHHHHH
Confidence 2344443211 122345555554432 234699999999882 1 1234455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. .+..+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 45544 2355777888888888989999999 688999999999999999999887654 55667888888877 55
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 56556555443
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.47 E-value=1.1e-12 Score=145.83 Aligned_cols=178 Identities=25% Similarity=0.455 Sum_probs=125.8
Q ss_pred CCCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecC
Q 001309 797 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 870 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~---L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---fi~v~~s 870 (1103)
..+++|++|++.+..+ |+.++. + ...+.++|+||||||||+||+.|+.....+ |+.+++.
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie----------q----~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE----------Q----NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH----------c----CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 3577788888776543 333333 1 233589999999999999999999988655 7777654
Q ss_pred ccccccccccHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 871 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
. ...+.++.+|+.+++. ...|||||||+++ +..+ ...|+-.+ +...|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQ-------QD~fLP~V------E~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQ-------QDTFLPHV------ENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhh-------hhccccee------ccCceEEE
Confidence 3 2345789999998754 3589999999987 2111 12333222 34678889
Q ss_pred Eec--CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh----c----cc------CCcccHHHHHHHcCCCcHHH
Q 001309 946 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----EL------ASDVDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 946 aTT--N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~----~----~l------~~dvdl~~LA~~TeGySg~D 1009 (1103)
++| |+.+.|+.++++|+ +++.+.....+.-..|+..-+.. . .+ .++-.++.++..++|-....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 887 77789999999999 67888888888888888875541 1 11 12344788999999988777
Q ss_pred HHHHH
Q 001309 1010 LKNLC 1014 (1103)
Q Consensus 1010 L~~L~ 1014 (1103)
|..|-
T Consensus 334 LN~Le 338 (554)
T KOG2028|consen 334 LNALE 338 (554)
T ss_pred HHHHH
Confidence 66553
No 98
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=4.8e-13 Score=169.69 Aligned_cols=182 Identities=23% Similarity=0.375 Sum_probs=134.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 868 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~ 868 (1103)
.+++++|.+.....+.+.+.. +...+++|+||||+|||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 577899999987777776542 223579999999999999999999987 67889998
Q ss_pred cCccc--cccccccHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 869 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 869 ~s~L~--s~~~G~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
+..+. .++.|+.+..++.+|..+.+ ..+.||||||+|.|.+.....+.....+ + |...+ .+..+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~-~---lkp~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN-M---LKPAL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH-H---hcchh------hcCCCeEE
Confidence 88765 45778889999999988654 4689999999999987654433322221 1 11111 23679999
Q ss_pred EecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCC
Q 001309 946 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1005 (1103)
Q Consensus 946 aTTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-----~dvdl~~LA~~TeGy 1005 (1103)
++|+..+ .+|+++.|||+ .|.+..|+.+++..|++.+....... .+..+...+..+..|
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 9998765 58999999996 58899999999999999887653221 333444444555544
No 99
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.46 E-value=2.1e-12 Score=152.00 Aligned_cols=181 Identities=24% Similarity=0.421 Sum_probs=127.3
Q ss_pred CCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 798 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~---L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+|++++|++.+... |.+.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998666 7776642 123489999999999999999999999999999987532
Q ss_pred ccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec--
Q 001309 875 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 948 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT-- 948 (1103)
....++.++..+.. ....||||||+|.+. ...+ +.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCCC
Confidence 22345556665532 246899999999882 1112 223333322 346666654
Q ss_pred CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc--cc--CCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 949 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 949 N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~--~l--~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
|....+++++++|+ ..+.+..++.++...+++..+... .+ .++..++.++..+.| ..+.+.++++.++.
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44568999999999 788999999999999999887652 11 234556778888865 44555666666543
No 100
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=151.12 Aligned_cols=185 Identities=21% Similarity=0.256 Sum_probs=130.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
+.+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999887752 2334678999999999999999999998642
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ...-..++.+...+... ...|++|||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 22222110 01223455665554322 23699999999882 11223444
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+.+|.+|+.++.+.+++.+|+ ..+.+.+|+.++..++++..++..+. .++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2345777777888888999999998 67899999999999999998888664 355667888888877 55
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
+++.++++.++
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 56666665553
No 101
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=7e-13 Score=153.29 Aligned_cols=179 Identities=24% Similarity=0.370 Sum_probs=128.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-ccccc-c
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFG-E 879 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~-s~~~G-~ 879 (1103)
-|+|++++++.+..++.....+..+....+-..+++++||+||||||||++|+++|..++.+|+.+++..+. ..|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999999888775444332221111123458999999999999999999999999999999998776 36777 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 001309 880 GEKYVKAVFSLAS------------------------------------------------------------------- 892 (1103)
Q Consensus 880 ~e~~i~~lF~~A~------------------------------------------------------------------- 892 (1103)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666665550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 001309 893 ------------------------------------------------------------------------KIAPSVVF 900 (1103)
Q Consensus 893 ------------------------------------------------------------------------~~~PsILf 900 (1103)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12457999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc------cCCccEEEEEec----CCCCCCcHHHHhccccccccCC
Q 001309 901 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 901 IDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
|||||.++.+..+.+......-+.+.|+..++|-.. -+-.++++||+. ..|.+|-|.|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999986542211111122355666666666321 123678999886 3577788999999999999999
Q ss_pred CCHHHHHHHH
Q 001309 971 PDAPNREKII 980 (1103)
Q Consensus 971 Pd~eeR~eIL 980 (1103)
++.++-..||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999988887
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.3e-12 Score=156.99 Aligned_cols=185 Identities=17% Similarity=0.177 Sum_probs=133.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 45899999999999999998863 2344578999999999999999999999653
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++.+. ...-..++.+...+.. .+..|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44444321 1122345555554432 223699999999982 12234455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++-.+.++.++.++++. ++..+..++..+.| +.
T Consensus 141 k~LEe----pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEE----PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhc----cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 55544 2356778888888888999999998 678899999999888899888887654 45567788888876 56
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
+++.+++..+.
T Consensus 215 R~al~lLdq~i 225 (509)
T PRK14958 215 RDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHH
Confidence 67777776554
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.45 E-value=1.5e-12 Score=165.70 Aligned_cols=185 Identities=21% Similarity=0.360 Sum_probs=138.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..++.++|.+.....+.+.+.. +...+++|+||||+|||++|+++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3577899999987777776641 233578999999999999999999886 6778888
Q ss_pred ecCccc--cccccccHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 868 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 868 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
+...+. ..+.|+.+..++.+|..+.+. .+.||||||||.|++.+...+.... .+.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDA----GNMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHH----HHHhchhh------hcCceEE
Confidence 887765 457788888999999988764 5899999999999865433222222 12222111 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCCcH
Q 001309 945 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 945 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-----~dvdl~~LA~~TeGySg 1007 (1103)
|++|+.. ..+|+++.|||. .+.++.|+.+++..|++.+....... .+..+..++..+.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999875 468999999995 68899999999999999887664332 44567777788877743
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=99.44 E-value=2.1e-12 Score=154.88 Aligned_cols=187 Identities=25% Similarity=0.360 Sum_probs=132.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|++++|++.+++.|...+.... + ..+++++||+||||+|||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4589999999999999999886422 1 2346789999999999999999999999999999998764321
Q ss_pred ccccHHHHHHHHHHHHh------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 877 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
..+..+...+.. ..+.||+|||+|.|..... .. ..+.++..++. .+..+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~----~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RG----GARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hh----HHHHHHHHHHc------CCCCEEEeccC
Confidence 233333333322 2467999999999853211 11 11223323321 22346677888
Q ss_pred CCCCcH-HHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHH
Q 001309 951 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLC 1014 (1103)
Q Consensus 951 p~~Ld~-aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~ 1014 (1103)
+..+.. .+++|+ ..+.|+.|+.++...+++.++...++. ++..+..|+..+.|.....+..|.
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888877 565565 689999999999999999999876653 556688888888775555554443
No 105
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.44 E-value=2.9e-13 Score=145.24 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCC
Q 001309 540 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 608 (1103)
Q Consensus 540 ~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~-~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~ 608 (1103)
..|.+||+-+.. ..|+|+||++.|.+-. | =.++.+.|...|+.+. .+|+-|||||+++-
T Consensus 197 r~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~------- 266 (368)
T COG1223 197 RRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL------- 266 (368)
T ss_pred HHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh-------
Confidence 346688888877 9999999999998522 1 2456666666666653 38999999996443
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccch
Q 001309 609 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 688 (1103)
Q Consensus 609 ~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~I 688 (1103)
+|+ |.|.||+.+++|.||+.+.|..|
T Consensus 267 ---------------LD~---------------------------------------aiRsRFEeEIEF~LP~~eEr~~i 292 (368)
T COG1223 267 ---------------LDP---------------------------------------AIRSRFEEEIEFKLPNDEERLEI 292 (368)
T ss_pred ---------------cCH---------------------------------------HHHhhhhheeeeeCCChHHHHHH
Confidence 554 88889999999999998877777
Q ss_pred hHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHH-HHhhhhhhccc
Q 001309 689 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 733 (1103)
Q Consensus 689 l~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~-Lv~~A~s~al~ 733 (1103)
+.-- ...-++ -+.+++.++.+|+|++|-||.+ ++..|...|+.
T Consensus 293 le~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 293 LEYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 7665 444555 6678999999999999999876 45555544443
No 106
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=9.7e-13 Score=154.16 Aligned_cols=187 Identities=24% Similarity=0.345 Sum_probs=119.0
Q ss_pred CCCCCccc-ccCcHHHHHHHHHHHhcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 795 DIGVTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 795 e~~~sfdd-I~G~e~ik~~L~e~V~~pl~~pe~f~~--~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
++...+++ |+|++.+++.|...+..++.+-..... .....+..++||+||||||||++|+++|..++.+|+.+++..
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 33334544 899999999998877654433211100 012234568999999999999999999999999999999988
Q ss_pred ccc-cccccc-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCch-h-HHHHHHHHhHHhhhcCCc--------
Q 001309 872 ITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-H-EAMRKMKNEFMVNWDGLR-------- 935 (1103)
Q Consensus 872 L~s-~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~-~-~~l~~vl~~LL~~ldgl~-------- 935 (1103)
+.. .|.|.. +..+..++..+ .+..++||||||||.+.....++.. . .....+.+.|+..+++-.
T Consensus 144 l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg 223 (412)
T PRK05342 144 LTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 223 (412)
T ss_pred cccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCC
Confidence 753 466654 33445544432 3456799999999999755322110 0 001124444555554321
Q ss_pred -ccCCccEEEEEecCCCC----------------------------------------------------CCcHHHHhcc
Q 001309 936 -TKDKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRL 962 (1103)
Q Consensus 936 -~k~~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlrRF 962 (1103)
..+....++|.|+|..+ -+.|+|+.|+
T Consensus 224 ~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRl 303 (412)
T PRK05342 224 RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRL 303 (412)
T ss_pred cCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCC
Confidence 11123455566655411 0356777788
Q ss_pred ccccccCCCCHHHHHHHHH
Q 001309 963 PRRLMVNLPDAPNREKIIR 981 (1103)
Q Consensus 963 ~~~I~l~lPd~eeR~eIL~ 981 (1103)
+.++.|...+.++..+|+.
T Consensus 304 d~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 304 PVVATLEELDEEALVRILT 322 (412)
T ss_pred CeeeecCCCCHHHHHHHHH
Confidence 8888888889888888886
No 107
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-12 Score=154.65 Aligned_cols=174 Identities=21% Similarity=0.348 Sum_probs=125.9
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc--------
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 872 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L-------- 872 (1103)
+|=.|++++|+.+.+++.--..+ + ....+-+.|+||||+|||++++.||..++..|++++..-+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 45789999999999988631111 1 2233458999999999999999999999999999986443
Q ss_pred -ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHH-----hHHhhhcCCcccCCccEEEEE
Q 001309 873 -TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 873 -~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~-----~LL~~ldgl~~k~~~~VlVIa 946 (1103)
...|+|.+...+-+......-..| +++|||||.+.. ........++..++. .|+.+.-.++- +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-GHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-CCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 233777777677777666665554 788999999962 222223334433332 23322222222 236899999
Q ss_pred ecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 947 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 947 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
|+|..+.+++.++.|+ .+|.+.=+..++..+|-+.++-.
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999999 78899999999999999988744
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=99.44 E-value=2.5e-12 Score=146.40 Aligned_cols=181 Identities=24% Similarity=0.250 Sum_probs=124.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s~ 871 (1103)
..+|++++|++++.+.|+.++.. . ..+++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999887652 1 124799999999999999999999972 2366666654
Q ss_pred cccccccccHHHHHHHHHH-HHh------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 872 ITSKWFGEGEKYVKAVFSL-ASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~-A~~------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
..+ ...++..... +.. ....||+|||+|.|. ...+..+.+++ +.. +....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~l-------E~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRTM-------EIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHHH-------hcc----cCCceE
Confidence 321 1123333222 111 235799999999983 22233333332 221 133567
Q ss_pred EEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 945 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 945 IaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..+..++..+.|-.. .+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR-~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR-QALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 778888888999999998 689999999999999999998886654 56668888888776443 4444444
No 109
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=7.5e-12 Score=144.21 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=128.2
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 871 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---------~~fi~v~~s~ 871 (1103)
+++.|.++..+.|...+...+. ...+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3789999999999887763221 12235799999999999999999988752 6788899865
Q ss_pred cccc----------cc--c--------ccHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh
Q 001309 872 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 872 L~s~----------~~--G--------~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ 930 (1103)
..+. .. + ........++..... .++.||+|||+|.|.... + .++.+++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3221 10 1 112234445554433 346799999999996211 1 133333322
Q ss_pred hcCCcccCCccEEEEEecCCCC---CCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHH---
Q 001309 931 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIAN--- 1000 (1103)
Q Consensus 931 ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~~---~~l~~dvdl~~LA~--- 1000 (1103)
+.. ......++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+.. .....+..+..++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111235788999998875 57888888885 57899999999999999998863 11222333344443
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhH
Q 001309 1001 MADGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 1001 ~TeGySg~DL~~L~~~Aa~~air 1023 (1103)
.+.|... ...++|..|+..+..
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHHH
Confidence 4446544 444566776655543
No 110
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.5e-12 Score=153.90 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=134.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+.+.|...+.. .+.++++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 2345789999999999999999999998652
Q ss_pred ---------------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHH
Q 001309 864 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 924 (1103)
Q Consensus 864 ---------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl 924 (1103)
++.++.. .......++.+++.+... ...|+||||+|.|. ....
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 1222211 112344677777766533 24699999999882 1223
Q ss_pred HhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcC
Q 001309 925 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1003 (1103)
Q Consensus 925 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~Te 1003 (1103)
+.|+..++. ++..+++|++|+.+..+.+++++|+ .++.+..++.++...+++..+++++.. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 444444443 3456788888888889999999998 678899999999999999999887654 4556788999888
Q ss_pred CCcHHHHHHHHHHHH
Q 001309 1004 GYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 1004 GySg~DL~~L~~~Aa 1018 (1103)
| +.+++.++++.+.
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5556666555553
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.5e-12 Score=152.94 Aligned_cols=185 Identities=21% Similarity=0.242 Sum_probs=136.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|+|++|++.+++.|...+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887653 344578999999999999999999997643
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
.++.+++++- .+-..++.+.+.+... ...|++|||+|.|. ....+.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455554321 1234566666666432 34699999999882 12344555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+.+|.+|+.+..+.+++++|+ ..+.+..++.++..+.++..+.+++.. ++..+..|+..++| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 3356778888888888999999999 678999999999999999998887654 56667888888876 55
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
+++.+++..+.
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 56666665554
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=2.1e-12 Score=150.60 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=127.0
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 865 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi------------- 865 (1103)
.|++|+|++.+++.|++.+......+..+ + .+.++++||+||+|+|||++|+++|+.+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999997644322211 1 124578999999999999999999998755310
Q ss_pred --EEecCcccc---ccccccHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc
Q 001309 866 --NISMSSITS---KWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 936 (1103)
Q Consensus 866 --~v~~s~L~s---~~~G~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~ 936 (1103)
.-+.+++.- ......-..++.++..+...+ ..|+||||+|.|. . ...+.|+..++..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----~-------~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----E-------RAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----H-------HHHHHHHHHhhcC--
Confidence 000111100 000112335778887776432 3699999999982 1 1224455555442
Q ss_pred cCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 937 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 937 k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
+.++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. ...+ +......++..+.|..+..+..+..
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 234555555555899999999999 6899999999987777653 2232 3455678899999988877665543
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=8.7e-12 Score=145.23 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=128.8
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc-
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS- 874 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s- 874 (1103)
+.+.|.++..+.|...+...+. ...+.+++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4688999999998887753221 1223579999999999999999999877 57889999864321
Q ss_pred ---------cccc--------ccHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc
Q 001309 875 ---------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 936 (1103)
Q Consensus 875 ---------~~~G--------~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~ 936 (1103)
...+ ..+..+..++..... ..+.||+|||+|.+..... . ..+..++..+....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~----~----~~l~~l~~~~~~~~- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG----N----DVLYSLLRAHEEYP- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC----c----hHHHHHHHhhhccC-
Confidence 1111 112334444444433 3457999999999862111 1 23444444443332
Q ss_pred cCCccEEEEEecCCC---CCCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHcCCCc--H
Q 001309 937 KDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS--G 1007 (1103)
Q Consensus 937 k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~~~---~l~~dvdl~~LA~~TeGyS--g 1007 (1103)
..++.+|+++|.. +.+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.++..+.+.+ .
T Consensus 171 --~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 171 --GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred --CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 2368888888765 357788888774 568999999999999999887642 1234455677777774322 2
Q ss_pred HHHHHHHHHHHhhh
Q 001309 1008 SDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~~a 1021 (1103)
+.+..+|..|+..+
T Consensus 249 r~a~~ll~~a~~~a 262 (394)
T PRK00411 249 RVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445666665444
No 114
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.9e-12 Score=154.91 Aligned_cols=186 Identities=23% Similarity=0.279 Sum_probs=134.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 45899999999999999998763 2345679999999999999999999998653
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ......++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222111 1223456666665432 234799999999872 12334455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. .+..+.+|++|+.+..+.+.+++|+ ..+.|..++.++-..+++.++.++++. ++..+..|+..+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 55544 2356788888888899999999998 678889999999999999999887654 45567888888876 56
Q ss_pred HHHHHHHHHHHh
Q 001309 1008 SDLKNLCVTAAH 1019 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~ 1019 (1103)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 666677665543
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=4.3e-12 Score=150.94 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=112.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 911 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 911 (1103)
++++|+||+|+|||+|++++++++ +..++.+++.++...+..........-|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 566888898876654433221111122332222 56899999999884322
Q ss_pred CCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001309 912 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 912 ~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
..++.+..+++.+... ...+||+++..|.. +++.+.+||. ..+.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1233334444444321 23456666556554 6789999995 47889999999999999999887
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 987 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 987 ~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 5443 56668888888776 4556555555443
No 116
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.4e-13 Score=157.51 Aligned_cols=172 Identities=22% Similarity=0.313 Sum_probs=127.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc---------
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--------- 872 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L--------- 872 (1103)
|=.|++++|+.+.+++.-..... . ....-++|+||||+|||+|++.||+.++..|+.++..-+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~--~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------K--LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------c--CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56899999999999886422211 1 112358999999999999999999999999999997543
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHH-----hHHhhhcCCcccCCccEEEEEe
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~-----~LL~~ldgl~~k~~~~VlVIaT 947 (1103)
...|+|.....+-+....|....| +++|||||.|... .......++..++. .|..+.-.++- +-.+|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 234788877777777788877665 7889999999533 22233344444432 22222222222 2367999999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001309 948 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 948 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
+|..+.++..++.|. .+|.+.-++.++..+|.+.++-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 7899999999999999998873
No 117
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.40 E-value=8.3e-12 Score=146.55 Aligned_cols=167 Identities=20% Similarity=0.302 Sum_probs=110.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHH-HHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~-~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
..++|+||+|+|||+|++++++++ +..++.+++.++...+...... .+. -|....+ .+.+|+||||+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKME-EFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHH-HHHHHHH-hCCEEEEehhhhhcCC
Confidence 569999999999999999999887 5778889887765443221110 111 1222222 3579999999988532
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHh
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
. ..++.+..+++.+.. . ...+||+++..|. .+++.+.+||. ..+.++.|+.++|..|++..+.
T Consensus 215 ~---~~~~~l~~~~n~~~~-------~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 E---RTQEEFFHTFNALHE-------N--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred H---HHHHHHHHHHHHHHH-------C--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 123333344443331 1 2335555555554 36688999985 4689999999999999999998
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 986 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 986 ~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
...+. ++..++.||....+ +.++|..++....
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 76554 56668888988775 4566666655443
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5.7e-12 Score=153.57 Aligned_cols=185 Identities=20% Similarity=0.247 Sum_probs=132.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 35899999999999999998763 2334568999999999999999999998652
Q ss_pred ----------------EEEEecCccccccccccHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHH
Q 001309 864 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 923 (1103)
Q Consensus 864 ----------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~v 923 (1103)
++.++... ...-..++.+.+.+...+ ..|++|||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22222211 112234666665543222 3599999999982 122
Q ss_pred HHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 001309 924 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1002 (1103)
Q Consensus 924 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T 1002 (1103)
.+.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4455555544 3356777777788888888999998 788999999999999999988887654 445578888888
Q ss_pred CCCcHHHHHHHHHHHH
Q 001309 1003 DGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 1003 eGySg~DL~~L~~~Aa 1018 (1103)
+| +.+++.+++..+.
T Consensus 216 ~G-slR~al~lLdq~i 230 (618)
T PRK14951 216 RG-SMRDALSLTDQAI 230 (618)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 5556666665544
No 119
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.39 E-value=3.9e-12 Score=147.28 Aligned_cols=179 Identities=22% Similarity=0.364 Sum_probs=128.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 879 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s-~~~G-~ 879 (1103)
.|+|++++++.+..++...+++..+........++.++||+||||+|||++|+++|..++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998888653333222111111123578999999999999999999999999999999987764 5777 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 001309 880 GEKYVKAVFSLAS------------------------------------------------------------------- 892 (1103)
Q Consensus 880 ~e~~i~~lF~~A~------------------------------------------------------------------- 892 (1103)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666666651
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 001309 893 ---------------------------------------------------------------------K--IAPSVVFV 901 (1103)
Q Consensus 893 ---------------------------------------------------------------------~--~~PsILfI 901 (1103)
. .+.+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13479999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc------CCccEEEEEec----CCCCCCcHHHHhccccccccCCC
Q 001309 902 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 971 (1103)
Q Consensus 902 DEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~lP 971 (1103)
||||.++....+.+......-+.+.|+..++|-.-. +-.+|++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999866432211111223556677777663211 23678999885 45778889999999999999999
Q ss_pred CHHHHHHHH
Q 001309 972 DAPNREKII 980 (1103)
Q Consensus 972 d~eeR~eIL 980 (1103)
+.++-..||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.9e-12 Score=152.18 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999988763 2344678999999999999999999998652
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++.+. ...-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11233566666665432 23699999999882 12344555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. .+..+.+|++|+.+..+.+.+++|+ ..+.|..++.++-.+.+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 2356777777877888888899998 789999999999999999888876654 44556778888776 44
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
++..+++..+.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 55555655443
No 121
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8e-12 Score=150.56 Aligned_cols=185 Identities=23% Similarity=0.280 Sum_probs=128.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 35899999999999999987762 234456999999999999999999998864
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
.++.++... .. +-..++.+...+.. ....|+||||+|.| + ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----s-------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----S-------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----c-------HHHHHHHH
Confidence 233333211 01 12234455544432 23469999999988 2 12334455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. .+..+.+|++|+.+..+.+++++|+ ..+.|..++.++-.+.++..+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEE----PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhc----CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2355677777777888888899999 789999999999999999888876644 45557788888876 44
Q ss_pred HHHHHHHHHHH
Q 001309 1008 SDLKNLCVTAA 1018 (1103)
Q Consensus 1008 ~DL~~L~~~Aa 1018 (1103)
+++.++++.+.
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.38 E-value=5.9e-12 Score=138.57 Aligned_cols=183 Identities=24% Similarity=0.345 Sum_probs=129.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------cEEEEecC
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 870 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~------~fi~v~~s 870 (1103)
..+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|.++.. .+...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999998752 12358999999999999999999999965 23444555
Q ss_pred ccccccccccHHHHHHHHHHHHh---------cCC-eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCc
Q 001309 871 SITSKWFGEGEKYVKAVFSLASK---------IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 940 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~---------~~P-sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~ 940 (1103)
+-.+..++ ...++ -|..... .+| .||+|||.|.| ....+.+++++++.+ ..
T Consensus 98 derGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----tsdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----TSDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----hHHHHHHHHHHHhcc-----------cc
Confidence 54433222 11111 1222211 122 69999999999 334455666655542 35
Q ss_pred cEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 001309 941 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 941 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
.+++|..||..+.+...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+..++|--.+.+..|
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6899999999999999999998 456777777777778888888887765 55567888888888655554444
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=9.4e-12 Score=151.40 Aligned_cols=183 Identities=25% Similarity=0.328 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 234567999999999999999999998853
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
+++.++++. ..+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 234444321 12234566666665532 24699999999882 12344555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+++|.+|+.++.+.+++++|+ ..+.|..|+.++...+++..+.+.++. ++..+..++..++| +.
T Consensus 141 KtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2356777777788899999999998 568899999999999999998887653 45567788888877 44
Q ss_pred HHHHHHHHH
Q 001309 1008 SDLKNLCVT 1016 (1103)
Q Consensus 1008 ~DL~~L~~~ 1016 (1103)
++..+++..
T Consensus 215 R~al~~Ldq 223 (559)
T PRK05563 215 RDALSILDQ 223 (559)
T ss_pred HHHHHHHHH
Confidence 444444443
No 124
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=148.63 Aligned_cols=184 Identities=22% Similarity=0.282 Sum_probs=129.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999998763 2334567999999999999999999988531
Q ss_pred ----------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHh
Q 001309 864 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 929 (1103)
Q Consensus 864 ----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~ 929 (1103)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ....+.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33344321 1122345555444432 245799999999771 123344454
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 001309 930 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1008 (1103)
Q Consensus 930 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~ 1008 (1103)
.++. .+..+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++..+.+.++. ++..+..|+..++|..+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR- 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR- 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-
Confidence 4443 2345777778888899999999998 578999999999999999999887654 55567888888887543
Q ss_pred HHHHHHHHH
Q 001309 1009 DLKNLCVTA 1017 (1103)
Q Consensus 1009 DL~~L~~~A 1017 (1103)
++.++++.+
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 444444443
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=3e-11 Score=143.20 Aligned_cols=168 Identities=15% Similarity=0.237 Sum_probs=110.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 912 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~ 912 (1103)
.++++||||+|+|||+|++++++++ +..++.+++..+...+.......-...|.... ....+|+||||+.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999876 68888888766544322111110112233333 246899999999884322
Q ss_pred CCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhc
Q 001309 913 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 913 ~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~ 987 (1103)
..++.+..+++.+... ...+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...
T Consensus 219 --~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 2344555555555421 2345555544453 56789999995 678899999999999999998876
Q ss_pred ccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 988 ELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 988 ~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
++. ++..++.|+....+ ..++|...+...
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 543 45556667777664 344555544444
No 126
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.4e-11 Score=149.40 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=128.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+-++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998763 2224689999999999999999999999653
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ...-..++.+...+. .....||||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 33333211 011123333332222 2234799999999882 12335555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg 1007 (1103)
..++. ....+++|++|+.+..+.+.+++|+ ..+.|..++.++...+++..+..+.+ .++..++.|+..+.|...
T Consensus 141 k~LEE----P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEE----PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhc----cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55544 2246788888888888999999998 57889999999999999988887665 356668888888887655
Q ss_pred HHHHHH
Q 001309 1008 SDLKNL 1013 (1103)
Q Consensus 1008 ~DL~~L 1013 (1103)
..+..|
T Consensus 216 ~Al~lL 221 (624)
T PRK14959 216 DSMSLL 221 (624)
T ss_pred HHHHHH
Confidence 444443
No 127
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=1.5e-11 Score=141.11 Aligned_cols=186 Identities=26% Similarity=0.340 Sum_probs=131.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++++.+.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2344679999999999999999999987432
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 23333221 11223466677666543 23699999999882 12334455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. .+..+++|++|+.+..+.+++++|+ ..+.+..|+.++..++++..+++.++. ++..+..++..+.| +.
T Consensus 139 ~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEE----PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhC----CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 55544 2345777778888888889999998 578899999999999999998876643 44567778888776 45
Q ss_pred HHHHHHHHHHHh
Q 001309 1008 SDLKNLCVTAAH 1019 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~ 1019 (1103)
+.+.+.++.+..
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.36 E-value=2.2e-11 Score=137.83 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=108.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|++++|++.+++.+...+.. ...++.+||+||||+|||++|++++++.+.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999987752 123355777999999999999999999999999999876 11
Q ss_pred ccccHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc
Q 001309 877 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 955 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 955 (1103)
.......+........ ...+.||+|||+|.+.. ...+. .+..+ ++.. +.++.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~----~L~~~---le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----ADAQR----HLRSF---MEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----HHHHH----HHHHH---HHhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 12468999999998721 11112 22222 2221 24567888999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001309 956 EAVVRRLPRRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 956 ~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
+++++|| ..+.++.|+.+++..+++.++.
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999 5788999999999888776544
No 129
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.5e-11 Score=148.54 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=129.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
+.+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 45899999999999999887752 234467999999999999999999999853
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
.++.+++.. ..+-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~-------~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----T-------SAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----H-------HHHHHHH
Confidence 222332211 01223456665555432 23699999999882 1 1234455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+++|++|+.+..+.+++++|+ ..+.+..|+.++...+++..+.+.+. .++..+..++..+.|. .
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-l 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-L 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-H
Confidence 54444 2356778888888899999999998 57999999999999999998887654 3455678888888874 4
Q ss_pred HHHHHHHHH
Q 001309 1008 SDLKNLCVT 1016 (1103)
Q Consensus 1008 ~DL~~L~~~ 1016 (1103)
+++.++++.
T Consensus 215 R~AlnlLek 223 (605)
T PRK05896 215 RDGLSILDQ 223 (605)
T ss_pred HHHHHHHHH
Confidence 444444444
No 130
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.36 E-value=1.8e-11 Score=139.10 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=122.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s~ 871 (1103)
..+|++++|++.+++.|..++.. ....++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS--------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45799999999999999887752 1123799999999999999999999883 3567888766
Q ss_pred ccccc-------------ccc-------cHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001309 872 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 926 (1103)
Q Consensus 872 L~s~~-------------~G~-------~e~~i~~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~ 926 (1103)
+.... .+. ....++.+....... .+.+|+|||+|.+. ...+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~-------~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQ-------A 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHH-------H
Confidence 43211 000 012233333333222 24699999999872 11122 2
Q ss_pred HHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 001309 927 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1005 (1103)
Q Consensus 927 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGy 1005 (1103)
+...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+.++. ++..++.|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 222222221 22445556666667778888887 578899999999999999988876654 56667888888754
Q ss_pred cHHHHHHHHHH
Q 001309 1006 SGSDLKNLCVT 1016 (1103)
Q Consensus 1006 Sg~DL~~L~~~ 1016 (1103)
+.+++.+.++.
T Consensus 219 dlr~l~~~l~~ 229 (337)
T PRK12402 219 DLRKAILTLQT 229 (337)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.36 E-value=1.7e-11 Score=132.93 Aligned_cols=189 Identities=24% Similarity=0.338 Sum_probs=135.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
.+.+++++|.+.+++.|.+.... |.. ..|..++||+|++|||||++++++.+++ |..+|.+...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887654 333 3477899999999999999999999877 7788888765543
Q ss_pred cccccccHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+..++...+.. .+-|||+|++- | ...+. -...|...++|--...+.+|+|.+|+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 345555555532 35799999974 2 11111 124556667776666789999999999743
Q ss_pred CCcH-----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhcccCCc-ccH----HHHHHHcCC
Q 001309 953 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDL----EGIANMADG 1004 (1103)
Q Consensus 953 ~Ld~-----------------------aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~d-vdl----~~LA~~TeG 1004 (1103)
.+.+ ++..||+..+.|..|+.++-.+|++.++.+..+.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2211 344499999999999999999999999988766533 233 234444557
Q ss_pred CcHHHHHHHHH
Q 001309 1005 YSGSDLKNLCV 1015 (1103)
Q Consensus 1005 ySg~DL~~L~~ 1015 (1103)
.||+--.+.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 78865555543
No 132
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.35 E-value=2.2e-11 Score=151.42 Aligned_cols=182 Identities=21% Similarity=0.375 Sum_probs=124.0
Q ss_pred CCCcccccCcHHHHH---HHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~---~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..+|++++|++.+.. .|++.+.. ....++||+||||||||++|+++++..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 358999999999885 45554431 122479999999999999999999999999998887531
Q ss_pred cccccccHHHHHHHHHHHH-----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec
Q 001309 874 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 948 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~-----~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT 948 (1103)
..+.++.++..+. .....+|||||||.| +...+.. |+..++ ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----n~~qQda-------LL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----NKAQQDA-------LLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----CHHHHHH-------HHHHhc------CceEEEEEec
Confidence 1122333333332 124579999999988 2112222 222222 1446777665
Q ss_pred --CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-------ccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 949 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 949 --N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~-------~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
|....+++++++|+ ..+.++.++.+++..+++.++.. ..+ .++..++.|+..+.| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33457889999997 67899999999999999998872 222 245557888888765 4566777777665
Q ss_pred h
Q 001309 1019 H 1019 (1103)
Q Consensus 1019 ~ 1019 (1103)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 133
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.9e-11 Score=148.44 Aligned_cols=183 Identities=18% Similarity=0.191 Sum_probs=127.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 45899999999999999998763 2344568999999999999999999988642
Q ss_pred -------------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001309 864 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 926 (1103)
Q Consensus 864 -------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~ 926 (1103)
++.++.+.. .+-..++.+...+.. ....|++|||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222222110 112334444444322 234699999999882 123445
Q ss_pred HHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 001309 927 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1005 (1103)
Q Consensus 927 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGy 1005 (1103)
|+..++. .+..+++|++|+.+..+.+++++|+ .++.|..++.++..++++.++.++++. ++..+..++..+.|-
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 5555554 3456888888888899999999997 689999999999999999988887653 444566677776653
Q ss_pred cHHHHHHHHHH
Q 001309 1006 SGSDLKNLCVT 1016 (1103)
Q Consensus 1006 Sg~DL~~L~~~ 1016 (1103)
.+++.++++.
T Consensus 213 -lR~aln~Ldq 222 (584)
T PRK14952 213 -PRDTLSVLDQ 222 (584)
T ss_pred -HHHHHHHHHH
Confidence 3344444433
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.34 E-value=9.7e-12 Score=145.31 Aligned_cols=185 Identities=22% Similarity=0.342 Sum_probs=117.8
Q ss_pred CCccc-ccCcHHHHHHHHHHHhcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001309 798 VTFDD-IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 872 (1103)
Q Consensus 798 ~sfdd-I~G~e~ik~~L~e~V~~pl~~pe~f-~~---~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L 872 (1103)
..+++ ++|++++++.+...+.....+-... .. .++.....++||+||||||||++|+++|..++.+|..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34444 8999999999988775433321110 00 0111224589999999999999999999999999999998876
Q ss_pred cc-cccccc-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchh-H-HHHHHHHhHHhhhcCCcc--------
Q 001309 873 TS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-E-AMRKMKNEFMVNWDGLRT-------- 936 (1103)
Q Consensus 873 ~s-~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~-~-~l~~vl~~LL~~ldgl~~-------- 936 (1103)
.. .|+|.. +..+..++..+ ....++||||||||.+..++.++... . ....+.+.|+..++|...
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 53 466764 34444444322 23467899999999997644322110 0 001244445555544321
Q ss_pred -cCCccEEEEEecCCCC--------------------------------------------------CCcHHHHhccccc
Q 001309 937 -KDKERVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRR 965 (1103)
Q Consensus 937 -k~~~~VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRF~~~ 965 (1103)
.+..+.++|.|+|-.+ -+.|+|+.|++.+
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 1224567777776510 0336666688888
Q ss_pred cccCCCCHHHHHHHHHH
Q 001309 966 LMVNLPDAPNREKIIRV 982 (1103)
Q Consensus 966 I~l~lPd~eeR~eIL~~ 982 (1103)
+.|.+.+.++..+|+..
