Query 001309
Match_columns 1103
No_of_seqs 632 out of 3618
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 21:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.7E-64 5.9E-69 624.8 12.4 546 301-1089 199-763 (806)
2 4b4t_J 26S protease regulatory 100.0 3.2E-41 1.1E-45 388.2 26.0 247 796-1071 143-393 (405)
3 1ypw_A Transitional endoplasmi 100.0 1.4E-43 4.8E-48 443.2 5.1 545 302-1089 200-763 (806)
4 4b4t_H 26S protease regulatory 100.0 5.4E-40 1.9E-44 382.3 25.9 260 796-1085 204-467 (467)
5 4b4t_I 26S protease regulatory 100.0 2.5E-40 8.4E-45 382.0 22.3 251 795-1074 176-430 (437)
6 4b4t_M 26S protease regulatory 100.0 6.6E-40 2.2E-44 381.9 24.2 250 795-1073 175-428 (434)
7 4b4t_L 26S protease subunit RP 100.0 1.1E-39 3.9E-44 380.2 23.6 249 795-1072 175-427 (437)
8 4b4t_K 26S protease regulatory 100.0 2.9E-38 9.8E-43 367.8 25.6 246 796-1070 167-418 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.2E-38 4E-43 394.6 12.0 287 796-1095 199-487 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 4.3E-35 1.5E-39 330.2 29.7 291 796-1092 7-322 (322)
11 3eie_A Vacuolar protein sortin 100.0 1.4E-34 4.9E-39 325.2 24.8 292 796-1093 13-322 (322)
12 2qp9_X Vacuolar protein sortin 100.0 4.9E-34 1.7E-38 325.8 24.3 294 794-1093 44-355 (355)
13 2zan_A Vacuolar protein sortin 100.0 4.2E-33 1.4E-37 327.2 23.4 293 794-1092 127-444 (444)
14 3cf0_A Transitional endoplasmi 100.0 2.2E-33 7.4E-38 312.9 18.7 286 797-1088 11-300 (301)
15 3hu3_A Transitional endoplasmi 100.0 9.1E-33 3.1E-37 327.8 19.2 281 797-1091 200-483 (489)
16 3d8b_A Fidgetin-like protein 1 100.0 7.4E-32 2.5E-36 307.7 25.1 276 797-1091 80-356 (357)
17 2x8a_A Nuclear valosin-contain 100.0 8.5E-32 2.9E-36 297.1 20.3 259 797-1074 6-271 (274)
18 3b9p_A CG5977-PA, isoform A; A 100.0 7E-31 2.4E-35 289.9 21.3 278 795-1091 15-294 (297)
19 3vfd_A Spastin; ATPase, microt 100.0 4.2E-30 1.4E-34 296.0 24.2 277 796-1091 110-387 (389)
20 3h4m_A Proteasome-activating n 100.0 2.1E-29 7E-34 276.3 24.6 267 797-1092 13-283 (285)
21 2ce7_A Cell division protein F 100.0 4.8E-29 1.6E-33 294.4 25.6 265 795-1089 10-282 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 2.2E-28 7.4E-33 265.1 24.2 245 795-1069 6-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.5E-28 8.6E-33 263.4 18.2 247 797-1073 2-255 (262)
24 2dhr_A FTSH; AAA+ protein, hex 99.9 2.5E-27 8.6E-32 281.2 20.3 264 796-1089 26-297 (499)
25 1ixz_A ATP-dependent metallopr 99.9 6.7E-26 2.3E-30 245.1 21.8 240 795-1064 10-253 (254)
26 2r62_A Cell division protease 99.9 1.9E-28 6.4E-33 266.6 1.7 252 794-1074 4-260 (268)
27 1iy2_A ATP-dependent metallopr 99.9 1.6E-24 5.6E-29 238.0 24.8 239 796-1064 35-277 (278)
28 1ypw_A Transitional endoplasmi 99.9 3.6E-26 1.2E-30 286.2 13.1 286 797-1095 200-487 (806)
29 4b4t_J 26S protease regulatory 99.9 8.7E-24 3E-28 243.5 13.6 234 299-767 141-390 (405)
30 4b4t_I 26S protease regulatory 99.9 1.2E-23 4.1E-28 243.2 11.8 234 299-767 175-424 (437)
31 4b4t_M 26S protease regulatory 99.9 3.9E-23 1.3E-27 240.9 10.5 236 298-768 173-424 (434)
32 4b4t_L 26S protease subunit RP 99.9 9.1E-23 3.1E-27 238.1 12.0 235 299-768 174-424 (437)
33 4b4t_H 26S protease regulatory 99.9 2.6E-22 8.8E-27 234.1 14.4 233 299-767 202-451 (467)
34 3pxi_A Negative regulator of g 99.9 5.6E-22 1.9E-26 247.0 17.4 210 801-1024 491-727 (758)
35 1r6b_X CLPA protein; AAA+, N-t 99.9 2.7E-21 9.3E-26 240.6 23.3 203 802-1024 459-718 (758)
36 4b4t_K 26S protease regulatory 99.9 8.9E-22 3E-26 229.3 13.0 216 299-734 165-397 (428)
37 3t15_A Ribulose bisphosphate c 99.8 3.7E-21 1.3E-25 213.8 15.4 175 833-1013 33-223 (293)