T Consensus 313 v~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 313 ATLEKLDEEALIAILTK 329 (413)
T ss_pred eecCCCCHHHHHHHHHH
Confidence 88888888888888765
No 135
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.5e-11 Score=154.37 Aligned_cols=182 Identities=19% Similarity=0.169 Sum_probs=126.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.||+.+.|.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2334569999999999999999999999652
Q ss_pred -------------EEEEecCccccccccccHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001309 864 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 926 (1103)
Q Consensus 864 -------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~ 926 (1103)
|+.++.... ..-..++.+...+ ......|+||||+|.|. ....+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 222222110 0122334433322 23345799999999982 123345
Q ss_pred HHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 001309 927 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1005 (1103)
Q Consensus 927 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGy 1005 (1103)
|+..++.. +..+++|++|+.++.|.++|++|+ ..+.|..++.++..++|+.++.++++. ++..+..|+..+.|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 55555542 356788888888888999999998 688999999999999999998877654 44456667777766
Q ss_pred cHHHHHHHHH
Q 001309 1006 SGSDLKNLCV 1015 (1103)
Q Consensus 1006 Sg~DL~~L~~ 1015 (1103)
+.+++.++++
T Consensus 214 dlR~Al~eLE 223 (824)
T PRK07764 214 SVRDSLSVLD 223 (824)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 136
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.34 E-value=5.2e-12 Score=143.41 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhcc--CCCCeEEEEcChhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEe
Q 001309 540 LAINELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIG 594 (1103)
Q Consensus 540 ~~~~~l~evl~~e~--~~~p~Ilf~~d~e~~l~~~--------~~~~-~~l~~~L~~l--------------~g~vvvIg 594 (1103)
.+|.++|+.+...+ +.+|+||||+|||..+.+. .++. ..|...++.+ ...|+||+
T Consensus 194 k~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa 273 (413)
T PLN00020 194 KLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV 273 (413)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence 34568888887665 4789999999999965521 2332 4455555432 34799999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHH
Q 001309 595 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWK 672 (1103)
Q Consensus 595 s~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rfe 672 (1103)
++|+++. ||+ ||+| ||+
T Consensus 274 TTNrpd~----------------------LDp---------------------------------------ALlRpGRfD 292 (413)
T PLN00020 274 TGNDFST----------------------LYA---------------------------------------PLIRDGRME 292 (413)
T ss_pred eCCCccc----------------------CCH---------------------------------------hHcCCCCCC
Confidence 9995444 333 9999 999
Q ss_pred HHHhhchhhhhcccchhHHHHHhhhCCCCccchhhhhhccCC----CCHHHHHHHHhhhhhhccc
Q 001309 673 QQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 673 rq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg----~sgadI~~Lv~~A~s~al~ 733 (1103)
+.+ .+|+.++|.+|+++|++ ..+++.+++..|+..+.| |.||--+.+...++...+.
T Consensus 293 k~i--~lPd~e~R~eIL~~~~r--~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 293 KFY--WAPTREDRIGVVHGIFR--DDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred cee--CCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 965 59999999999999965 447788999999998877 5666655555555544443
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=7e-11 Score=127.78 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=113.0
Q ss_pred CCCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001309 797 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~--G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~ 871 (1103)
..+|+++. +.+.+...+.+.... .....+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788855 335555555554431 1234579999999999999999999876 67888888766
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc-EEEEEecCC
Q 001309 872 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 950 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~-VlVIaTTN~ 950 (1103)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999987 2223333434433321 1123 344444333
Q ss_pred C--CCCcHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001309 951 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1016 (1103)
Q Consensus 951 p--~~Ld~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~ 1016 (1103)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+.....+. ++..++.|+...+| +.+++..+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 24568888887 4688899999988999998877665443 45556777775554 55666666654
No 138
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.33 E-value=4e-12 Score=151.80 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhccC-CCCeEEEEcChhhhhcc-----Ch----hhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCC
Q 001309 541 AINELFEVALNESK-SSPLIVFVKDIEKSLTG-----NN----DAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 608 (1103)
Q Consensus 541 ~~~~l~evl~~e~~-~~p~Ilf~~d~e~~l~~-----~~----~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~ 608 (1103)
.+..+|+.+...+. ..|+||||+|+|.++.. +. .+.+.|...|+.+. ++|+|||+||+++.
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~------- 345 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDM------- 345 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhh-------
Confidence 45567777765444 68999999999997652 11 23344555555554 58999999995443
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhccc
Q 001309 609 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 686 (1103)
Q Consensus 609 ~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 686 (1103)
||| |++| ||++++++++|+.++|.
T Consensus 346 ---------------LDp---------------------------------------ALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 346 ---------------IDP---------------------------------------AILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred ---------------CCH---------------------------------------hhcCccccceEEEeCCCCHHHHH
Confidence 444 8988 99999999999999999
Q ss_pred chhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 687 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 687 ~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
.|++.|..- .-++ +.+ ...+.|+.++++.++|..|....+.
T Consensus 372 ~Il~~~l~~-~l~l-~~~----l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 372 DIFSKYLTD-SLPL-DAD----LAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHhhc-cCCc-hHH----HHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999998421 1122 222 3346899999999999999765554
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=5.1e-11 Score=128.05 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=117.1
Q ss_pred CCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001309 798 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 872 (1103)
Q Consensus 798 ~sfddI~--G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L 872 (1103)
.+|++++ +.....+.+++.+. .....+++|+||+|||||++|+++++++ +.+++.++|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 5677764 45566677766543 1234689999999999999999999887 578888998776
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.... ..++.... .+.+|+|||+|.+.... ..++.+..+++... . . ...+|+.++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~---~--~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E---A--GGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H---c--CCeEEEECCCChH
Confidence 5321 22332222 34699999999872110 11333333333221 1 1 1234444343443
Q ss_pred CC--c-HHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 953 DL--D-EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 953 ~L--d-~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
.+ . +.+.+|+ ...+.++.|+.+++..+++.+..+..+. ++..+..|+.... .+.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 33 2 7788887 3678899999999999999887654433 4555677777544 467788777766543
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.33 E-value=2.6e-11 Score=148.13 Aligned_cols=181 Identities=19% Similarity=0.247 Sum_probs=121.0
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecC
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 870 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~~s 870 (1103)
+.|.+.++..++|..++...+.. ..|...++|+|+||||||++++.+..++ .+.++.++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 46899999999999888643321 1232345799999999999999998766 2668899995
Q ss_pred ccccc----------ccc-------ccHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhh
Q 001309 871 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 931 (1103)
Q Consensus 871 ~L~s~----------~~G-------~~e~~i~~lF~~A~~--~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~l 931 (1103)
.+... ..+ .....+..+|..... ....||+|||||.|... .+..+. .|+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLY----nLFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLF----TLFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHH----HHHHH-
Confidence 43211 101 123456666765532 23469999999999532 223322 22221
Q ss_pred cCCcccCCccEEEEEecCC---CCCCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHcC
Q 001309 932 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 1003 (1103)
Q Consensus 932 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRF~~-~I~l~lPd~eeR~eIL~~ll~~~-~l~~dvdl~~LA~~Te 1003 (1103)
.. ....++.|||++|. ++.|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..+..+|....
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 11 12367999999986 55677888888864 48889999999999999988753 2334555677777444
No 141
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.5e-11 Score=146.13 Aligned_cols=193 Identities=23% Similarity=0.275 Sum_probs=142.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 868 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f-------i~v~- 868 (1103)
..+|+|++|++.+...|...+.. .+-.+++|+.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 45899999999999999998874 33456899999999999999999999996542 1111
Q ss_pred cCccccc-cc---------cccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 869 MSSITSK-WF---------GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 869 ~s~L~s~-~~---------G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
|..+... +. ..+-..++.+.+.+.. .+..|++|||+|.| .....+.|+..++.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhccccc-
Confidence 1111111 01 1123356666665542 33569999999988 24566777766655
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 001309 935 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
++..|.+|.+|..+..++..+++|+ .++.|..-+.++-...+..++.++.+. ++..+..+|+..+| +.+|...+
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 5688999999999999999999998 678899999999999999999998876 45557778888887 55666666
Q ss_pred HHHHHhh
Q 001309 1014 CVTAAHC 1020 (1103)
Q Consensus 1014 ~~~Aa~~ 1020 (1103)
+..|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 6666544
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.7e-11 Score=148.02 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=127.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 2345678999999999999999999998642
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ...-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333221 11223456666555422 23599999999882 12234455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+++|.+|+.++.|.+++++|+ ..+.|..++.++-...++.+++++++. ++..+..|+..++|-.+
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 55544 3356888888888899999999998 688899999999888998888877653 55667788888887443
No 143
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=1.3e-10 Score=126.92 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=113.7
Q ss_pred CCCccccc-C-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCc
Q 001309 797 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~-G-~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s~ 871 (1103)
..+|++++ | ...+...+.+.... .....++|+||+|||||+|++++++++. ..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788854 4 44455555554321 1224799999999999999999998763 4455555433
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc-EEEEEecCC
Q 001309 872 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 950 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~-VlVIaTTN~ 950 (1103)
... ....+...... ..+|+||||+.+.+. ...++.+..+++.++. ..+ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 268999999988321 2233444455554431 122 345555566
Q ss_pred CCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001309 951 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1016 (1103)
Q Consensus 951 p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~ 1016 (1103)
|.. +.+.+++|+. .++.+..|+.++|.++++......++. ++..++.|+...+| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 655 5799999985 688899999999999998866654443 56668888888876 44455555544
No 144
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=4e-11 Score=147.43 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 869 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v---~~---- 869 (1103)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998863 23456789999999999999999999986532100 01
Q ss_pred ------Cccc-cc-cccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 870 ------SSIT-SK-WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 870 ------s~L~-s~-~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
.++. .. ....+...++.+...+... ...|++|||+|.|. ....+.|+..++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEE---- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEE---- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhc----
Confidence 0000 00 0001234467777666543 34699999999882 1234555655554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 938 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
++..+++|++|+.++.|.+++++|+ .++.|..|+.++...+++..+.+.++. ++..+..+|..+.|-.+ ++..++.
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR-~AlslLe 221 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLR-DALSIAE 221 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 3356788888888899999999999 589999999999999999888776654 34457778888887444 4444444
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=3.9e-11 Score=145.80 Aligned_cols=184 Identities=20% Similarity=0.226 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 45899999999999999998862 2344679999999999999999999998652
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++... ...-..++.+.+.+. .....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222110 011234555544433 2344699999999882 12345555
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++. ++..+++|++|+.+..+.+++++|+ ..+.+..++.++..++++..+...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 3456788888888889999999998 478899999999999999988776643 55667778888877 45
Q ss_pred HHHHHHHHHH
Q 001309 1008 SDLKNLCVTA 1017 (1103)
Q Consensus 1008 ~DL~~L~~~A 1017 (1103)
+++.+++..+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=3.4e-11 Score=142.89 Aligned_cols=167 Identities=19% Similarity=0.298 Sum_probs=109.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccH-HHHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e-~~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
++++||||+|+|||+|++++++++ +..++.+++.++...+..... ..+ .-|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776554322111 111 1233333446889999999988533
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHh
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
. ..++.+..+++.+.. ....+||++...|.. +.+.+.+||. ..+.+.+|+.+.|..|++..+.
T Consensus 210 ~---~~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 T---GVQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred H---HHHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 2 123334444444432 123455555566654 5577888884 4678999999999999999987
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 986 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 986 ~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
...+. ++..++.||....| +.++|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 65443 55667888888775 445555555443
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.29 E-value=3.4e-11 Score=151.19 Aligned_cols=171 Identities=19% Similarity=0.308 Sum_probs=116.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 874 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s------- 874 (1103)
+..|++++|+.+.+++...... . ..+...++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999877642221 0 112346999999999999999999999999999998765322
Q ss_pred --ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh-----HHhhhcCCcccCCccEEEEEe
Q 001309 875 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 875 --~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~-----LL~~ldgl~~k~~~~VlVIaT 947 (1103)
.|.|.....+.+.+..+.... .||+|||||.+..... .....++..++.. |....-.+. -+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEeccccccc-ccCCceEEEEc
Confidence 244444445555555544333 4899999999854321 1122333333221 000000111 12367999999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001309 948 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 948 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
+|.. .+++++++|+ .++.+..++.++..+|.+.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9887 5999999999 5889999999999999998884
No 148
>PRK06893 DNA replication initiation factor; Validated
Probab=99.29 E-value=2e-10 Score=125.06 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=99.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
+.++|+||||||||+|++++|+++ +.....++..... .....++.... +..+|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 368999999999999999999986 3444555443211 11112222222 35799999999884322
Q ss_pred CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc---HHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcc
Q 001309 914 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 988 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~~~~ 988 (1103)
..+..+..+++.... .+..++|++++..|..++ +.+.+|+ +..+.++.|+.++|.+|++..+....
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 122233344443321 113345556666666554 7888876 45788999999999999998887655
Q ss_pred cC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 989 LA-SDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 989 l~-~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
+. ++..+..|+...+|- .+.+..+++
T Consensus 179 l~l~~~v~~~L~~~~~~d-~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDRD-MHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 43 566678888887763 334444443
No 149
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8e-11 Score=136.41 Aligned_cols=185 Identities=18% Similarity=0.214 Sum_probs=126.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------EE
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 866 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f----------i~ 866 (1103)
+.+|++++|++.+++.+...+.. ...++++|||||||+|||++|+++++.+.++. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 45899999999999999988763 23346899999999999999999999885421 11
Q ss_pred EecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccE
Q 001309 867 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 942 (1103)
Q Consensus 867 v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~V 942 (1103)
+... .........++.++..+... .+.||+|||+|.+.. ...+.++..++. .+...
T Consensus 80 ~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~----~~~~~ 139 (367)
T PRK14970 80 FELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEE----PPAHA 139 (367)
T ss_pred EEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhC----CCCce
Confidence 1110 00111234566777665432 346999999998721 123444444443 22345
Q ss_pred EEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHH
Q 001309 943 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVT 1016 (1103)
Q Consensus 943 lVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~ 1016 (1103)
++|.+|+.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++ .++..+..++..+.| +.+.+.+.++.
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 66667777788999999998 56889999999999999988888765 356667788887765 34444444333
No 150
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.29 E-value=7.3e-11 Score=130.95 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=94.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccccccccHH-HHH-------------------HHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEK-YVK-------------------AVFSL 890 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~------L~s~~~G~~e~-~i~-------------------~lF~~ 890 (1103)
.++||+||||||||++|+++|..++.+++.++|.. +.+.+.+.... ... ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998854 22322221111 111 11222
Q ss_pred HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc-----CCccEEEEEecCCC-----CCCcHHHHh
Q 001309 891 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DKERVLVLAATNRP-----FDLDEAVVR 960 (1103)
Q Consensus 891 A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k-----~~~~VlVIaTTN~p-----~~Ld~aLlr 960 (1103)
|.+ .+.+|+||||+++ ++..+..+..++++....+.+.... .+.++.||+|+|+. ..+++++.+
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 322 3479999999987 3334444444444332222221111 22468899999976 367899999
Q ss_pred ccccccccCCCCHHHHHHHHHHHH
Q 001309 961 RLPRRLMVNLPDAPNREKIIRVIL 984 (1103)
Q Consensus 961 RF~~~I~l~lPd~eeR~eIL~~ll 984 (1103)
|| ..+.++.|+.++..+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 678999999999999998865
No 151
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-11 Score=136.29 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCCccccCC
Q 001309 541 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 607 (1103)
Q Consensus 541 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~ 607 (1103)
+|.+-|.-+.. ++|+|||++|||.... .++++-..|.+.|+.+.| .|-+|+|+|++|.
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt------ 283 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT------ 283 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc------
Confidence 34444444444 9999999999999654 357777778888888854 9999999996554
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcc
Q 001309 608 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 685 (1103)
Q Consensus 608 ~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 685 (1103)
||| ||+| |.|+-+++|+|++.+|
T Consensus 284 ----------------Ldp---------------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 284 ----------------LDP---------------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred ----------------cch---------------------------------------hhcCCccccceeccCCcchhhc
Confidence 444 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 686 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 686 ~~Il~IhT~-l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
..|++||.. +..++- .+-+++.....+|+|+|++..|++|--+++.
T Consensus 309 ~~I~Kih~~~i~~~Ge--id~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGE--IDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred eeeEeecccccccccc--ccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 999999986 444442 2245677778899999999999999866654
No 152
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=2.9e-10 Score=124.11 Aligned_cols=146 Identities=22% Similarity=0.303 Sum_probs=96.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
..++|+||+|||||+|++++++++ +..++.++..++.. .+..++... ....+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 56666666544221 223333332 234799999999884322
Q ss_pred CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec-CCCCCC---cHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhc
Q 001309 914 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT-N~p~~L---d~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~~~ 987 (1103)
..+..+..+++.+.. .+..||+|+ ..|..+ ++.+.+|| ...+.++.|+.++|.++++......
T Consensus 110 -~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRARA----------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 123333344433321 123345544 455544 68999996 5678899999999999999877654
Q ss_pred ccC-CcccHHHHHHHcCCC
Q 001309 988 ELA-SDVDLEGIANMADGY 1005 (1103)
Q Consensus 988 ~l~-~dvdl~~LA~~TeGy 1005 (1103)
.+. ++..+..|+..++|-
T Consensus 179 ~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CCCCCHHHHHHHHHhCCCC
Confidence 443 566678888887753
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.1e-11 Score=139.52 Aligned_cols=183 Identities=21% Similarity=0.257 Sum_probs=126.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 36899999999999999988763 2344679999999999999999999988542
Q ss_pred ------------EEEEecCccccccccccHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhH
Q 001309 864 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 927 (1103)
Q Consensus 864 ------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~L 927 (1103)
++.++.... . +-..++.+.+.+ ......||+|||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 233332110 0 112333332222 22346899999999882 1123445
Q ss_pred HhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCc
Q 001309 928 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYS 1006 (1103)
Q Consensus 928 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGyS 1006 (1103)
+..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++..++++..+++.++ .++..+..|+..+.|.
T Consensus 142 Lk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gd- 215 (451)
T PRK06305 142 LKTLEE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGS- 215 (451)
T ss_pred HHHhhc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 555544 2346777778888889999999999 57899999999999999988877654 3556678888888763
Q ss_pred HHHHHHHHHH
Q 001309 1007 GSDLKNLCVT 1016 (1103)
Q Consensus 1007 g~DL~~L~~~ 1016 (1103)
.+++.++++.
T Consensus 216 lr~a~~~Lek 225 (451)
T PRK06305 216 LRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=8.3e-11 Score=142.29 Aligned_cols=166 Identities=20% Similarity=0.299 Sum_probs=112.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 911 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 911 (1103)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 568889998877665443222211223433322 46899999999885332
Q ss_pred CCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-C---CCCcHHHHhcc--ccccccCCCCHHHHHHHHHHHHh
Q 001309 912 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P---FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 912 ~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-p---~~Ld~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
..++.+..+++.+... .+-+|| |++. + ..+++.+++|| ..++.+..|+.+.|.+||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2344555566655421 223444 5543 3 35778999998 44678899999999999999988
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 986 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 986 ~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
...+. ++..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 76654 55667788887764 455665555443
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=8.8e-11 Score=141.10 Aligned_cols=187 Identities=21% Similarity=0.244 Sum_probs=131.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999998752 223456899999999999999999998732
Q ss_pred ----------cEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 863 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 863 ----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
.++.++...- .+-..++.+...+... ...|++|||+|.| + ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----t-------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----T-------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----C-------HHHHHHHH
Confidence 1233322110 1123455555443221 2359999999988 2 12334444
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++.. +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++-...++..+.++++. ++..+..|+..+.| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 444442 345677777777899999999997 688999999999999999988887654 45667888888877 66
Q ss_pred HHHHHHHHHHHhh
Q 001309 1008 SDLKNLCVTAAHC 1020 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~~ 1020 (1103)
+++.++++.|...
T Consensus 213 R~alnlLdqai~~ 225 (535)
T PRK08451 213 RDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777665543
No 156
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=8.2e-11 Score=140.89 Aligned_cols=184 Identities=21% Similarity=0.299 Sum_probs=126.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 45899999999999999998853 2344568999999999999999999988641
Q ss_pred -----------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 864 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 864 -----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
++.++.+. ..+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 11222110 11223355555544432 34799999999882 12234455
Q ss_pred hhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 929 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 929 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
..++.. +..+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...+++.+++..++. ++..+..|+..+.|. .
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-M 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 555442 244566666677788888999998 478899999999999999999887654 445577788887764 4
Q ss_pred HHHHHHHHHH
Q 001309 1008 SDLKNLCVTA 1017 (1103)
Q Consensus 1008 ~DL~~L~~~A 1017 (1103)
+++.++++.+
T Consensus 215 r~al~~Ldkl 224 (486)
T PRK14953 215 RDAASLLDQA 224 (486)
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 157
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=1.5e-10 Score=142.46 Aligned_cols=231 Identities=19% Similarity=0.230 Sum_probs=136.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 866 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~ 866 (1103)
..+|++++|++.....+...+.. . .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35899999999998887665531 1 13579999999999999999997655 357899
Q ss_pred EecCccc-------cccccccHHH----HHHHHHH----------HHhcCCeEEEEccccccccCCCCCchhHHHHHHHH
Q 001309 867 ISMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 925 (1103)
Q Consensus 867 v~~s~L~-------s~~~G~~e~~----i~~lF~~----------A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~ 925 (1103)
++|..+. ..+++..... .+..+.. ......++|||||++.| +...+..+..+++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987652 1122211100 0000000 01223579999999988 3334444444444
Q ss_pred hHHhhhcC-----------------CcccCCccEEEEEe-cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc
Q 001309 926 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 926 ~LL~~ldg-----------------l~~k~~~~VlVIaT-TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~ 987 (1103)
.-...+.. +....+..+++|++ |+.+..+++++++||. .+.+++++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32111000 00112234566654 5668889999999995 67888899999999999998875
Q ss_pred ccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 001309 988 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1066 (1103)
Q Consensus 988 ~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~ 1066 (1103)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. ........|+.+|+.+++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~----------~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA----------GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh----------ccCCCCeeECHHHHHHHhCC
Confidence 432 3444555555542 333333444444322222110 00 00112357899999999875
Q ss_pred h
Q 001309 1067 V 1067 (1103)
Q Consensus 1067 v 1067 (1103)
-
T Consensus 430 ~ 430 (615)
T TIGR02903 430 S 430 (615)
T ss_pred C
Confidence 3
No 158
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=9.6e-11 Score=134.37 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=107.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 869 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-------~~fi~v~~ 869 (1103)
...|.+|+|++++|..|.-.+.. ....++||.|++|||||++|++++..+. .+|. .+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 34789999999999999776542 2235799999999999999999987762 2332 111
Q ss_pred C-------c---------------------------cccccccccHHHHHHHHHHHH---------hcCCeEEEEccccc
Q 001309 870 S-------S---------------------------ITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDS 906 (1103)
Q Consensus 870 s-------~---------------------------L~s~~~G~~e~~i~~lF~~A~---------~~~PsILfIDEID~ 906 (1103)
. . -.+..+|.. .+...|.... +...++||||||+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 0 0 001111110 0111121111 11237999999998
Q ss_pred cccCCCCCchhHHHHHHHHhHHhhh--cCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCCC-HHHHHHHHHH
Q 001309 907 MLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRV 982 (1103)
Q Consensus 907 L~~~r~~~~~~~~l~~vl~~LL~~l--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~ 982 (1103)
+ ++..+..+..++++-...+ +|.....+.++++|+|.|+.+ .+.++++.||...+.+..|+ .+.|.+|++.
T Consensus 156 L-----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 156 L-----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQ 230 (350)
T ss_pred C-----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHh
Confidence 8 4344444444444322222 444444457899999988765 69999999999999999998 5999999988
Q ss_pred HH
Q 001309 983 IL 984 (1103)
Q Consensus 983 ll 984 (1103)
..
T Consensus 231 ~~ 232 (350)
T CHL00081 231 RT 232 (350)
T ss_pred hh
Confidence 64
No 159
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.3e-10 Score=142.07 Aligned_cols=190 Identities=22% Similarity=0.170 Sum_probs=131.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------c
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 869 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~-------~ 869 (1103)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 45899999999999999997753 234578999999999999999999999865432111 0
Q ss_pred --------------Ccccccc--ccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHh
Q 001309 870 --------------SSITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 929 (1103)
Q Consensus 870 --------------s~L~s~~--~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~ 929 (1103)
.++.... ...+-..++.+...+... ...|+||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 0110000 011233566776666433 24799999999882 122344555
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 001309 930 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1008 (1103)
Q Consensus 930 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~ 1008 (1103)
.++. .+..+.+|++|+.+..+.+.+++|+ ..+.|..|+.++...+++..+.+++.. ++..++.|+..+.|. .+
T Consensus 155 tLEe----Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-lr 228 (598)
T PRK09111 155 TLEE----PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-VR 228 (598)
T ss_pred HHHh----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 5544 2355777777777788889999998 678999999999999999998887654 445677788888774 44
Q ss_pred HHHHHHHHH
Q 001309 1009 DLKNLCVTA 1017 (1103)
Q Consensus 1009 DL~~L~~~A 1017 (1103)
++.++++.+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555444
No 160
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.4e-10 Score=142.55 Aligned_cols=182 Identities=21% Similarity=0.253 Sum_probs=128.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++++|++.+++.|...+.. .+-.+++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 36899999999999999998763 1223589999999999999999999998663
Q ss_pred -------------EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001309 864 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 926 (1103)
Q Consensus 864 -------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~ 926 (1103)
++.++.. ....-..++.+...+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 1222211 122344677777666532 23699999999882 123455
Q ss_pred HHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 001309 927 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1005 (1103)
Q Consensus 927 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGy 1005 (1103)
|+..++. .+..+++|++|+.+..+.+++++|+ ..+.|..++.++-...++.++.++... ++..+..++..+.|.
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 5665554 3355777777778888999999998 678888888888888888877775433 445578888888875
Q ss_pred cHHHHHHHHH
Q 001309 1006 SGSDLKNLCV 1015 (1103)
Q Consensus 1006 Sg~DL~~L~~ 1015 (1103)
.. ++.++++
T Consensus 216 lr-~A~~lLe 224 (620)
T PRK14948 216 LR-DAESLLD 224 (620)
T ss_pred HH-HHHHHHH
Confidence 43 3333333
No 161
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=3.1e-10 Score=135.03 Aligned_cols=168 Identities=17% Similarity=0.263 Sum_probs=112.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHH---HHHHHHHHHHhcCCeEEEEccccccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~---~i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
++++|+|++|+|||+|++++++++ +..++.+++.++...+...... .+.. |..-. ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 4678888887766554322111 1111 11111 246799999999883
Q ss_pred cCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHH
Q 001309 909 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 983 (1103)
Q Consensus 909 ~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~l 983 (1103)
++ ...++.+..+++.+... .+.+||++...|. .+++.+.+||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k---~~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YK---EKTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CC---HHHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 22 12344555555555421 2234444444443 45789999984 57788999999999999999
Q ss_pred Hhhccc---CCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 984 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 984 l~~~~l---~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
+...++ .++..+..|+..+.| ..+.|..+|..+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 887543 456667788888876 56677777766653
No 162
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.23 E-value=1.2e-10 Score=133.09 Aligned_cols=165 Identities=20% Similarity=0.276 Sum_probs=105.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 868 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-------g~~--fi~v~ 868 (1103)
..|.+|+|++++++.|.-.+.. ....++||+|+||+|||++|++++..+ +++ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5689999999999988654321 112579999999999999999999988 332 11111
Q ss_pred c-Ccc--------c---------------ccccccc--HHH--------HHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 001309 869 M-SSI--------T---------------SKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENP 914 (1103)
Q Consensus 869 ~-s~L--------~---------------s~~~G~~--e~~--------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~ 914 (1103)
+ .++ . ...+|.. +.. -.+.+..| ..++||||||+.+ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-----~~ 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-----ED 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-----CH
Confidence 0 000 0 0012210 000 01111112 2379999999988 33
Q ss_pred chhHHHHHHHHhHH--hhhcCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001309 915 GEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 984 (1103)
Q Consensus 915 ~~~~~l~~vl~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd~-eeR~eIL~~ll 984 (1103)
..+..+...+++-. ...+|.....+.++++|+|+|+.+ .+.++++.||...+.++.|.. ++|.++++...
T Consensus 143 ~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 34444444444332 223454444567899999999755 689999999998888888876 89999998754
No 163
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.9e-10 Score=134.85 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=123.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------- 863 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 45899999999999999887752 2344679999999999999999999999663
Q ss_pred -------------------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHH
Q 001309 864 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 920 (1103)
Q Consensus 864 -------------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l 920 (1103)
++.++... ...-..++.+.+.+.. ....|+||||+|.|..
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------
Confidence 11111110 0112345555444422 1236999999998821
Q ss_pred HHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHH
Q 001309 921 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 999 (1103)
Q Consensus 921 ~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA 999 (1103)
...+.++..++. .+...++|.+|+.+..+.+++.+|+ ..+.+..++.++-.++++..++.... .++..++.|+
T Consensus 142 -~~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 122334444433 2245566666677788888999998 57889999999988888888877654 3566678888
Q ss_pred HHcCCCcHHHHHHHHHH
Q 001309 1000 NMADGYSGSDLKNLCVT 1016 (1103)
Q Consensus 1000 ~~TeGySg~DL~~L~~~ 1016 (1103)
..+.|.. +.+.+.++.
T Consensus 216 ~~s~g~l-r~a~~~L~k 231 (397)
T PRK14955 216 RKAQGSM-RDAQSILDQ 231 (397)
T ss_pred HHcCCCH-HHHHHHHHH
Confidence 8887743 344444443
No 164
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=2.9e-10 Score=128.22 Aligned_cols=184 Identities=22% Similarity=0.275 Sum_probs=122.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s~ 871 (1103)
+.+|++++|++++++.+...+.. + ..+++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999987752 1 123699999999999999999999872 3456665443
Q ss_pred cccccccccHHHHHHH-HHHHHh-----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 872 ITSKWFGEGEKYVKAV-FSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~l-F~~A~~-----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
... ...+... ...+.. ..+.+|+|||+|.+.. ..+ +.+...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~-------~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQ-------QALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHH-------HHHHHHHhcCC----CCCeEE
Confidence 211 1122222 222222 2346999999998821 111 22233333221 234566
Q ss_pred EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 946 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 946 aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
.++|.+..+.+.+.+|+. .+.+..++.++...+++.++.+.++ .++..+..++..+.|.... +.+.++.++
T Consensus 137 l~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~-~~~~l~~~~ 208 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK-AINALQAAA 208 (319)
T ss_pred EEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 677777788888988984 6899999999999999999987665 3566788888888775443 333334433
No 165
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3.4e-10 Score=138.58 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=122.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 866 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~---------- 866 (1103)
..+|++|+|++.+++.|+..+.. .+-++++||+||+|+|||++|+.+|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999987752 2334679999999999999999999999763100
Q ss_pred EecC--------------cccccccc---ccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHH
Q 001309 867 ISMS--------------SITSKWFG---EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 925 (1103)
Q Consensus 867 v~~s--------------~L~s~~~G---~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~ 925 (1103)
-.|. ++. .+-+ ..-..++.+.+.+.. ....|++|||+|.|. ....+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHH
Confidence 0010 000 0001 112345555444421 234699999999882 11234
Q ss_pred hHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCC
Q 001309 926 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1004 (1103)
Q Consensus 926 ~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeG 1004 (1103)
.|+..++.. +..+++|.+|+.+..+.+++.+|+ ..+.+..++.++-...++..+..++. .++..++.|+..+.|
T Consensus 146 aLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 455555442 244666666677788989999998 68899999999988888888877654 356678888888887
Q ss_pred CcH
Q 001309 1005 YSG 1007 (1103)
Q Consensus 1005 ySg 1007 (1103)
..+
T Consensus 221 dlr 223 (620)
T PRK14954 221 SMR 223 (620)
T ss_pred CHH
Confidence 544
No 166
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.20 E-value=5e-11 Score=137.89 Aligned_cols=270 Identities=20% Similarity=0.255 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHH-HHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCCC
Q 001309 714 TLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN-ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIP 792 (1103)
Q Consensus 714 g~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~-df~~a~~eik~~~~sik~~v~~~e~~k~ll~~iip 792 (1103)
.+++.++...+ ..+.++....+...+.....++...++.+-.. .|. +.+... ..+ . .....
T Consensus 8 ~~ta~~~a~~l-~~r~~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~--~~~~~~----------~~~----~-~~~~~ 69 (403)
T COG1221 8 AFTAEAIAEQL-MLRANVSHELNGLGREGDLAKINGRPVIFLPSEAFS--MSELTE----------LQA----L-LPQAR 69 (403)
T ss_pred hhhHHHHHHHH-HHHHHhHHHHHhhhhhhhHHHhcCCCchhHHHHHhh--hhhhhh----------hhh----c-ccchh
Confidence 45666666655 55666555555544445556677777766432 222 000000 000 0 00001
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEe
Q 001309 793 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINIS 868 (1103)
Q Consensus 793 ~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e----lg~~fi~v~ 868 (1103)
+......+.+++|.....+.+++.+.. + .....+|||+|++||||+.+|+.|... .+.||+.+|
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~N 137 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFN 137 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEE
Confidence 111234678899999888888887763 1 122356999999999999999999633 367999999
Q ss_pred cCccccc-----cccc-------cHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc
Q 001309 869 MSSITSK-----WFGE-------GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 936 (1103)
Q Consensus 869 ~s~L~s~-----~~G~-------~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~ 936 (1103)
|+.+... .||. ....-..+|+.|.. ++||+|||+.| ++..++.+.+++++....--|-..
T Consensus 138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHhCcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCC
Confidence 9875433 2332 12233346666655 89999999988 667788888888876655444344
Q ss_pred cCCccEEEEEecCCC--CCCcH--HHHhccccccccCCCCHHHHHH----HHHHHHhh----cccCCccc----HHHHHH
Q 001309 937 KDKERVLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELASDVD----LEGIAN 1000 (1103)
Q Consensus 937 k~~~~VlVIaTTN~p--~~Ld~--aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~----~~l~~dvd----l~~LA~ 1000 (1103)
.....|++|++|+.. +.+-. .+.+|. ..+.+.+|...+|.. ++++++.. .......+ +..+-.
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 456889999999742 23333 444432 236677888777744 45555544 22221111 222222
Q ss_pred H-cCCCcHHHHHHHHHHHHhhhhH
Q 001309 1001 M-ADGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 1001 ~-TeGySg~DL~~L~~~Aa~~air 1023 (1103)
. .+| +.++|+++++.++..+..
T Consensus 289 y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 289 YDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCCC-cHHHHHHHHHHHHHHhcc
Confidence 2 223 557999999988876643
No 167
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=6.8e-10 Score=119.83 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=95.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
+.++||||||+|||+|++++++..+..++. ... . ....+ ....+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~-----~------~~~~~-----~~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF-----F------NEEIL-----EKYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh-----h------chhHH-----hcCCEEEEeccccc--------h
Confidence 579999999999999999999888754322 000 0 01111 12379999999965 1
Q ss_pred hHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC--CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhccc-CC
Q 001309 917 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEEL-AS 991 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~l-~~ 991 (1103)
...+..+++.+. ...+.+||+++..|.. + +.+++|+. .++.+..|+.+++..+++..+....+ .+
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 234444444443 1244677777655543 5 88999984 36889999999999999988876544 35
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHH
Q 001309 992 DVDLEGIANMADGYSGSDLKNLCVT 1016 (1103)
Q Consensus 992 dvdl~~LA~~TeGySg~DL~~L~~~ 1016 (1103)
+..++.|+....+ +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 6667888888765 44455554443
No 168
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=1.7e-10 Score=112.35 Aligned_cols=141 Identities=40% Similarity=0.619 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccH
Q 001309 805 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE 881 (1103)
Q Consensus 805 G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e 881 (1103)
|.+...+.+...+.. ....+++|+||||+|||+++++++..+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 445566666665431 134579999999999999999999998 889999998775543222111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC--CCcH
Q 001309 882 KY---VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDE 956 (1103)
Q Consensus 882 ~~---i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~ 956 (1103)
.. ....+..+....+.+|+|||++.+. .........++..+. ... ....++.+|++++... .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhh-----HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcCh
Confidence 11 1222334445568999999999771 111122222222221 111 1235688899998776 7888
Q ss_pred HHHhccccccccC
Q 001309 957 AVVRRLPRRLMVN 969 (1103)
Q Consensus 957 aLlrRF~~~I~l~ 969 (1103)
.+.+||+.++.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 9999998666554
No 169
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.4e-10 Score=138.86 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=124.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 864 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f------------ 864 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 45899999999999999887752 22345689999999999999999999985422
Q ss_pred -------------EEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhH
Q 001309 865 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 927 (1103)
Q Consensus 865 -------------i~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~L 927 (1103)
+.++... ...-..++.+...+.. ....||||||+|.|. ....+.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222110 1112334554443332 234699999999882 1223445
Q ss_pred HhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 001309 928 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1006 (1103)
Q Consensus 928 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGyS 1006 (1103)
+..++.. +..+++|.+++..+.+.+.+++|+ ..+.|..++..+...+++..+.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555442 245677777777788888999998 578899999999999999888776543 45557788888877 4
Q ss_pred HHHHHHHHHH
Q 001309 1007 GSDLKNLCVT 1016 (1103)
Q Consensus 1007 g~DL~~L~~~ 1016 (1103)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 4455444443
No 170
>PRK05642 DNA replication initiation factor; Validated
Probab=99.19 E-value=1.1e-09 Score=119.63 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=103.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
+.++|+||+|+|||+|++++++++ +..++.++..++... ...+...... ..+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCC---
Confidence 579999999999999999999765 567788887665432 1122222222 268999999977322
Q ss_pred CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcc
Q 001309 914 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 988 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~ 988 (1103)
...++.+..+++.+. ...+.+||+++..|. .+.+.+++||. ..+.+..|+.++|.++++.......
T Consensus 113 ~~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 113 ADWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred hHHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 123444555555543 123456676665553 23688999984 5677899999999999996555543
Q ss_pred c-CCcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 989 L-ASDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 989 l-~~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
+ .++..++.|+...++ +.+.+..+++
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 3 356667778887765 4445555443
No 171
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.15 E-value=7.4e-11 Score=138.63 Aligned_cols=169 Identities=27% Similarity=0.359 Sum_probs=117.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 872 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L- 872 (1103)
..+|++|+|.......+.+.+.. +.+....|||.|.+||||..+|++|-+.. +.||+.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999999988888876652 12334679999999999999999997766 789999999763
Q ss_pred ----ccccccccHHH--------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCc
Q 001309 873 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 940 (1103)
Q Consensus 873 ----~s~~~G~~e~~--------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~ 940 (1103)
.+..||..... -...|+.|.. +.||+|||..| +..-|..+.+++++-...--|-...-+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 44555532111 2234555544 79999999888 5566778888888765554454444568
Q ss_pred cEEEEEecCCC--CC-----CcHHHHhccccccccCCCCHHHHHH----HHHHHHhh
Q 001309 941 RVLVLAATNRP--FD-----LDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK 986 (1103)
Q Consensus 941 ~VlVIaTTN~p--~~-----Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~ 986 (1103)
.|+||||||+. +. +-+.+.=|+ .++.+.+|...+|.+ +.++++.+
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k 436 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDK 436 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHH
Confidence 89999999973 11 222222255 467888899888765 44445543
No 172
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.14 E-value=1.1e-09 Score=118.73 Aligned_cols=167 Identities=19% Similarity=0.338 Sum_probs=104.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHH-HHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~-~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
..++||||+|+|||+|.+|+++++ +..++.+++.++...+...... .+.. |....+ ...+|+||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc
Confidence 459999999999999999998875 5678888887765443221111 1111 222222 4579999999998422
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHh
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
...++.+..+++.+... .+.+||++...|. .+++.+.+||. ..+.+..|+.+.|.+|++....
T Consensus 113 ---~~~q~~lf~l~n~~~~~---------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 ---QRTQEELFHLFNRLIES---------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---HHHHHHHHHHHHHHHHT---------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhh---------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 12355556666655422 3345666555554 45688999874 4788999999999999999988
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 986 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 986 ~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
..++. ++..++.|+...++ +.++|..++..-.
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 86655 45556777777654 5566666655443
No 173
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=1e-09 Score=134.79 Aligned_cols=182 Identities=20% Similarity=0.259 Sum_probs=128.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 36899999999999999998762 234466999999999999999999998753
Q ss_pred -----------cEEEEecCccccccccccHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhH
Q 001309 863 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 927 (1103)
Q Consensus 863 -----------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~vl~~L 927 (1103)
+++.+++.. ......++.+...+...+ ..|++|||+|.|- ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 233333221 111334666665554322 3599999999882 1233455
Q ss_pred HhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 001309 928 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1006 (1103)
Q Consensus 928 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGyS 1006 (1103)
+..++.. +...++|++|+.+..+-+++++|+ ..+.|..++.++-..+++..+.++++. ++..+..|+..+.|..
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM 216 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 5555542 345677777777789999999998 679999999999999999988887654 4445788888887644
Q ss_pred HHHHHHHHH
Q 001309 1007 GSDLKNLCV 1015 (1103)
Q Consensus 1007 g~DL~~L~~ 1015 (1103)
+++.++++
T Consensus 217 -r~al~~Le 224 (614)
T PRK14971 217 -RDALSIFD 224 (614)
T ss_pred -HHHHHHHH
Confidence 34444433
No 174
>PHA02244 ATPase-like protein
Probab=99.13 E-value=7.2e-10 Score=126.99 Aligned_cols=129 Identities=19% Similarity=0.308 Sum_probs=84.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc----cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 912 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~----L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~ 912 (1103)
.+|||+||||||||++|+++|..++.+|+.++.-. +.+ +..........-|..|.+ ..++|||||++.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 46999999999999999999999999999998421 111 111111122223444433 4589999999977
Q ss_pred CCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-----------CCCcHHHHhccccccccCCCCH
Q 001309 913 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 973 (1103)
Q Consensus 913 ~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRF~~~I~l~lPd~ 973 (1103)
.+..+..+..++......+.+-......++.+|+|+|.+ ..|++++++|| ..+.+..|+.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 223333444444322211112122234679999999973 57899999999 5788999983
No 175
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=1.1e-09 Score=125.41 Aligned_cols=164 Identities=17% Similarity=0.260 Sum_probs=102.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 865 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-------g~~fi------ 865 (1103)
.|..|+|+++++..|.-.+.. ....++||.|++|+|||+|+++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 377899999999887554432 112479999999999999999999777 22221
Q ss_pred ---EEecC-------------------cc-----ccccccccH--HH--------HHHHHHHHHhcCCeEEEEccccccc
Q 001309 866 ---NISMS-------------------SI-----TSKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 866 ---~v~~s-------------------~L-----~s~~~G~~e--~~--------i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
..+|. ++ ....+|... .. -.+++..| ..++||||||+.|
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC-
Confidence 00000 00 001222211 00 00122222 2389999999988
Q ss_pred cCCCCCchhHHHHHHHHhHH--hhhcCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001309 909 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 984 (1103)
Q Consensus 909 ~~r~~~~~~~~l~~vl~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd~-eeR~eIL~~ll 984 (1103)
++..+..+..++.+-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3333444444443321 122343333456799999998765 799999999998888988875 88999998753
No 176
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.7e-09 Score=122.63 Aligned_cols=200 Identities=21% Similarity=0.265 Sum_probs=130.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCcccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 876 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-----~fi~v~~s~L~s~~ 876 (1103)
.+.+.++..+++...+...+. ...|.+++|+||||||||.+++.++.++.- .++.+||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 378899999999887664333 123356999999999999999999998843 38999996533221
Q ss_pred ---------------ccc-cHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCC
Q 001309 877 ---------------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 939 (1103)
Q Consensus 877 ---------------~G~-~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~ 939 (1103)
.|. .......+++.... ....||++||+|.|....+ .++..+....... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~----~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN----K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc----c
Confidence 111 12233334444333 3457889999999965432 3444444332222 4
Q ss_pred ccEEEEEecCCC---CCCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHcCCC--cHHHH
Q 001309 940 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGY--SGSDL 1010 (1103)
Q Consensus 940 ~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~~~---~l~~dvdl~~LA~~TeGy--Sg~DL 1010 (1103)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|-..|++...... ...++..+..+|....-. ..+--
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 778999999876 478889988764 468899999999999999987652 222344455555444322 33334
Q ss_pred HHHHHHHHhhhhHH
Q 001309 1011 KNLCVTAAHCPIRE 1024 (1103)
Q Consensus 1011 ~~L~~~Aa~~aire 1024 (1103)
..+|+.|+..|-++
T Consensus 235 idilr~A~eiAe~~ 248 (366)
T COG1474 235 IDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHhh
Confidence 46677777666544
No 177
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.5e-09 Score=121.59 Aligned_cols=173 Identities=18% Similarity=0.292 Sum_probs=116.3
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecC
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 870 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~--------fi~v~~s 870 (1103)
+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 2344678999999999999999999987432 2333221
Q ss_pred ccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 871 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
.+..+ .-..++.+...+.. ....|++||++|.| + ....+.|+..++. ++..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----~-------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----T-------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----C-------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 11111 12235555554432 23469999999988 2 1233455555554 335566776
Q ss_pred ecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH
Q 001309 947 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1008 (1103)
Q Consensus 947 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~ 1008 (1103)
+|+.++.+.+++++|+ ..+.+..|+.++-..+++..+.. .++..+..++..+.|..+.
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPGK 186 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHHH
Confidence 7777899999999999 68899999998887777655431 2334456677777664443
No 178
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=9.2e-10 Score=136.20 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=107.4
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 860 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el------------------ 860 (1103)
.|.+|+|++.++..|.-.+.. ....+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999887654432 112479999999999999999999887
Q ss_pred -----------------CCcEEEEecCcccccccccc--HHHH--------HHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 861 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 861 -----------------g~~fi~v~~s~L~s~~~G~~--e~~i--------~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
..+|+.+.+.......+|.. +..+ ..++..| ..+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 24666666554433444432 1111 1112222 2379999999988 3
Q ss_pred CchhHHHHHHHHhHH--hhhcCCcccCCccEEEEEecCCC-CCCcHHHHhccccccccCCCC-HHHHHHHHHHHHh
Q 001309 914 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 985 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL--~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~ll~ 985 (1103)
...+..+..++++-. ...+|.....+.++++|+|+|+. ..+.++++.||+..+.++.|. .+++.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 333444444443321 12233333345779999999965 468899999999777776654 6778888876543
No 179
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.09 E-value=2.6e-10 Score=129.24 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=99.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccccH----------HHHHHHHHHHHhcCCeEEEEccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 904 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~--~~G~~e----------~~i~~lF~~A~~~~PsILfIDEI 904 (1103)
++|||.||||||||++|+.+|..++.+++.+++...... ++|... ......+..|.+ .+.+|++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998654332 333211 122334555554 4588999999
Q ss_pred cccccCCCCCchhHHHHHHHHh-HHhhhcC--CcccCCccEEEEEecCCCC------------CCcHHHHhccccccccC
Q 001309 905 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG--LRTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 969 (1103)
Q Consensus 905 D~L~~~r~~~~~~~~l~~vl~~-LL~~ldg--l~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRF~~~I~l~ 969 (1103)
|.. .+..+..+..+++. -...+.+ -.-.....++||||+|+.. .++++++.||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 34444455555542 0111211 1111335799999999853 57899999997778899
Q ss_pred CCCHHHHHHHHHHHH
Q 001309 970 LPDAPNREKIIRVIL 984 (1103)
Q Consensus 970 lPd~eeR~eIL~~ll 984 (1103)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999987764
No 180
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=4.9e-10 Score=130.29 Aligned_cols=201 Identities=24% Similarity=0.276 Sum_probs=137.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 872 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L- 872 (1103)
...+.+|+|....+.++.+.+... ......|||.|.+||||..+|++|-+.. +.||+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 567789999999999988877631 2233579999999999999999998776 689999999764
Q ss_pred ----ccccccccHHHHHHHHHHHHhcC--------CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCc
Q 001309 873 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 940 (1103)
Q Consensus 873 ----~s~~~G~~e~~i~~lF~~A~~~~--------PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~ 940 (1103)
.+..||. .++.|.-|.... .+.||+|||..| +...|..+.+++++--.+--|-...-+.
T Consensus 287 esLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 4455663 344555444332 279999999888 5677888888888765444444333467
Q ss_pred cEEEEEecCCCCCCcHHHHh---------ccccccccCCCCHHHHHH----HHHHHHhhc----cc-C---CcccHHHHH
Q 001309 941 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAKE----EL-A---SDVDLEGIA 999 (1103)
Q Consensus 941 ~VlVIaTTN~p~~Ld~aLlr---------RF~~~I~l~lPd~eeR~e----IL~~ll~~~----~l-~---~dvdl~~LA 999 (1103)
.|.|||+||+ +|..++.. |+ .++.+.+|...+|.+ +.++|+++. +. . +...++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 8999999997 44444444 44 356677788877754 444555442 22 1 122233333
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 001309 1000 NMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1000 ~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
...---+.++|++++++|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 3332235589999999999855
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.08 E-value=1.1e-09 Score=116.39 Aligned_cols=186 Identities=24% Similarity=0.317 Sum_probs=127.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C----CcEEEEecCcc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSSI 872 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-g----~~fi~v~~s~L 872 (1103)
..+.||+|.++..+.|.-... .| +. ++++|.||||+|||+-+.++|+++ | --+.++|+++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~-----------~g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK-----------EG-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH-----------cC-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 467899999999999877554 12 22 489999999999999999999998 3 23567777663
Q ss_pred ccccccccHHHHHHHHHHHH-hcCC---eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec
Q 001309 873 TSKWFGEGEKYVKAVFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 948 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~-~~~P---sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT 948 (1103)
.+- +--...++ .|..-+ ..+| .||++||+|++ ..+.++++++.++-.. ....+..++
T Consensus 90 RGI--DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFalaC 150 (333)
T KOG0991|consen 90 RGI--DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALAC 150 (333)
T ss_pred ccc--HHHHHHHH-HHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhhh
Confidence 321 11111222 333322 2233 59999999999 4567888888876442 335678889
Q ss_pred CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 949 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 949 N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
|..+.+-+.+.+|+ ..+.+...+..+-..-+....+.+.+. .+.-++.+....+|-....|.+|-...
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 99999989999987 455666666666555455555555544 556678888888888877777775544
No 182
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.07 E-value=2.2e-10 Score=134.63 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=138.1
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 873 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~-- 873 (1103)
.+.+++|....++++.+.+.. +......|||+|++||||..+|++|-... +.||+.+||..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 566899999999999887763 12223579999999999999999997766 6799999997643
Q ss_pred ---cccccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 874 ---SKWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 874 ---s~~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
+..||... ..-...|+.|.. +.||||||..| +...|..+.+++++-....-|-...-+.+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 33555322 122335666555 89999999988 4456667777777655444444444567899
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----cc-CCcccHHHHHHHcC-CC-
Q 001309 944 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD-GY- 1005 (1103)
Q Consensus 944 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~----~l-~~dvdl~~LA~~Te-Gy- 1005 (1103)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++|+++. +. ...+.-+.++.+.. .+
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999873 23444555577 578899999888876 555555542 11 23344445554443 22
Q ss_pred -cHHHHHHHHHHHHhhhhHH
Q 001309 1006 -SGSDLKNLCVTAAHCPIRE 1024 (1103)
Q Consensus 1006 -Sg~DL~~L~~~Aa~~aire 1024 (1103)
+.++|+|++++++...-..
T Consensus 358 GNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 358 GNVRELENVVERAVILSEGP 377 (464)
T ss_pred hHHHHHHHHHHHHHhcCCcc
Confidence 3467777777777655443
No 183
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.5e-09 Score=122.23 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=120.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE--
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI-- 867 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~-------fi~v-- 867 (1103)
...|++++|++.+.+.|...+.. .+-++.+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999998763 2344679999999999999999999998551 1100
Q ss_pred --ec-----------Cccc--cccccc---------cHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHH
Q 001309 868 --SM-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 919 (1103)
Q Consensus 868 --~~-----------s~L~--s~~~G~---------~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~ 919 (1103)
.| +++. ....+. .-..++.+..... .....|++|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------ 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C------
Confidence 11 1111 000000 1123343333222 223469999999998 2
Q ss_pred HHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHH
Q 001309 920 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 999 (1103)
Q Consensus 920 l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA 999 (1103)
....+.++..++.. +.+.++|..|+.++.+.+++++|+ ..+.+++|+.++-.++++....... .++..+..++
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 12234455555542 244566666777888899999999 6899999999999999988543322 2244467788
Q ss_pred HHcCCCcHHHHH
Q 001309 1000 NMADGYSGSDLK 1011 (1103)
Q Consensus 1000 ~~TeGySg~DL~ 1011 (1103)
..+.|.....+.
T Consensus 228 ~~s~G~pr~Al~ 239 (351)
T PRK09112 228 QRSKGSVRKALL 239 (351)
T ss_pred HHcCCCHHHHHH
Confidence 888776554443
No 184
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.05 E-value=1.1e-09 Score=125.46 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=113.9
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----
Q 001309 804 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----- 875 (1103)
Q Consensus 804 ~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----- 875 (1103)
+|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 2 iG~S~~m~~~~~~~~~~------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 45555556665555421 1123569999999999999999997665 579999999875332
Q ss_pred cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec
Q 001309 876 WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 948 (1103)
Q Consensus 876 ~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT 948 (1103)
.||... ......|..|. .++||||||+.| +...+..+.+++++-.....|.....+.++.+|++|
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 222110 01122344443 489999999998 434444444444432211112112224678999999
Q ss_pred CCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----ccC--CcccHHHHHHHcC---CCcHH
Q 001309 949 NRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA--SDVDLEGIANMAD---GYSGS 1008 (1103)
Q Consensus 949 N~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~----~l~--~dvdl~~LA~~Te---GySg~ 1008 (1103)
+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++.+. ... ..+..+.+..... .-+.+
T Consensus 142 ~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvr 220 (329)
T TIGR02974 142 NADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVR 220 (329)
T ss_pred hhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHH
Confidence 753 245567777883 46788888777755 444544432 111 1233333333222 22457
Q ss_pred HHHHHHHHHHhhh
Q 001309 1009 DLKNLCVTAAHCP 1021 (1103)
Q Consensus 1009 DL~~L~~~Aa~~a 1021 (1103)
+|++++++|+..+
T Consensus 221 EL~n~i~~~~~~~ 233 (329)
T TIGR02974 221 ELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHHHHhC
Confidence 7888887776543
No 185
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.02 E-value=8.8e-09 Score=110.55 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=134.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
.+.+.+|+|.+.+++.|.+.... |.+ ..|.++|||+|..|||||+|++|+.++. +..+++|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999886543 333 3477899999999999999999998887 6778888876653
Q ss_pred cccccccHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+-.+++..+..+ .-|||.|++- | ..+. . ....+...++|--...+.+|+|.||+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~gd-~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLS--F----EEGD-D----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCC--C----CCCc-h----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2445566655443 4799999983 1 1111 1 122344566776666789999999999865
Q ss_pred CCcH----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhcccCC-cccH----HHHHHHcCCC
Q 001309 953 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL----EGIANMADGY 1005 (1103)
Q Consensus 953 ~Ld~----------------------aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~-dvdl----~~LA~~TeGy 1005 (1103)
.|.+ .+..||+..+.|.+++.++..+|+..+.++..+.- +..+ .+.|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4432 23339999999999999999999999999887663 3222 2344445577
Q ss_pred cHHHHHHHHH
Q 001309 1006 SGSDLKNLCV 1015 (1103)
Q Consensus 1006 Sg~DL~~L~~ 1015 (1103)
||+--.+.++
T Consensus 266 SGR~A~QF~~ 275 (287)
T COG2607 266 SGRVAWQFIR 275 (287)
T ss_pred ccHhHHHHHH
Confidence 7765444443
No 186
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=1.4e-09 Score=124.45 Aligned_cols=161 Identities=25% Similarity=0.368 Sum_probs=108.4
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--ccccccc
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEG 880 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~--s~~~G~~ 880 (1103)
++|.++.+..+...+.. ..++||.||||+|||+||+++|..++.+|+.+.|..-. +..+|..
T Consensus 26 ~~g~~~~~~~~l~a~~~----------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA----------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc----------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 56666666665554431 24799999999999999999999999999999996422 1222221
Q ss_pred HHHH----HHHHHHHHh-cCC---eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc-ccCCccEEEEEecC--
Q 001309 881 EKYV----KAVFSLASK-IAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-- 949 (1103)
Q Consensus 881 e~~i----~~lF~~A~~-~~P---sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~-~k~~~~VlVIaTTN-- 949 (1103)
.-.. ...|..... .-. +|+++|||++. ++..+..+..++++....+.+.. ..-+..++||+|+|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 1110 000000000 001 49999999865 55666777777777666666666 55567899999999
Q ss_pred ---CCCCCcHHHHhccccccccCCC-CHHHHHHHHHHHH
Q 001309 950 ---RPFDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 984 (1103)
Q Consensus 950 ---~p~~Ld~aLlrRF~~~I~l~lP-d~eeR~eIL~~ll 984 (1103)
....+++++++||...+.++.| +.++...++....
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 4567899999999888999999 4544555544443
No 187
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.9e-08 Score=117.06 Aligned_cols=167 Identities=20% Similarity=0.320 Sum_probs=113.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
.+.++||||.|.|||+|++|++++. +..++.+....+...++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 34577777666555443322222223444444 4579999999998544
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC---CcHHHHhcccc--ccccCCCCHHHHHHHHHHHHh
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~--~I~l~lPd~eeR~eIL~~ll~ 985 (1103)
.. .++....+++.+... .+-+|+.+-..|.. +.+.+++||.. ++.+.+|+.+.|..|++....
T Consensus 191 ~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 366666777766521 33455555555654 55899999854 778899999999999999777
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 986 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 986 ~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
...+. ++..+..+|..... +.++|..++...
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l 290 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRL 290 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 65554 55566777777653 455555555443
No 188
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.01 E-value=4.6e-09 Score=127.00 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=104.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEE---EecCccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FIN---ISMSSITSKWF 877 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~-fi~---v~~s~L~s~~~ 877 (1103)
.|.|++.+|..+.-.+..... .....+...+...+|||+|+||||||++|+++++..... |+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~--~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH--KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc--cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 688999998777554432110 001111112233479999999999999999999887432 322 12222211111
Q ss_pred cc---cHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhh--cCCcccCCccEEEEEecCCC
Q 001309 878 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 878 G~---~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~l--dgl~~k~~~~VlVIaTTN~p 951 (1103)
.. ++..+ .+.+..| ..++++|||++.+ +...+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 1112222 2489999999988 3334444444443322111 34333445789999999975
Q ss_pred C-------------CCcHHHHhcccccc-ccCCCCHHHHHHHHHHHHhh
Q 001309 952 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 952 ~-------------~Ld~aLlrRF~~~I-~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+ .|++++++||+..+ ..+.|+.+.+.+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 2 69999999998754 44789999999999987653
No 189
>PRK09087 hypothetical protein; Validated
Probab=99.00 E-value=6.4e-09 Score=113.25 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=93.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
+.++|+||+|+|||+|+++++...++.++... .+.. .++..... .+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 35999999999999999999988766544332 2111 11111111 589999999761 22
Q ss_pred hHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC--C-CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-
Q 001309 917 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--D-LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 990 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~-Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~l~- 990 (1103)
++.+..+++.+.. ..+.+||+++..|. . ..+.+++||. ..+.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4455555555542 13456666665543 2 3578999884 688999999999999999999876553
Q ss_pred CcccHHHHHHHcCC
Q 001309 991 SDVDLEGIANMADG 1004 (1103)
Q Consensus 991 ~dvdl~~LA~~TeG 1004 (1103)
++..++.|+....+
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 56667888888764
No 190
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=5.6e-09 Score=121.17 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=119.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-----------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------- 865 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi----------- 865 (1103)
..++++|+|++.+++.|.+.+.. .+-++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35789999999999999988763 234567999999999999999999998832110
Q ss_pred E---E-ec-----------Cccccccc---cc--------cHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCc
Q 001309 866 N---I-SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 915 (1103)
Q Consensus 866 ~---v-~~-----------s~L~s~~~---G~--------~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~ 915 (1103)
. + .| +++.--.. +. .-..++.+-..+. ...+.|++|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 01 11110000 10 1123454444432 235679999999988 2
Q ss_pred hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccH
Q 001309 916 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 995 (1103)
Q Consensus 916 ~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl 995 (1103)
....+.|+..++. ++...++|.+|+.++.+.+++++|+ ..+.+..|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 2233455555544 2345677788888888999999998 68899999999998888775321 122223
Q ss_pred HHHHHHcCCCcHHHHH
Q 001309 996 EGIANMADGYSGSDLK 1011 (1103)
Q Consensus 996 ~~LA~~TeGySg~DL~ 1011 (1103)
..++..+.|..+..+.
T Consensus 222 ~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 222 AALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHHcCCCHHHHHH
Confidence 5677777775554433
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.6e-09 Score=130.42 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=135.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 868 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~ 868 (1103)
.++-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|.+. +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456789999988888887752 223567899999999999999999876 56788898
Q ss_pred cCccc--cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-hHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 869 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 869 ~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~-~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
+..+. .+|-|+.|..++.+..+..+..+.||||||||.+.+.....+. ..+.+ ++.-.+ .+..+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL---------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL---------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH---------hcCCeEEE
Confidence 88765 3588999999999999999988999999999999877654332 22222 111111 23668888
Q ss_pred EecCC-----CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCC
Q 001309 946 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1005 (1103)
Q Consensus 946 aTTN~-----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-----~dvdl~~LA~~TeGy 1005 (1103)
++|+. ...-|+++-||| ..+.+..|+.++-..|++.+-...... .+..+...+..+.-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346789999999 578899999999999999876653222 344455555555544
No 192
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.99 E-value=1e-09 Score=133.45 Aligned_cols=206 Identities=20% Similarity=0.226 Sum_probs=123.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
..+|++++|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3578899999999888888775311 223579999999999999999998875 5799999998763
Q ss_pred cc-----cccccHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc
Q 001309 874 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 941 (1103)
Q Consensus 874 s~-----~~G~~e~~-------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~ 941 (1103)
.. .||..... ....|..| ..++||||||+.| +...+..+.+++++-.....+-....+.+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 32 12211100 01123333 3489999999998 33344444444332111111111111246
Q ss_pred EEEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhhcc----cC---CcccHHHHHHHcC
Q 001309 942 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----LA---SDVDLEGIANMAD 1003 (1103)
Q Consensus 942 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~~~~----l~---~dvdl~~LA~~Te 1003 (1103)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|. .++++++.+.. .. ++..+..|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899998753 245566666773 5667777766653 45566665422 11 2222333433332
Q ss_pred CCcHHHHHHHHHHHHhhhhH
Q 001309 1004 GYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 1004 GySg~DL~~L~~~Aa~~air 1023 (1103)
.-+.++|+++++.|+..+-.
T Consensus 411 PGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRS 430 (534)
T ss_pred CChHHHHHHHHHHHHHhCCC
Confidence 23557888888888765433
No 193
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.99 E-value=1.5e-09 Score=131.04 Aligned_cols=202 Identities=21% Similarity=0.260 Sum_probs=122.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 874 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s 874 (1103)
.+|++++|.....+.+.+.+.. + .....+|||+|++||||+++|++|.+.. +.||+.+||..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------Y-----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 4688999999988888887753 1 1123579999999999999999998765 67999999987532
Q ss_pred -----ccccccHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc
Q 001309 875 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 941 (1103)
Q Consensus 875 -----~~~G~~e~--------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~ 941 (1103)
..||..+. ....+|+.|.. +.||||||+.| +...+..+.+++++-....-|-....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332111 12235555543 89999999998 44445555555544221111211122356
Q ss_pred EEEEEecCCCC-------CCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhccc--CCcccHHH----------H
Q 001309 942 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL--ASDVDLEG----------I 998 (1103)
Q Consensus 942 VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~l--~~dvdl~~----------L 998 (1103)
+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++++++.+... .-....+. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999997642 2333444455 357788888877765 45555554321 00122122 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 001309 999 ANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 999 A~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
....=-.+.++|++++++++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2221122457888888877653
No 194
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.99 E-value=2.4e-09 Score=129.42 Aligned_cols=202 Identities=20% Similarity=0.286 Sum_probs=122.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 866 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e-----------lg~~fi~ 866 (1103)
.+|++++|.....+.+.+.+.. + .....+|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------Y-----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688999999988888887753 1 112357999999999999999999877 3679999
Q ss_pred EecCcccc-----ccccccHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcC
Q 001309 867 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 933 (1103)
Q Consensus 867 v~~s~L~s-----~~~G~~e~--------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldg 933 (1103)
+||..+.. ..||..+. .-..+|+.|.. +.||||||+.| +...+..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 23332211 11235555543 89999999998 444455555555442221112
Q ss_pred CcccCCccEEEEEecCCCC-------CCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc--cCCcccHH----
Q 001309 934 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE--LASDVDLE---- 996 (1103)
Q Consensus 934 l~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~--l~~dvdl~---- 996 (1103)
-....+.++.+|++|+..- .+.+.+.-|+ ..+.+.+|...+|.+ ++++++.+.. ......-+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 2122245689999997641 2333444465 357788898887755 5556665421 11111111
Q ss_pred ------HHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 997 ------GIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 997 ------~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
.|....=-.+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111111122457888888887753
No 195
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.97 E-value=2.7e-09 Score=122.21 Aligned_cols=201 Identities=18% Similarity=0.170 Sum_probs=119.1
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 874 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s- 874 (1103)
.|++++|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 46678899888888888775311 123579999999999999999997665 47999999987532
Q ss_pred ----ccccccHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 875 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 875 ----~~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
.+||.... .....|..| ..++|||||||.| +...+..+..++++-.....+-....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 22332110 011234333 3489999999998 3333444444333221111111111234689
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----cC--CcccHHHHHHHcC---
Q 001309 944 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA--SDVDLEGIANMAD--- 1003 (1103)
Q Consensus 944 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~----l~--~dvdl~~LA~~Te--- 1003 (1103)
||+||+.. ..+.+.+..||. .+.+.+|...+|.+ ++++++.+.. .. ..+.-+.+.....
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99998763 356677777883 46788888888755 4555543321 11 1233333333222
Q ss_pred CCcHHHHHHHHHHHHhh
Q 001309 1004 GYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 1004 GySg~DL~~L~~~Aa~~ 1020 (1103)
--+.++|++++++|+..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 22446777777777653
No 196
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.97 E-value=1.6e-08 Score=113.60 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=82.4
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC------------CCCCcHHHHhccc
Q 001309 896 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 963 (1103)
Q Consensus 896 PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 963 (1103)
|+||||||+|.| +-..-.++++.+. . +-.+ +||.+||+ |+-++..++.|+
T Consensus 292 pGVLFIDEvHmL-----DIE~FsFlnrAlE-------s----e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DIECFSFLNRALE-------S----ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hHHHHHHHHHHhh-------c----ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999887 2111122222221 1 1133 45556664 678888999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 001309 964 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1042 (1103)
Q Consensus 964 ~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~ 1042 (1103)
.+|...+.+.++-.+|++...+.+.+. ++..++.|+..-...|-+--.+|+.-|...|-++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 678888889999999999998887654 5556777777665555544445544444333322
Q ss_pred CCCCCCccccccccHHHHHHHHHHhc
Q 001309 1043 SPPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1043 ~~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
....+..+|++.|.+-+.
T Consensus 416 --------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 --------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred --------CCCeeehhHHHHHHHHHh
Confidence 224678888888876554
No 197
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.9e-09 Score=119.42 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=120.1
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 868 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~----------fi~v~ 868 (1103)
.|++|+|++.+++.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 588999999999999998863 2334689999999999999999999987322 11112
Q ss_pred cCccc---------ccc--------cc--------ccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHH
Q 001309 869 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 919 (1103)
Q Consensus 869 ~s~L~---------s~~--------~G--------~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~ 919 (1103)
.+++. ++. .| -.-..++.+...+.. ....|++||++|.| +
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~------ 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----N------ 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----C------
Confidence 22221 000 00 001235555444433 23479999999988 2
Q ss_pred HHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHH
Q 001309 920 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 999 (1103)
Q Consensus 920 l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA 999 (1103)
....+.|+..++.. + +.++|.+|+.++.|.+++++|+ ..+.|..|+.++-.++++........ +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 12334555555442 2 3466777788899999999998 78999999999998888876432211 22346788
Q ss_pred HHcCCCcHHHHHH
Q 001309 1000 NMADGYSGSDLKN 1012 (1103)
Q Consensus 1000 ~~TeGySg~DL~~ 1012 (1103)
....|-.+..+..
T Consensus 209 ~~a~Gs~~~al~~ 221 (314)
T PRK07399 209 ALAQGSPGAAIAN 221 (314)
T ss_pred HHcCCCHHHHHHH
Confidence 8888766655443
No 198
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.96 E-value=5.1e-09 Score=131.00 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=123.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 874 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s 874 (1103)
..|++++|....++.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46889999998888887766531 1123479999999999999999998765 67999999987532
Q ss_pred -----ccccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccE
Q 001309 875 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 942 (1103)
Q Consensus 875 -----~~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~V 942 (1103)
..+|... ......|+.|. .++||||||+.| +...+..+.+++++-.....+-....+.++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 11123444443 489999999988 333444444444332111111111223578
Q ss_pred EEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcC
Q 001309 943 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMAD 1003 (1103)
Q Consensus 943 lVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~----l----~~dvdl~~LA~~Te 1003 (1103)
.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+ +++.++.+.. . .+...+..|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999764 23444455565 356788899888866 4555554421 1 11222333333322
Q ss_pred CCcHHHHHHHHHHHHhhhh
Q 001309 1004 GYSGSDLKNLCVTAAHCPI 1022 (1103)
Q Consensus 1004 GySg~DL~~L~~~Aa~~ai 1022 (1103)
-.+.++|++++++|+..+-
T Consensus 592 PGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 592 PGNVRELENVIERAVLLTR 610 (686)
T ss_pred CCcHHHHHHHHHHHHHhCC
Confidence 2355788888888875443
No 199
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.96 E-value=3.6e-09 Score=127.98 Aligned_cols=203 Identities=17% Similarity=0.237 Sum_probs=123.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 875 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~ 875 (1103)
.+.+++|....++.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 4567899998888888877631 1223579999999999999999998875 579999999876432
Q ss_pred -----cccccHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 876 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 876 -----~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
.||.... .....|+.|. .++|||||||.| +...+..+.+++++-....-|-....+.++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 2332110 0112344443 489999999998 3334444444443321111111112235789
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c-CCcccHHHHHHHcC---C
Q 001309 944 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L-ASDVDLEGIANMAD---G 1004 (1103)
Q Consensus 944 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~----l-~~dvdl~~LA~~Te---G 1004 (1103)
||++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+.. . ...+.-+.+..... -
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999864 24556666676 356788888887755 4445554421 1 11233333333322 2
Q ss_pred CcHHHHHHHHHHHHhhhh
Q 001309 1005 YSGSDLKNLCVTAAHCPI 1022 (1103)
Q Consensus 1005 ySg~DL~~L~~~Aa~~ai 1022 (1103)
.+.++|++++++|+..+.
T Consensus 404 GNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 404 GNVRELEHVISRAALLAR 421 (509)
T ss_pred CcHHHHHHHHHHHHHhcC
Confidence 355788888888876543
No 200
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.95 E-value=2e-09 Score=133.57 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=121.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc-
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 873 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~- 873 (1103)
.+|++++|.....+.+.+.+.... .....|||+|++||||+++|++|.+.. +.+|+.+||..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468899999888887777665311 122469999999999999999998875 4799999998753
Q ss_pred ----ccccccc----HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 874 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 874 ----s~~~G~~----e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+-....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2234321 00011123333 3489999999998 434444444444332211111111112468899
Q ss_pred EecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----cC---CcccHHHHHHHcCCCcH
Q 001309 946 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA---SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 946 aTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~----l~---~dvdl~~LA~~TeGySg 1007 (1103)
+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+ +++.++.+.. .. ++..+..|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 999863 23444555566 357788899888854 4555554321 11 22223333333312355
Q ss_pred HHHHHHHHHHHhhh
Q 001309 1008 SDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~~a 1021 (1103)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 78888888877543
No 201
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.95 E-value=9.9e-09 Score=107.97 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=97.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccccHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 890 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------------------fi~v~~s~L~s~~~G~~e~~i~~lF~~ 890 (1103)
.+..+||+||+|+|||++|+++++.+.+. +..+.... . ......++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 44679999999999999999999987432 22221110 0 0122455555655
Q ss_pred HHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccc
Q 001309 891 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 966 (1103)
Q Consensus 891 A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 966 (1103)
+.. ....||+|||+|.|. ....+.|+..++.. +....+|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 543 235799999999882 11234455555442 244667777777789999999998 589
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCC
Q 001309 967 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1005 (1103)
Q Consensus 967 ~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGy 1005 (1103)
.+.+|+.++..++++.. ++ ++..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888776 23 345577777777664
No 202
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.6e-09 Score=117.10 Aligned_cols=116 Identities=25% Similarity=0.414 Sum_probs=80.9
Q ss_pred CCccc-ccCcHHHHHHHHHHHhcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-
Q 001309 798 VTFDD-IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS- 874 (1103)
Q Consensus 798 ~sfdd-I~G~e~ik~~L~e~V~~pl~~pe~f~~-~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s- 874 (1103)
.-+++ ++|++..|+.|--+|....+|-..... ..+.-...+|||.||+|||||.||+.+|+.+++||..-++..|..