38 1qvr_A CLPB protein; coiled co 99.8 2.3E-19 7.9E-24 226.3 22.1 208 801-1025 558-823 (854)
39 3syl_A Protein CBBX; photosynt 99.8 2.3E-18 8E-23 190.4 18.4 215 802-1027 32-268 (309)
40 2c9o_A RUVB-like 1; hexameric 99.8 1.6E-20 5.6E-25 220.9 -2.5 202 796-1016 32-262 (456)
41 1ofh_A ATP-dependent HSL prote 99.7 1.2E-17 4.1E-22 183.8 15.3 247 802-1068 16-300 (310)
42 3uk6_A RUVB-like 2; hexameric 99.7 7.6E-17 2.6E-21 182.6 21.2 219 797-1067 40-330 (368)
43 3pfi_A Holliday junction ATP-d 99.7 2.7E-16 9.2E-21 176.5 22.3 199 798-1020 26-233 (338)
44 1xwi_A SKD1 protein; VPS4B, AA 99.7 4.6E-17 1.6E-21 183.3 15.1 218 299-735 5-234 (322)
45 1d2n_A N-ethylmaleimide-sensit 99.7 8.5E-17 2.9E-21 175.6 15.3 177 834-1020 62-248 (272)
46 2qp9_X Vacuolar protein sortin 99.7 1.8E-16 6.1E-21 180.8 12.4 229 287-735 33-272 (355)
47 3eie_A Vacuolar protein sortin 99.7 1.7E-16 5.9E-21 178.1 11.8 219 299-736 11-240 (322)
48 1hqc_A RUVB; extended AAA-ATPa 99.7 1.1E-15 3.7E-20 169.9 17.6 202 798-1021 9-218 (324)
49 3hws_A ATP-dependent CLP prote 99.6 2.9E-16 9.9E-21 178.9 11.8 222 802-1023 16-324 (363)
50 3m6a_A ATP-dependent protease 99.6 5.1E-16 1.7E-20 186.7 14.3 230 800-1067 80-341 (543)
51 2chg_A Replication factor C sm 99.6 2.8E-14 9.7E-19 147.3 21.9 183 798-1018 14-208 (226)
52 2v1u_A Cell division control p 99.6 2.6E-14 9E-19 161.3 23.3 202 800-1021 18-256 (387)
53 3pvs_A Replication-associated 99.6 1.5E-14 5.1E-19 170.1 20.6 182 798-1020 23-221 (447)
54 2z4s_A Chromosomal replication 99.6 2E-14 6.7E-19 168.7 20.7 199 797-1021 101-313 (440)
55 4fcw_A Chaperone protein CLPB; 99.6 1E-14 3.6E-19 161.0 17.0 215 802-1026 18-283 (311)
56 3bos_A Putative DNA replicatio 99.6 6.3E-14 2.1E-18 147.6 21.9 205 797-1065 24-241 (242)
57 1njg_A DNA polymerase III subu 99.6 4.3E-14 1.5E-18 147.4 20.4 184 798-1018 20-232 (250)
58 1jbk_A CLPB protein; beta barr 99.6 1.8E-15 6.1E-20 152.8 9.5 158 798-980 19-194 (195)
59 1g41_A Heat shock protein HSLU 99.6 2.6E-14 8.8E-19 167.2 20.5 180 802-981 16-346 (444)
60 2zan_A Vacuolar protein sortin 99.6 1.1E-15 3.8E-20 179.4 8.8 229 287-735 116-356 (444)
61 1r6b_X CLPA protein; AAA+, N-t 99.6 1.1E-14 3.6E-19 181.5 17.3 197 798-1018 183-406 (758)
62 2x8a_A Nuclear valosin-contain 99.6 3.1E-15 1.1E-19 164.8 10.9 100 665-768 161-266 (274)
63 1g8p_A Magnesium-chelatase 38 99.6 2.5E-14 8.4E-19 160.5 17.8 167 797-984 20-232 (350)
64 3u61_B DNA polymerase accessor 99.6 2.8E-14 9.6E-19 159.3 17.9 184 798-1018 23-220 (324)
65 1l8q_A Chromosomal replication 99.6 9.2E-14 3.2E-18 155.4 22.2 196 797-1020 7-214 (324)
66 2r44_A Uncharacterized protein 99.6 1.1E-14 3.8E-19 163.2 14.7 164 800-986 26-200 (331)
67 2qby_B CDC6 homolog 3, cell di 99.6 6.4E-14 2.2E-18 158.9 20.6 193 801-1020 20-251 (384)
68 3pxg_A Negative regulator of g 99.5 1.6E-14 5.5E-19 170.6 14.0 182 798-1019 177-383 (468)
69 3b9p_A CG5977-PA, isoform A; A 99.5 9.2E-14 3.2E-18 153.0 16.8 258 288-768 4-274 (297)
70 3hu3_A Transitional endoplasmi 99.5 1.5E-14 5.2E-19 171.7 10.7 270 302-809 200-485 (489)
71 1um8_A ATP-dependent CLP prote 99.5 6.2E-14 2.1E-18 160.3 15.4 222 802-1023 22-341 (376)
72 2p65_A Hypothetical protein PF 99.5 2.3E-14 7.9E-19 144.7 10.4 150 798-972 19-187 (187)
73 3cf0_A Transitional endoplasmi 99.5 4.1E-15 1.4E-19 165.5 4.5 216 300-736 9-241 (301)
74 1fnn_A CDC6P, cell division co 99.5 1E-12 3.5E-17 148.8 23.7 199 800-1021 16-254 (389)
75 2qby_A CDC6 homolog 1, cell di 99.5 5.2E-13 1.8E-17 150.5 21.1 201 799-1021 18-252 (386)