T Consensus 57 ~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 57 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred HHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 34445 789999988886666543332211111 112222357999999999999999999999999999999988764
Q ss_pred cccccc-HHHHHHHHHHHH----hcCCeEEEEccccccccCCCC
Q 001309 875 KWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 875 ~~~G~~-e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~ 913 (1103)
.|+|+. |..+..+...|. +...+||||||||.+..+..+
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 477765 445555555542 345699999999999765543
No 203
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.94 E-value=3.9e-10 Score=120.08 Aligned_cols=46 Identities=41% Similarity=0.586 Sum_probs=36.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+|.+|.|++..|..|.-+..- .+++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999776641 2689999999999999999998665
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=5.1e-09 Score=100.70 Aligned_cols=127 Identities=33% Similarity=0.468 Sum_probs=80.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccccHHHHHHHHHHHHhcCCeEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 899 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~---fi~v~~s~L~s~--------------~~G~~e~~i~~lF~~A~~~~PsIL 899 (1103)
..++|+||||||||++++++|..+... ++.+++...... ...........++..++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999764 888887653321 122345567788999998888999
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-CCCCcHHHHhccccccccCCC
Q 001309 900 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 971 (1103)
Q Consensus 900 fIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~l~lP 971 (1103)
+|||++.+..... .............. .........+|+++|. ....+..+.+|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998842211 11100000000000 0012255788888886 444555555577766665543
No 205
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=2.5e-10 Score=113.88 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=67.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc------cccccc--cHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------SKWFGE--GEKYVKAVFSLASKIAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~------s~~~G~--~e~~i~~lF~~A~~~~PsILfIDEID~L~~ 909 (1103)
+|||+||||||||+||+.+|+.++.+++.+++.... +.+.-. ........+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 589999999999999999999999999999886522 111100 00000011111111 4689999999875
Q ss_pred CCCCCchhHHHHHHHHhHHhhhcCCcc---------cCCc------cEEEEEecCCCC----CCcHHHHhcc
Q 001309 910 RRENPGEHEAMRKMKNEFMVNWDGLRT---------KDKE------RVLVLAATNRPF----DLDEAVVRRL 962 (1103)
Q Consensus 910 ~r~~~~~~~~l~~vl~~LL~~ldgl~~---------k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 962 (1103)
+ ..+++.++..++.-.. .... ++.+|+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 2233333333322110 0111 499999999988 9999999998
No 206
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.92 E-value=5.1e-09 Score=126.95 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=122.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
..+|++++|.....+.+.+.+... . .....|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------A-----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 458999999988877777765421 1 112469999999999999999986654 4799999998764
Q ss_pred cc-----cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc
Q 001309 874 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 941 (1103)
Q Consensus 874 s~-----~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~ 941 (1103)
.. .||... .....+|+.|. .+.||||||+.| +...+..+.++++.-...-.|-....+.+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123455544 389999999998 33444444444433211111111112356
Q ss_pred EEEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhh----ccc-CCcccHHHHHHHcC--
Q 001309 942 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-- 1003 (1103)
Q Consensus 942 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~----~~l-~~dvdl~~LA~~Te-- 1003 (1103)
+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.+ ... ...+..+.+.....
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 235566777773 47788888877764 34444443 211 11233333333332
Q ss_pred -CCcHHHHHHHHHHHHhhh
Q 001309 1004 -GYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1004 -GySg~DL~~L~~~Aa~~a 1021 (1103)
.-+.++|++++.+|+..+
T Consensus 419 WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 125578888888887643
No 207
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.90 E-value=2.2e-08 Score=123.26 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 863 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~ 863 (1103)
.-|++++|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578899999999998887752 1489999999999999999999988543
No 208
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.89 E-value=1.3e-08 Score=125.00 Aligned_cols=142 Identities=19% Similarity=0.305 Sum_probs=94.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccccH--HHHH--------HHHHHHHhcCCeEEEEcc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK--------AVFSLASKIAPSVVFVDE 903 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~L~s~~~G~~e--~~i~--------~lF~~A~~~~PsILfIDE 903 (1103)
..+|||.|+||||||++|++++..+. .+|+.+.........+|... ..+. .++..| ..++|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 35799999999999999999999875 46888876433333444321 0000 011112 237999999
Q ss_pred ccccccCCCCCchhHHHHHHHHhHHhhh--cCCcccCCccEEEEEecCCCC---CCcHHHHhccccccccC-CCCHHHHH
Q 001309 904 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNRE 977 (1103)
Q Consensus 904 ID~L~~~r~~~~~~~~l~~vl~~LL~~l--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~I~l~-lPd~eeR~ 977 (1103)
|+.+ ++..+..+..++++-.+.+ +|.....+.+++||+|+|..+ .|.++++.||...+.+. +|+.++|.
T Consensus 93 i~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 93 ANLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred hhhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9988 4344444444444333222 244333456789999999865 79999999998766554 56788899
Q ss_pred HHHHHHHh
Q 001309 978 KIIRVILA 985 (1103)
Q Consensus 978 eIL~~ll~ 985 (1103)
+|++.++.
T Consensus 168 eil~~~~~ 175 (589)
T TIGR02031 168 EIVRRERC 175 (589)
T ss_pred HHHHHHHH
Confidence 99988763
No 209
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.89 E-value=1.3e-08 Score=114.96 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=98.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 861 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-------------------- 861 (1103)
++.+.+.....+...+.. . .+-++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------S---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------c---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 456666777776665542 1 12223599999999999999999999986
Q ss_pred ----CcEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcC
Q 001309 862 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 933 (1103)
Q Consensus 862 ----~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldg 933 (1103)
..++.++.++..... .....++.+-...... ...||+|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 467777776644321 1233455544444333 347999999999831 233344444333
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001309 934 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 980 (1103)
Q Consensus 934 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 980 (1103)
++.+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+....
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 3467899999999999999999998 56777775554444433
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.88 E-value=3e-08 Score=114.32 Aligned_cols=166 Identities=23% Similarity=0.307 Sum_probs=109.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEecC------
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMS------ 870 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-~~fi~v~~s------ 870 (1103)
..|.-++|++..+..|.-... ...-.++||.|+.|||||+++++|+.-+. ...+. .|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 356778999999888754322 22235799999999999999999998872 11111 110
Q ss_pred --------------------------ccccccccccHH----------HHHH--------HHHHHHhcCCeEEEEccccc
Q 001309 871 --------------------------SITSKWFGEGEK----------YVKA--------VFSLASKIAPSVVFVDEVDS 906 (1103)
Q Consensus 871 --------------------------~L~s~~~G~~e~----------~i~~--------lF~~A~~~~PsILfIDEID~ 906 (1103)
.+...-.+.++. .++. ++..| ..+|+||||+..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A---nRGIlYvDEvnl 155 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA---NRGILYVDEVNL 155 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc---cCCEEEEecccc
Confidence 011111122222 1211 11122 237999999988
Q ss_pred cccCCCCCchhHHHHHHHHhH--HhhhcCCcccCCccEEEEEecCCC-CCCcHHHHhccccccccCCC-CHHHHHHHHHH
Q 001309 907 MLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRV 982 (1103)
Q Consensus 907 L~~~r~~~~~~~~l~~vl~~L--L~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~l~lP-d~eeR~eIL~~ 982 (1103)
| ...-+..+..++.+- ..+.+|+.-..+.++++|+|+|+. ..|-+.++.||+..+.+..| +.++|.+|++.
T Consensus 156 L-----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 156 L-----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred c-----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 7 333444555555553 445677777778899999999986 47889999999988888665 58899999988
Q ss_pred HHhh
Q 001309 983 ILAK 986 (1103)
Q Consensus 983 ll~~ 986 (1103)
.+.-
T Consensus 231 ~~~f 234 (423)
T COG1239 231 RLAF 234 (423)
T ss_pred HHHh
Confidence 7765
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=1.1e-07 Score=105.06 Aligned_cols=191 Identities=14% Similarity=0.183 Sum_probs=115.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEe--cCc---------ccccccc-----cc-HHHHHHHH----HHHHhc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGA-NFINIS--MSS---------ITSKWFG-----EG-EKYVKAVF----SLASKI 894 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~-~fi~v~--~s~---------L~s~~~G-----~~-e~~i~~lF----~~A~~~ 894 (1103)
..++|+||+|+|||++++.++..+.. .+..+. ... +.. .+| .. ......+. ......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~-~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAA-DFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHH-HcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999998752 222211 111 111 111 11 11122221 223345
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC--CCCC----cHHHHhcccccccc
Q 001309 895 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMV 968 (1103)
Q Consensus 895 ~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRF~~~I~l 968 (1103)
.+.+|+|||++.+- .... ..+..+... .......+.|+.+..+ ...+ ...+.+|+...+.+
T Consensus 123 ~~~vliiDe~~~l~--------~~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 123 KRALLVVDEAQNLT--------PELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CCeEEEEECcccCC--------HHHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeC
Confidence 67899999999872 1111 111122111 1111223333444332 1111 23466688778899
Q ss_pred CCCCHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCC
Q 001309 969 NLPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRAS 1043 (1103)
Q Consensus 969 ~lPd~eeR~eIL~~ll~~~~-----l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~ 1043 (1103)
+..+.++..+++...+.... ..++..++.|+..+.|+.. .|..+|..|...+..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~------------------- 249 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE------------------- 249 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc-------------------
Confidence 99999999999998887532 2345678889999999865 4889998887765543
Q ss_pred CCCCCccccccccHHHHHHHHHHhc
Q 001309 1044 PPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1044 ~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
....|+.+++..++..++
T Consensus 250 -------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 -------EKREIGGEEVREVIAEID 267 (269)
T ss_pred -------CCCCCCHHHHHHHHHHhh
Confidence 224699999999998765
No 212
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=1.3e-09 Score=107.80 Aligned_cols=118 Identities=31% Similarity=0.416 Sum_probs=70.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-cccccc----cHHHHHHHHHHHH-hcCCeEEEEccccccccC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGE----GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s-~L~-s~~~G~----~e~~i~~lF~~A~-~~~PsILfIDEID~L~~~ 910 (1103)
++||+|+||+|||++|+++|+.++..|..|.+. ++. ++..|. .+. ..|...+ -.-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988774 322 111111 000 0000000 000269999999865
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC-----CCcHHHHhccc
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 963 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRF~ 963 (1103)
++..|.++.+++++..+.++|....-+.+++||||.|+.+ .|+++++.||-
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5667788888888888888877666678899999999865 78899999983
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=3.4e-08 Score=113.18 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=102.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccccHHHHHHHHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 889 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------------------------fi~v~~s~L~s~~~G~~e~~i~~lF~ 889 (1103)
+.++.+||+||+|+|||++|+++|+.+.+. ++.+....- +. .-.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 345789999999999999999999998542 222211100 00 012345666655
Q ss_pred HHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 001309 890 LASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 965 (1103)
Q Consensus 890 ~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 965 (1103)
.+.. ....|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQ 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-ee
Confidence 5543 235699999999982 2344556666555 3467889999999999999999999 56
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 001309 966 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 966 I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~D 1009 (1103)
+.|.+|+.++-.+.+...... ..+.....++..+.|-.+..
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLRA 200 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHHH
Confidence 899999999888777654311 23334456666777655433
No 214
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.85 E-value=3.2e-09 Score=110.52 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=79.1
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 875 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~---- 875 (1103)
|+|.+..++.+.+.+.... ..+.+|||+|++||||+++|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA------------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 3566666666666655311 122579999999999999999998765 579999999875332
Q ss_pred -cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEe
Q 001309 876 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 876 -~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaT 947 (1103)
.||... .....+|+.|.. ++||||||+.| +...|..+.+++++-....-+-....+.+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 333211 112357777766 99999999999 44455555555554322222222222468999999
Q ss_pred cCC
Q 001309 948 TNR 950 (1103)
Q Consensus 948 TN~ 950 (1103)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 986
No 215
>PRK04132 replication factor C small subunit; Provisional
Probab=98.84 E-value=2.9e-08 Score=124.72 Aligned_cols=157 Identities=19% Similarity=0.220 Sum_probs=117.7
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccccHHHHHHHHHHHHhcC------CeEEE
Q 001309 834 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 900 (1103)
Q Consensus 834 ~p~~gVLL~G--PpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~------PsILf 900 (1103)
-|.-+-++.| |++.|||++|+++|+++ +.+++.+|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 4555567889 99999999999999998 56899999987432 235666555443322 25999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001309 901 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 980 (1103)
Q Consensus 901 IDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 980 (1103)
|||+|.| +...+.++ +..++. .+.++.+|++||.++.+.+++++|+ ..+.|..|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQnAL-------Lk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQQAL-------RRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHHHHH-------HHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999999 32233333 333332 2357889999999999999999998 78899999999999999
Q ss_pred HHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 001309 981 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 981 ~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
+.++.++++. ++..+..++..++|-....|..|
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9888876654 56678999999998776666444
No 216
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.84 E-value=2.9e-08 Score=116.66 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=85.9
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecC--
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS-- 870 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~--~-----fi~v~~s-- 870 (1103)
++++.+.+...+.+...+. ..++++|+||||||||++|+++|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 3455666666666655443 1258999999999999999999998842 1 2233221
Q ss_pred --cccccc----cccc--HHHHHHHHHHHHhc--CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcC-------
Q 001309 871 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 933 (1103)
Q Consensus 871 --~L~s~~----~G~~--e~~i~~lF~~A~~~--~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldg------- 933 (1103)
++...+ .|.. ...+..+...|... .|.|||||||++-- ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhcccccccccc
Confidence 121111 1100 11233445566553 47999999998651 12223333332221
Q ss_pred -----------CcccCCccEEEEEecCCCC----CCcHHHHhccccccccCC
Q 001309 934 -----------LRTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 934 -----------l~~k~~~~VlVIaTTN~p~----~Ld~aLlrRF~~~I~l~l 970 (1103)
-.-..+.++.||||+|..+ .+|.+++|||. .+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 0112357899999999876 79999999994 455543
No 217
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3e-07 Score=115.18 Aligned_cols=128 Identities=23% Similarity=0.325 Sum_probs=89.4
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 873 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~--p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~-- 873 (1103)
+.|+|++++...+-+++.. .+.++.+ |...+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 3588999999988888874 2233444 56669999999999999999999998 4679999998632
Q ss_pred ----cc---cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccC-------C
Q 001309 874 ----SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------K 939 (1103)
Q Consensus 874 ----s~---~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~-------~ 939 (1103)
+. |.|.. ...++.+..++.+.+||+|||||.- ...+++.|+..++.....+ -
T Consensus 634 skligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred hhccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeec
Confidence 22 33332 3446666667777799999999864 1334555555555332221 2
Q ss_pred ccEEEEEecCC
Q 001309 940 ERVLVLAATNR 950 (1103)
Q Consensus 940 ~~VlVIaTTN~ 950 (1103)
.+++||+|+|.
T Consensus 700 kN~I~IMTsn~ 710 (898)
T KOG1051|consen 700 KNAIFIMTSNV 710 (898)
T ss_pred cceEEEEeccc
Confidence 67899999865
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=3.9e-08 Score=118.31 Aligned_cols=168 Identities=19% Similarity=0.288 Sum_probs=100.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHH----HhcCCeEEEEccccccccCCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRE 912 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~ 912 (1103)
+-+||+||||-|||+||+.||+++|+.++++|+++-.+.. .....+..+...- ...+|.+|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCC-----
Confidence 3489999999999999999999999999999998743320 1111222222111 1257999999999842
Q ss_pred CCchhHHHHHHHHhHHh----hhcCCcccC-------C---ccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHH
Q 001309 913 NPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 978 (1103)
Q Consensus 913 ~~~~~~~l~~vl~~LL~----~ldgl~~k~-------~---~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~e 978 (1103)
...+.+ ++..++. +..|-.... + -.--|||.+|....-.-.-+|-|...+.|..|...-..+
T Consensus 400 ---~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 400 ---PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ---cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHH
Confidence 112222 2222222 111211100 0 112478888876543223334688889999999888778
Q ss_pred HHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 979 IIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 979 IL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
=|+.++..+++. +...+..|+..|++ ||+..++.-..
T Consensus 476 RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQf 513 (877)
T KOG1969|consen 476 RLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQF 513 (877)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHH
Confidence 888888877764 22334555555544 55555554443
No 219
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=5.4e-08 Score=111.69 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=102.1
Q ss_pred CcccccC-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E-----------
Q 001309 799 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I----------- 865 (1103)
Q Consensus 799 sfddI~G-~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f-i----------- 865 (1103)
.|+.|.| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+-+.- .
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4778777 88899999887752 33456789999999999999999999874321 0
Q ss_pred ----EEecCccccccc-c--ccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 866 ----NISMSSITSKWF-G--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 866 ----~v~~s~L~s~~~-G--~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
.-+.+++.--.. | ..-..++.+...+.. ....|++|||+|.+ + ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----~-------~~a~NaLLK~LEE- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----T-------ASAANSLLKFLEE- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----C-------HHHHHHHHHHhcC-
Confidence 000011100000 1 112345555444332 23469999999988 2 2234556666554
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHH
Q 001309 935 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 982 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ 982 (1103)
++..+++|.+|+.+..+.+++++|+ ..+.+..|+.++-.++++.
T Consensus 137 ---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 ---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 3456778888888899999999999 6889999998887666653
No 220
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.81 E-value=1.4e-08 Score=106.07 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCccccccccccHHHHHHHHHHH----HhcCCeEEEEccccc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 906 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~----~fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~ 906 (1103)
|...+||.||+|+|||.+|+++|..+.. +++.++|+++... +..+..+..++..+ .....+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999987661 11111222222111 111225999999999
Q ss_pred cccCCCCCchhHHHHHHHHhHHhhhcCCccc-------CCccEEEEEecCCC
Q 001309 907 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 951 (1103)
Q Consensus 907 L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k-------~~~~VlVIaTTN~p 951 (1103)
..+. .+......-..+.+.|+..+++-.-. +-.++++|+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8654 22233333445666777766532221 12578999999853
No 221
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.8e-08 Score=110.63 Aligned_cols=74 Identities=32% Similarity=0.591 Sum_probs=62.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccccc-HHHHHHHHHHH----HhcCCeEEEEccccccccC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s-~~~G~~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~ 910 (1103)
.+|||.||+|+|||.||+.+|+-+++||.-++|..|.. .|+|+. |..+..++..| .+.+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999999864 477764 55667777666 3456799999999999743
No 222
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.80 E-value=1.4e-07 Score=111.76 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=94.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-cccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 878 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~s-~L~s~~~G 878 (1103)
.++|.+++.+.+...+.. ..++||+||||||||++|++++...+. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 467888888877665531 247999999999999999999998742 44444432 11223333
Q ss_pred cc-HHHH--HHHHHHHHhc---CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 879 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 879 ~~-e~~i--~~lF~~A~~~---~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.. -... .+-|...... ...+||+|||.++ ++..+..+..++++-.....+-..+-+.++++++| |+..
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1222211111 2249999999866 44555555556655444443333333344555554 6422
Q ss_pred ---CCcHHHHhccccccccCCCC-HHHHHHHHHHH
Q 001309 953 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 983 (1103)
Q Consensus 953 ---~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~l 983 (1103)
...+++..||...+.+++|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24468999998788888887 45556777653
No 223
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.80 E-value=9.1e-08 Score=109.16 Aligned_cols=94 Identities=19% Similarity=0.322 Sum_probs=52.4
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC------------CCCCcHHHHhccc
Q 001309 896 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 963 (1103)
Q Consensus 896 PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 963 (1103)
|+||||||+|.| +-..-.++.+++ +. +-.+ +||.+||+ |+-++..++.|+
T Consensus 279 pGVLFIDEvHmL-----DiEcFsfLnral-------Es----~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-----DIECFSFLNRAL-------ES----ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGS-----BHHHHHHHHHHH-------TS----TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhc-----cHHHHHHHHHHh-------cC----CCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 789999999988 211222222222 21 1133 55556664 567888999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 964 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 964 ~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
.++...+++.++-.+|++..++.+.+. ++..++.|+......+-
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SL 385 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSL 385 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-H
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccH
Confidence 688889999999999999999887764 33345555544443343
No 224
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.78 E-value=1.8e-07 Score=104.86 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=111.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccc------cc--------c--ccccHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT------SK--------W--FGEGEKYVKAVFSLA 891 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~L~------s~--------~--~G~~e~~i~~lF~~A 891 (1103)
.++||+|++|+|||++++.++... .+|++.+.++.-- .. + .....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765 2578888775411 00 0 011233344556777
Q ss_pred HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC--CCCCcHHHHhccccccccC
Q 001309 892 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 969 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~l~ 969 (1103)
+..++.+|+|||++.++..... ..+.+++.+... ...-+-+++.+||-.- .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYR-----KQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccHH-----HHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 7888899999999998643321 223333333322 2222345666665432 2355788999994 44444
Q ss_pred CC-CHHHHHHHHHHHHhhcccC------CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 001309 970 LP-DAPNREKIIRVILAKEELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1024 (1103)
Q Consensus 970 lP-d~eeR~eIL~~ll~~~~l~------~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aire 1024 (1103)
.. ..++...++..+.....+. ...-...|-.+++|+.| ++..|+..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 43 2455566777776554432 22223566778888776 8889999999888875
No 225
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=3.5e-08 Score=118.68 Aligned_cols=153 Identities=25% Similarity=0.311 Sum_probs=91.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 861 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---------------- 861 (1103)
..|+++.|+..+++.+.-.+. ...+++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776654332 235799999999999999999986431
Q ss_pred ------------CcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHh
Q 001309 862 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 929 (1103)
Q Consensus 862 ------------~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~ 929 (1103)
.||...+++......+|.....-...+..|.. ++|||||++.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 22332222221111122221112234444544 89999999987 33334444444433221
Q ss_pred hh--cCCcccCCccEEEEEecCCC-----C------------------CCcHHHHhccccccccCCCCHH
Q 001309 930 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 930 ~l--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
.+ .+.....+.++.+|+++|+. . .+...++.||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 11 12222234679999999863 1 4778888899977777766543
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.73 E-value=2.9e-07 Score=100.73 Aligned_cols=184 Identities=20% Similarity=0.288 Sum_probs=131.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecC----
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMS---- 870 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-g--~~fi~v~~s---- 870 (1103)
.+++.+.+.++....|+.+.. .....++|+|||+|+||-+.+.++.+++ | .+=..+...
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 467778888888888877553 1223589999999999999999999887 3 211111110
Q ss_pred ---------ccccc--------ccccc-HHHHHHHHHHHHhcCC---------eEEEEccccccccCCCCCchhHHHHHH
Q 001309 871 ---------SITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 923 (1103)
Q Consensus 871 ---------~L~s~--------~~G~~-e~~i~~lF~~A~~~~P---------sILfIDEID~L~~~r~~~~~~~~l~~v 923 (1103)
.+.+. -.|.. .-.++.+.....+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 01111 12222 2345555555444333 59999999999 44567788888
Q ss_pred HHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 001309 924 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1002 (1103)
Q Consensus 924 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T 1002 (1103)
++... .++.+|..+|....+-+++++|+ ..+.++.|+.++-..++...++++.+. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 77654 56788999999999999999997 678999999999999999999998876 555678889888
Q ss_pred CCCcHHHHHH
Q 001309 1003 DGYSGSDLKN 1012 (1103)
Q Consensus 1003 eGySg~DL~~ 1012 (1103)
+|.-.+.|-.
T Consensus 219 ~~nLRrAllm 228 (351)
T KOG2035|consen 219 NRNLRRALLM 228 (351)
T ss_pred cccHHHHHHH
Confidence 8876665543
No 227
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.73 E-value=3.4e-08 Score=117.20 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=117.6
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 875 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~- 875 (1103)
+.+++|.....+.+.+.+.. + .....+++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 138 ~~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 34566666666666665432 0 1123569999999999999999998765 578999999876322
Q ss_pred ----cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 876 ----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 876 ----~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
.+|... ....+.|..| ..++||||||+.| +...+..+.+++++-.....+.....+.++.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 122110 0001122222 3589999999998 33444444444443221111211222357899
Q ss_pred EEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcCCC
Q 001309 945 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGY 1005 (1103)
Q Consensus 945 IaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~----l----~~dvdl~~LA~~TeGy 1005 (1103)
|+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+.. . .++..+..|....=..
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCC
Confidence 9999764 34566676677 457788899888866 4555554421 1 1222233333333223
Q ss_pred cHHHHHHHHHHHHhhhh
Q 001309 1006 SGSDLKNLCVTAAHCPI 1022 (1103)
Q Consensus 1006 Sg~DL~~L~~~Aa~~ai 1022 (1103)
+.++|++++++|+..+-
T Consensus 357 NvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 357 NVRELENKVKRAVIMAE 373 (445)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 55788888888775443
No 228
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=3.5e-07 Score=104.60 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001309 806 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 863 (1103)
Q Consensus 806 ~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---------------------- 863 (1103)
+....+.|...+.. .+-++.+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34556666665542 2345789999999999999999999988431
Q ss_pred --EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 864 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 864 --fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
++.+... .++. -.-..++.+...+... ...|++||++|.|- ....|.|+..++.
T Consensus 74 PD~~~i~p~--~~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE---- 133 (325)
T PRK06871 74 PDFHILEPI--DNKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE---- 133 (325)
T ss_pred CCEEEEccc--cCCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----
Confidence 1122110 0111 1233556555544332 34699999999982 2234556666555
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 001309 938 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~D 1009 (1103)
++.++++|.+|+.++.+.+++++|+ ..+.+.+|+.++-.+.+..... .+......++..+.|..+..
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHHHH
Confidence 4577899999999999999999999 6788999999888777765431 12223444555566644433
No 229
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=4e-07 Score=104.68 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=100.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------------EEEecCcccccccc-----ccHHHHHHHHHHHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANF----------------INISMSSITSKWFG-----EGEKYVKAVFSLAS 892 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f----------------i~v~~s~L~s~~~G-----~~e~~i~~lF~~A~ 892 (1103)
+.++.+||+||+|+||+++|.++|+.+-+.- ..-+.+++.--... -.-..++.+-..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 4567899999999999999999999884310 00011121100000 11234555554443
Q ss_pred h----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccc
Q 001309 893 K----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 968 (1103)
Q Consensus 893 ~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l 968 (1103)
. ....|++||++|.|- ...-|.|+..++. ++.+.++|.+|+.++.|.+++++|+. .+.+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 2 334699999999982 2344566666655 45778999999999999999999994 6889
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHH
Q 001309 969 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1010 (1103)
Q Consensus 969 ~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL 1010 (1103)
++|+.++..+.+... ... +......++..+.|-.+..+
T Consensus 165 ~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHHH
Confidence 999988877766532 122 23334566677777555443
No 230
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.66 E-value=6.6e-07 Score=107.93 Aligned_cols=228 Identities=21% Similarity=0.234 Sum_probs=143.4
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 872 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~~s~L 872 (1103)
+...+.-..+|..++...+.. ++ -...+.|.|-||||||.++..+...+ .+.|+.+|+-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 556677778887777654432 01 12369999999999999999997765 478899997654
Q ss_pred ccc----------cccccH------HHHHHHHHHH-HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc
Q 001309 873 TSK----------WFGEGE------KYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 935 (1103)
Q Consensus 873 ~s~----------~~G~~e------~~i~~lF~~A-~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~ 935 (1103)
.+. +.|+.. ..+..-|... .+..++||+|||+|.|+.+.+ ..++.+-.++
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 432 222211 1223333311 233468999999999975432 2233333455
Q ss_pred ccCCccEEEEEecCCCCCCcH----HHHhccc-cccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH--H
Q 001309 936 TKDKERVLVLAATNRPFDLDE----AVVRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG--S 1008 (1103)
Q Consensus 936 ~k~~~~VlVIaTTN~p~~Ld~----aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg--~ 1008 (1103)
...+.+++||+.+|..+.... .+-+|++ .++.|.+.+.++..+|+...+..........++-+|+.-...|| +
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 556788999999887543222 3333654 47889999999999999999887643344445556665555555 2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001309 1009 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1071 (1103)
Q Consensus 1009 DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~ 1071 (1103)
.-..+|++|+..+..+.. .. ...-...|++-|+.+|+.++..+.
T Consensus 616 raldic~RA~Eia~~~~~-~~------------------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-KG------------------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-cc------------------cccccceeehHHHHHHHHHHhhhh
Confidence 344677777765554422 00 111224688899999998876654
No 231
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.8e-08 Score=107.86 Aligned_cols=68 Identities=29% Similarity=0.361 Sum_probs=51.5
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
|+|++++|+.+--++..-.++.++-...+-.--|++||..||+|+|||.+|+.+|+-.++||+.+-+.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEAT 84 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEAT 84 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEee
Confidence 89999999888666654444333322222233468999999999999999999999999999877653
No 232
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.65 E-value=1.3e-07 Score=97.74 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001309 805 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 862 (1103)
Q Consensus 805 G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~---------------------- 862 (1103)
|++++.+.|.+.+.. .+-+..+||+||+|+||+++|.++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 678888888887763 344567999999999999999999988722
Q ss_pred -cEEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 863 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 863 -~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
.++.+....-.. .-....++.+...+... ...|++|||+|.| + ....+.|+..++.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~-------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----T-------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----h-------HHHHHHHHHHhcC----
Confidence 233333221100 01234556655555332 3469999999998 2 2333445555544
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001309 938 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
++.++.+|.+|+.++.+.+++++|+ ..+.+..
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 4477999999999999999999998 4555543
No 233
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.64 E-value=9.3e-08 Score=119.80 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=107.3
Q ss_pred HHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHH
Q 001309 781 EFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLA 853 (1103)
Q Consensus 781 e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~---~~----~l~~p~~gVLL~GPpGTGKT~LA 853 (1103)
+....+...+.| .|.|++.+|..|.-.+.........+. .+ .-.+...+|||.|+||||||.+|
T Consensus 439 ~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLA 509 (915)
T PTZ00111 439 MIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLL 509 (915)
T ss_pred HHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHH
Confidence 344445555555 689999999887544322111100000 00 11233457999999999999999
Q ss_pred HHHHHHhC-------CcEEEEecCcccccccc--ccHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHH
Q 001309 854 KAVATEAG-------ANFINISMSSITSKWFG--EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 923 (1103)
Q Consensus 854 kAIA~elg-------~~fi~v~~s~L~s~~~G--~~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~v 923 (1103)
+++++... .++..+.+..... ..+ .++..+ .+.+..|. .++++|||++.| +...+..+.++
T Consensus 510 r~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkm-----s~~~Q~aLlEa 580 (915)
T PTZ00111 510 HYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKC-----HNESRLSLYEV 580 (915)
T ss_pred HHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhC-----CHHHHHHHHHH
Confidence 99988642 3444444433211 000 011000 11222333 389999999988 33334444444
Q ss_pred HHhHHhh--hcCCcccCCccEEEEEecCCC-------------CCCcHHHHhcccccc-ccCCCCHHHHHHHHHHHHh
Q 001309 924 KNEFMVN--WDGLRTKDKERVLVLAATNRP-------------FDLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 924 l~~LL~~--ldgl~~k~~~~VlVIaTTN~p-------------~~Ld~aLlrRF~~~I-~l~lPd~eeR~eIL~~ll~ 985 (1103)
+++-... -.|+...-+.++.||||+|+. -.|++++++||+.++ .++.|+.+.-..|.++++.
T Consensus 581 MEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 581 MEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred HhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 4332221 124444446789999999984 257899999998764 4577887766676666553
No 234
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.64 E-value=1.9e-07 Score=111.67 Aligned_cols=202 Identities=21% Similarity=0.261 Sum_probs=117.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 875 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~ 875 (1103)
.+.+++|.......+.+.+... ......+||.|++|||||++|+++.... +.+|+.++|..+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL------------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH
Confidence 3556777777776666655420 1223569999999999999999998876 579999999876322
Q ss_pred -----cccccHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 876 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 876 -----~~G~~e~-------~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
.+|.... .....|..| ..+.||||||+.| +...+..+.+++++-.....+-....+.++.
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 1221100 001112222 3479999999988 3333444433333221111111111235689
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcCC
Q 001309 944 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADG 1004 (1103)
Q Consensus 944 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~~~----l----~~dvdl~~LA~~TeG 1004 (1103)
+|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.+.. . .++..+..|....=.
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wp 354 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCC
Confidence 99999753 35667777787 356777888766655 5666665421 1 122223333333323
Q ss_pred CcHHHHHHHHHHHHhhh
Q 001309 1005 YSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1005 ySg~DL~~L~~~Aa~~a 1021 (1103)
.+.++|+++++.|+..+
T Consensus 355 gNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 355 GNVRQLENTCRWLTVMA 371 (469)
T ss_pred ChHHHHHHHHHHHHHhC
Confidence 35578888888887644
No 235
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=1.6e-06 Score=100.91 Aligned_cols=238 Identities=21% Similarity=0.250 Sum_probs=147.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc-
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s~- 875 (1103)
.+.|.+..+..+++++..++. ...+..+.+.|.||||||.+...+...+ ....++++|..+...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578899999999998876554 2234579999999999999999886655 235588888753211
Q ss_pred ---------c----ccc-cHHHHHHHHHHHH-hc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCC
Q 001309 876 ---------W----FGE-GEKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 939 (1103)
Q Consensus 876 ---------~----~G~-~e~~i~~lF~~A~-~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~ 939 (1103)
+ .+. .+......|+.-. .. .+-||++||+|.|+.... .++.+ +.+|..+ ..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeee-ehhcccC---Cc
Confidence 1 111 1222233333322 22 367999999999963321 12222 1234443 45
Q ss_pred ccEEEEEecCCCCCCcHHHHh---c---cccccccCCCCHHHHHHHHHHHHhhcccCCc--ccHHHHHHHcCCCcHHHHH
Q 001309 940 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSDLK 1011 (1103)
Q Consensus 940 ~~VlVIaTTN~p~~Ld~aLlr---R---F~~~I~l~lPd~eeR~eIL~~ll~~~~l~~d--vdl~~LA~~TeGySg~DL~ 1011 (1103)
.++++|+.+|..+.-|..+-+ | -+..+.|++++.++..+|+..-+........ ..++..|....|.|| ||+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655544433 2 3567899999999999999999988654433 346778888888887 555
Q ss_pred HH---HHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 001309 1012 NL---CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1073 (1103)
Q Consensus 1012 ~L---~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~ 1073 (1103)
.+ |+.|...+ +.+... ......++....+...+|.++++..++.++-.+.+.
T Consensus 367 kaLdv~R~aiEI~-----E~e~r~-----~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~ 421 (529)
T KOG2227|consen 367 KALDVCRRAIEIA-----EIEKRK-----ILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSA 421 (529)
T ss_pred HHHHHHHHHHHHH-----HHHHhh-----ccccCCCCCCCcccccccchHHHHHHhhhhccChhh
Confidence 43 44443322 211110 001111222222333678899999999888665443
No 236
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=4.9e-07 Score=111.25 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=115.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee---cCcc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-IS---MSSI 872 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~-v~---~s~L 872 (1103)
..++++++++++..+.+...+..... . ..+.+-++|+||||+|||++++.+|.+++..++. ++ +...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 45889999999999998887753111 0 2233459999999999999999999998866543 11 1100
Q ss_pred ccc------------cccccHHHHHHHHHHHHh----------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh
Q 001309 873 TSK------------WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 873 ~s~------------~~G~~e~~i~~lF~~A~~----------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ 930 (1103)
... .+......+..++..|.. ....||||||++.++.. . ......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHHHHHHHHHH--h
Confidence 000 011223344555555542 24579999999987532 1 12222222200 1
Q ss_pred hcCCcccCCccEEEEEecCCCC----------C----CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhccc-----
Q 001309 931 WDGLRTKDKERVLVLAATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL----- 989 (1103)
Q Consensus 931 ldgl~~k~~~~VlVIaTTN~p~----------~----Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l----- 989 (1103)
.+ ....+ +|+++|..+. . |.+++++ |. .+|.|++....+-.+.|+.++..+..
T Consensus 224 ~e----~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 224 VS----IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hc----CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 11 11122 3333332111 1 3467776 44 47899999999988888888876421
Q ss_pred ---CCcccHHHHHHHcCCCcHHHHHHH
Q 001309 990 ---ASDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 990 ---~~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
.....+..|+....|-....|..|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 122456777787777666655554
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=7.7e-07 Score=101.61 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---EEe---------cCcc
Q 001309 806 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NIS---------MSSI 872 (1103)
Q Consensus 806 ~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f-i---~v~---------~s~L 872 (1103)
+..+.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+.- . .+. .+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 35666667665542 23456799999999999999999998873321 0 000 1111
Q ss_pred ccc-----ccc------ccHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 873 TSK-----WFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 873 ~s~-----~~G------~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
.-- ..| -.-..++.+...+...+ -.|++||++|.| + ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----N-------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----C-------HHHHHHHHHHhhC----
Confidence 100 001 11334566655554332 369999999998 2 2234555555554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHH
Q 001309 938 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1011 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~ 1011 (1103)
++.++++|.+|+.++.|.+++++|+ ..+.|..|+.++-...+... .. +..+...++..+.|..+..+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHH
Confidence 3466788888999999999999999 67889999988777666532 22 233345667777776554443
No 238
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=3.6e-07 Score=102.05 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=87.8
Q ss_pred cCCCCCCCCCCCcccccCcHHH---HHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C
Q 001309 788 ADVIPPSDIGVTFDDIGALENV---KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G 861 (1103)
Q Consensus 788 ~~iip~~e~~~sfddI~G~e~i---k~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g 861 (1103)
...+++.-...+|+++...... .....+++.. |... .....+++|+|++|||||+||.+|++++ +
T Consensus 72 ~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 72 NSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred hcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3445554445678876533332 2333333321 2111 1223579999999999999999999986 7
Q ss_pred CcEEEEecCccccccc----cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 862 ANFINISMSSITSKWF----GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 862 ~~fi~v~~s~L~s~~~----G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
.+++.++.+++..... +........++... ....+|+|||+... ..+...++.+..+++....
T Consensus 143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e---~~t~~~~~~l~~iin~r~~-------- 209 (268)
T PRK08116 143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAE---RDTEWAREKVYNIIDSRYR-------- 209 (268)
T ss_pred CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCC---CCCHHHHHHHHHHHHHHHH--------
Confidence 8888888877654321 11111122233222 23469999999642 1122233344444444321
Q ss_pred CCccEEEEEecCCC-CC----CcHHHHhcc---ccccccCCCC
Q 001309 938 DKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPD 972 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p-~~----Ld~aLlrRF---~~~I~l~lPd 972 (1103)
....+|.|||.+ .. ++..+.+|+ ...+.+.-|+
T Consensus 210 --~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 210 --KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred --CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 123467777754 33 456777774 2335555555
No 239
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=7.4e-07 Score=102.61 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=91.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEecCccc---------------
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 873 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f-------------------------i~v~~s~L~--------------- 873 (1103)
+.++.+||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4557899999999999999999999885422 111111000
Q ss_pred ---ccc-----ccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc
Q 001309 874 ---SKW-----FGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 941 (1103)
Q Consensus 874 ---s~~-----~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~ 941 (1103)
+.. -.-.-..++.+...+.. ....|++||++|.|. ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 00112345555544432 223599999999982 2344566666664 4577
Q ss_pred EEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHH
Q 001309 942 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 983 (1103)
Q Consensus 942 VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~l 983 (1103)
+++|.+|+.++.|.+++++|+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 68999999998888887653
No 240
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.54 E-value=5e-07 Score=107.54 Aligned_cols=176 Identities=22% Similarity=0.280 Sum_probs=102.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccccHH-------HHHHHHHHHHhcCCeEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 901 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~-----~~G~~e~-------~i~~lF~~A~~~~PsILfI 901 (1103)
..+||+|++||||+++|+++.... +.+|+.++|..+... .+|.... .....|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 479999999999999999997765 579999999876332 2221100 001122222 3489999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHH
Q 001309 902 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 902 DEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
|||+.| +...+..+..++++-.....+.....+.++.||+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333333333333321111111111123568999999864 24555666666 34778888888
Q ss_pred HHHH----HHHHHHhhccc----C-CcccHH---HHHHHcCCCcHHHHHHHHHHHHhhh
Q 001309 975 NREK----IIRVILAKEEL----A-SDVDLE---GIANMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 975 eR~e----IL~~ll~~~~l----~-~dvdl~---~LA~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
+|.+ +++.++.+... . .....+ .|....=..+.++|++++++|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 8765 44455544211 1 122333 3333322335678888888887644
No 241
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.9e-06 Score=98.41 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001309 806 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 863 (1103)
Q Consensus 806 ~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---------------------- 863 (1103)
+....+.|...+.. .+-++.+||+||.|+||+.+|.++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 35566666665542 3455789999999999999999999987331
Q ss_pred -EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccC
Q 001309 864 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 938 (1103)
Q Consensus 864 -fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~ 938 (1103)
|+.+.... .++.+ .-..++.+-..+... ...|++||++|.|- ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22222110 00111 123455554444332 24699999999982 2344556666655 4
Q ss_pred CccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHH
Q 001309 939 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 982 (1103)
Q Consensus 939 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ 982 (1103)
+.++++|.+|+.++.|.+++++|+ ..+.++.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999999 5788999998887776654
No 242
>PRK12377 putative replication protein; Provisional
Probab=98.51 E-value=5.5e-07 Score=99.46 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=84.6
Q ss_pred hhhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 785 KLLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 785 ~ll~~iip~~e~~~sfddI~G~----e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+....+|+.....+|+++... ..+...+..++.. |.. ...+++|+||||||||+||.||++++
T Consensus 58 ~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 58 ILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred HHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3345556776667789986532 2233333333321 211 23589999999999999999999988
Q ss_pred ---CCcEEEEecCcccccccccc--HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc
Q 001309 861 ---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 935 (1103)
Q Consensus 861 ---g~~fi~v~~s~L~s~~~G~~--e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~ 935 (1103)
+..++.++.+++....-... ......++... ....+|+|||+... +.+...++.+..+++.-+.
T Consensus 126 ~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~---~~s~~~~~~l~~ii~~R~~------ 194 (248)
T PRK12377 126 LAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ---RETKNEQVVLNQIIDRRTA------ 194 (248)
T ss_pred HHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHHHh------
Confidence 67788888777654321100 00111222222 34689999999654 2222333344444443321
Q ss_pred ccCCccEEEEEecCCC-----CCCcHHHHhcc
Q 001309 936 TKDKERVLVLAATNRP-----FDLDEAVVRRL 962 (1103)
Q Consensus 936 ~k~~~~VlVIaTTN~p-----~~Ld~aLlrRF 962 (1103)
...-+|.|||.. ..+.+.+++|+
T Consensus 195 ----~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 195 ----SMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred ----cCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 123456778854 23445555555
No 243
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.50 E-value=1.2e-06 Score=100.83 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=48.1
Q ss_pred Ccc-cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001309 799 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 869 (1103)
Q Consensus 799 sfd-dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------~fi~v~~ 869 (1103)
-|+ ++.|+++.++++.+.+..... +...+.+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 799999999999887764221 11223356899999999999999999999854 6766654
No 244
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.49 E-value=1.7e-06 Score=104.09 Aligned_cols=153 Identities=25% Similarity=0.304 Sum_probs=91.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec----
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISM---- 869 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~----~fi~v~~---- 869 (1103)
..|.++.|...+++.+.-.+ ....+++|+||||+|||+|++.++..+.. ..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36788888877666543211 23368999999999999999999865521 1111110
Q ss_pred --C-----cc-----cc--------ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHh
Q 001309 870 --S-----SI-----TS--------KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 929 (1103)
Q Consensus 870 --s-----~L-----~s--------~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~ 929 (1103)
. .+ .+ ..+|.....-...+..|.. ++|||||++.+ +...++.+++.+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0 00 00 0122211122245555555 89999999876 33334444444433322
Q ss_pred hhc--CCcccCCccEEEEEecCCCC---------------------CCcHHHHhccccccccCCCCHH
Q 001309 930 NWD--GLRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 930 ~ld--gl~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
.+. +.....+.++.+|+|+|+.. .+...++.||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 222 22222357899999999752 4777999999988888887644
No 245
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=98.46 E-value=6.2e-07 Score=78.91 Aligned_cols=68 Identities=31% Similarity=0.479 Sum_probs=59.6
Q ss_pred eeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEec
Q 001309 6 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 76 (1103)
Q Consensus 6 ~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~ 76 (1103)
++||++..||+.|.|++||..+|.|..... ....|+-+|++.-+.|||+.+.++..+.|..||+|.||
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 589999999999999999999999986643 23778888888889999999999999999999999996
No 246
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=7.6e-08 Score=112.46 Aligned_cols=46 Identities=41% Similarity=0.638 Sum_probs=39.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.+|.|+.|++..|..++-... + .+++|++|||||||||||+.+..-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhccc
Confidence 479999999999999987654 2 368999999999999999988543
No 247
>PRK15115 response regulator GlrR; Provisional
Probab=98.45 E-value=1.8e-06 Score=102.51 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=102.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccccHH-------HHHHHHHHHHhcCCeEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 901 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~-----~G~~e~-------~i~~lF~~A~~~~PsILfI 901 (1103)
..++|+|++|||||++|+++.+.. +.+|+.++|..+.... +|.... ....+|.. ...++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEEE
Confidence 469999999999999999998775 5799999998763321 111000 00112222 23489999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHH
Q 001309 902 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 902 DEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
||||.| +...+..+.+++.+-....-|.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 333444444444332211111111223478999999753 13334444455 35678889988
Q ss_pred HHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001309 975 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 975 eR~e----IL~~ll~~~~l--------~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
+|.+ +++.++.+... .++..+..|....=.-+.++|+++++.|+..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8854 44555554210 12233344444432335678888888876543
No 248
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.44 E-value=1.5e-06 Score=107.18 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=41.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
..|+++.|++++++.|...+.. .+++||+||||||||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5789999999999998886652 13799999999999999999998764
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.41 E-value=2.2e-06 Score=94.48 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=67.4
Q ss_pred hhhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 785 KLLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 785 ~ll~~iip~~e~~~sfddI~G~-e~---ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+....+++.....+|+++... +. +...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 56 ~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 56 TFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred HHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3345556766667789986533 22 23333333221 11 112489999999999999999999988
Q ss_pred ---CCcEEEEecCccccccccc---cHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 861 ---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 861 ---g~~fi~v~~s~L~s~~~G~---~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
+..++.++.+++....-.. .......++.... ...+|+|||++..
T Consensus 124 ~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 124 LLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887765432111 1111223333322 4689999999865
No 250
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.41 E-value=1.4e-06 Score=98.05 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=121.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
...|+.|++....++.+.+.... +.. -...+||.|.+||||-.+|++.-... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~Am-----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LAM-----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hhc-----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 45688888887777666554321 111 11359999999999999999876554 7899999997653
Q ss_pred -----cccccccH--HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 874 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 874 -----s~~~G~~e--~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
+..||... +--..+|+.|.. +.+|+|||..| ++.-|..+.+.++.-....-|-...-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 23444332 345678888877 89999999887 4445555555554433222222222246799999
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhh----cccC-CcccHHHHHHHcC-CC--cH
Q 001309 947 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA-SDVDLEGIANMAD-GY--SG 1007 (1103)
Q Consensus 947 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~~----~~l~-~dvdl~~LA~~Te-Gy--Sg 1007 (1103)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.|+.+ .... +..+.+.+-..+. ++ +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99653 23334444466 477888898877754 33333333 2222 3333333333332 22 33
Q ss_pred HHHHHHHHHHHh
Q 001309 1008 SDLKNLCVTAAH 1019 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~ 1019 (1103)
++|.|.+-+|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 667666655543
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.35 E-value=6.7e-07 Score=87.20 Aligned_cols=54 Identities=30% Similarity=0.511 Sum_probs=41.4
Q ss_pred HHHHHHHHhhccCCC-CeEEEEcChhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEeeccC
Q 001309 542 INELFEVALNESKSS-PLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 598 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~-p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l~g---~vvvIgs~~~ 598 (1103)
+..+|+-+.. .. |.||||||+|.+.... ....+.|...+++... +++||+++|+
T Consensus 46 i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 46 IRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 3344444444 44 9999999999977765 6778888888888865 6999999995
No 252
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.34 E-value=2e-06 Score=102.62 Aligned_cols=199 Identities=22% Similarity=0.314 Sum_probs=108.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc--
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 876 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~-- 876 (1103)
.++|.......+.+.+.. + ......++|.|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-L-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-H-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666555432 0 1123479999999999999999998775 5799999998763321
Q ss_pred ---ccccHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 877 ---FGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 877 ---~G~~e~~-------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
+|..... ....|. ....++||||||+.| +...+..+.+++.+-....-+-....+.++.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 2211000 001122 223589999999988 3233333333332211111111111234678999
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhhccc-----CCcccHHHHHHHcC-CC--cH
Q 001309 947 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEEL-----ASDVDLEGIANMAD-GY--SG 1007 (1103)
Q Consensus 947 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~~~~l-----~~dvdl~~LA~~Te-Gy--Sg 1007 (1103)
+|+.. ..+.+.+..|+. .+.+.+|...+|. .+++.++.+... ...+.-+.+..... ++ +.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88753 245567777773 4567777766554 355555544211 01222222222222 22 34
Q ss_pred HHHHHHHHHHHhhh
Q 001309 1008 SDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~~a 1021 (1103)
++|+++++.|+..+
T Consensus 354 reL~~~~~~~~~~~ 367 (463)
T TIGR01818 354 RQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHHHHHHHHhC
Confidence 67777777766544
No 253
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.34 E-value=1.3e-06 Score=97.50 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=104.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 870 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~------fi~v~~s 870 (1103)
...++++++++++...+.++... .+ .+++|+|||||||||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~-lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PG-LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CC-CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 45678899999999888886431 11 2389999999999999999999988543 1223333
Q ss_pred ccccccccccHHHHHHHHHHHHh-------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 871 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~-------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
+-.+ .+. ...--..|..++. ..+..+++||.|.+ ....|.++++++..+. .++.
T Consensus 103 d~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----T~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----TRDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHh-----hHHHHHHHHHHHHHhc-----------cceE
Confidence 2111 111 1112234444442 25679999999998 3345667777665543 5567
Q ss_pred EEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc
Q 001309 944 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 988 (1103)
Q Consensus 944 VIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~ 988 (1103)
++..+|.+..+.+++.+||. .+.+.+.+...-...+.+++..+.
T Consensus 164 F~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcch
Confidence 77788999999999999984 566666666666666666655443
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.34 E-value=4e-07 Score=91.37 Aligned_cols=106 Identities=24% Similarity=0.483 Sum_probs=64.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ ..++|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999988774 466666766532 3344444 5699999999998 2
Q ss_pred CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCC
Q 001309 914 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPD 972 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd 972 (1103)
...+..+...+. . . ...++.+|+++..+ ..+++.+..||. .+.+.+|.
T Consensus 83 ~~~Q~~L~~~l~----~---~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRRLLDLLK----R---Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHHHHHHH----H---C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHHHHHHHH----h---c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 222222222221 1 1 12456777776542 246677777774 34455553
No 255
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.33 E-value=3.4e-06 Score=103.78 Aligned_cols=176 Identities=28% Similarity=0.320 Sum_probs=105.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCc---cccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---ITSKWF 877 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~-v~~s~---L~s~~~ 877 (1103)
.|.|++.+|+.|.=.+.- .-......+...+.--+|||.|.||||||.|.+.+++-+-..++. -.++. |.....
T Consensus 287 sIyG~e~VKkAilLqLfg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 588999999888543322 111111222222333579999999999999999999877433322 11111 111000
Q ss_pred c---ccHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc--CCcccCCccEEEEEecCCC
Q 001309 878 G---EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 878 G---~~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld--gl~~k~~~~VlVIaTTN~p 951 (1103)
. .++..+ .+++.+|. ++|+.|||+|.| +.....++..++.+-...+. |+...-+.+.-|+||+|+.
T Consensus 365 rd~~tge~~LeaGALVlAD---~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 365 RDKVTGEWVLEAGALVLAD---GGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EccCCCeEEEeCCEEEEec---CCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 0 001100 01222333 489999999988 44445555555555444433 4444456778899999985
Q ss_pred C-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHhhc
Q 001309 952 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 952 ~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~~~ 987 (1103)
. +|++.+++|||..+.+ +.|+.+.-..+.++.+...
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 4 6788999999976554 5688777777777776654
No 256
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.28 E-value=2.1e-06 Score=91.43 Aligned_cols=180 Identities=19% Similarity=0.288 Sum_probs=93.3
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-Cc--------
Q 001309 804 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SS-------- 871 (1103)
Q Consensus 804 ~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~---~fi~v~~-s~-------- 871 (1103)
+|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.- ..+.++. ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4566666777665541 13467999999999999999999998832 1111111 10
Q ss_pred c-------------ccc-------------cccccHHHHHHHHHHHHhcC-CeEEEEccccccc-cCCCCCchhHHHHHH
Q 001309 872 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 923 (1103)
Q Consensus 872 L-------------~s~-------------~~G~~e~~i~~lF~~A~~~~-PsILfIDEID~L~-~~r~~~~~~~~l~~v 923 (1103)
+ ... ........+..++....+.. ..||+|||++.+. .... .. .+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~----~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DK----DF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---TH----HH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hH----HH
Confidence 0 000 00112345666666665543 4899999999996 2221 12 22
Q ss_pred HHhHHhhhcCCcccCCccEEEEEecCCCC------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-c-CCcccH
Q 001309 924 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 995 (1103)
Q Consensus 924 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~-l-~~dvdl 995 (1103)
+..+...++..... .++.+|.++.... .-...+..|+.. +.+++.+.++-.++++..+.+.. + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 23333333332222 3344444433211 111234446655 88999999999999999877651 1 267778
Q ss_pred HHHHHHcCCCcH
Q 001309 996 EGIANMADGYSG 1007 (1103)
Q Consensus 996 ~~LA~~TeGySg 1007 (1103)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 889999888654
No 257
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.28 E-value=1.1e-05 Score=88.85 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=57.2
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-------------CCCCcHHHHhc
Q 001309 895 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 961 (1103)
Q Consensus 895 ~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 961 (1103)
-|+||||||++.| . - ..+.-|...+.. +-.-+||++||+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D---i----EcFTyL~kalES-----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D---I----ECFTYLHKALES-----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h---h----HHHHHHHHHhcC-----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999977 1 1 111112222222 122356666664 66788999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 001309 962 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1002 (1103)
Q Consensus 962 F~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T 1002 (1103)
+ .+|...+.+.++-++|++...+.+.+. ++..+..++...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 8 566666778888889999888777654 344455555543
No 258
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.8e-06 Score=94.99 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=88.5
Q ss_pred CCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhhc
Q 001309 555 SSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 625 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~~--~~~~~~l~~~L~~l-------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d 625 (1103)
..-++||||+.|.+||.. +.+-...++.|..| +..+|++-|+|+
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr--------------------------- 494 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR--------------------------- 494 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC---------------------------
Confidence 667899999999999943 44445677888887 447888889995
Q ss_pred ccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchhHHHHHhhh------
Q 001309 626 LAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSR------ 697 (1103)
Q Consensus 626 ~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~------ 697 (1103)
|-+|| .+++.+|.-+|++++|..|...+ ...-.-|+-.|+..+.. -+.-|-...+
T Consensus 495 ---pgdlD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~~~~lfkk~sQ~i~l 557 (630)
T KOG0742|consen 495 ---PGDLD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GKWSHLFKKESQRIKL 557 (630)
T ss_pred ---ccchh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-chhhHHHhhhhheeee
Confidence 33444 56778888999999999988866 33334455666655531 1111111111
Q ss_pred -CCCCccchhhhhhccCCCCHHHHHHHHhh
Q 001309 698 -NGLDCVDLESLCIKDQTLTTEGVEKIVGW 726 (1103)
Q Consensus 698 -~~l~~~~L~~La~~tkg~sgadI~~Lv~~ 726 (1103)
..+.+.-+.+.|.+|.||+|-+|..|+-.
T Consensus 558 ~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 558 AGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred ccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11244567889999999999999998754
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=5.3e-06 Score=95.21 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=86.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecCcc---cccc-ccccHHHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 884 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------------------~fi~v~~s~L---~s~~-~G~~e~~i 884 (1103)
+-++.+||+||+|+|||++|+++|+.+.+ .|+.+....- .++. -.-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44578999999999999999999998743 1333332110 0000 00123456
Q ss_pred HHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh
Q 001309 885 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 960 (1103)
Q Consensus 885 ~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 960 (1103)
+.+...+... ...|++||+++.| +. ...+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~-------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NL-------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CH-------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7766666542 2469999999988 21 22233444444332 335677788888899999999
Q ss_pred ccccccccCCCCHHHHHHHHHH
Q 001309 961 RLPRRLMVNLPDAPNREKIIRV 982 (1103)
Q Consensus 961 RF~~~I~l~lPd~eeR~eIL~~ 982 (1103)
|+ ..+.|+.|+.++-.+.++.
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 6788999998887777654
No 260
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.24 E-value=1.8e-05 Score=87.51 Aligned_cols=129 Identities=18% Similarity=0.295 Sum_probs=82.1
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC------------CCCCcHHHHhcc
Q 001309 895 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 962 (1103)
Q Consensus 895 ~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 962 (1103)
-|+||||||++.| .-..-.++++.+.. +-.+++++ +||+ |+-++-.++.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiim-aTNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIM-ATNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEE-EcCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 3789999999877 21222233333221 11344444 4443 677888888887
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcc
Q 001309 963 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENR 1041 (1103)
Q Consensus 963 ~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~ 1041 (1103)
.+|.-.+.+.++-.+||+..+.++.+. .+..+..|.......+-+--.+|+..|...+.++
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----------------- 412 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----------------- 412 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----------------
Confidence 567778889999999999999887654 3344555555555555555566776666666554
Q ss_pred CCCCCCCccccccccHHHHHHHHHHh
Q 001309 1042 ASPPLYSSVDVRPLKMDDFKYAHEQV 1067 (1103)
Q Consensus 1042 ~~~~~~~~~~~r~Lt~eDF~~Ale~v 1067 (1103)
....+.-+|+..|..-+
T Consensus 413 ---------k~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 413 ---------KGKVVEVDDIERVYRLF 429 (454)
T ss_pred ---------cCceeehhHHHHHHHHH
Confidence 12356777888877654
No 261
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.24 E-value=6.5e-06 Score=100.95 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=93.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccccccc--HHHH--------HHHHHHHHhcCCeEEEEccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 904 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~L~s~~~G~~--e~~i--------~~lF~~A~~~~PsILfIDEI 904 (1103)
.||||.|++|+||++++++++.-+. .||+.+....-....+|.. +..+ ..++..|.+ +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5799999999999999999999884 5888877655444445543 1111 123333333 89999999
Q ss_pred cccccCCCCCchhHHHHHHHHhHHhhh--cCCcccCCccEEEEEecCCC---CCCcHHHHhccccccccCCCCHHH
Q 001309 905 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 975 (1103)
Q Consensus 905 D~L~~~r~~~~~~~~l~~vl~~LL~~l--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~ee 975 (1103)
..+ .+...+.+...+++-.+.+ ++....-+.++++|++.|.. +.|.+.++.||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 877 4455666666666665555 66666667889999985432 458899999999888888877543
No 262
>PRK08181 transposase; Validated
Probab=98.23 E-value=3.1e-06 Score=94.60 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-cHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
.+++|+||||||||+||.++++++ |..++.++..++....... .+......+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 589999999999999999999765 7788888887766543110 001122233322 34689999999876
No 263
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.22 E-value=2.6e-05 Score=94.60 Aligned_cols=196 Identities=17% Similarity=0.256 Sum_probs=112.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~--- 873 (1103)
..+.+|+..+.+..++++..+...+. . ..+.+-+||+||||||||++++.+|+++++.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 35678888888888888887763221 1 22334689999999999999999999999988875433220
Q ss_pred ----cccccc---cH---H---HHHHH-HHHHHh-----------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHH
Q 001309 874 ----SKWFGE---GE---K---YVKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 928 (1103)
Q Consensus 874 ----s~~~G~---~e---~---~i~~l-F~~A~~-----------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL 928 (1103)
..+.+. .+ . ....+ +..++. ..+.||+|+|+-.++... ....+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHH
Confidence 011110 00 0 11111 111111 245799999997654221 134444444444
Q ss_pred hhhcCCcccCCc-cEEEEEec-------CCC--------CCCcHHHHhcc-ccccccCCCCHHHHHHHHHHHHhhc----
Q 001309 929 VNWDGLRTKDKE-RVLVLAAT-------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 987 (1103)
Q Consensus 929 ~~ldgl~~k~~~-~VlVIaTT-------N~p--------~~Ld~aLlrRF-~~~I~l~lPd~eeR~eIL~~ll~~~---- 987 (1103)
.. ... ++++|.|- +.. ..+.+.++... -.+|.|.+-...--.+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 112 67777771 111 13556666622 2467888877777777777777665
Q ss_pred ----ccCCcc-cHHHHHHHcCCCcHHHHHHH
Q 001309 988 ----ELASDV-DLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 988 ----~l~~dv-dl~~LA~~TeGySg~DL~~L 1013 (1103)
...... .++.|+..+.|--...|.+|
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 111112 37788887766555555444
No 264
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.20 E-value=6.6e-06 Score=98.34 Aligned_cols=218 Identities=18% Similarity=0.231 Sum_probs=129.6
Q ss_pred hcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHH
Q 001309 776 VVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 776 ~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l-~~p~~gVLL~GPpGTGKT~LAk 854 (1103)
+.......+.+...+.| .|.|++.+|.-|.-.+.--... ....+. .+.-.+|+|.|.||+||+.+.+
T Consensus 329 m~~~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K---~a~eg~~lRGDinv~iVGDPgt~KSQfLk 396 (764)
T KOG0480|consen 329 MSKDENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHK---SAGEGTSLRGDINVCIVGDPGTGKSQFLK 396 (764)
T ss_pred HhcCchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccc---cCCCCccccCCceEEEeCCCCccHHHHHH
Confidence 34445555666665555 6899999998885544321211 111111 2233569999999999999999
Q ss_pred HHHHHhCCcEEEEecCc----cccccccc---cHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001309 855 AVATEAGANFINISMSS----ITSKWFGE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 926 (1103)
Q Consensus 855 AIA~elg~~fi~v~~s~----L~s~~~G~---~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~ 926 (1103)
+++.-+-..++..--+. |....... .+-.+ .++...|.. +|..|||+|.| +...|.++.+.+++
T Consensus 397 ~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADn---GICCIDEFDKM-----d~~dqvAihEAMEQ 468 (764)
T KOG0480|consen 397 AVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADN---GICCIDEFDKM-----DVKDQVAIHEAMEQ 468 (764)
T ss_pred HHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccC---ceEEechhccc-----ChHhHHHHHHHHHh
Confidence 99877644443322111 11100000 00000 112223333 89999999998 33345555555555
Q ss_pred HHhhh--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhccccc-cccCCCCHHHHHHHHHHHHhhcccC
Q 001309 927 FMVNW--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRR-LMVNLPDAPNREKIIRVILAKEELA 990 (1103)
Q Consensus 927 LL~~l--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~-I~l~lPd~eeR~eIL~~ll~~~~l~ 990 (1103)
-...+ -|+...-+.+.-||||+|+.. .+..++++||+.. |.++-|+...-..|-++++......
T Consensus 469 QtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i 548 (764)
T KOG0480|consen 469 QTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGI 548 (764)
T ss_pred heehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccc
Confidence 44433 344444456778999998742 5778999999865 4458899888888888888764432
Q ss_pred CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 991 SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 991 ~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
++. ......|+..+++..+..|.
T Consensus 549 ~~~-----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 549 DDA-----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ccc-----ccccccccHHHHHHHHHHHH
Confidence 211 11124677778777777665
No 265
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.18 E-value=6.5e-06 Score=97.52 Aligned_cols=176 Identities=18% Similarity=0.252 Sum_probs=96.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccccHHH-------HHHHHHHHHhcCCeEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~-----~G~~e~~-------i~~lF~~A~~~~PsILf 900 (1103)
...++|+|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ....++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEE
Confidence 3579999999999999999997665 5799999998754321 1211000 001122 22358999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCH
Q 001309 901 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDA 973 (1103)
Q Consensus 901 IDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~ 973 (1103)
||||+.| +...+..+..++.+-.....+.....+.++.+|++|+.. ..+.+.+..|+ ..+.+.+|..
T Consensus 239 ldei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppL 312 (441)
T PRK10365 239 LDEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSL 312 (441)
T ss_pred EeccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCCh
Confidence 9999998 333333333333222111112111123467888888653 23444555555 3577888888
Q ss_pred HHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 974 PNREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 974 eeR~e----IL~~ll~~~~----l----~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
.+|.+ +++.++.+.. . .++..+..|....=.-+.++|+++++.|+..
T Consensus 313 reR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 77755 5555554421 0 1122222333322122446666666666543
No 266
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.17 E-value=1.5e-05 Score=93.10 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=131.3
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHH
Q 001309 779 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 779 ~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l-~~p~~gVLL~GPpGTGKT~LAkAIA 857 (1103)
..++.+.+...+.| +|.|++++|+.|.-++.-...+ -...|+ .+..-+|+|.|.||+-|+.|.++|.
T Consensus 329 ~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~---~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 329 EGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDK---SPGDGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred cccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCC---CCCCCceeecceeEEecCCCchhHHHHHHHHH
Confidence 44555556555555 7899999999986655321111 111111 1233569999999999999999998
Q ss_pred HHhCCcEEE---------EecCccccccccccHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhH
Q 001309 858 TEAGANFIN---------ISMSSITSKWFGEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 927 (1103)
Q Consensus 858 ~elg~~fi~---------v~~s~L~s~~~G~~e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~L 927 (1103)
+-.-..++. +.++-+.....|+. .+ .++..+|.. +|..|||+|.|.. ....+.-.++++-
T Consensus 397 rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM--~LEGGALVLAD~---GICCIDEfDKM~e-----~DRtAIHEVMEQQ 466 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEM--VLEGGALVLADG---GICCIDEFDKMDE-----SDRTAIHEVMEQQ 466 (721)
T ss_pred hcCcccceecCCCCCccccchhhhcCCCCCee--EeccceEEEccC---ceEeehhhhhhhh-----hhhHHHHHHHHhh
Confidence 776433332 22211111111111 00 112233333 8999999999942 2333444555444
Q ss_pred Hhhh--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHhh--ccc
Q 001309 928 MVNW--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK--EEL 989 (1103)
Q Consensus 928 L~~l--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~~--~~l 989 (1103)
...+ -|+.+.-+.+.-|+|++|+.+ .|+.++++||+..+.+ +.|+.+.-..+.+++.-- ..-
T Consensus 467 TISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~ 546 (721)
T KOG0482|consen 467 TISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEE 546 (721)
T ss_pred hhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCC
Confidence 3333 466666678889999998742 6889999999975544 779888877777765421 111
Q ss_pred CC-----cccHH------HHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 001309 990 AS-----DVDLE------GIANMADGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 990 ~~-----dvdl~------~LA~~TeGySg~DL~~L~~~Aa~~air 1023 (1103)
.+ .++.+ .+|+.-.-+.+.+|..-+..|.....+
T Consensus 547 qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rr 591 (721)
T KOG0482|consen 547 QPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRR 591 (721)
T ss_pred CCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 11 12222 234444566777887777666554433
No 267
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.13 E-value=5.9e-05 Score=91.14 Aligned_cols=174 Identities=22% Similarity=0.230 Sum_probs=101.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-ecCc---cccc--
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMSS---ITSK-- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v-~~s~---L~s~-- 875 (1103)
.|.+++++|+.|.-.+. -.....+.+++-.+.--+|||+|.||||||.|.+.+++-+..-.+.= ..+. +..-
T Consensus 430 sIye~edvKkglLLqLf--GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF--GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHh--cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 68899999998844332 22223334443334446799999999999999999988773221110 0000 0000
Q ss_pred cccccHHHHH--HHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHH--hhhcCCcccCCccEEEEEecCCC
Q 001309 876 WFGEGEKYVK--AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 876 ~~G~~e~~i~--~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL--~~ldgl~~k~~~~VlVIaTTN~p 951 (1103)
.-+++.+.+- .+...+ ..+|..|||+|.| +...+..+.+++++-. ...-|+-..-+.+.-|||++|+.
T Consensus 508 rd~dtkqlVLesGALVLS---D~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLS---DNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred ecCccceeeeecCcEEEc---CCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 0000000000 011111 2389999999999 3334445555554433 33345555556788899999863
Q ss_pred C-------------CCcHHHHhcccccc-ccCCCCHHHHHHHHHHHHh
Q 001309 952 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 985 (1103)
Q Consensus 952 ~-------------~Ld~aLlrRF~~~I-~l~lPd~eeR~eIL~~ll~ 985 (1103)
. .|++.+++||+.++ .++.||...-+.|-.++..
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 2 67899999998754 3467776655566655544
No 268
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=9.1e-06 Score=80.51 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
+.++|+||.|+|||++++.+++.+. -+++.+++.+.........+ +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998886 77888887664332111111 222222222225689999999877
No 269
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.13 E-value=4.6e-07 Score=104.14 Aligned_cols=175 Identities=26% Similarity=0.339 Sum_probs=88.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-----ccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 876 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~-----L~s~~ 876 (1103)
.|.|++.+|..+.=.+...... ....+...+..-++||.|.||+|||.|.+.+++.....+ .++... |....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~--~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEK--NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SC--CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccc--ccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 6788888877763221111110 000111123345799999999999999998865553333 222211 11110
Q ss_pred c---cccHHHHH-HHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc--CCcccCCccEEEEEecCC
Q 001309 877 F---GEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 877 ~---G~~e~~i~-~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld--gl~~k~~~~VlVIaTTN~ 950 (1103)
. ...+..+. +.+..|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 0 01111111 34555655 99999999988 33344455555544333332 233333567889999987
Q ss_pred CC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHhhc
Q 001309 951 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 951 p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~~~ 987 (1103)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4778899999977654 6777777777777777653
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=1.5e-05 Score=78.04 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecCccccc--------------cc--cccHHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITSK--------------WF--GEGEKYVKAVFSLAS 892 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el--------g~~fi~v~~s~L~s~--------------~~--G~~e~~i~~lF~~A~ 892 (1103)
..++|+||+|+|||++++.++..+ ..+++.++++..... .. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999887 678888887542210 01 122334444555555
Q ss_pred hcCCeEEEEccccccc
Q 001309 893 KIAPSVVFVDEVDSML 908 (1103)
Q Consensus 893 ~~~PsILfIDEID~L~ 908 (1103)
.....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 271
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.07 E-value=6.8e-06 Score=94.41 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=66.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc---cHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~---~e~~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
.+++|+||+|+|||+||.+||+++ +..++.++..++....... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765532110 000111112222 245799999997652
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-CCC----CcHHHHhcc
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRL 962 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~----Ld~aLlrRF 962 (1103)
.+....+.+..+++..+.. +-.+|.|||. +.. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 2223344444555544321 1235666664 332 456677775
No 272
>PRK06526 transposase; Provisional
Probab=98.07 E-value=6.2e-06 Score=91.57 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-cHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
..+++|+||||||||+||.+|+.++ |..+..+++.++....... ........+.. -..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 4689999999999999999998876 6666666666554332110 00011122221 134689999999876
No 273
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.02 E-value=1.9e-05 Score=89.92 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=48.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccccc-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~-e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
.++++|+||+|+|||+||.|+|+++ |.++..+..+++....-... .......+... ....+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888877654321110 00122222222 24579999999643
No 274
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.02 E-value=4.4e-06 Score=87.90 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccccc-HHHHHHHHHHHHhcCCeEEEEccccc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 906 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~-e~~i~~lF~~A~~~~PsILfIDEID~ 906 (1103)
...+++|+||+|+|||+||.++++++ |.++..++.+++....-... .......+.... ...+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 34689999999999999999999877 88888898887655432110 011222333222 357999999964
No 275
>PRK06921 hypothetical protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=90.22 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=44.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 906 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~ 906 (1103)
..+++|+||+|+|||+|+.+||+++ +..++.++..++....... .......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHH--hcCCCEEEEecccc
Confidence 3589999999999999999999886 5677777765544321110 0011111111 12458999999953
No 276
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=5.8e-05 Score=85.13 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecCcccccc-cc----ccHHHHHHHHHHHHhc----CC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 896 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi--------~v~~s~L~s~~-~G----~~e~~i~~lF~~A~~~----~P 896 (1103)
+-++.+||+||.|+||+.+|.++|..+-+.-. .-..+++.--. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 44578999999999999999999998844210 00112211000 00 1233455555554432 23
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCC
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 971 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lP 971 (1103)
.|++||++|.|. ....|.|+..++. ++.++++|..|+.++.+.+++++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 699999999982 2233455555544 4577899999999999999999998 45556544
No 277
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=9.2e-06 Score=90.81 Aligned_cols=75 Identities=31% Similarity=0.350 Sum_probs=60.0
Q ss_pred cccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001309 294 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 373 (1103)
Q Consensus 294 ~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 373 (1103)
-++|+.+..=-||+-=| .-+-|+-|++=|.+-|+-.++ +-..+|=+-+|=|||-||||| ....|.||||+++.++
T Consensus 130 w~LPa~eF~glWEsLiy--ds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGT--GKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIY--DSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGT--GKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhh--cccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCC--ChhHHHHHHHHhheee
Confidence 35666666667888544 367788888877777776555 455789999999999999999 6999999999999888
No 278
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=97.98 E-value=2.1e-05 Score=73.56 Aligned_cols=79 Identities=29% Similarity=0.465 Sum_probs=64.6
Q ss_pred ceeeeeccccc-ceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 4 AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 4 ~~~tvg~~~~~-~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
..++||++..| ++.|.|+.+|...|.|..-..++ ..+.-.+++-.+.|||+.+.++..+.|..||++.|+. +.+.