76 1sxj_D Activator 1 41 kDa subu 99.5 3.5E-13 1.2E-17 151.1 19.3 185 797-1019 33-240 (353)
77 2c9o_A RUVB-like 1; hexameric 99.5 4.5E-14 1.6E-18 166.1 12.1 127 897-1067 297-437 (456)
78 3te6_A Regulatory protein SIR3 99.5 5.2E-13 1.8E-17 150.2 19.7 160 803-987 22-214 (318)
79 1sxj_A Activator 1 95 kDa subu 99.5 1E-13 3.4E-18 165.7 14.6 205 797-1017 35-255 (516)
80 1qvr_A CLPB protein; coiled co 99.5 7.7E-14 2.6E-18 176.1 14.2 197 798-1019 167-390 (854)
81 3d8b_A Fidgetin-like protein 1 99.5 2.8E-13 9.5E-18 154.5 16.0 255 291-768 70-336 (357)
82 2chq_A Replication factor C sm 99.5 6.6E-13 2.3E-17 146.3 17.2 188 797-1018 13-208 (319)
83 1in4_A RUVB, holliday junction 99.5 2.9E-12 1E-16 144.6 22.4 201 798-1021 22-230 (334)
84 3pxi_A Negative regulator of g 99.5 1.3E-13 4.4E-18 171.8 12.3 182 798-1019 177-383 (758)
85 1sxj_B Activator 1 37 kDa subu 99.5 1.2E-12 4E-17 144.6 18.5 182 798-1017 18-212 (323)
86 1iqp_A RFCS; clamp loader, ext 99.4 1.7E-12 5.7E-17 143.6 19.0 189 797-1019 21-217 (327)
87 2bjv_A PSP operon transcriptio 99.4 3.8E-13 1.3E-17 146.1 13.3 201 798-1019 3-238 (265)
88 1jr3_A DNA polymerase III subu 99.4 2E-12 6.9E-17 146.0 19.3 184 798-1018 13-225 (373)
89 2ce7_A Cell division protein F 99.4 4.5E-13 1.5E-17 158.4 12.8 125 544-734 99-239 (476)
90 3vfd_A Spastin; ATPase, microt 99.4 6.9E-13 2.4E-17 152.6 13.3 88 288-383 98-185 (389)
91 1ojl_A Transcriptional regulat 99.4 3.7E-13 1.3E-17 150.4 10.6 199 802-1021 3-235 (304)
92 1sxj_E Activator 1 40 kDa subu 99.4 5.2E-12 1.8E-16 142.1 15.9 187 797-1018 10-241 (354)
93 1lv7_A FTSH; alpha/beta domain 99.3 4.6E-12 1.6E-16 136.8 13.7 75 297-379 3-78 (257)
94 3h4m_A Proteasome-activating n 99.3 2.5E-12 8.6E-17 140.5 11.2 75 300-381 11-86 (285)
95 3f9v_A Minichromosome maintena 99.3 2.7E-13 9.4E-18 164.6 3.8 173 802-986 296-492 (595)
96 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 3E-12 1E-16 152.3 9.6 161 802-984 23-196 (500)
97 1sxj_C Activator 1 40 kDa subu 99.3 9.6E-11 3.3E-15 132.1 20.1 174 797-1007 21-206 (340)
98 2dhr_A FTSH; AAA+ protein, hex 99.3 6E-12 2.1E-16 149.6 10.1 66 666-733 185-253 (499)
99 2qz4_A Paraplegin; AAA+, SPG7, 99.3 1.4E-11 4.9E-16 132.3 11.7 72 302-381 2-74 (262)
100 3n70_A Transport activator; si 99.2 6.8E-12 2.3E-16 124.7 7.5 132 802-972 2-143 (145)
101 3co5_A Putative two-component 99.2 3.5E-12 1.2E-16 126.6 4.2 132 802-972 5-141 (143)
102 1a5t_A Delta prime, HOLB; zinc 99.2 3.1E-10 1.1E-14 128.1 19.3 167 806-1009 7-201 (334)
103 2r62_A Cell division protease 99.2 8.2E-12 2.8E-16 135.4 5.6 74 296-377 1-75 (268)
104 3k1j_A LON protease, ATP-depen 99.1 2E-10 6.9E-15 139.7 14.1 223 797-1066 37-374 (604)
105 1w5s_A Origin recognition comp 99.1 1.6E-09 5.3E-14 123.8 18.8 205 801-1021 22-273 (412)
106 1ixz_A ATP-dependent metallopr 99.1 1E-10 3.5E-15 126.1 8.0 67 666-734 170-239 (254)
107 2gno_A DNA polymerase III, gam 99.1 1.6E-09 5.5E-14 121.2 17.1 142 805-984 1-152 (305)
108 1iy2_A ATP-dependent metallopr 99.0 9.4E-10 3.2E-14 120.5 10.6 66 666-733 194-262 (278)
109 3cmw_A Protein RECA, recombina 99.0 5.4E-10 1.9E-14 147.6 10.2 153 795-950 1014-1217(1706)
110 3vlf_B 26S protease regulatory 99.0 1.3E-09 4.5E-14 100.1 8.4 87 972-1085 2-88 (88)
111 3t15_A Ribulose bisphosphate c 98.9 8.7E-10 3E-14 122.3 7.7 99 555-721 98-221 (293)
112 2krk_A 26S protease regulatory 98.9 1.1E-09 3.8E-14 100.4 6.8 78 967-1070 7-84 (86)
113 1ny5_A Transcriptional regulat 98.9 2.9E-09 1E-13 122.8 12.0 164 802-986 138-327 (387)
114 3kw6_A 26S protease regulatory 98.9 2E-09 6.8E-14 96.4 8.2 75 969-1069 1-75 (78)
115 3aji_B S6C, proteasome (prosom 98.8 7.3E-09 2.5E-13 93.8 7.1 75 972-1072 2-76 (83)
116 3dzd_A Transcriptional regulat 98.8 1.8E-08 6.1E-13 115.6 10.7 164 802-986 130-318 (368)
117 4akg_A Glutathione S-transfera 98.7 2.8E-08 9.5E-13 136.7 13.9 140 836-986 1267-1433(2695)
118 3ec2_A DNA replication protein 98.6 4.7E-08 1.6E-12 99.7 8.4 98 797-907 6-112 (180)
119 2kjq_A DNAA-related protein; s 98.6 1.5E-07 5.1E-12 94.3 11.7 107 835-969 35-146 (149)
120 3f8t_A Predicted ATPase involv 98.6 4.6E-08 1.6E-12 114.6 8.4 153 803-975 215-385 (506)
121 1gxc_A CHK2, CDS1, serine/thre 98.6 1.7E-07 5.8E-12 94.3 10.1 90 2-92 46-145 (149)
122 2fna_A Conserved hypothetical 98.6 1.2E-06 4.1E-11 97.3 17.9 185 799-1016 11-252 (357)
123 2w58_A DNAI, primosome compone 98.5 1.5E-07 5.1E-12 97.5 9.1 69 837-907 55-127 (202)
124 1lgp_A Cell cycle checkpoint p 98.5 1.4E-07 4.7E-12 90.8 6.5 86 3-91 23-114 (116)
125 2qen_A Walker-type ATPase; unk 98.5 2.7E-06 9.4E-11 94.3 17.1 188 799-1015 10-247 (350)
126 2krk_A 26S protease regulatory 98.4 9.8E-08 3.4E-12 87.4 3.1 75 678-768 9-83 (86)
127 2dzn_B 26S protease regulatory 98.4 7.3E-08 2.5E-12 87.2 2.1 69 974-1068 1-69 (82)
128 4h87_A Kanadaptin; FHA domain 98.4 7.7E-07 2.6E-11 87.6 9.5 82 3-86 40-129 (130)
129 2vhj_A Ntpase P4, P4; non- hyd 98.3 4.2E-07 1.4E-11 102.2 5.1 112 836-956 123-240 (331)
130 2r2a_A Uncharacterized protein 98.3 8.6E-07 2.9E-11 93.3 7.1 128 837-974 6-156 (199)
131 3kw6_A 26S protease regulatory 98.3 3.4E-07 1.2E-11 81.8 3.2 72 678-766 1-73 (78)
132 4akg_A Glutathione S-transfera 98.3 3.4E-06 1.1E-10 116.5 14.3 132 837-981 646-790 (2695)
133 2jqj_A DNA damage response pro 98.2 4.3E-06 1.5E-10 84.2 10.9 84 4-92 38-126 (151)
134 2qgz_A Helicase loader, putati 98.2 1.4E-06 4.7E-11 97.5 6.5 70 836-907 152-226 (308)
135 3vlf_B 26S protease regulatory 98.1 1.3E-06 4.4E-11 80.2 4.0 70 681-767 2-72 (88)
136 4ejq_A Kinesin-like protein KI 98.1 7.5E-06 2.6E-10 82.8 9.9 81 3-87 60-143 (154)
137 3syl_A Protein CBBX; photosynt 98.1 7.5E-06 2.6E-10 90.0 10.5 125 556-736 130-267 (309)
138 3aji_B S6C, proteasome (prosom 98.1 2.3E-06 7.9E-11 77.3 4.5 71 681-768 2-73 (83)
139 3po8_A RV0020C protein, putati 98.0 1.1E-05 3.8E-10 75.4 8.3 74 3-86 22-95 (100)
140 1g3g_A Protien kinase SPK1; FH 98.0 9.6E-06 3.3E-10 82.8 8.5 80 4-87 64-147 (164)
141 1uht_A Expressed protein; FHA 98.0 9.8E-06 3.4E-10 78.1 8.0 78 4-88 33-111 (118)
142 2pie_A E3 ubiquitin-protein li 98.0 1.8E-05 6.1E-10 78.5 9.4 82 3-87 27-116 (138)
143 3hx1_A SLR1951 protein; P74513 98.0 1.5E-05 5E-10 78.6 8.6 80 3-88 29-114 (131)
144 1tue_A Replication protein E1; 98.0 1.5E-05 5.2E-10 84.3 9.2 29 837-865 59-87 (212)
145 2xt9_B Putative signal transdu 98.0 2E-05 6.9E-10 75.6 9.1 77 3-89 30-106 (115)
146 1r21_A Antigen KI-67; beta san 98.0 1.1E-05 3.9E-10 78.8 7.4 78 2-88 31-108 (128)
147 3els_A PRE-mRNA leakage protei 98.0 1.6E-05 5.4E-10 80.8 8.7 84 3-86 55-156 (158)
148 1g6g_A Protein kinase RAD53; b 97.9 2.3E-05 7.8E-10 76.6 9.2 80 4-87 36-119 (127)
149 2kb3_A Oxoglutarate dehydrogen 97.9 1.4E-05 4.9E-10 79.8 7.8 76 3-88 65-140 (143)
150 1g41_A Heat shock protein HSLU 97.9 5.4E-06 1.9E-10 97.1 4.3 68 314-384 21-88 (444)
151 2csw_A Ubiquitin ligase protei 97.9 1.9E-05 6.5E-10 79.0 7.4 73 3-78 35-111 (145)
152 2jpe_A Nuclear inhibitor of pr 97.9 1.3E-05 4.3E-10 79.8 5.8 80 4-86 55-135 (140)
153 1wln_A Afadin; beta sandwich, 97.9 3.8E-05 1.3E-09 74.3 9.0 77 3-87 35-113 (120)
154 2kfu_A RV1827 PThr 22; FHA dom 97.8 5.4E-05 1.8E-09 77.2 10.0 76 3-88 74-149 (162)