T Consensus 22 ~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~~---~~~~~~~s~~g~~vn~~~~~~~~~~~l~~gd~i~ig~-~~~~ 97 (102)
T cd00060 22 GTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGG---VVLIDLGSTNGTFVNGQRVSPGEPVRLRDGDVIRLGN-TSIS 97 (102)
T ss_pred CeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCCC---EEEEECCCCCCeEECCEECCCCCcEECCCCCEEEECC-eEEE
Confidence 57999999999 99999999999999999664322 3344444444688999999998899999999999987 5666
Q ss_pred eeee
Q 001309 83 YIFQ 86 (1103)
Q Consensus 83 yif~ 86 (1103)
|.|+
T Consensus 98 ~~~~ 101 (102)
T cd00060 98 FRFE 101 (102)
T ss_pred EEEe
Confidence 6665
No 279
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.96 E-value=2.4e-05 Score=86.86 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHH--HHHHHHHHHHhcCCeEEEEcccccc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK--YVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~--~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
.+.+++|+||||+|||+||.||++++ |..++.++.+++....-..... .-..+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCc
Confidence 34689999999999999999999887 7889999988876652211100 01111111 123479999999754
No 280
>PRK09183 transposase/IS protein; Provisional
Probab=97.95 E-value=2e-05 Score=87.73 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-cHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
..+++|+||||+|||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4579999999999999999997764 7777777776655332110 011233344433 245689999999865
No 281
>PF05729 NACHT: NACHT domain
Probab=97.95 E-value=5.9e-05 Score=76.20 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=73.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecCcccccc------------ccccHHHHHH-HHHHHHhcC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 895 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg--------~~-fi~v~~s~L~s~~------------~G~~e~~i~~-lF~~A~~~~ 895 (1103)
-++|+|+||+|||++++.++..+. .. ++.+.+.+..... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987761 12 2233333321110 0011111122 222334455
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc--cccccCCCCH
Q 001309 896 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 973 (1103)
Q Consensus 896 PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~--~~I~l~lPd~ 973 (1103)
..+|+||.+|.+...... .........+..++.. .. ..++.+|.|+.+ ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~----~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--AL----PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--cc----CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999998532211 0111222233333321 01 123444544443 22211 333332 3578888899
Q ss_pred HHHHHHHHHHHhh
Q 001309 974 PNREKIIRVILAK 986 (1103)
Q Consensus 974 eeR~eIL~~ll~~ 986 (1103)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 282
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.88 E-value=6.3e-05 Score=75.39 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=47.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------------ccc--ccHHHHHHHHHHH
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 891 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----------------------~~G--~~e~~i~~lF~~A 891 (1103)
++|+||||+|||+++..++..+ +.+++.++....... ... ........+...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 566766665432210 000 1111222345556
Q ss_pred HhcCCeEEEEcccccccc
Q 001309 892 SKIAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L~~ 909 (1103)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998864
No 283
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.87 E-value=8.8e-05 Score=81.36 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=75.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
.+-.++||+|||||..++++|+.+|.+++.++|++..+ ...+.++|.-+... .+.+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46678999999999999999999999999999987543 34677777666554 489999999988 2122
Q ss_pred hHHHHHHHHhHHhhhcCCc---------ccCCccEEEEEecCC----CCCCcHHHHhccccccccCCCCHHHHHHH
Q 001309 917 HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKI 979 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~ldgl~---------~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eI 979 (1103)
-......+..+...+..-. -.-+...-+..|.|+ ...|++.++.-| +.+.+..||...-.++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 2222222222222222111 011123445556664 357888887777 7788888987654443
No 284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.87 E-value=2.9e-05 Score=93.80 Aligned_cols=176 Identities=25% Similarity=0.317 Sum_probs=107.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCcc-----ccccccccHHHHHHHHHHHHh-----cCCeEEEEccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEV 904 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el--g~~fi~v~~s~L-----~s~~~G~~e~~i~~lF~~A~~-----~~PsILfIDEI 904 (1103)
-.+||.|.+||||-.||+++-... ..||+.+||..+ .+.+||.........+..-++ ...+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 369999999999999999997665 579999999764 344555332222221111111 11279999999
Q ss_pred cccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHH
Q 001309 905 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE 977 (1103)
Q Consensus 905 D~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~ 977 (1103)
..| +-..|..+.+++++-.+.--|-.. .+..|.||+||++. ..+-+.+.=|+ ..+.+.+|...+|.
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~ 489 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERS 489 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccc
Confidence 887 445667777787776655444444 56889999999874 12223333354 35667788877764
Q ss_pred H---HHHHHHhhcccC-CcccHHHHHHH----cCCCcHHHHHHHHHHHHhh
Q 001309 978 K---IIRVILAKEELA-SDVDLEGIANM----ADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 978 e---IL~~ll~~~~l~-~dvdl~~LA~~----TeGySg~DL~~L~~~Aa~~ 1020 (1103)
. .+..++.+..-. -..+-+.++.. -.| +.++|.++++.++..
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l 539 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAAL 539 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc
Confidence 4 555555543321 12222223322 233 446777777766543
No 285
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00042 Score=78.38 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=74.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ecCccccccc-c--ccHHHHHHHHHHHHhc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SMSSITSKWF-G--EGEKYVKAVFSLASKI 894 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi-------~v---------~~s~L~s~~~-G--~~e~~i~~lF~~A~~~ 894 (1103)
+.++.+||+|| .||+.+|.++|..+-+.-. .+ +.+++.--.. | -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45578999996 6899999999988733210 00 1122110000 1 1123566655554432
Q ss_pred ----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001309 895 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 895 ----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
...|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 2234556666555 4466888899988999999999999 5677754
No 286
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.0002 Score=79.47 Aligned_cols=122 Identities=7% Similarity=0.028 Sum_probs=77.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------------EEecCccccccc---cccHHHHHHHHHHHH---
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------------NISMSSITSKWF---GEGEKYVKAVFSLAS--- 892 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi--------------~v~~s~L~s~~~---G~~e~~i~~lF~~A~--- 892 (1103)
..+++.+||+||.|+||..+|.++|..+-+.-- .-+.+++.--+. .-....++.+-....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 346688999999999999999999988733210 001112111000 011223444433322
Q ss_pred -h-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001309 893 -K-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 893 -~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
. ....|++|+++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+++++|+. .+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~ 146 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRCV-QYVVLS 146 (261)
T ss_pred hhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhee-eeecCC
Confidence 1 234799999999882 2344666666655 45778999999999999999999984 455555
Q ss_pred C
Q 001309 971 P 971 (1103)
Q Consensus 971 P 971 (1103)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 4
No 287
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=4.5e-05 Score=85.58 Aligned_cols=139 Identities=21% Similarity=0.332 Sum_probs=78.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecCccccccccccHHHHHHHHHHH----H-------hcCCeEEEEc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVVFVD 902 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg-~~--fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~-------~~~PsILfID 902 (1103)
+++||+||+|||||++++.....+. .. ...++++... ....+..+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999999877663 22 3344443211 111222221111 0 1123599999
Q ss_pred cccccccCCCCCchhHHHHHHHHhHHhhhcCCccc------CCccEEEEEecCCC---CCCcHHHHhccccccccCCCCH
Q 001309 903 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 973 (1103)
Q Consensus 903 EID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k------~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~ 973 (1103)
|+..-. .+.-+.+. ..+++.+++.. .|+... .=.++.+||++++. ..+++.+.|.| .++.++.|+.
T Consensus 108 DlN~p~--~d~ygtq~-~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQ--PDKYGTQP-PIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--H-HHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCC--CCCCCCcC-HHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 997542 22222232 23444444432 122211 11468889998764 35788999988 6889999999
Q ss_pred HHHHHHHHHHHhh
Q 001309 974 PNREKIIRVILAK 986 (1103)
Q Consensus 974 eeR~eIL~~ll~~ 986 (1103)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988865
No 288
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.78 E-value=0.00019 Score=79.95 Aligned_cols=157 Identities=16% Similarity=0.097 Sum_probs=83.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCc---EEEEecCc----------cccc---c------ccccHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATE--AGAN---FINISMSS----------ITSK---W------FGEGEKYVKAVFSL 890 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~e--lg~~---fi~v~~s~----------L~s~---~------~G~~e~~i~~lF~~ 890 (1103)
..+-|.|+|++|+|||+||..+++. .... ++.++... +... . ....+.....+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE- 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-
Confidence 4467999999999999999999977 3222 12233221 0000 0 1112333333433
Q ss_pred HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001309 891 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 891 A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
.-...+.+|+||+++... .+..+...+.. ...+..||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc--------------ccccccccccc----ccccccccccccccccc-cccccc-cccccccc
Confidence 334458999999997541 11222211111 11245677777654322 111111 35688888
Q ss_pred CCHHHHHHHHHHHHhhcc----cCCcccHHHHHHHcCCCcHHHHHHH
Q 001309 971 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 971 Pd~eeR~eIL~~ll~~~~----l~~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
.+.++-.++|........ ...+.....|+..+.|+ +-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999998876543 11233467888988764 4444444
No 289
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00035 Score=79.46 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=89.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecCccccccccccHHHHHHHHHHHHh-----cCC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAP 896 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~-----~~P 896 (1103)
-.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +..+ .-..++.+.+.+.. ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCc
Confidence 3467999999999999999999988732 12222200 0101 11234444443321 245
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHH
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 976 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR 976 (1103)
.|++||++|.+. ....+.|+..++. ++..+++|.+|+.+..+-+++++|+ ..+.+..|+.++-
T Consensus 92 KvvII~~~e~m~------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKTS------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKI 154 (299)
T ss_pred eEEEEecccccC------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHH
Confidence 799999999872 1233455555555 3456777777778899999999998 6788999988877
Q ss_pred HHHHHHHHhhcccCCcccHHHHHHHcCC
Q 001309 977 EKIIRVILAKEELASDVDLEGIANMADG 1004 (1103)
Q Consensus 977 ~eIL~~ll~~~~l~~dvdl~~LA~~TeG 1004 (1103)
.+.+... .. ++.....+|..+.|
T Consensus 155 ~~~l~~~----~~-~~~~a~~~a~~~~~ 177 (299)
T PRK07132 155 LAKLLSK----NK-EKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHc----CC-ChhHHHHHHHHcCC
Confidence 6665542 22 22333445555554
No 290
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.75 E-value=4.8e-05 Score=83.85 Aligned_cols=134 Identities=25% Similarity=0.378 Sum_probs=83.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEecCccccc-----cccccHHHHHHHHHHHHh--------cCCe
Q 001309 837 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLASK--------IAPS 897 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA------~elg~~fi~v~~s~L~s~-----~~G~~e~~i~~lF~~A~~--------~~Ps 897 (1103)
..+||.||.|.||+.||+.|. +.+..+|+.+||..+.+. .+| .++..|.-|+. ...+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCc
Confidence 359999999999999999984 445789999999987654 222 34444444332 2347
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-------CCCCcHHHHhccccccccCC
Q 001309 898 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 898 ILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRF~~~I~l~l 970 (1103)
++|+|||..| ...++..+.+.+.+-...--|-...-...+-+|+-|-+ ...+-+.+..|+ ..+.|.+
T Consensus 285 mlfldeigel-----gadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~l 358 (531)
T COG4650 285 MLFLDEIGEL-----GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTL 358 (531)
T ss_pred eEehHhhhhc-----CccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeec
Confidence 9999999988 33455555555554332222221112244556665532 123344555566 4677889
Q ss_pred CCHHHHHHHH
Q 001309 971 PDAPNREKII 980 (1103)
Q Consensus 971 Pd~eeR~eIL 980 (1103)
|...+|.+=+
T Consensus 359 pgl~qr~edi 368 (531)
T COG4650 359 PGLRQRQEDI 368 (531)
T ss_pred cccccCcccc
Confidence 9888876643
No 291
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00038 Score=71.65 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
...++++|+||+|||+++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 292
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.63 E-value=5.5e-05 Score=90.28 Aligned_cols=168 Identities=25% Similarity=0.383 Sum_probs=92.5
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001309 779 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 779 ~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
...+...+++.+.| .|.|++.+|..+--.+.--..+-. -.+-. .+.--++||+|.|||||+.+.+++++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~-~~khk-vRGDinvLL~GDPGTaKSQFLKY~eK 504 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNP-GGKHK-VRGDINVLLLGDPGTAKSQFLKYAEK 504 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCC-CCCce-eccceeEEEecCCCccHHHHHHHHHh
Confidence 33444556666665 589999999988655432111100 00000 12224599999999999999999988
Q ss_pred HhCCcEEE---------EecCc----cccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHH
Q 001309 859 EAGANFIN---------ISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 925 (1103)
Q Consensus 859 elg~~fi~---------v~~s~----L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~ 925 (1103)
-....++. +.+.- +...|.-++ ++..+|.+ +|.+|||+|.|-.+... .-++++.. +
T Consensus 505 ~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAMEQ--Q 573 (854)
T KOG0477|consen 505 TSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAMEQ--Q 573 (854)
T ss_pred cCcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHHHh--c
Confidence 77444332 22211 112222111 23344555 89999999999433221 22232221 0
Q ss_pred hHHhhhcCCcccCCccEEEEEecCCC---C----------CCcHHHHhcccccccc
Q 001309 926 EFMVNWDGLRTKDKERVLVLAATNRP---F----------DLDEAVVRRLPRRLMV 968 (1103)
Q Consensus 926 ~LL~~ldgl~~k~~~~VlVIaTTN~p---~----------~Ld~aLlrRF~~~I~l 968 (1103)
..-..-.|+.+.-..+..||||+|+. . +|.+.+++||+....+
T Consensus 574 SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 574 SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 11111112222234678899999872 1 5668899999864444
No 293
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.61 E-value=0.00024 Score=80.33 Aligned_cols=161 Identities=20% Similarity=0.349 Sum_probs=95.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecCc--cc---
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSS--IT--- 873 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~---elg~~fi~v~~s~--L~--- 873 (1103)
.+.|..+..+.+.+++..-. +....+.+++.||.|+|||++...... +.|-+|+.|.... ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 46777777788877775322 233456899999999999997665533 5566666554322 11
Q ss_pred ----------------cccccccHHHHHHHHHHHHhc---C--CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc
Q 001309 874 ----------------SKWFGEGEKYVKAVFSLASKI---A--PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 932 (1103)
Q Consensus 874 ----------------s~~~G~~e~~i~~lF~~A~~~---~--PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld 932 (1103)
.+.+|.....+..+....+.. . +.|.++||+|..++.. .++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 112333333333333333221 1 2344468999775332 133333333
Q ss_pred CCcccCCccEEEEEecCCCC---CCcHHHHhccccc-ccc-CCCCHHHHHHHHHHHH
Q 001309 933 GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 984 (1103)
Q Consensus 933 gl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~-I~l-~lPd~eeR~eIL~~ll 984 (1103)
.+....+.++.||+.|.+.+ .|...+.+||.++ |.+ +.....+-..+++.++
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33334568899999997765 4557788899876 433 3334777888888777
No 294
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.59 E-value=0.0023 Score=76.40 Aligned_cols=197 Identities=15% Similarity=0.217 Sum_probs=103.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 871 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~------ 871 (1103)
.+.+++.-+.+-..++++.+.. + ..+.. .-+.+-+||+||+|||||+.++.+++++|..++.-.-+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~-~---~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ-V---AEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH-H---HHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4566777776666677666541 1 11111 112345899999999999999999999999988766321
Q ss_pred -ccccccccc------HHHHHHHHHHHHh------------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc
Q 001309 872 -ITSKWFGEG------EKYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 932 (1103)
Q Consensus 872 -L~s~~~G~~------e~~i~~lF~~A~~------------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld 932 (1103)
+.+...+-. -.........+.+ ..+.+|+|||+-..+... ..+..+.++..+. .
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s-- 224 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-S-- 224 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-h--
Confidence 111111111 1111122233312 235699999997664321 2233444444222 1
Q ss_pred CCcccCCccEEEEEec-CCCCCCcHHHHh--------ccccccccCCCCHHHHHHHHHHHHhhcccC-------CcccHH
Q 001309 933 GLRTKDKERVLVLAAT-NRPFDLDEAVVR--------RLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 996 (1103)
Q Consensus 933 gl~~k~~~~VlVIaTT-N~p~~Ld~aLlr--------RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-------~dvdl~ 996 (1103)
. ...++++|.|- ..++..++..+. |+ ..|.|.+-...-..+.|+.++..+... ....++
T Consensus 225 -~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 225 -I---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -c---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 1 12334444332 222333221111 44 357777777777777888777664322 123344
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 001309 997 GIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 997 ~LA~~TeGySg~DL~~L~~~A 1017 (1103)
.++..+.| ||+..+..-
T Consensus 300 ~i~~~s~G----DIRsAInsL 316 (634)
T KOG1970|consen 300 LICQGSGG----DIRSAINSL 316 (634)
T ss_pred HHHHhcCc----cHHHHHhHh
Confidence 45555444 555554443
No 295
>CHL00181 cbbX CbbX; Provisional
Probab=97.53 E-value=0.00037 Score=78.91 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=78.5
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhhcccCCC
Q 001309 557 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 630 (1103)
Q Consensus 557 p~Ilf~~d~e~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd 630 (1103)
+-||||||++.+... ..+....|...++...++++||++++. +. ++.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~----------------------~~~---- 175 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR----------------------MDK---- 175 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH----------------------HHH----
Confidence 359999999984321 245556666677777788999999762 00 110
Q ss_pred CccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHh---hchhhhhcccchhHHHHHhhhCCCCccchhh
Q 001309 631 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLES 707 (1103)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e---~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~ 707 (1103)
| ......+.++|+..|.++++..+.+...|+..+. +.+.... .. .+...+. .
T Consensus 176 -~----------~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~---~L~~~i~----------~ 230 (287)
T CHL00181 176 -F----------YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EK---ALLDYIK----------K 230 (287)
T ss_pred -H----------HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HH---HHHHHHH----------H
Confidence 0 1112568889999999999999888876665443 3333221 11 1111000 0
Q ss_pred hhhccCCCC-HHHHHHHHhhhhhhccccccC
Q 001309 708 LCIKDQTLT-TEGVEKIVGWALSHHFMHCSE 737 (1103)
Q Consensus 708 La~~tkg~s-gadI~~Lv~~A~s~al~r~~~ 737 (1103)
. .....|+ +-+++.++..|.....+|...
T Consensus 231 ~-~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 231 R-MEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred h-CCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1134577 789999999998887777654
No 296
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.51 E-value=0.00096 Score=85.26 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 344 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 344 s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
.+.+||.||+|+ -+.+|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG~--GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPGV--GKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCCC--CHHHHHHHHHHHhcCCeEEEeC
Confidence 357999999999 6999999999999999888774
No 297
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.48 E-value=0.0016 Score=86.72 Aligned_cols=172 Identities=16% Similarity=0.244 Sum_probs=94.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecCccc-
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSIT- 873 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f---i~v~~s~L~- 873 (1103)
..+++++|++..++++...+... ....+-+-|+|++|+|||+||+++++.+...| +.++...+.
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 35788999999999998877521 12335689999999999999999988874332 112110000
Q ss_pred -ccccc-----c-------cHHHHHH-------------HHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhH
Q 001309 874 -SKWFG-----E-------GEKYVKA-------------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 927 (1103)
Q Consensus 874 -s~~~G-----~-------~e~~i~~-------------lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~L 927 (1103)
....+ . ....+.. .....-..++.+|+||+++.. ..++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L 314 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDAL 314 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHH
Confidence 00000 0 0001111 111222345679999999642 112222
Q ss_pred HhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCccc----HHHHHHH
Q 001309 928 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVD----LEGIANM 1001 (1103)
Q Consensus 928 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvd----l~~LA~~ 1001 (1103)
....+.. ...-.||.||.... +.+ ..++++.+..|+.++..++|..+.-+....+ .+ ..+++..
T Consensus 315 ~~~~~~~----~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~ 384 (1153)
T PLN03210 315 AGQTQWF----GSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALR 384 (1153)
T ss_pred HhhCccC----CCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 2211111 12235566666432 222 3456788899999999999887764432222 22 2345666
Q ss_pred cCCC
Q 001309 1002 ADGY 1005 (1103)
Q Consensus 1002 TeGy 1005 (1103)
+.|.
T Consensus 385 c~GL 388 (1153)
T PLN03210 385 AGNL 388 (1153)
T ss_pred hCCC
Confidence 6665
No 298
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.33 E-value=0.00081 Score=71.84 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc-----------------------cccHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVF 888 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~-----------------------G~~e~~i~~lF 888 (1103)
+..-++|+||||+|||+++..++... +...+.++...+....+ .+....+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 34568999999999999999987654 66788888754110000 01112244455
Q ss_pred HHHHhcCCeEEEEcccccccc
Q 001309 889 SLASKIAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 889 ~~A~~~~PsILfIDEID~L~~ 909 (1103)
..+.+..+.+|+||-+..++.
T Consensus 91 ~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHhhcCccEEEEeCcHHHhH
Confidence 555666789999999998863
No 299
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.32 E-value=0.00068 Score=87.43 Aligned_cols=137 Identities=26% Similarity=0.304 Sum_probs=85.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------ccc-cccc--cHH-HHHHHHHHHHhcCCeEEEEccccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSK-WFGE--GEK-YVKAVFSLASKIAPSVVFVDEVDS 906 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L------~s~-~~G~--~e~-~i~~lF~~A~~~~PsILfIDEID~ 906 (1103)
+++||.|.||+|||+|..|+|+..|-.+++++.++- .+. ..++ ++- +...-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 469999999999999999999999999999998762 211 1222 111 22333444444 347899999963
Q ss_pred cccCCCCCchhHHHHHHHHhHHhhhcC-----C--cccCCccEEEEEecCCCC------CCcHHHHhccccccccCCCCH
Q 001309 907 MLGRRENPGEHEAMRKMKNEFMVNWDG-----L--RTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDA 973 (1103)
Q Consensus 907 L~~~r~~~~~~~~l~~vl~~LL~~ldg-----l--~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~l~lPd~ 973 (1103)
- .|..+. -++..+..... + .-+...+++|.||-|+.+ .|+..++.|| .++.++..+.
T Consensus 1623 a--------SQSVlE-GLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~ 1692 (4600)
T COG5271 1623 A--------SQSVLE-GLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTT 1692 (4600)
T ss_pred h--------HHHHHH-HHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEeccccc
Confidence 2 122221 12222222111 1 112346789999988753 6999999999 4666666665
Q ss_pred HHHHHHHHHHH
Q 001309 974 PNREKIIRVIL 984 (1103)
Q Consensus 974 eeR~eIL~~ll 984 (1103)
++...|...++
T Consensus 1693 dDi~~Ia~~~y 1703 (4600)
T COG5271 1693 DDITHIANKMY 1703 (4600)
T ss_pred chHHHHHHhhC
Confidence 55555555444
No 300
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.30 E-value=0.001 Score=79.42 Aligned_cols=172 Identities=24% Similarity=0.313 Sum_probs=106.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------EEEEecCcc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------FINISMSSI 872 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---------fi~v~~s~L 872 (1103)
.|.|++.+|+.|.-++.--.. ..+..+.-.+.--+||+.|.|-+-|+.|.+++.+..... =+-+.++--
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 588999999998766542111 112222223334569999999999999999998765221 122222111
Q ss_pred ccccccccHHHHH-HHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhh--cCCcccCCccEEEEEecC
Q 001309 873 TSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 949 (1103)
Q Consensus 873 ~s~~~G~~e~~i~-~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~l--dgl~~k~~~~VlVIaTTN 949 (1103)
... ..+|..+. +...+|.+ +|+.|||+|.| +.....+.-.++.+-.+.+ -|+...-+.++-|||++|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 12333332 23344555 89999999998 4455556666666655544 466666678999999999
Q ss_pred CCC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHh
Q 001309 950 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 985 (1103)
Q Consensus 950 ~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~ 985 (1103)
+.+ .|++.+++||+..+.+ +.-+...-..|-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 853 5788999999865443 44444444455555443
No 301
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.30 E-value=0.0006 Score=74.27 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--cccc--------cccccHHHHHHHHHHHHh--cCCeEEE
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLASK--IAPSVVF 900 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~--L~s~--------~~G~~e~~i~~lF~~A~~--~~PsILf 900 (1103)
.+.+..+||||+||+|||++|+.++. ..-++..+... +.+. .....-..+...+..+.. ....+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 44346699999999999999999862 23334443321 1100 001111223333333332 3467999
Q ss_pred Ecccccccc
Q 001309 901 VDEVDSMLG 909 (1103)
Q Consensus 901 IDEID~L~~ 909 (1103)
||+|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998753
No 302
>PHA00729 NTP-binding motif containing protein
Probab=97.29 E-value=0.00051 Score=74.92 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANF 864 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~f 864 (1103)
.+++|+|+||||||+||.+|++.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999886433
No 303
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.29 E-value=0.0003 Score=67.79 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg 861 (1103)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 304
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0053 Score=67.71 Aligned_cols=173 Identities=20% Similarity=0.205 Sum_probs=100.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccc-----c----ccc--------cHHHHHHHHHHHHhc-CC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK-----W----FGE--------GEKYVKAVFSLASKI-AP 896 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s~L~s~-----~----~G~--------~e~~i~~lF~~A~~~-~P 896 (1103)
-+.++|+-|+|||++++++...++ ...+.++...+... + ... .++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999997776663 22334444332111 1 111 122233344444444 46
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC-c---HHHHhccccccccCCCC
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 972 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L-d---~aLlrRF~~~I~l~lPd 972 (1103)
-++++||.+.|. ...-+.++.+.+ .-... ...-.+++|+-..-...+ . ..+..|++.++.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n----l~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN----LEEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh----hcccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999882 223333332222 11111 111334555433211111 1 23334887668888889
Q ss_pred HHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhh
Q 001309 973 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1022 (1103)
Q Consensus 973 ~eeR~eIL~~ll~~~----~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ai 1022 (1103)
.++-..+++..++.. .+.++..+..++..+.| .+..+.++|..|...+.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~ 254 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAY 254 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 998899999998874 34456667888888888 56677788777765443
No 305
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.25 E-value=0.0015 Score=67.98 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=45.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc-----------------------ccH-----
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 881 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~------~~G-----------------------~~e----- 881 (1103)
+||+||||||||+|+..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 566666654321000 000 000
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccc
Q 001309 882 KYVKAVFSLASKIAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 882 ~~i~~lF~~A~~~~PsILfIDEID~L~~ 909 (1103)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999988753
No 306
>PF14516 AAA_35: AAA-like domain
Probab=97.22 E-value=0.0096 Score=68.84 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=87.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-------------------------------c
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 880 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~-------------------------------~ 880 (1103)
|+.-+.|.||..+|||+|...+.+.+ +...+.+++..+....+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 45679999999999999999887665 7788888876543211111 1
Q ss_pred HHHHHHHHHHH---HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHH
Q 001309 881 EKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 957 (1103)
Q Consensus 881 e~~i~~lF~~A---~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 957 (1103)
.......|+.. ...+|-||+|||||.++....- ..+. ..++..+...-.. .....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~--~~dF-~~~LR~~~~~~~~--~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI--ADDF-FGLLRSWYEQRKN--NPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcch--HHHH-HHHHHHHHHhccc--CcccceEEEEEecCcccccccC
Confidence 11222333321 2246789999999999743210 1111 1122222211111 1111334444333221111111
Q ss_pred H-Hhcc--ccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 001309 958 V-VRRL--PRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 958 L-lrRF--~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg 1007 (1103)
. .+-| ...+.++.-+.++-..+++.+-.. . ....++.|-..|.|...
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCHH
Confidence 1 1122 345666667788888877766322 2 23338888889988643
No 307
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00031 Score=68.12 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISM 869 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~ 869 (1103)
|+|.|+||+||||+|+.+|+.++++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988877664
No 308
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.19 E-value=0.00099 Score=77.75 Aligned_cols=102 Identities=23% Similarity=0.375 Sum_probs=56.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecCccccc-------cccccHHHHHHHHHHHHhcCCeEEEEccc
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEV 904 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~-fi~v~~s~L~s~-------~~G~~e~~i~~lF~~A~~~~PsILfIDEI 904 (1103)
..+++|+.|+|++|+|||+|.-.+...+... -..+.--.++.. +.+.. ..+..+.....+ .-.+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 3467999999999999999999998777431 111111111110 00111 112222111111 2249999999
Q ss_pred cccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC
Q 001309 905 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 905 D~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p 951 (1103)
+.- +.+....+.+++..+. ...+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 743 3333344555555543 1568999999873
No 309
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.17 E-value=0.0058 Score=68.66 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=60.9
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEE-----EecCc-
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFIN-----ISMSS- 871 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~-----v~~s~- 871 (1103)
+.|+--+++.+...+...+..+ . .+.|--+=++|++||||.++++.||+.+ ..+++. .+++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 7788777777777776544432 1 2233557789999999999999999887 233322 12221
Q ss_pred -cccccccccHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 872 -ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 872 -L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
-... ..++..+.+-.-+...+.+|.++||+|.|
T Consensus 157 ~~ie~---Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIED---YKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHH---HHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1111 12333444555566677799999999998
No 310
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.15 E-value=0.00084 Score=85.50 Aligned_cols=160 Identities=24% Similarity=0.298 Sum_probs=101.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc-----c--cHHHHHHHH---HH--HHhcCCeEEEEccccc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVF---SL--ASKIAPSVVFVDEVDS 906 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G-----~--~e~~i~~lF---~~--A~~~~PsILfIDEID~ 906 (1103)
+|++||||.|||+.+.++|.++|+.++.+|.++..++... . ....+...| .. .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999999876554321 1 112233333 00 0111124999999999
Q ss_pred cccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 907 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 907 L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+++ ... + .+..+..... ...+-+|+++|.........+.|....+.|..|+.+.+..-+..++..
T Consensus 440 ~~~-~dR-g-------~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-EDR-G-------GVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hhh-h-------hHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 965 211 1 1222222211 123457777777665555444454455899999999988877777766
Q ss_pred ccc-CCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 987 EEL-ASDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 987 ~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
+.+ ..+..++++...+ ++||++.+..-
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~l 532 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQL 532 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHH
Confidence 443 3455677777776 55666655443
No 311
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0027 Score=80.62 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=97.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--cccccccHHHHHHHHHHHHhc-CCeEEEEcc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDE 903 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~~s~L~--s~~~G~~e~~i~~lF~~A~~~-~PsILfIDE 903 (1103)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+..++... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 678999999999999999999876 3456677765443 345677888999999988844 457889999
Q ss_pred ccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-----CCCcHHHHhccccccccCCCCHHHHHH
Q 001309 904 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREK 978 (1103)
Q Consensus 904 ID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~e 978 (1103)
++-+.+...+.+ .....+-|...+ ....+.+|+||... ..-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 999876655422 112222222111 11348899988632 255789999995 56788999888777
Q ss_pred HHHHHHhh
Q 001309 979 IIRVILAK 986 (1103)
Q Consensus 979 IL~~ll~~ 986 (1103)
|++.+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77776555
No 312
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.12 E-value=0.0007 Score=72.07 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=56.4
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecCccccccccc----cHH-------------HHHHHHHHHHhcCCe
Q 001309 839 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 897 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAI-A~el---g~~fi~v~~s~L~s~~~G~----~e~-------------~i~~lF~~A~~~~Ps 897 (1103)
.|++|.||+|||+.|-.. .... |.+++. |...|.-..+.. .-. ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977555 4333 666554 443222111111 000 001111111111468
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccC
Q 001309 898 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 969 (1103)
Q Consensus 898 ILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~ 969 (1103)
+|+|||++.+++.+.... ......+ +++... ....+-||.+|..+..++..+++..+..+.+.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998776521 1112233 222222 23557888999999999999988665555443
No 313
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.11 E-value=0.0025 Score=72.13 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhhcccCC
Q 001309 556 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 629 (1103)
Q Consensus 556 ~p~Ilf~~d~e~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~p 629 (1103)
.+-||||||++.+... ..+..+.|-..|+.-.+.++||++++.. . +|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-~----------------------~~---- 173 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-R----------------------MD---- 173 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-H----------------------HH----
Confidence 3469999999984221 2334445556666667799999997720 0 01
Q ss_pred CCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHH
Q 001309 630 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 675 (1103)
Q Consensus 630 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 675 (1103)
.+ ......+..+|+..|+++++.++.+...|...+
T Consensus 174 -~~----------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 174 -SF----------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred -HH----------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 01 112356778889999999998888877555443
No 314
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.11 E-value=0.00029 Score=73.65 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA---GANF 864 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el---g~~f 864 (1103)
+++|+|+||+||||+++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999998887 5553
No 315
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.08 E-value=0.0048 Score=68.70 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.6
Q ss_pred cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001309 335 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 370 (1103)
Q Consensus 335 k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 370 (1103)
+.+....+..+.|||.||||| ...+|||++|+.+
T Consensus 33 ~~g~~~~~~~~~vll~GppGt--GKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPGT--GKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCCC--CHHHHHHHHHHHH
Confidence 345556667788999999999 6999999999987
No 316
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.07 E-value=0.0017 Score=76.67 Aligned_cols=171 Identities=23% Similarity=0.303 Sum_probs=95.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----Ccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM----SSITSKW 876 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l-~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~----s~L~s~~ 876 (1103)
.|.|.+++|+.+.-++.---+ ..+. .|+ .+..-+|||-|.|||-|+.|.+-+-+-.-.-++.--- +-|....
T Consensus 332 SIfG~~DiKkAiaClLFgGsr--K~Lp-Dg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR--KRLP-DGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc--ccCC-CcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 588999999999765542111 1111 122 2233569999999999999999886655333322100 0011000
Q ss_pred cccc---HHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh--HHhhhcCCcccCCccEEEEEecCC
Q 001309 877 FGEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 877 ~G~~---e~~i-~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~--LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
...+ +-++ .++..+|.. +|+.|||+|.|- .....+.-..+++ .-..-.|+.+.-+.+.-|+|++|+
T Consensus 409 ~RD~~tReFylEGGAMVLADg---GVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLADG---GVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EecCCcceEEEecceEEEecC---CEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 0000 0000 011122333 899999999982 2222233333332 333345666666788889999987
Q ss_pred CC-------------CCcHHHHhccccccccCCCCHHHH-HHHHHHH
Q 001309 951 PF-------------DLDEAVVRRLPRRLMVNLPDAPNR-EKIIRVI 983 (1103)
Q Consensus 951 p~-------------~Ld~aLlrRF~~~I~l~lPd~eeR-~eIL~~l 983 (1103)
.. ++.+.+++||+.++.+.---.++| ..|.++.
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHh
Confidence 42 344899999998887765444444 3333333
No 317
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.06 E-value=0.0027 Score=74.44 Aligned_cols=98 Identities=23% Similarity=0.402 Sum_probs=62.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc--------ccHHHHHHHHHHHHhcCC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAP 896 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~------~~G--------~~e~~i~~lF~~A~~~~P 896 (1103)
.+..-+||+|+||+|||+|+..+|... +.+++.++..+-... .++ ..+..+..++..+...+|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 344568999999999999999998765 456777765431111 011 012235566677777899
Q ss_pred eEEEEccccccccCCC--CCchhHHHHHHHHhHHhhh
Q 001309 897 SVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 931 (1103)
Q Consensus 897 sILfIDEID~L~~~r~--~~~~~~~l~~vl~~LL~~l 931 (1103)
.+|+||+|..++.... .++.....+.++..|....
T Consensus 160 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 160 DLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred cEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999998864332 1233344555555554443
No 318
>PRK08118 topology modulation protein; Reviewed
Probab=97.05 E-value=0.0012 Score=68.72 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 869 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~ 869 (1103)
..|+|+||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998884
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.04 E-value=0.032 Score=66.88 Aligned_cols=200 Identities=18% Similarity=0.224 Sum_probs=99.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------ccc-----ccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------WFG-----EGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~---------------~~G-----~~e~~i~~lF~~A 891 (1103)
++..++|+|++|+|||+++..+|..+ +..+..+++..+... .++ .....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45679999999999999999998877 556666665432110 111 1112234444444
Q ss_pred HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccc-----cc
Q 001309 892 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR-----RL 966 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~-----~I 966 (1103)
... .+|+||..-++. .. ..++.++.....-.. +...++|+-++...+.++. .++|.. .+
T Consensus 174 ~~~--DvVIIDTAGr~~------~d----~~lm~El~~l~~~~~--pdevlLVvda~~gq~av~~--a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA------LE----EDLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCccc------ch----HHHHHHHHHHHHHhc--ccceeEEEeccccHHHHHH--HHHHHhcCCCCEE
Confidence 432 799999986551 11 123333322222111 1234555554443332221 223432 23
Q ss_pred ccCCCCHHHHHH-HHHHHHhh----------ccc--CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001309 967 MVNLPDAPNREK-IIRVILAK----------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1033 (1103)
Q Consensus 967 ~l~lPd~eeR~e-IL~~ll~~----------~~l--~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~ 1033 (1103)
.+.-.|...|.- ++...... +.+ ....+.+.++.+.=| .+|+..|++.|.... .+. +..+...