155 1mzk_A Kinase associated prote 97.8 3E-05 1E-09 77.0 7.9 80 4-88 32-119 (139)
156 1dmz_A Protein (protein kinase 97.8 3E-05 1E-09 78.7 8.1 80 5-86 28-121 (158)
157 3vkg_A Dynein heavy chain, cyt 97.8 3.7E-05 1.3E-09 107.1 11.2 139 837-986 1305-1471(3245)
158 3fm8_A Kinesin-like protein KI 97.8 5.3E-05 1.8E-09 74.0 9.1 68 5-78 49-116 (124)
159 3va4_A Mediator of DNA damage 97.8 3.1E-05 1E-09 76.4 7.3 80 3-87 44-125 (132)
160 1d2n_A N-ethylmaleimide-sensit 97.8 3.3E-05 1.1E-09 83.9 8.2 36 342-379 62-97 (272)
161 3gqs_A Adenylate cyclase-like 97.8 4.4E-05 1.5E-09 72.2 7.9 75 4-86 25-100 (106)
162 3uk6_A RUVB-like 2; hexameric 97.8 6.7E-05 2.3E-09 84.5 10.5 140 540-733 171-312 (368)
163 3elv_A PRE-mRNA leakage protei 97.8 5.5E-05 1.9E-09 79.6 8.9 77 3-79 102-193 (205)
164 3vkg_A Dynein heavy chain, cyt 97.8 0.00012 4.1E-09 102.2 14.6 131 837-980 605-749 (3245)
165 3cmu_A Protein RECA, recombina 97.7 4.8E-05 1.6E-09 102.4 10.0 78 833-910 1424-1520(2050)
166 3oun_A Putative uncharacterize 97.6 8.5E-05 2.9E-09 75.3 8.0 68 3-77 84-151 (157)
167 2dzn_B 26S protease regulatory 97.6 2.3E-05 7.9E-10 70.7 3.5 67 683-766 1-68 (82)
168 1u0j_A DNA replication protein 97.6 7.6E-05 2.6E-09 81.9 8.2 27 836-862 104-130 (267)
169 1qu5_A Protein kinase SPK1; FH 97.6 4.1E-05 1.4E-09 79.5 5.0 80 5-86 52-145 (182)
170 1jr3_D DNA polymerase III, del 97.6 0.00061 2.1E-08 76.4 15.0 154 836-1015 18-186 (343)
171 4egx_A Kinesin-like protein KI 97.6 0.00023 8E-09 74.0 10.0 78 5-87 92-173 (184)
172 3m6a_A ATP-dependent protease 97.5 5.2E-05 1.8E-09 91.2 5.7 35 343-379 107-141 (543)
173 1ye8_A Protein THEP1, hypothet 97.5 0.0005 1.7E-08 70.7 11.4 28 838-865 2-29 (178)
174 3uv0_A Mutator 2, isoform B; F 97.5 0.00034 1.2E-08 65.2 8.6 62 3-72 20-81 (102)
175 3i6u_A CDS1, serine/threonine- 97.4 0.0002 6.8E-09 82.8 7.9 88 2-90 26-123 (419)
176 2ff4_A Probable regulatory pro 97.4 0.0004 1.4E-08 79.9 9.8 77 2-87 304-380 (388)
177 1ofh_A ATP-dependent HSL prote 97.3 0.00058 2E-08 74.5 9.1 68 313-383 20-87 (310)
178 1z6t_A APAF-1, apoptotic prote 97.2 0.0031 1.1E-07 75.7 15.1 172 801-1014 124-328 (591)
179 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0032 1.1E-07 65.3 12.7 74 835-908 22-136 (235)
180 1svm_A Large T antigen; AAA+ f 97.1 0.00024 8.1E-09 81.8 4.2 113 834-968 167-282 (377)
181 3pxg_A Negative regulator of g 97.1 9.4E-05 3.2E-09 87.3 0.8 43 544-598 258-300 (468)
182 3pfi_A Holliday junction ATP-d 97.1 0.0025 8.5E-08 71.0 12.0 62 304-379 27-88 (338)
183 1sxj_A Activator 1 95 kDa subu 97.0 0.0024 8.3E-08 76.1 11.6 77 304-384 37-115 (516)
184 2cvh_A DNA repair and recombin 97.0 0.0028 9.7E-08 65.5 10.7 38 834-871 18-55 (220)
185 3hr8_A Protein RECA; alpha and 97.0 0.0025 8.4E-08 72.8 10.9 76 834-909 59-153 (356)
186 2r8r_A Sensor protein; KDPD, P 96.9 0.011 3.9E-07 63.2 15.1 33 837-869 7-42 (228)
187 1xp8_A RECA protein, recombina 96.9 0.0026 8.8E-08 72.9 10.7 76 834-909 72-166 (366)
188 2zr9_A Protein RECA, recombina 96.9 0.0034 1.2E-07 71.4 11.4 76 834-909 59-153 (349)
189 1n0w_A DNA repair protein RAD5 96.9 0.0023 7.7E-08 67.3 9.2 77 834-910 22-134 (243)
190 1l8q_A Chromosomal replication 96.8 0.0039 1.3E-07 69.2 10.9 35 343-379 36-73 (324)
191 3sfz_A APAF-1, apoptotic pepti 96.8 0.015 5.2E-07 75.1 17.7 173 801-1013 124-327 (1249)
192 2r44_A Uncharacterized protein 96.8 0.027 9.3E-07 62.5 17.2 33 345-379 47-79 (331)
193 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0028 9.6E-08 69.8 8.4 33 344-378 38-70 (324)
194 3trf_A Shikimate kinase, SK; a 96.7 0.00084 2.9E-08 68.0 3.8 33 836-868 5-37 (185)
195 2orw_A Thymidine kinase; TMTK, 96.7 0.0023 7.9E-08 66.0 7.1 31 837-867 4-37 (184)
196 1jbk_A CLPB protein; beta barr 96.7 0.0099 3.4E-07 59.0 11.3 52 542-597 103-159 (195)
197 3u61_B DNA polymerase accessor 96.6 0.031 1.1E-06 61.7 16.3 58 304-379 24-81 (324)
198 1qhx_A CPT, protein (chloramph 96.6 0.0015 5.3E-08 65.5 5.2 35 837-871 4-38 (178)
199 2chg_A Replication factor C sm 96.6 0.017 5.7E-07 58.7 12.9 40 555-597 101-140 (226)
200 1u94_A RECA protein, recombina 96.6 0.0079 2.7E-07 68.6 11.4 76 834-909 61-155 (356)
201 2b8t_A Thymidine kinase; deoxy 96.6 0.011 3.7E-07 63.2 11.5 72 835-907 11-101 (223)
202 1v5w_A DMC1, meiotic recombina 96.5 0.0063 2.2E-07 68.8 9.9 77 834-910 120-234 (343)
203 3cmu_A Protein RECA, recombina 96.5 0.0038 1.3E-07 84.4 9.3 77 833-909 729-824 (2050)
204 2v1u_A Cell division control p 96.5 0.038 1.3E-06 61.7 16.1 132 542-732 118-257 (387)
205 2z43_A DNA repair and recombin 96.5 0.0043 1.5E-07 69.5 8.1 76 834-909 105-217 (324)
206 3vaa_A Shikimate kinase, SK; s 96.5 0.0015 5.2E-08 67.5 3.9 34 835-868 24-57 (199)
207 2dr3_A UPF0273 protein PH0284; 96.4 0.012 4.1E-07 61.8 10.6 36 834-869 21-59 (247)
208 2iut_A DNA translocase FTSK; n 96.4 0.029 1E-06 67.5 14.7 74 897-981 345-420 (574)
209 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.4E-08 63.7 4.2 31 838-868 3-33 (173)
210 3iij_A Coilin-interacting nucl 96.3 0.0023 7.8E-08 64.7 3.8 32 836-867 11-42 (180)
211 3upu_A ATP-dependent DNA helic 96.2 0.0071 2.4E-07 70.9 8.4 23 838-860 47-69 (459)
212 3io5_A Recombination and repai 96.2 0.011 3.7E-07 66.5 9.3 72 838-909 30-125 (333)
213 2iyv_A Shikimate kinase, SK; t 96.2 0.0022 7.6E-08 64.9 3.5 31 838-868 4-34 (184)
214 1via_A Shikimate kinase; struc 96.2 0.0032 1.1E-07 63.4 4.5 30 838-867 6-35 (175)
215 2rhm_A Putative kinase; P-loop 96.2 0.0039 1.3E-07 63.2 5.1 32 836-867 5-36 (193)
216 4fcw_A Chaperone protein CLPB; 96.2 0.016 5.5E-07 63.3 10.2 36 345-382 48-86 (311)
217 1zuh_A Shikimate kinase; alpha 96.1 0.0027 9.1E-08 63.4 3.6 32 837-868 8-39 (168)
218 2ehv_A Hypothetical protein PH 96.1 0.029 9.8E-07 59.0 11.6 36 834-869 28-67 (251)
219 1vma_A Cell division protein F 96.1 0.049 1.7E-06 60.7 14.0 72 835-906 103-197 (306)
220 1y63_A LMAJ004144AAA protein; 96.1 0.0027 9.1E-08 64.9 3.4 33 836-868 10-43 (184)
221 2p5t_B PEZT; postsegregational 96.0 0.0082 2.8E-07 64.6 7.1 38 835-872 31-68 (253)
222 1aky_A Adenylate kinase; ATP:A 96.0 0.0048 1.6E-07 64.6 5.0 33 835-867 3-35 (220)
223 1kag_A SKI, shikimate kinase I 96.0 0.0046 1.6E-07 61.7 4.6 30 837-866 5-34 (173)
224 3lda_A DNA repair protein RAD5 96.0 0.013 4.5E-07 67.8 9.0 77 834-910 176-288 (400)
225 1tev_A UMP-CMP kinase; ploop, 96.0 0.005 1.7E-07 62.2 4.8 31 837-867 4-34 (196)
226 2ze6_A Isopentenyl transferase 96.0 0.0038 1.3E-07 67.4 4.1 32 838-869 3-34 (253)
227 2a5y_B CED-4; apoptosis; HET: 96.0 0.031 1E-06 67.0 12.3 172 804-1013 131-336 (549)
228 3kt9_A Aprataxin; FHA domain, 96.0 0.018 6.3E-07 54.2 8.1 78 3-86 22-99 (102)
229 2c95_A Adenylate kinase 1; tra 95.9 0.0055 1.9E-07 62.2 4.9 33 836-868 9-41 (196)
230 3lw7_A Adenylate kinase relate 95.9 0.0047 1.6E-07 60.8 4.3 29 838-867 3-31 (179)
231 2cdn_A Adenylate kinase; phosp 95.9 0.0059 2E-07 62.8 5.1 32 837-868 21-52 (201)
232 4a74_A DNA repair and recombin 95.9 0.013 4.6E-07 60.7 7.9 27 834-860 23-49 (231)
233 1e6c_A Shikimate kinase; phosp 95.9 0.0054 1.9E-07 61.1 4.4 30 838-867 4-33 (173)
234 4a0e_A YSCD, type III secretio 95.9 0.01 3.5E-07 57.6 6.1 68 3-78 23-91 (123)
235 2zts_A Putative uncharacterize 95.9 0.044 1.5E-06 57.5 11.6 76 834-909 28-149 (251)