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~-~~~-~~~~~~~ 313 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEAL-DEE-EEEKDVE 313 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhh-hHH-HHHHHHH
Confidence 344455444432 33322211 111 123456777776643 358888888775421 110 0011111
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1034 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1034 ~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
.. ..-..+++||..-++++..
T Consensus 314 --~~-------------~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 314 --KM-------------MKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred --HH-------------HcCCcCHHHHHHHHHHHHh
Confidence 11 1124789999998887754
No 320
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.01 E-value=0.0032 Score=75.62 Aligned_cols=97 Identities=26% Similarity=0.423 Sum_probs=61.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------cc--------ccHHHHHHHHHHHHhcCC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAP 896 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~------~G--------~~e~~i~~lF~~A~~~~P 896 (1103)
.+..-+||+|+||+|||+|+..++... +.++++++..+-.... ++ ..+..+..++.......|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 344568999999999999999998765 5677887765421110 11 012235566677777789
Q ss_pred eEEEEccccccccCCCC--CchhHHHHHHHHhHHhh
Q 001309 897 SVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~--~~~~~~l~~vl~~LL~~ 930 (1103)
.+|+||++..++..... ++.....+.++..|...
T Consensus 158 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 158 DLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred CEEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 99999999988643211 23333444555544443
No 321
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.01 E-value=0.0016 Score=67.36 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=37.3
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 872 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---fi~v~~s~L 872 (1103)
++|.++..+.|...+.. .. ...++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888888888887641 11 2334789999999999999999987776332 777776554
No 322
>PRK07261 topology modulation protein; Provisional
Probab=96.96 E-value=0.0018 Score=67.65 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
.|+|+|+||+|||+||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 589999999999999999999999998887653
No 323
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.91 E-value=0.0013 Score=79.82 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=48.0
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 869 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~~ 869 (1103)
-|+|+.|++++++.+.+.+..... ++..+.+-++|.||||+|||+||+.|++.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 588999999999999988743222 112333579999999999999999999887 456666543
No 324
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.90 E-value=0.00097 Score=68.41 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
++..|+|+|+||||||++|+++|+.++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888654
No 325
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.89 E-value=0.0037 Score=67.73 Aligned_cols=37 Identities=35% Similarity=0.583 Sum_probs=30.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
.+..-++|+|+||+|||+++..+|.+. +.+++.+++.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 344568999999999999999998754 6778888876
No 326
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.87 E-value=0.015 Score=75.17 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=82.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---c------------cc---------------ccHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W------------FG---------------EGEKYVKA 886 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~---~------------~G---------------~~e~~i~~ 886 (1103)
+-++|+||+|.|||+++...++..+ ++..++...-.+. + .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999887776 6555544210000 0 00 00112233
Q ss_pred HHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 001309 887 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 965 (1103)
Q Consensus 887 lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 965 (1103)
++..... ..|.+|+|||++.+- + ......+..++. .. +.++.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~---~~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLR---HQ----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHH---hC----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333332 568999999999761 1 112223333332 22 233444445543222321111111223
Q ss_pred cccC----CCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 001309 966 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 966 I~l~----lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg 1007 (1103)
+.+. ..+.++-.+++...+... .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 4444 557788888877654331 245567888899998754
No 327
>PHA02624 large T antigen; Provisional
Probab=96.86 E-value=0.00091 Score=81.46 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=67.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC-Cc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PG 915 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~-~~ 915 (1103)
+.+||+||||||||+++.+|++.++...+.++++.-.+. |.+.--....+.+||++-.-...... +.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777788887653222 11111112257888888432210000 00
Q ss_pred hhHHHHHHHHhHHhhhcCC-cc----cCCccE-----EEEEecCCCCCCcHHHHhccccccccCC
Q 001309 916 EHEAMRKMKNEFMVNWDGL-RT----KDKERV-----LVLAATNRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 916 ~~~~l~~vl~~LL~~ldgl-~~----k~~~~V-----lVIaTTN~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
++- +. =+..+...+||- +- +...++ -+|.|||. ..++.++.-||..++.|..
T Consensus 500 G~~-~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQG-MN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccc-cc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000 00 012233444553 10 101111 24556664 6788888889988887753
No 328
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.84 E-value=0.0042 Score=69.62 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=61.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 873 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~-s~L~ 873 (1103)
.++++++-.+...+.|.+++.. +...++|.||+|+|||++++++..+.. ..++.+.- .++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577787777777777766541 223589999999999999999987763 33444421 1111
Q ss_pred cc-----cc-cccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 874 SK-----WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 874 s~-----~~-G~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
-. .+ .........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 11 1112235667777788899999999994
No 329
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.78 E-value=0.0071 Score=69.52 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=51.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccccHHHHHHHHHHHHhcC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 895 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s----------------~~~G~~e~~i~~lF~~A~~~~ 895 (1103)
+.+-++|+||||||||+||..++.+. +.+++.++...... ......++.+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 44568999999999999988876544 66777776543111 112233445555555556677
Q ss_pred CeEEEEccccccccC
Q 001309 896 PSVVFVDEVDSMLGR 910 (1103)
Q Consensus 896 PsILfIDEID~L~~~ 910 (1103)
+.+|+||-+..|.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998753
No 330
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.76 E-value=0.013 Score=67.47 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=40.3
Q ss_pred cccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001309 304 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 376 (1103)
Q Consensus 304 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~ 376 (1103)
+|++|-.- ++.+..|..+.-..... ....+.+||+||+|| .+..||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~--GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGL--GKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCc--cHHHHHHHHHHHhCCCeEE
Confidence 57776554 77776665444322111 123457999999999 7999999999999876543
No 331
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.72 E-value=0.01 Score=65.08 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=47.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----c--c-----------------------cc--c
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----K--W-----------------------FG--E 879 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s----~--~-----------------------~G--~ 879 (1103)
.+..-++|.||||||||+++..++... +...+.++..+-.. . . .+ .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 344579999999999999986665543 55666665432000 0 0 00 0
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEccccccc
Q 001309 880 GEKYVKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 880 ~e~~i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
.+..+..+...+....|.+++|||+-.++
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 13344555666666678999999998764
No 332
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.018 Score=63.42 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=91.2
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEecCcccccc-ccccHHHHHHHHHHHHh----cCCeEEE
Q 001309 836 CKGILLFGPPG-TGKTMLAKAVATEAGA---------NFINISMSSITSKW-FGEGEKYVKAVFSLASK----IAPSVVF 900 (1103)
Q Consensus 836 ~~gVLL~GPpG-TGKT~LAkAIA~elg~---------~fi~v~~s~L~s~~-~G~~e~~i~~lF~~A~~----~~PsILf 900 (1103)
.+..|+.|..+ +||..++.-++..+.+ .++.+....-.... -.-.-..++++-..+.. ....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46799999998 9999999888877633 23333221100000 00123345555554433 2346999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001309 901 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 980 (1103)
Q Consensus 901 IDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 980 (1103)
|+++|.|. ....+.++..++. ++.++++|..|..+..+.+++++|+ ..+.+..|+...-.++.
T Consensus 95 I~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHH
Confidence 99999982 2344556666555 4467888888888999999999999 67889999988888887
Q ss_pred HHHHhhcc
Q 001309 981 RVILAKEE 988 (1103)
Q Consensus 981 ~~ll~~~~ 988 (1103)
..++....
T Consensus 158 ~~~~~p~~ 165 (263)
T PRK06581 158 SQFIQPIA 165 (263)
T ss_pred HHhccccc
Confidence 77765543
No 333
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.68 E-value=0.0034 Score=67.16 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-cccc---------ccccccHHHHHHHHHHHHhcCCeEEEEcc
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 903 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~----~fi~v~~s-~L~s---------~~~G~~e~~i~~lF~~A~~~~PsILfIDE 903 (1103)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ...+.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999887742 23332211 1110 01122222345566667777899999999
Q ss_pred c
Q 001309 904 V 904 (1103)
Q Consensus 904 I 904 (1103)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 334
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.60 E-value=0.0089 Score=68.83 Aligned_cols=76 Identities=26% Similarity=0.317 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----------------ccccccccHHHHHHHHHHHHhcC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIA 895 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L----------------~s~~~G~~e~~i~~lF~~A~~~~ 895 (1103)
+.+-++|+||||+|||+||-.++.+. +...+.++...- .-......++.+..+-..++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 33558999999999999999886544 667777776331 11112233444444545556667
Q ss_pred CeEEEEccccccccC
Q 001309 896 PSVVFVDEVDSMLGR 910 (1103)
Q Consensus 896 PsILfIDEID~L~~~ 910 (1103)
+.+|+||-+-.|++.
T Consensus 134 ~~lIVIDSvaal~~~ 148 (325)
T cd00983 134 VDLIVVDSVAALVPK 148 (325)
T ss_pred CCEEEEcchHhhccc
Confidence 899999999998753
No 335
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.59 E-value=0.004 Score=61.99 Aligned_cols=32 Identities=53% Similarity=0.863 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 872 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L 872 (1103)
|+++||||+|||++|+.++..++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 789999999999999999999994 44444333
No 336
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.59 E-value=0.008 Score=60.00 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=39.2
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
++.|+.-+.+.+.+++...+..+ . .+.|.-+-++|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57889888888888887544332 1 1222456799999999999999999986
No 337
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=96.57 E-value=0.0037 Score=73.84 Aligned_cols=71 Identities=30% Similarity=0.396 Sum_probs=58.1
Q ss_pred CceeeeecccccceeecCCC--CcccceEEEEeecCCCceeEEEEecCcceEEEc--CeeecCCceEEeecCCeEEecCC
Q 001309 3 GAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDELVFSPS 78 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~--~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vn--g~~~~~~~~~~l~~gde~~f~~~ 78 (1103)
...++||++..|++.|.|+. ||..+|.|... +| . -.|+-. +.+-+.|| |..+.++..+.|+-||+|.+|..
T Consensus 23 ~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g-~-~~l~Dl-StNGT~VN~sg~~l~~~~~~~L~~GD~I~iG~~ 97 (396)
T TIGR03354 23 TNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DG-A-YLLTDL-STNGVFLNGSGSPLGRGNPVRLEQGDRLRLGDY 97 (396)
T ss_pred CCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CC-E-EEEEEC-CCCCeEECCCCCCCCCCCceEcCCCCEEEECCE
Confidence 35689999999999999999 99999999854 33 3 344445 43448999 89999998999999999999865
No 338
>PRK04296 thymidine kinase; Provisional
Probab=96.57 E-value=0.016 Score=61.65 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=40.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC----c----ccccccccc-H----HHHHHHHHHH--HhcCCeEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVV 899 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s----~----L~s~~~G~~-e----~~i~~lF~~A--~~~~PsIL 899 (1103)
-+|++||+|+|||+++..++.++ +..++.+... . +.+. .|.. + .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47999999999999998887765 5555555331 1 1111 1110 0 1122333333 22456899
Q ss_pred EEcccccc
Q 001309 900 FVDEVDSM 907 (1103)
Q Consensus 900 fIDEID~L 907 (1103)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 339
>PRK13947 shikimate kinase; Provisional
Probab=96.51 E-value=0.0024 Score=65.94 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 340
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.51 E-value=0.0061 Score=71.44 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=44.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEecCc---------------cccccccccHHHHH---HHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGA-----N-FINISMSS---------------ITSKWFGEGEKYVK---AVFSLAS 892 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~-----~-fi~v~~s~---------------L~s~~~G~~e~~i~---~lF~~A~ 892 (1103)
...||+||||+|||+|++.|++.... . ++.+.... +.+.+-...+..++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999987632 2 22222111 22222223333333 3445554
Q ss_pred hc----CCeEEEEccccccc
Q 001309 893 KI----APSVVFVDEVDSML 908 (1103)
Q Consensus 893 ~~----~PsILfIDEID~L~ 908 (1103)
.. ...+||||||+++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 32 45799999999986
No 341
>PRK03839 putative kinase; Provisional
Probab=96.50 E-value=0.0022 Score=66.99 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987765
No 342
>PRK13695 putative NTPase; Provisional
Probab=96.49 E-value=0.013 Score=60.98 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987765
No 343
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.47 E-value=0.013 Score=63.09 Aligned_cols=36 Identities=36% Similarity=0.555 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
+..-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34558999999999999999998765 5677777653
No 344
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.41 E-value=0.003 Score=63.72 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988665
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.40 E-value=0.0085 Score=64.09 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
+-.+|.||||||||++++.++..+ +..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 458899999999999999987655 6667666643
No 346
>PRK10536 hypothetical protein; Provisional
Probab=96.38 E-value=0.032 Score=62.30 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=32.4
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.+..|.+.......+...+.. ..-+++.||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566666666666555431 136999999999999999999875
No 347
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.37 E-value=0.0052 Score=68.50 Aligned_cols=96 Identities=21% Similarity=0.378 Sum_probs=59.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 873 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~-s~L~ 873 (1103)
.++++++-.....+.+.+++.... +...++|+.||+|+|||+++++++.+.. ..++.+.- .++.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 466677666666666666554311 1235799999999999999999998873 34444432 1111
Q ss_pred cc------cc-cccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 874 SK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 874 s~------~~-G~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
-. .. .........++..+.+..|.+|+|.||.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 00 00 1123346667778888999999999994
No 348
>PRK13948 shikimate kinase; Provisional
Probab=96.37 E-value=0.0036 Score=66.35 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456788999999999999999999999999998666
No 349
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0028 Score=64.54 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
++||++|-||||||+++..||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999998775
No 350
>PRK00625 shikimate kinase; Provisional
Probab=96.35 E-value=0.0033 Score=66.08 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+|+|+|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.32 E-value=0.032 Score=61.29 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=28.2
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 830 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 830 ~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
+| ..+...+||+||||+|||++|..++.+. |-+.+.++.
T Consensus 16 GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 45 3455779999999999999998776542 555555543
No 352
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.011 Score=69.30 Aligned_cols=109 Identities=23% Similarity=0.322 Sum_probs=57.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCcccc----------ccccc------cHHHHHHHHHHHHhc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSITS----------KWFGE------GEKYVKAVFSLASKI 894 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el----g-~~fi~v~~s~L~s----------~~~G~------~e~~i~~lF~~A~~~ 894 (1103)
...++|.||+|+|||+++..||..+ | ..+..+....+.. ...+- ....+.... .+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHhc
Confidence 3569999999999999999998764 3 2444444333210 00010 011112211 2223
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHH
Q 001309 895 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 958 (1103)
Q Consensus 895 ~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aL 958 (1103)
...+|+||..... + ..... .+.+..+..... .-..++|+.+|+..+.+.+.+
T Consensus 215 ~~DlVLIDTaG~~------~-~d~~l----~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 215 NKHMVLIDTIGMS------Q-RDRTV----SDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCCEEEEcCCCCC------c-ccHHH----HHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 4589999999643 1 11112 222223322221 124578888888777776543
No 353
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.32 E-value=0.025 Score=67.04 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=68.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 917 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~ 917 (1103)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..+.......||||||+.+ ++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhHH
Confidence 799999999999999988888775556666655543332211 11222333333335579999999876 2222
Q ss_pred HHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC--CCCcHHHHhccccccccCCCCHHHHHH
Q 001309 918 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 978 (1103)
Q Consensus 918 ~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p--~~Ld~aLlrRF~~~I~l~lPd~eeR~e 978 (1103)
..++.+ .+.. +.++++.+++... ..+.+.+..|. ..+.+.+.+..+...
T Consensus 111 ~~lk~l-------~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 111 RALKYL-------YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHHHHH-------Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 233222 2221 1134444444321 23334555574 567777788777754
No 354
>PRK14532 adenylate kinase; Provisional
Probab=96.30 E-value=0.0035 Score=65.93 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+|+|.||||+|||++|+.||+.++++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766544
No 355
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.30 E-value=0.033 Score=62.04 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGA 862 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~ 862 (1103)
...++|+||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 356999999999999999999988743
No 356
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.29 E-value=0.02 Score=69.06 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc--------cHHHHHHHHHHHHhcCC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 896 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~------~~G~--------~e~~i~~lF~~A~~~~P 896 (1103)
.+..-+||.|+||+|||+|+..++... +.++++++..+-... .++- .+..+..+...+.+.+|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344568999999999999999987655 456777776432111 0110 11234556666677789
Q ss_pred eEEEEcccccccc
Q 001309 897 SVVFVDEVDSMLG 909 (1103)
Q Consensus 897 sILfIDEID~L~~ 909 (1103)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 357
>PRK14974 cell division protein FtsY; Provisional
Probab=96.29 E-value=0.031 Score=64.86 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
+.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999888766 5555555543
No 358
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.29 E-value=0.02 Score=60.13 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-----------------ccccHHHHHHHHHHHHhcCCeEEEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 901 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~-----------------~G~~e~~i~~lF~~A~~~~PsILfI 901 (1103)
+||.|++|+|||++|..++...+.+.+++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877777777654321110 011112333333221 14679999
Q ss_pred ccccccccCC
Q 001309 902 DEVDSMLGRR 911 (1103)
Q Consensus 902 DEID~L~~~r 911 (1103)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 359
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.27 E-value=0.0036 Score=65.36 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
|+|+||||+|||++|+.+|.++++..+ ++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 789999999999999999999986554 444443
No 360
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.25 E-value=0.052 Score=60.10 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccc--------c-c-----ccHHHHHH----HHHHHH--
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVKA----VFSLAS-- 892 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~L~s~~--------~-G-----~~e~~i~~----lF~~A~-- 892 (1103)
.+-++.+.|++|||||+++..+...+. +..+.+-++.....+ + . +.+..+.. +-..++
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 345799999999999999999987763 233333333211111 0 0 01111111 111111
Q ss_pred -h---cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccc
Q 001309 893 -K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 968 (1103)
Q Consensus 893 -~---~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l 968 (1103)
. .++.+|++|++..- ..-...+..+... | ..-++-+|..+.....+++.++.-.+..+.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 1 22579999997420 0112233344321 1 2356888888888899999987767666655
Q ss_pred CCCCHHHHHHHHHHH
Q 001309 969 NLPDAPNREKIIRVI 983 (1103)
Q Consensus 969 ~lPd~eeR~eIL~~l 983 (1103)
. -+..+...+++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 4 4556655555554
No 361
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.24 E-value=0.013 Score=76.48 Aligned_cols=140 Identities=18% Similarity=0.243 Sum_probs=85.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------ccccccccH---HHHHHHHHHHHhcCCeEEEEccccccc
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGEGE---KYVKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L------~s~~~G~~e---~~i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
.+||.||+.+|||+....+|.+.|..|++++--+. .+.|+.... ..-.++...|.+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 59999999999999999999999999999986442 222221111 11223444444422 46899999643
Q ss_pred cCCCCCchhHHHHHHHHhHHhhh---cCCcccCCccEEEEEecCCCC------CCcHHHHhccccccccCCCCHHHHHHH
Q 001309 909 GRRENPGEHEAMRKMKNEFMVNW---DGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKI 979 (1103)
Q Consensus 909 ~~r~~~~~~~~l~~vl~~LL~~l---dgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~l~lPd~eeR~eI 979 (1103)
....-+++++++..-...+ ...--.+...+++.||.|+|. -|..+++.|| ..++|.--..++...|
T Consensus 968 ----pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~I 1042 (4600)
T COG5271 968 ----PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEI 1042 (4600)
T ss_pred ----cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHH
Confidence 1122333333322110000 000012346788888889874 5778999999 5667766666677777
Q ss_pred HHHHH
Q 001309 980 IRVIL 984 (1103)
Q Consensus 980 L~~ll 984 (1103)
++..+
T Consensus 1043 Lh~rc 1047 (4600)
T COG5271 1043 LHGRC 1047 (4600)
T ss_pred HhccC
Confidence 76543
No 362
>PRK13949 shikimate kinase; Provisional
Probab=96.24 E-value=0.0039 Score=65.19 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 363
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.23 E-value=0.0099 Score=66.88 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=43.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cCccccc-------cccc------cHHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 892 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~----------~fi~v~-~s~L~s~-------~~G~------~e~~i~~lF~~A~ 892 (1103)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... ..+. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 1111111 0010 1112345677777
Q ss_pred hcCCeEEEEccc
Q 001309 893 KIAPSVVFVDEV 904 (1103)
Q Consensus 893 ~~~PsILfIDEI 904 (1103)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999997
No 364
>PRK06217 hypothetical protein; Validated
Probab=96.22 E-value=0.0043 Score=65.28 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|+|.|+||+|||++|++|++.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887765
No 365
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.03 Score=66.10 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=67.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcE--EEEecCcc------------ccc--cccccHHHHHHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA-------GANF--INISMSSI------------TSK--WFGEGEKYVKAVFSLAS 892 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el-------g~~f--i~v~~s~L------------~s~--~~G~~e~~i~~lF~~A~ 892 (1103)
+..++|+||+|+|||+++..+|..+ +..+ +.+|+... .+- ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4579999999999999999998765 2333 44444211 000 0111122233333322
Q ss_pred hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc----ccccc
Q 001309 893 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 968 (1103)
Q Consensus 893 ~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~~I~l 968 (1103)
....+|+||.+.++. ..... +.++...++.... +...++|+.+|.....+...+ .+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~-~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEIF-HQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHH-HHhcCCCCCEEEE
Confidence 345799999998762 11111 2223223332221 225678888887766666433 4331 23445
Q ss_pred CCCCHHHHH
Q 001309 969 NLPDAPNRE 977 (1103)
Q Consensus 969 ~lPd~eeR~ 977 (1103)
.-.|...+.
T Consensus 320 TKlDet~~~ 328 (388)
T PRK12723 320 TKLDETTCV 328 (388)
T ss_pred EeccCCCcc
Confidence 555554443
No 366
>PRK14531 adenylate kinase; Provisional
Probab=96.20 E-value=0.0047 Score=65.05 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
..|+|+||||+|||++++.+|..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999887654
No 367
>PRK06762 hypothetical protein; Provisional
Probab=96.19 E-value=0.012 Score=60.68 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
.-++|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999996666666654443
No 368
>PHA02774 E1; Provisional
Probab=96.18 E-value=0.036 Score=67.81 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 869 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~-v~~ 869 (1103)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 579999999999999999999999655544 553
No 369
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.18 E-value=0.036 Score=60.50 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~ 869 (1103)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 454569999999999999999886554 777777774
No 370
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.17 E-value=0.06 Score=58.41 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=50.5
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccc-----------------------------ccc
Q 001309 830 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT-----------------------------SKW 876 (1103)
Q Consensus 830 ~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~-----------------------------s~~ 876 (1103)
+| ..+...+||.||||+|||.|+..++.+. |-+++.++..+-. ...
T Consensus 14 GG-ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 14 GG-IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CC-CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 44 3344679999999999999999876433 6777776653200 000
Q ss_pred ----ccccHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 877 ----FGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 877 ----~G~~e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
....+..+..+........+.+++||.+..+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123445566666677778899999999998
No 371
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.17 E-value=0.018 Score=69.86 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 872 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s-~L 872 (1103)
..++++++-.++..+.+..++.. +..-+|++||+|+|||++..++..++. .+++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34677888778878787776541 222379999999999999998877763 344444321 11
Q ss_pred c-----ccccc-ccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 873 T-----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 873 ~-----s~~~G-~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
. ...+. ........+...+.++.|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 10011 111234455666678899999999994
No 372
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=96.15 E-value=0.0085 Score=49.57 Aligned_cols=51 Identities=31% Similarity=0.439 Sum_probs=42.8
Q ss_pred eeeeccc-ccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeee
Q 001309 6 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVH 59 (1103)
Q Consensus 6 ~tvg~~~-~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~ 59 (1103)
++||+.. .|++.|.|+.+|...|+|..-. .+ ...++-.++..-+.|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~-~~--~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDG-GG--RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECC-CC--eEEEEECCCCCCeeECCEEC
Confidence 5899999 9999999999999999998643 23 46788888777789999864
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=96.15 E-value=0.16 Score=61.00 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc---------------cc-----cccHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 890 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~s~---------------~~-----G~~e~~i~~lF~~ 890 (1103)
++.-++++|++|+|||+++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999888887655 566666666432111 01 1223344455566
Q ss_pred HHhcCCeEEEEcccccc
Q 001309 891 ASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 891 A~~~~PsILfIDEID~L 907 (1103)
++.....+|+||=.-++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999988655
No 374
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.13 E-value=0.016 Score=67.93 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-----------cccccccHHHHHHHHHHHHhcCCeEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s-~L~-----------s~~~G~~e~~i~~lF~~A~~~~PsILf 900 (1103)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ....|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 345554322 110 011121122345566777888999999
Q ss_pred Ecccc
Q 001309 901 VDEVD 905 (1103)
Q Consensus 901 IDEID 905 (1103)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 375
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.014 Score=63.45 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecC-ccccccccc-------------cHHHHHHHHHHHHhc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGE-------------GEKYVKAVFSLASKI 894 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el--g------~~fi~v~~s-~L~s~~~G~-------------~e~~i~~lF~~A~~~ 894 (1103)
.+.||.||||+|||++.+-||+-+ + ..+.-++-. ++.+-..|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 479999999999999999999876 2 233444432 222221111 122334566777889
Q ss_pred CCeEEEEcccccc
Q 001309 895 APSVVFVDEVDSM 907 (1103)
Q Consensus 895 ~PsILfIDEID~L 907 (1103)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999654
No 376
>PRK09354 recA recombinase A; Provisional
Probab=96.12 E-value=0.031 Score=64.95 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----------------ccccccccHHHHHHHHHHHHhcC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIA 895 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L----------------~s~~~G~~e~~i~~lF~~A~~~~ 895 (1103)
+.+-++|+||+|||||+|+-.++... +...+.++...- .-......++.+..+-...+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 33558999999999999999876443 667777776441 11111223444444444555667
Q ss_pred CeEEEEcccccccc
Q 001309 896 PSVVFVDEVDSMLG 909 (1103)
Q Consensus 896 PsILfIDEID~L~~ 909 (1103)
+.+|+||-|-.|.+
T Consensus 139 ~~lIVIDSvaaL~~ 152 (349)
T PRK09354 139 VDLIVVDSVAALVP 152 (349)
T ss_pred CCEEEEeChhhhcc
Confidence 89999999998875
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.11 E-value=0.062 Score=58.72 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=47.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc--------------cc-------------------c
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KW-------------------F 877 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s--------------~~-------------------~ 877 (1103)
.+..-++++|+||+|||+|+.+++.+. +.+++.++..+-.. .+ .
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 344669999999999999999997653 56666665432100 00 0
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccc
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
...+..+..+........|.+|+||++..+.
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112334444455555688999999998663
No 378
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.10 E-value=0.011 Score=68.67 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-ccc---------cccccccHHHHHHHHHHHHhcCCeEEEEc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 902 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg----~~fi~v~~s-~L~---------s~~~G~~e~~i~~lF~~A~~~~PsILfID 902 (1103)
..+||.||+|+|||+++++++.... ..++.+.-+ ++. ....+.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4689999999999999999988764 233333211 110 11112212234556667778899999999
Q ss_pred ccc
Q 001309 903 EVD 905 (1103)
Q Consensus 903 EID 905 (1103)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 993
No 379
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.10 E-value=0.0051 Score=61.29 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
|.|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 380
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.10 E-value=0.022 Score=59.73 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=45.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHH--------------------HHHHHHHHHHhcCCe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 897 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~--------------------~i~~lF~~A~~~~Ps 897 (1103)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998877777665432111 1111 233333221 23457
Q ss_pred EEEEcccccccc
Q 001309 898 VVFVDEVDSMLG 909 (1103)
Q Consensus 898 ILfIDEID~L~~ 909 (1103)
+++||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999998864
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.10 E-value=0.032 Score=59.93 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEecCc-cccc--cccccHHHHHHHHHHHHhcC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 895 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e-----lg~~fi-------------~v~~s~-L~s~--~~G~~e~~i~~lF~~A~~~~ 895 (1103)
+-++|.||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 56899999999999999999743 344321 111111 0000 01111133555666555457
Q ss_pred CeEEEEcccc
Q 001309 896 PSVVFVDEVD 905 (1103)
Q Consensus 896 PsILfIDEID 905 (1103)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999984
No 382
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.10 E-value=0.0048 Score=64.76 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 383
>PRK05973 replicative DNA helicase; Provisional
Probab=96.08 E-value=0.048 Score=60.31 Aligned_cols=37 Identities=38% Similarity=0.517 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
..+..-+||.|+||+|||+++-.++.+. |.+++.++.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 3455679999999999999999887654 666666654
No 384
>PRK08233 hypothetical protein; Provisional
Probab=96.06 E-value=0.033 Score=57.71 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 869 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg-~~fi~v~~ 869 (1103)
.-|.|.|+||+||||+|+.|+..++ ..++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999985 44554443
No 385
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.06 E-value=0.016 Score=69.44 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---EEecC-
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISMS- 870 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi---~v~~s- 870 (1103)
....+|++++......+.+.+.+. +|..=+|++||.|+|||+...++..+++.+.. .+--+
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPV 296 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPV 296 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCe
Confidence 335678889988888888888764 23223899999999999999999998865443 22211
Q ss_pred cccccccc------ccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 871 SITSKWFG------EGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 871 ~L~s~~~G------~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
++.-..+. ...-.....+...-++.|.||.|.||.
T Consensus 297 E~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 297 EYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11000000 001123445555678899999999995
No 386
>PRK14530 adenylate kinase; Provisional
Probab=96.06 E-value=0.0061 Score=65.83 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.||||+|||++++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 387
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.05 E-value=0.044 Score=63.56 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
.+.+.+.+...|..++-. .. ..-|..+.|+|..|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 455667777777776532 11 123456899999999999999999999999999888754
No 388
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.04 E-value=0.035 Score=72.30 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=81.8
Q ss_pred CCceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhc--------------CCeEE
Q 001309 835 PCKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVV 899 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~L-AkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~--------------~PsIL 899 (1103)
..++++++||||+|||+| ..++-.+.-..++.+|-+.-.. ++..+..+-...... +-.||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 347899999999999995 5677777777777777543111 111222222111111 11499
Q ss_pred EEccccccccCCCCCc---hhHHHHHHHHhHHhhhcCCccc------CCccEEEEEecCCCCC-----CcHHHHhccccc
Q 001309 900 FVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFD-----LDEAVVRRLPRR 965 (1103)
Q Consensus 900 fIDEID~L~~~r~~~~---~~~~l~~vl~~LL~~ldgl~~k------~~~~VlVIaTTN~p~~-----Ld~aLlrRF~~~ 965 (1103)
|.|||+ | +....-. .--.++.++.. .|+... .-.++++.+++|++.+ ..+.++||- ..
T Consensus 1568 FcDeIn-L-p~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~ 1639 (3164)
T COG5245 1568 FCDEIN-L-PYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VF 1639 (3164)
T ss_pred EeeccC-C-ccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eE
Confidence 999998 3 3322211 11122222221 122211 1157899999998754 345666653 45
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 001309 966 LMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 966 I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
+.+..|.......|.+.++..
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHH
Confidence 778899999998988888765
No 389
>PRK13764 ATPase; Provisional
Probab=96.03 E-value=0.018 Score=71.23 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=41.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cCcc-----ccccccccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~-~s~L-----~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
.++|++||||+||||++++++.++. ..+..+. ..++ ...+.. ...........+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3332332 1111 111110 00112223333456789999999994
No 390
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.03 E-value=0.025 Score=61.46 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 871 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~ 871 (1103)
+..-+.|+||||+|||+|+..++... +..++.++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 34558999999999999999997543 25677777644
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.02 E-value=0.0058 Score=61.76 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
++|+|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 392
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.01 E-value=0.021 Score=65.24 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-------cccccccHHHHHHHHHHHHhcCCeEEEEcc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 903 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s-~L~-------s~~~G~~e~~i~~lF~~A~~~~PsILfIDE 903 (1103)
.++|+.|++|+|||+++++++.... ..++.+.-. ++. .-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998762 233333211 110 000111111566788888899999999999
Q ss_pred cc
Q 001309 904 VD 905 (1103)
Q Consensus 904 ID 905 (1103)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 93
No 393
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.01 E-value=0.059 Score=62.12 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=55.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecCccccc-------ccccc---HHHHHHHHHHHHhcCCeEEEE
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEG---EKYVKAVFSLASKIAPSVVFV 901 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~f-i~v~~s~L~s~-------~~G~~---e~~i~~lF~~A~~~~PsILfI 901 (1103)
..+++|+.|+|+-|.|||+|.-..-+.+..+- ..+.--.++.. ..|.. .....+++. .-.||+|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~-----~~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA-----ETRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh-----cCCEEEe
Confidence 34679999999999999999999887763321 11110010000 11211 111111111 2259999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 902 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 902 DEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
||++.= ....-..+.+++++|+. ..|.+++|+|.
T Consensus 137 DEF~Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 137 DEFEVT-----DIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred eeeeec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 999742 22333445555655542 46899999986
No 394
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.045 Score=60.89 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~ 869 (1103)
.+..-++|.|+||+|||+++..++..+ +.++..++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344568999999999999999886654 666666665
No 395
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.00 E-value=0.32 Score=55.93 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=66.3
Q ss_pred HHHHHHHHHhc---CCeEEEEccccccccCCCC-----CchhHHHHHHHHhHHhhhcCCcccCCccEE-EEEecCC---C
Q 001309 884 VKAVFSLASKI---APSVVFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 951 (1103)
Q Consensus 884 i~~lF~~A~~~---~PsILfIDEID~L~~~r~~-----~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl-VIaTTN~---p 951 (1103)
+..++.+.... .|.++-||++..|+....- ..-+.....+...|+..+.+-..-.+..++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 44455555432 3667889999999865311 112223344555666554443332223332 2555532 2
Q ss_pred C--CCcHHHHhccc---------------------cccccCCCCHHHHHHHHHHHHhhcccC----CcccHHHHHHHcCC
Q 001309 952 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELA----SDVDLEGIANMADG 1004 (1103)
Q Consensus 952 ~--~Ld~aLlrRF~---------------------~~I~l~lPd~eeR~eIL~~ll~~~~l~----~dvdl~~LA~~TeG 1004 (1103)
. .++.++..+-. ..+.++..+.+|-..+++.+....-+. ++...+.+...+.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 45555444321 156778888899899998887764333 22233444444443
Q ss_pred CcHHHHH
Q 001309 1005 YSGSDLK 1011 (1103)
Q Consensus 1005 ySg~DL~ 1011 (1103)
++++|.
T Consensus 302 -Np~el~ 307 (309)
T PF10236_consen 302 -NPRELE 307 (309)
T ss_pred -CHHHhc
Confidence 455543
No 396
>PRK10436 hypothetical protein; Provisional
Probab=95.97 E-value=0.023 Score=68.55 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=60.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc-
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI- 872 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s-~L- 872 (1103)
.++++++-.+...+.+++++.. +..-+|++||+|+|||++..++..+++ .+++.+--+ ++
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 4778888778888888776542 323589999999999999888877763 334443311 11
Q ss_pred ----cccccc-ccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 873 ----TSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 873 ----~s~~~G-~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
....++ ........+...+.+..|.||+|.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 100111 111235566677778899999999994
No 397
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.96 E-value=0.033 Score=60.17 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEecCc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 871 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g------~~fi~v~~s~ 871 (1103)
.+..-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 344568999999999999999997654 3 5667777643
No 398
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.96 E-value=0.36 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.++..|.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557899999999999999999987773
No 399
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.95 E-value=0.013 Score=56.28 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+++|+||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876665
No 400
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0074 Score=63.80 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
.|+|.||||+||||+|+.||+.++++-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999554443
No 401
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.88 E-value=0.067 Score=60.58 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=27.4
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 344 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 344 s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
.+-+||+||+|+ .+.+||+++|+.++.++..++
T Consensus 30 ~~~~ll~Gp~G~--GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 30 LDHLLLYGPPGL--GKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 356899999999 699999999999987665543
No 402
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.85 E-value=0.0078 Score=66.11 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..|+|.||||+|||++|+.+|+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998777654
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.85 E-value=0.055 Score=58.09 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=40.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--------------cc-c----cc-ccHHHHHHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------SK-W----FG-EGEKYVKAVFSLAS 892 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~--------------s~-~----~G-~~e~~i~~lF~~A~ 892 (1103)
|+-++|.||+|+|||+.+..+|.++ +..+--+++.... +- . .. .....+.+.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999888888776 4444333332211 00 0 01 12233445555555
Q ss_pred hcCCeEEEEccccc
Q 001309 893 KIAPSVVFVDEVDS 906 (1103)
Q Consensus 893 ~~~PsILfIDEID~ 906 (1103)
...-.+|+||=..+
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 54557999998754
No 404
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.0068 Score=63.59 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.+|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998876
No 405
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.039 Score=59.28 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
=++|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999998
No 406
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.84 E-value=0.024 Score=65.64 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cCcccc-----------cc--ccccHHHHHHHHHHHHhcCCeEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~-~s~L~s-----------~~--~G~~e~~i~~lF~~A~~~~PsILf 900 (1103)
.++|++|++|+|||+++++++..... .++.+. ..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 58999999999999999999988742 333321 111110 00 111222456788888999999999
Q ss_pred Ecccc
Q 001309 901 VDEVD 905 (1103)
Q Consensus 901 IDEID 905 (1103)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 407
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.83 E-value=0.0073 Score=63.04 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
+-++|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4699999999999999999999998877765543
No 408
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.83 E-value=0.07 Score=59.61 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
.+..-+||+||||||||+++..+|.+. |-+.+.++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 344568999999999999999886643 455555553
No 409
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.82 E-value=0.0068 Score=62.21 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
++|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999876653
No 410
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.80 E-value=0.0095 Score=61.62 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..++|+|++|+|||++++.+|..++++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988665
No 411
>PRK14528 adenylate kinase; Provisional
Probab=95.79 E-value=0.0091 Score=63.27 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+.++|.||||+|||++|+.++..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877654
No 412
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.78 E-value=0.044 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTM-LAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~-LAkAIA~el 860 (1103)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 413
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.76 E-value=0.028 Score=69.58 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC----
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS---- 870 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s---- 870 (1103)
.++++++-.+...+.+.+++.. +..-+|++||+|+|||++..++..+++ .+++.+--+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 4678888888888888776642 223489999999999999988887774 334433221
Q ss_pred --cccccccc-ccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 871 --SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 871 --~L~s~~~G-~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
.+....+. ........+...+.+..|.||+|.||-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11111111 111235566677788899999999994
No 414
>PRK06547 hypothetical protein; Provisional
Probab=95.75 E-value=0.01 Score=62.45 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
++.-|+|.|++|+|||++|+.+++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467899999999999999999999988877654
No 415
>PF13479 AAA_24: AAA domain
Probab=95.69 E-value=0.035 Score=60.08 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=37.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc-cccc-----c-cccHHHHHHHHHHH--HhcCCeEEEEcccccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L-~s~~-----~-G~~e~~i~~lF~~A--~~~~PsILfIDEID~L 907 (1103)
..++|||+||+|||++|..+ -+.-|+.+..... ...+ + -..-..+.+.+..+ ....-.+|+||.++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL---PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC---CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 57999999999999999888 1111233332210 0000 0 01122344444332 2334579999988876
No 416
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.68 E-value=0.027 Score=57.58 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 871 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~ 871 (1103)
++|+|+||+|||++|+.++..+ +.+.+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 6899999999999999999988 66777776543
No 417
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.68 E-value=0.01 Score=61.79 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.-++|.||||+|||++++.++..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3689999999999999999999998765443
No 418
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.67 E-value=0.033 Score=58.14 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+...++|+||+||||++|.+++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345679999999999999999999754
No 419
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.67 E-value=0.018 Score=66.96 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=79.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEE----EecC--cccccc----ccccH----HHHHHHHHHH
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFIN----ISMS--SITSKW----FGEGE----KYVKAVFSLA 891 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg-------~~fi~----v~~s--~L~s~~----~G~~e----~~i~~lF~~A 891 (1103)
..||+|+.|||.-|||||+|.-..-..+. ++|.. ++-. ++.... .+... .-+.-+-.+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45789999999999999999987764331 11110 0000 000000 00000 0011111111
Q ss_pred HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-CCCCcHHHHhccccccccCC
Q 001309 892 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~l~l 970 (1103)
. ..-.+|.+||+..- .-...-.+++++..|+. ..|+++||+|+ |++|-..-+.|= ..++
T Consensus 191 a-~ea~lLCFDEfQVT-----DVADAmiL~rLf~~Lf~----------~GvVlvATSNR~P~dLYknGlQR~---~F~P- 250 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVT-----DVADAMILKRLFEHLFK----------NGVVLVATSNRAPEDLYKNGLQRE---NFIP- 250 (467)
T ss_pred h-hhceeeeechhhhh-----hHHHHHHHHHHHHHHHh----------CCeEEEEeCCCChHHHhhcchhhh---hhhh-
Confidence 1 11378999999642 11222244445444431 46899999987 455554333321 1111
Q ss_pred CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcC-CC--cHH-HHHHHHHH
Q 001309 971 PDAPNREKIIRVILAKEELASDVDLEGIANMAD-GY--SGS-DLKNLCVT 1016 (1103)
Q Consensus 971 Pd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~Te-Gy--Sg~-DL~~L~~~ 1016 (1103)
-..+|+..+.-..+.+.+|+...+.-.+ +| .+. |...+++.
T Consensus 251 -----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~ 295 (467)
T KOG2383|consen 251 -----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKE 295 (467)
T ss_pred -----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHH
Confidence 2345666666677778888884443332 22 333 55555543
No 420
>PLN02200 adenylate kinase family protein
Probab=95.66 E-value=0.012 Score=64.82 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
++..++|.|+||+|||++|+.+|.++|+.. +++.++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 345689999999999999999999998754 5555554
No 421
>PRK13946 shikimate kinase; Provisional
Probab=95.64 E-value=0.0098 Score=62.79 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998776
No 422
>PRK02496 adk adenylate kinase; Provisional
Probab=95.64 E-value=0.01 Score=62.19 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999877654
No 423
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.62 E-value=0.014 Score=69.10 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..++++.||+|||||+|+.+++.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 368999999999999999999876
No 424
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.60 E-value=0.012 Score=61.67 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 869 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~ 869 (1103)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 479999999999999999999999999887764
No 425
>PRK04328 hypothetical protein; Provisional
Probab=95.58 E-value=0.1 Score=57.96 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=26.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 830 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 830 ~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
+|+ .+...+||+||||+|||.|+..++.+. |-+.+.++
T Consensus 18 GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 18 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 443 445679999999999999998876542 44544444
No 426
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.57 E-value=0.3 Score=55.15 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
+++-+++.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678899999999999999998776 5566556554
No 427
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.56 E-value=0.011 Score=63.69 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
|+|+||||+|||++|+.||..++++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877654
No 428
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.56 E-value=0.029 Score=59.33 Aligned_cols=70 Identities=30% Similarity=0.462 Sum_probs=45.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc---cc----------ccccHHHHHHHHHHHHhcCCeEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KW----------FGEGEKYVKAVFSLASKIAPSVV 899 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s-~L~s---~~----------~G~~e~~i~~lF~~A~~~~PsIL 899 (1103)
...++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+........++..+.+..|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 35799999999999999999998763 222222211 1100 00 01112345667777888899999
Q ss_pred EEcccc
Q 001309 900 FVDEVD 905 (1103)
Q Consensus 900 fIDEID 905 (1103)
++.|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999993
No 429
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.54 E-value=0.021 Score=65.48 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..+...|+|+|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456678999999999999999999999999999554
No 430
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.53 E-value=0.034 Score=66.90 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=36.9
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcC
Q 001309 301 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 371 (1103)
Q Consensus 301 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~ 371 (1103)
-..|||+|- ..+..+.++..|-.+ + .+-....+.++|+||+|+ ....|++|+|++..
T Consensus 117 ~~~tfd~fv--~g~~n~~a~~~~~~~-------~---~~~~~~~~~l~l~G~~G~--GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNFV--VGKSNRLAHAAALAV-------A---ENPGKAYNPLFIYGGVGL--GKTHLLHAIGNYIL 173 (450)
T ss_pred CCCcccccc--cCCCcHHHHHHHHHH-------H---hCcCccCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 345899974 345555544443332 1 111123355999999999 79999999999863
No 431
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.52 E-value=0.053 Score=56.11 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccc--------ccccc-----ccHHHHHHHHHHHHhcCCeE
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFG-----EGEKYVKAVFSLASKIAPSV 898 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~s~L~--------s~~~G-----~~e~~i~~lF~~A~~~~PsI 898 (1103)
.+...+.|.||+|+|||+|.+.|+..... --+.++...+. ....+ +..+.-+-.+..|--..|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 35567999999999999999999876521 11222221111 00010 11122333456666778999
Q ss_pred EEEccccc
Q 001309 899 VFVDEVDS 906 (1103)
Q Consensus 899 LfIDEID~ 906 (1103)
|++||--.
T Consensus 104 lllDEP~~ 111 (163)
T cd03216 104 LILDEPTA 111 (163)
T ss_pred EEEECCCc
Confidence 99999853
No 432
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.52 E-value=0.09 Score=56.23 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA 857 (1103)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 433
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.51 E-value=0.13 Score=64.93 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=88.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcE--EEEecCcc-----ccc-------c---cc-------------ccHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA--GANF--INISMSSI-----TSK-------W---FG-------------EGEKY 883 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el--g~~f--i~v~~s~L-----~s~-------~---~G-------------~~e~~ 883 (1103)
.+-+||.-|.|.|||+++...+... +..+ +.++-++. .+. + .+ ..+..
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 3569999999999999999997643 4444 44443331 000 0 01 11224
Q ss_pred HHHHHH-HHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-CC-CCcHHHHh
Q 001309 884 VKAVFS-LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PF-DLDEAVVR 960 (1103)
Q Consensus 884 i~~lF~-~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-p~-~Ld~aLlr 960 (1103)
+..+|. .+....|.++|||+.+.+- ++.-++.++. |+.. .+.++.+|.+|.. |. .+..--++
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l~f----Ll~~-------~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLIS----DPALHEALRF----LLKH-------APENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccC----cccHHHHHHH----HHHh-------CCCCeEEEEEeccCCCCcccceeeh
Confidence 555554 3456679999999999872 2233333333 3322 2466777777743 32 22211111
Q ss_pred ccccccccC----CCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH-HHHHH
Q 001309 961 RLPRRLMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS-DLKNL 1013 (1103)
Q Consensus 961 RF~~~I~l~----lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~-DL~~L 1013 (1103)
+..+++. ..+.+|-.++++..... . .+..+++.|-..++|+..+ .|..|
T Consensus 182 --~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~-Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 182 --DELLEIGSEELRFDTEEAAAFLNDRGSL-P-LDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred --hhHHhcChHhhcCChHHHHHHHHHcCCC-C-CChHHHHHHHhhcccHHHHHHHHHH
Confidence 1112222 24677777777765422 1 2456788888889988653 44443
No 434
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.17 Score=61.40 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=30.8
Q ss_pred CCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001309 556 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 597 (1103)
Q Consensus 556 ~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~ 597 (1103)
..-||+|||++. |. .+..+.|...|+..++.+++|++++
T Consensus 117 ~~kVvIIDE~h~-Lt--~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 117 KYKVYIIDEVHM-LT--KEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CeEEEEEEChHH-hH--HHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 445999999998 43 3345667888898899999998887
No 435
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.1 Score=61.32 Aligned_cols=97 Identities=22% Similarity=0.353 Sum_probs=68.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCcc------ccc--------cccccHHHHHHHHHHHHhcCCe
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI------TSK--------WFGEGEKYVKAVFSLASKIAPS 897 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el--g~~fi~v~~s~L------~s~--------~~G~~e~~i~~lF~~A~~~~Ps 897 (1103)
-|..-+||-|.||.|||+|.-.++..+ ..++.+++..+- ..+ ..--.|..+..+...+...+|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344569999999999999887777665 237888887651 111 1112456788889999999999
Q ss_pred EEEEccccccccCCC--CCchhHHHHHHHHhHHhh
Q 001309 898 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 898 ILfIDEID~L~~~r~--~~~~~~~l~~vl~~LL~~ 930 (1103)
+++||-|..++...- .++.-...+....+++..
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 999999999986542 244455566666666544
No 436
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.49 E-value=0.013 Score=63.33 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999776654
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.48 E-value=0.28 Score=56.67 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
++.-++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34668999999999999999998876 455555554
No 438
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.012 Score=60.89 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
|-|.||||||||++|+.||.++|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 439
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.47 E-value=0.02 Score=68.17 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=62.1
Q ss_pred ccCCccccccccccccccchhHHHHHHHhhhhhcccccccccc-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001309 295 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 373 (1103)
Q Consensus 295 i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~-~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 373 (1103)
+..+++|.-..|++ .+=-|+.|.+|..|+|-|.+.-...... .+.....+.|||.||+|| -+.+|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~Gt--GKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGS--GKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCC--CHHHHHHHHHHHhCCC
Confidence 34444444444442 1224889999999999888875332111 134445678999999999 6999999999999999
Q ss_pred EEEEeccCCC
Q 001309 374 LLIVDSLLLP 383 (1103)
Q Consensus 374 LL~lDs~~~~ 383 (1103)
+..+|.+.+.
T Consensus 136 f~~id~~~l~ 145 (412)
T PRK05342 136 FAIADATTLT 145 (412)
T ss_pred ceecchhhcc
Confidence 9999987654
No 440
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.46 E-value=0.012 Score=57.11 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el 860 (1103)
|+|.|+||+|||++|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 441
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.43 E-value=0.029 Score=61.96 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 872 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L 872 (1103)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 566777765433
No 442
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.11 Score=61.25 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=43.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------cc---------ccccHHHHHHHHHHHHh-cC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW---------FGEGEKYVKAVFSLASK-IA 895 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s-------~~---------~G~~e~~i~~lF~~A~~-~~ 895 (1103)
++.++|.||+|+|||+++..||..+ +..+..+++..... .| .......+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999998776 44555555432210 00 01223334444444433 23
Q ss_pred CeEEEEcccccc
Q 001309 896 PSVVFVDEVDSM 907 (1103)
Q Consensus 896 PsILfIDEID~L 907 (1103)
..+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 578888877553
No 443
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.34 Score=56.93 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=63.3
Q ss_pred CeEEEEcccccccc----CCCCCch-hHHHHHHHHhHHhhhcCCcccCCccEEEEEec--CC--------------CCCC
Q 001309 896 PSVVFVDEVDSMLG----RRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NR--------------PFDL 954 (1103)
Q Consensus 896 PsILfIDEID~L~~----~r~~~~~-~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT--N~--------------p~~L 954 (1103)
|-++.||++..|+. .+..... .-....+...++..+.+-.. ...+++++. .. ...+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt---~g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWT---FGSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccc---cceEEEEecccccchhccccccccCCchHhc
Confidence 56888999999997 2222111 01112333444444444322 223333333 11 1233
Q ss_pred cHHHHh---ccccccccCCCCHHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 955 DEAVVR---RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 955 d~aLlr---RF~~~I~l~lPd~eeR~eIL~~ll~~~----~l~~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
++.... -| ..|+++..+.+|-..++.+++... ....+..++++--+. +.+++.++.+|.
T Consensus 393 g~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 393 GEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred CccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 333333 34 347778889999999999988763 233355566776666 446677777764
No 444
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.41 E-value=0.13 Score=55.72 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
.+..-++|.|+||+|||+++..++.+. +-+.+.++..
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345669999999999999999887553 6666666653
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.12 Score=56.15 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999973
No 446
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.40 E-value=0.052 Score=62.64 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCcccc------ccccccHHHHHHHHHHHHhcCCeEEEEccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 904 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~-~s~L~s------~~~G~~e~~i~~lF~~A~~~~PsILfIDEI 904 (1103)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999998876 22333332 112110 011111224667778888999999999999
No 447
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.34 E-value=0.062 Score=55.75 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 871 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~ 871 (1103)
+++.|+||+|||+++..++..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998776 66677777653
No 448
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.31 E-value=0.046 Score=58.37 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccccccc------------------cHHHHHHHHHHHHhcC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGE------------------GEKYVKAVFSLASKIA 895 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~~s~L~s~~~G~------------------~e~~i~~lF~~A~~~~ 895 (1103)
.|.-++|.|+||+|||+++..+...+ +..++.++..++....... .......++..|....
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~ 93 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENR 93 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34679999999999999999999988 7888899887765443221 1113444566666666
Q ss_pred CeEEE
Q 001309 896 PSVVF 900 (1103)
Q Consensus 896 PsILf 900 (1103)
..|||
T Consensus 94 ~nii~ 98 (199)
T PF06414_consen 94 YNIIF 98 (199)
T ss_dssp --EEE
T ss_pred CCEEE
Confidence 66665
No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.29 E-value=0.11 Score=55.44 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA 857 (1103)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999988
No 450
>PRK14527 adenylate kinase; Provisional
Probab=95.28 E-value=0.015 Score=61.49 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+.-++++||||+|||++|+.++.++++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998765543
No 451
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.27 E-value=0.034 Score=64.05 Aligned_cols=69 Identities=25% Similarity=0.414 Sum_probs=46.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-Cccc---cc---cccccHHHHHHHHHHHHhcCCeEEEEccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 904 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~-s~L~---s~---~~G~~e~~i~~lF~~A~~~~PsILfIDEI 904 (1103)
.++++.|++|+|||+++++++.+. ...++.+.- .++. .. +....+-....++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999764 122332221 1111 00 11112234677888888999999999999
Q ss_pred c
Q 001309 905 D 905 (1103)
Q Consensus 905 D 905 (1103)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 452
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.27 E-value=0.073 Score=55.86 Aligned_cols=74 Identities=26% Similarity=0.438 Sum_probs=42.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecCccc-----------ccc-------c--------
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------F-------- 877 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-------------g~~fi~v~~s~L~-----------s~~-------~-------- 877 (1103)
.-++|+||||+|||+++..++..+ +.++..++...-. ..+ +
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 458999999999999999887654 2356666653310 000 0
Q ss_pred ---------c-ccHHHHHHHHHHHHh-cCCeEEEEccccccccC
Q 001309 878 ---------G-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 878 ---------G-~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~ 910 (1103)
+ .....+..+...+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0 012234456666666 57899999999999765
No 453
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.26 E-value=0.05 Score=64.19 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
...++|.||+|+|||+|++.|++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35699999999999999999998763
No 454
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.26 E-value=0.027 Score=64.46 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc---cc----c-----cccHHHHHHHHHHHHhcCCeEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVV 899 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~-s~L~s---~~----~-----G~~e~~i~~lF~~A~~~~PsIL 899 (1103)
...+++|.||+|+|||+++++++..+.. ..+.+.- .++.- .. . +...-....++..+.+..|.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3468999999999999999999877632 2222221 11100 00 0 1112245667777888999999
Q ss_pred EEcccc
Q 001309 900 FVDEVD 905 (1103)
Q Consensus 900 fIDEID 905 (1103)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999994
No 455
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.23 E-value=0.02 Score=67.70 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=55.8
Q ss_pred ccchhHHHHHHHhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCC
Q 001309 311 YLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 383 (1103)
Q Consensus 311 ylse~tk~~L~~~~~~hL~~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~~ 383 (1103)
+--++.|.+|.-|.|.|.+...+.+-.+ ...+ +.|||.||+|+ -..+||||||+.++++++-+|.+.+.
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p--~~ILLiGppG~--GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP--KNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhccccccccccCC--ceEEEECCCCC--CHHHHHHHHHHHhCCeEEEeecceee
Confidence 3358999999999999977765532222 2333 78999999999 69999999999999999999988764
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.21 E-value=0.025 Score=65.83 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=46.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc------------ccccccHHHHHHHHHHHHhcCCeEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS------------KWFGEGEKYVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~-s~L~s------------~~~G~~e~~i~~lF~~A~~~~PsILf 900 (1103)
..++|+.||+|+|||+++++++..... .++.+.- .++.- ...+...-....++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 368999999999999999999987732 2332211 11100 00011122456788888899999999
Q ss_pred Ecccc
Q 001309 901 VDEVD 905 (1103)
Q Consensus 901 IDEID 905 (1103)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99993
No 457
>PRK04040 adenylate kinase; Provisional
Probab=95.20 E-value=0.02 Score=60.99 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA--GANFI 865 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el--g~~fi 865 (1103)
+.-++|+|+||+|||++++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3568999999999999999999999 55554
No 458
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.19 E-value=0.032 Score=60.07 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=57.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
.-++|.|+.|+|||++.+.|+.+. +.-+... ... .... ...... -|+.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~-----~~~-kd~~---~~l~~~---~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSIND-----FDD-KDFL---EQLQGK---WIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCcccc-----CCC-cHHH---HHHHHh---HheeHHHHhhcc-----hhh
Confidence 458999999999999999996652 1111100 011 1111 111111 588899999873 222
Q ss_pred hHHHHHHHHhHHhhhcCC----cccCCccEEEEEecCCCCCCc-HHHHhcc
Q 001309 917 HEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLD-EAVVRRL 962 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~ldgl----~~k~~~~VlVIaTTN~p~~Ld-~aLlrRF 962 (1103)
.+.+..++..-...++.. ...-+....+|||||..+-|. +.--|||
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf 162 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF 162 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE
Confidence 334443333322222211 112246678899999877554 4455677
No 459
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.18 E-value=0.017 Score=58.63 Aligned_cols=31 Identities=39% Similarity=0.667 Sum_probs=25.1
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 841 LFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 841 L~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
|.||||+|||++|+.||.++++.. +++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHH
Confidence 689999999999999999998654 4544543
No 460
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.084 Score=53.93 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-------c---c---ccccHHHHHHHHHHHHhcCCeEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 899 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~--fi~v~~s~L~s-------~---~---~G~~e~~i~~lF~~A~~~~PsIL 899 (1103)
+...+.|.||+|+|||+|+++|+...... -+.++...+.. . + ...++ .-+-.+..+--..|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 44579999999999999999998766321 12333221110 0 0 11122 22223444555578999
Q ss_pred EEccccc
Q 001309 900 FVDEVDS 906 (1103)
Q Consensus 900 fIDEID~ 906 (1103)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999964
No 461
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.15 E-value=0.04 Score=57.18 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc---cc----cHHHHHHHHHHHHhc--CCeEEEEccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF---GE----GEKYVKAVFSLASKI--APSVVFVDEV 904 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~---G~----~e~~i~~lF~~A~~~--~PsILfIDEI 904 (1103)
.-|+|+|.||+|||+||+++.+.+ +.+++.++...+...+. +. -...++.+...|+.. +..++++.=+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~i 82 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAFI 82 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeec
Confidence 458999999999999999998877 88999999876554321 11 234566666666532 2245554433
No 462
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.15 E-value=0.058 Score=60.77 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=37.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--c-ccc-cccHHHHHHHHHHHHh---cCCeEEEEcccccc
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KWF-GEGEKYVKAVFSLASK---IAPSVVFVDEVDSM 907 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~--s-~~~-G~~e~~i~~lF~~A~~---~~PsILfIDEID~L 907 (1103)
=|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .|. ...|+.++..+..+-. ....||++|+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 38999999999999999998876 5677777643332 1 121 2235555543332211 23479999998765
No 463
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.14 E-value=0.4 Score=55.79 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=49.9
Q ss_pred HHhhhhCCCeEEEeCCch-hhHHHHHHHHHhhc--h---------hhhhcccchhHHHHHhhhCCCCccchhhhhhccCC
Q 001309 647 KQISRLFPNKVTIQLPQD-EALLSDWKQQLERD--V---------ETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT 714 (1103)
Q Consensus 647 ~~l~~lf~~~i~i~~P~D-eALlRRferq~e~~--L---------pd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg 714 (1103)
+++..+|.-.|.+..|.+ +....-..+...++ . .....+.+|...+..+..-.+++..++.++.....
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 678889999999998877 33222222211111 1 12233467777776666666666655554433321
Q ss_pred ----CCHHHHHHHHhhhhhhcccc
Q 001309 715 ----LTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 715 ----~sgadI~~Lv~~A~s~al~r 734 (1103)
=.-++|. +++.|+.+|+..
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHc
Confidence 1235555 788888887763
No 464
>PLN02674 adenylate kinase
Probab=95.13 E-value=0.02 Score=63.44 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+...++|.||||+||+++|+.||+.++++.+..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 346799999999999999999999998766544
No 465
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.10 E-value=0.17 Score=53.57 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001309 839 ILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA 857 (1103)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 466
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.29 Score=58.39 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 870 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s 870 (1103)
+.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 3458999999999999999998654 4445445443
No 467
>PRK04182 cytidylate kinase; Provisional
Probab=95.07 E-value=0.021 Score=59.05 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.|+|.|++|+|||++++.+|..++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988765
No 468
>PRK06696 uridine kinase; Validated
Probab=95.06 E-value=0.051 Score=59.11 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 873 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~ 873 (1103)
+.-|.|.|++|+||||||+.|+..+ |.+++.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3569999999999999999999998 6778777766543
No 469
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.06 E-value=0.052 Score=61.30 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=46.9
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc---------c-ccccccccHHHHHHHHHHHHhcCCeEEEE
Q 001309 837 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS---------I-TSKWFGEGEKYVKAVFSLASKIAPSVVFV 901 (1103)
Q Consensus 837 ~g-VLL~GPpGTGKT~LAkAIA~elg----~~fi~v~~s~---------L-~s~~~G~~e~~i~~lF~~A~~~~PsILfI 901 (1103)
+| ||++||+|+|||+...++-.+.+ .+.+.+--+- + ...-+|............|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 34 89999999999998888888774 3344443211 1 11123433444555667777888999999
Q ss_pred ccccc
Q 001309 902 DEVDS 906 (1103)
Q Consensus 902 DEID~ 906 (1103)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99953
No 470
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.02 E-value=0.12 Score=65.64 Aligned_cols=76 Identities=22% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcccc----------------ccccccHHHHHHHHHHHHhc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKI 894 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~e---lg~~fi~v~~s~L~s----------------~~~G~~e~~i~~lF~~A~~~ 894 (1103)
.+..-++|+||||+|||+|+..++.. .+-..+.++...-.. ......+..+..+-...+..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 34456899999999999999765433 366666666543111 01112233333333444555
Q ss_pred CCeEEEEcccccccc
Q 001309 895 APSVVFVDEVDSMLG 909 (1103)
Q Consensus 895 ~PsILfIDEID~L~~ 909 (1103)
.+.+|+||-|..|+.
T Consensus 138 ~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 138 ALDIVVIDSVAALVP 152 (790)
T ss_pred CCeEEEEcchhhhcc
Confidence 789999999999985
No 471
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.01 E-value=3.6 Score=49.12 Aligned_cols=205 Identities=23% Similarity=0.242 Sum_probs=115.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc---------------ccccccc-----cHHHHHHHHHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI---------------TSKWFGE-----GEKYVKAVFSL 890 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L---------------~s~~~G~-----~e~~i~~lF~~ 890 (1103)
+||.-||+.|=.|+||||.+..+|.++ +..+..+.|... .-.+++. +-...+.....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 466779999999999999999999888 555555554331 1112222 23456778888
Q ss_pred HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc--HHHHhcccc-ccc
Q 001309 891 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPR-RLM 967 (1103)
Q Consensus 891 A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~-~I~ 967 (1103)
|+...-.||++|=..++. .-..+++++...-+-+.+ .+-++|+=++.-.+..+ .+|-.+.+. -+.
T Consensus 178 ak~~~~DvvIvDTAGRl~----------ide~Lm~El~~Ik~~~~P--~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH----------IDEELMDELKEIKEVINP--DETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHcCCCEEEEeCCCccc----------ccHHHHHHHHHHHhhcCC--CeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 888888999999997761 112344454433333332 24455555544333222 344333322 234
Q ss_pred cCCCCHHHHHHH---HHHHHhh--------ccc--CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 968 VNLPDAPNREKI---IRVILAK--------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 968 l~lPd~eeR~eI---L~~ll~~--------~~l--~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
+.-.|-+.|--- +++.... +.+ .+.++.+.+|.+.=| -+|+..|++.|....-.+.. ++...
T Consensus 246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG--MGDv~sLvEk~~~~~d~e~a--~~~~~- 320 (451)
T COG0541 246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG--MGDVLSLIEKAEEVVDEEEA--EKLAE- 320 (451)
T ss_pred EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC--cccHHHHHHHHHHhhhHHHH--HHHHH-
Confidence 455555555321 1222221 111 245667888888744 36999999887643322110 11000
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1035 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1035 l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
... .-..+.+||.+-+++++.
T Consensus 321 -kl~-------------~g~FtL~Df~~Ql~~m~k 341 (451)
T COG0541 321 -KLK-------------KGKFTLEDFLEQLEQMKK 341 (451)
T ss_pred -HHH-------------hCCCCHHHHHHHHHHHHc
Confidence 111 123788999988887753
No 472
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.017 Score=60.41 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.++|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999888776
No 473
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.96 E-value=0.023 Score=58.29 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
-|.|+|++|+|||++|+.+++.++++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887654
No 474
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.95 E-value=0.025 Score=66.43 Aligned_cols=45 Identities=36% Similarity=0.647 Sum_probs=38.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..+++|..-.++.++.|.+. ..|+|+.||||.|||++|+|+|..+
T Consensus 243 k~~ledY~L~dkl~eRL~er-------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER-------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhh-------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 34678888888988888772 2589999999999999999999877
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.94 E-value=0.19 Score=54.50 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
..+...++|.||||+|||+|+..++.+. +-+.+.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3445679999999999999999876543 445555553
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.93 E-value=0.13 Score=62.53 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc--------------ccc--------------cccHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KWF--------------GEGEK 882 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s--------------~~~--------------G~~e~ 882 (1103)
.+...+||.||||+|||+|+..++... |-+.+.+...+-.. .+. ...+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 444669999999999999999887755 55555555433100 000 01255
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccc
Q 001309 883 YVKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 883 ~i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
.+..+.+......|.+|+||-+..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 67777788888899999999998774
No 477
>PRK01184 hypothetical protein; Provisional
Probab=94.93 E-value=0.022 Score=59.64 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 788899887655
No 478
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.93 E-value=0.031 Score=65.08 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 479
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.88 E-value=0.11 Score=59.56 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 871 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~ 871 (1103)
...-++|+||||+|||.++..+|... +..++.++...
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 34558999999999999999998653 23677777644
No 480
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.88 E-value=0.097 Score=66.67 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecCc----cccccccccHHHHHHHHHHHH----------hcCCeE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLAS----------KIAPSV 898 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el---g--~~fi~v~~s~----L~s~~~G~~e~~i~~lF~~A~----------~~~PsI 898 (1103)
-++|.|+||||||++++++...+ + .+++-+.... -+....|.....+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986655 3 3444333221 111112222233444433210 123579
Q ss_pred EEEcccccc
Q 001309 899 VFVDEVDSM 907 (1103)
Q Consensus 899 LfIDEID~L 907 (1103)
|+|||+..+
T Consensus 420 lIvDEaSMv 428 (720)
T TIGR01448 420 LIVDESSMM 428 (720)
T ss_pred EEEeccccC
Confidence 999999766
No 481
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.85 E-value=0.13 Score=58.69 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 871 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~ 871 (1103)
..-++|+||||+|||+++..+|... +...++++...
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3557999999999999999997663 23677777654
No 482
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.83 E-value=0.045 Score=65.14 Aligned_cols=84 Identities=30% Similarity=0.426 Sum_probs=60.1
Q ss_pred cCCccccccccccccccchhHHHHHHHhhhhhccccccc--ccc-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 001309 296 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA--KYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 372 (1103)
Q Consensus 296 ~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~--k~~-~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a 372 (1103)
..+++|.-.++++ .+--|+.|.+|.-|.|-|.+.-... ... .+..-....|||.||+|| -..+|||+||+.+++
T Consensus 66 ~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~Gs--GKT~lAraLA~~l~~ 142 (413)
T TIGR00382 66 PTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGS--GKTLLAQTLARILNV 142 (413)
T ss_pred CCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCc--CHHHHHHHHHHhcCC
Confidence 3344444444442 2335899999999999998884331 110 122334578999999999 699999999999999
Q ss_pred eEEEEeccCC
Q 001309 373 RLLIVDSLLL 382 (1103)
Q Consensus 373 ~LL~lDs~~~ 382 (1103)
++.++|.+.+
T Consensus 143 pf~~~da~~L 152 (413)
T TIGR00382 143 PFAIADATTL 152 (413)
T ss_pred CeEEechhhc
Confidence 9999997665
No 483
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.77 E-value=0.027 Score=57.91 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
|.|+|+||||||+|+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 88776
No 484
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.76 E-value=0.24 Score=58.83 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=35.1
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001309 301 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 370 (1103)
Q Consensus 301 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 370 (1103)
-.-|||+|= ..+..+.+...|.- ++ .+-......++|+||+|| ....|++|+|++.
T Consensus 105 ~~~tfd~fi--~g~~n~~a~~~~~~-------~~---~~~~~~~n~l~l~G~~G~--GKThL~~ai~~~l 160 (405)
T TIGR00362 105 PKYTFDNFV--VGKSNRLAHAAALA-------VA---ENPGKAYNPLFIYGGVGL--GKTHLLHAIGNEI 160 (405)
T ss_pred CCCcccccc--cCCcHHHHHHHHHH-------HH---hCcCccCCeEEEECCCCC--cHHHHHHHHHHHH
Confidence 356899974 34444443332222 11 111122345899999999 7999999999986
No 485
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.70 E-value=0.03 Score=63.26 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v 867 (1103)
.-+++.|+||||||++|+.+++++ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 358899999999999999999998 5554443
No 486
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.70 E-value=0.033 Score=60.31 Aligned_cols=37 Identities=41% Similarity=0.551 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
-++|+||+|||||.+|-++|+..|.|++..|.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 4799999999999999999999999999999655443
No 487
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.70 E-value=0.035 Score=49.34 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el 860 (1103)
+.|.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 488
>PF13245 AAA_19: Part of AAA domain
Probab=94.64 E-value=0.052 Score=49.51 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=17.1
Q ss_pred eEEEEcCCCChHHH-HHHHHHHHh
Q 001309 838 GILLFGPPGTGKTM-LAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~-LAkAIA~el 860 (1103)
-+++.||||||||+ +++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 46679999999995 555565555
No 489
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.63 E-value=0.11 Score=53.94 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 871 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~ 871 (1103)
+.-+.|.|+||+|||++|++++..+ +..+..++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 3568999999999999999999887 44566666544
No 490
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.63 E-value=0.026 Score=60.08 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+|.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766555
No 491
>PRK14526 adenylate kinase; Provisional
Probab=94.62 E-value=0.032 Score=60.58 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.++|.||||+|||++++.+|..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876654
No 492
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.60 E-value=0.17 Score=57.34 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 871 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el----g-~~fi~v~~s~ 871 (1103)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4579999999999999999998765 3 5666666544
No 493
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.55 E-value=1.3 Score=52.78 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-cC-----------------CcccHHHHHHHcC--CCcHHHHH
Q 001309 952 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LA-----------------SDVDLEGIANMAD--GYSGSDLK 1011 (1103)
Q Consensus 952 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~-l~-----------------~dvdl~~LA~~Te--GySg~DL~ 1011 (1103)
..|..++=.|--+.|.+.-.+.+.-..++...+.... .. ...+..++....+ |---.||.
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe 276 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLE 276 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHH
Confidence 3455555555447788888888888888888776531 10 0123344443333 33346888
Q ss_pred HHHHHHH-----hhhhHHHHHHH
Q 001309 1012 NLCVTAA-----HCPIREILEKE 1029 (1103)
Q Consensus 1012 ~L~~~Aa-----~~aireiie~~ 1029 (1103)
.++++.. ..|+.+++++.
T Consensus 277 ~lvrRiksGe~p~~Av~~iI~qs 299 (431)
T PF10443_consen 277 FLVRRIKSGESPEEAVEEIISQS 299 (431)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 8887653 45556655544
No 494
>PRK10263 DNA translocase FtsK; Provisional
Probab=94.55 E-value=0.19 Score=66.33 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=48.1
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC--CCcHHHHhccccccccCCCCHH
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
-||+|||+..|+.... . .....+..+... . ....|-+|.+|.+|. .+...++.-|..+|.|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~----k-evE~lI~rLAqk----G--RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG----K-KVEELIARLAQK----A--RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh----H-HHHHHHHHHHHH----h--hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 4899999988753211 1 111222222211 1 125688888888875 5666677788888999998888
Q ss_pred HHHHHHHH
Q 001309 975 NREKIIRV 982 (1103)
Q Consensus 975 eR~eIL~~ 982 (1103)
+-..||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 88877754
No 495
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.54 E-value=0.11 Score=60.42 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=45.0
Q ss_pred Ccc-cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001309 799 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 868 (1103)
Q Consensus 799 sfd-dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~ 868 (1103)
.|+ ++.|+++.++++.+++...-+ +.....+-++|.||+|+|||+|++.+.+.+ ..+++.+.
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~--------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQ--------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHh--------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 355 699999999999987764211 222233468999999999999999998877 34555553
No 496
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.52 E-value=0.057 Score=62.40 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
..+.|.|++|+|||+|+++++..++.+++.-...+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~ 197 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE 197 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH
Confidence 47999999999999999999999998886555443
No 497
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.52 E-value=0.22 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.+..-+.|.||+|+|||+|.++++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34456899999999999999999643
No 498
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.51 E-value=0.091 Score=56.89 Aligned_cols=23 Identities=52% Similarity=0.696 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
-+.+.||+|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998665
No 499
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.47 E-value=0.065 Score=63.65 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
+.|.|.|++|||||+|+++||..+|..++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999887654
No 500
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.47 E-value=0.099 Score=61.29 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
...||+||||+|||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998877
Done!