236 3cm0_A Adenylate kinase; ATP-b 95.8 0.0054 1.8E-07 62.0 4.1 31 837-867 5-35 (186)
237 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.013 4.6E-07 63.2 7.5 36 837-872 5-43 (260)
238 3t61_A Gluconokinase; PSI-biol 95.8 0.0071 2.4E-07 62.3 5.1 32 836-867 18-49 (202)
239 3bh0_A DNAB-like replicative h 95.8 0.055 1.9E-06 60.3 12.6 36 834-869 66-104 (315)
240 2bwj_A Adenylate kinase 5; pho 95.8 0.0046 1.6E-07 62.9 3.5 31 837-867 13-43 (199)
241 2ius_A DNA translocase FTSK; n 95.7 0.073 2.5E-06 63.5 14.0 75 897-982 299-375 (512)
242 2pt5_A Shikimate kinase, SK; a 95.7 0.0049 1.7E-07 61.2 3.4 31 838-868 2-32 (168)
243 1wv3_A Similar to DNA segregat 95.7 0.012 4.1E-07 63.5 6.6 64 5-76 93-160 (238)
244 3jvv_A Twitching mobility prot 95.7 0.013 4.5E-07 66.7 7.2 69 837-905 124-206 (356)
245 2vli_A Antibiotic resistance p 95.7 0.0052 1.8E-07 61.8 3.4 29 837-865 6-34 (183)
246 1gvn_B Zeta; postsegregational 95.7 0.014 4.8E-07 64.3 7.2 38 835-872 32-69 (287)
247 1ly1_A Polynucleotide kinase; 95.7 0.0052 1.8E-07 61.4 3.3 29 837-865 3-32 (181)
248 3dl0_A Adenylate kinase; phosp 95.7 0.0074 2.5E-07 62.7 4.6 30 838-867 2-31 (216)
249 1qf9_A UMP/CMP kinase, protein 95.7 0.0078 2.7E-07 60.7 4.6 31 837-867 7-37 (194)
250 1kht_A Adenylate kinase; phosp 95.7 0.0067 2.3E-07 61.2 4.1 25 837-861 4-28 (192)
251 1pzn_A RAD51, DNA repair and r 95.7 0.023 8E-07 64.4 9.0 38 834-871 129-175 (349)
252 1ak2_A Adenylate kinase isoenz 95.7 0.0086 2.9E-07 63.4 5.1 32 836-867 16-47 (233)
253 3tlx_A Adenylate kinase 2; str 95.7 0.0087 3E-07 64.1 5.2 33 835-867 28-60 (243)
254 3fb4_A Adenylate kinase; psych 95.6 0.0076 2.6E-07 62.5 4.6 30 838-867 2-31 (216)
255 1ukz_A Uridylate kinase; trans 95.6 0.0061 2.1E-07 62.7 3.8 33 836-868 15-47 (203)
256 2i1q_A DNA repair and recombin 95.6 0.013 4.5E-07 65.2 6.7 76 834-909 96-218 (322)
257 3dm5_A SRP54, signal recogniti 95.6 0.047 1.6E-06 64.0 11.5 203 835-1069 99-342 (443)
258 1zd8_A GTP:AMP phosphotransfer 95.6 0.0077 2.6E-07 63.4 4.5 32 836-867 7-38 (227)
259 1knq_A Gluconate kinase; ALFA/ 95.6 0.01 3.4E-07 59.5 5.1 31 836-866 8-38 (175)
260 3be4_A Adenylate kinase; malar 95.6 0.0078 2.7E-07 63.0 4.4 31 837-867 6-36 (217)
261 1zp6_A Hypothetical protein AT 95.5 0.0065 2.2E-07 61.6 3.5 37 835-871 8-44 (191)
262 2p65_A Hypothetical protein PF 95.5 0.019 6.4E-07 57.0 6.7 52 542-597 103-160 (187)
263 3umf_A Adenylate kinase; rossm 95.5 0.0099 3.4E-07 63.2 4.9 32 835-866 28-59 (217)
264 3sr0_A Adenylate kinase; phosp 95.5 0.0093 3.2E-07 62.8 4.5 29 838-866 2-30 (206)
265 2r6a_A DNAB helicase, replicat 95.5 0.041 1.4E-06 64.4 10.4 37 833-869 200-240 (454)
266 1nlf_A Regulatory protein REPA 95.4 0.053 1.8E-06 58.9 10.6 26 835-860 29-54 (279)
267 3e1s_A Exodeoxyribonuclease V, 95.4 0.0081 2.8E-07 72.7 4.4 32 837-868 205-239 (574)
268 2qby_B CDC6 homolog 3, cell di 95.4 0.15 5.3E-06 57.0 14.6 36 344-381 45-91 (384)
269 1cr0_A DNA primase/helicase; R 95.4 0.059 2E-06 58.9 10.9 35 834-868 33-71 (296)
270 2pbr_A DTMP kinase, thymidylat 95.4 0.012 4.2E-07 59.3 5.0 32 838-869 2-36 (195)
271 4eun_A Thermoresistant glucoki 95.4 0.012 4.1E-07 60.7 5.0 31 835-865 28-58 (200)
272 2qby_A CDC6 homolog 1, cell di 95.4 0.27 9.1E-06 54.6 16.3 55 542-598 116-172 (386)
273 1zak_A Adenylate kinase; ATP:A 95.4 0.0089 3E-07 62.6 3.9 31 837-867 6-36 (222)
274 2q6t_A DNAB replication FORK h 95.4 0.059 2E-06 62.9 11.2 37 833-869 197-237 (444)
275 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.34 1.2E-05 57.6 17.9 89 647-735 167-270 (500)
276 2pez_A Bifunctional 3'-phospho 95.3 0.016 5.4E-07 58.5 5.5 35 836-870 5-42 (179)
277 2i3b_A HCR-ntpase, human cance 95.3 0.065 2.2E-06 55.5 10.2 23 838-860 3-25 (189)
278 2eyu_A Twitching motility prot 95.2 0.028 9.5E-07 61.2 7.5 70 835-904 24-107 (261)
279 1e4v_A Adenylate kinase; trans 95.2 0.013 4.3E-07 61.2 4.6 30 838-867 2-31 (214)
280 3cmw_A Protein RECA, recombina 95.2 0.034 1.2E-06 74.5 9.5 76 837-912 1432-1526(1706)
281 2fz4_A DNA repair protein RAD2 95.2 0.041 1.4E-06 58.7 8.3 33 838-870 110-142 (237)
282 3kl4_A SRP54, signal recogniti 95.1 0.14 4.7E-06 59.9 13.3 73 835-907 96-191 (433)
283 3crm_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 66.0 4.4 34 837-870 6-39 (323)
284 2jaq_A Deoxyguanosine kinase; 95.1 0.014 4.6E-07 59.5 4.2 29 838-866 2-30 (205)
285 2v54_A DTMP kinase, thymidylat 95.1 0.015 5.1E-07 59.5 4.5 34 836-869 4-38 (204)
286 1cke_A CK, MSSA, protein (cyti 95.1 0.016 5.6E-07 60.3 4.8 30 837-866 6-35 (227)
287 2ga8_A Hypothetical 39.9 kDa p 95.0 0.012 4.1E-07 67.1 3.9 30 837-866 25-54 (359)
288 1nks_A Adenylate kinase; therm 95.0 0.0094 3.2E-07 60.1 2.8 32 838-869 3-37 (194)
289 2xb4_A Adenylate kinase; ATP-b 95.0 0.015 5.2E-07 61.2 4.4 30 838-867 2-31 (223)
290 2z0h_A DTMP kinase, thymidylat 95.0 0.019 6.6E-07 58.2 5.0 31 839-869 3-36 (197)
291 3pvs_A Replication-associated 94.8 0.1 3.5E-06 61.1 11.3 32 345-378 51-82 (447)
292 2if2_A Dephospho-COA kinase; a 94.8 0.012 4.1E-07 60.5 3.0 30 838-868 3-32 (204)
293 3ake_A Cytidylate kinase; CMP 94.8 0.02 7E-07 58.5 4.6 31 838-868 4-34 (208)
294 2plr_A DTMP kinase, probable t 94.7 0.029 9.9E-07 57.4 5.6 32 837-868 5-38 (213)
295 3uie_A Adenylyl-sulfate kinase 94.7 0.029 1E-06 57.8 5.6 37 835-871 24-63 (200)
296 3b6e_A Interferon-induced heli 94.7 0.067 2.3E-06 54.7 8.3 24 837-860 49-72 (216)
297 1uf9_A TT1252 protein; P-loop, 94.7 0.021 7.1E-07 58.2 4.4 32 836-868 8-39 (203)
298 4e22_A Cytidylate kinase; P-lo 94.7 0.025 8.7E-07 60.8 5.2 32 835-866 26-57 (252)
299 2bbw_A Adenylate kinase 4, AK4 94.7 0.022 7.5E-07 60.7 4.7 30 836-865 27-56 (246)
300 2chq_A Replication factor C sm 94.7 0.076 2.6E-06 57.8 9.0 41 555-598 101-141 (319)
301 3bgw_A DNAB-like replicative h 94.6 0.15 5E-06 59.8 11.9 38 833-870 194-234 (444)
302 2ewv_A Twitching motility prot 94.6 0.035 1.2E-06 63.5 6.5 71 835-905 135-219 (372)
303 1q57_A DNA primase/helicase; d 94.6 0.11 3.9E-06 61.4 11.0 37 834-870 240-280 (503)
304 2wwf_A Thymidilate kinase, put 94.6 0.011 3.9E-07 60.8 2.1 28 836-863 10-37 (212)
305 1g5t_A COB(I)alamin adenosyltr 94.6 0.19 6.4E-06 52.7 11.3 113 837-965 29-174 (196)
306 1fnn_A CDC6P, cell division co 94.5 0.44 1.5E-05 53.2 15.2 51 542-597 113-167 (389)
307 3hws_A ATP-dependent CLP prote 94.5 0.033 1.1E-06 62.9 5.9 67 314-382 21-87 (363)
308 1p9r_A General secretion pathw 94.5 0.12 4.2E-06 60.0 10.8 93 798-905 144-246 (418)
309 1jr3_A DNA polymerase III subu 94.5 0.12 4E-06 57.8 10.2 51 544-597 106-157 (373)
310 3r20_A Cytidylate kinase; stru 94.5 0.028 9.5E-07 60.4 4.8 30 837-866 10-39 (233)
311 2grj_A Dephospho-COA kinase; T 94.4 0.019 6.5E-07 59.7 3.4 31 838-868 14-44 (192)
312 1nn5_A Similar to deoxythymidy 94.4 0.014 4.8E-07 60.1 2.2 26 836-861 9-34 (215)
313 2brf_A Bifunctional polynucleo 94.3 0.087 3E-06 50.2 7.3 77 4-86 29-105 (110)
314 3nwj_A ATSK2; P loop, shikimat 94.3 0.031 1E-06 60.6 4.7 32 837-868 49-80 (250)
315 1vt4_I APAF-1 related killer D 94.3 0.19 6.6E-06 64.4 12.5 44 803-859 130-173 (1221)
316 1jjv_A Dephospho-COA kinase; P 94.3 0.025 8.5E-07 58.3 3.9 29 838-867 4-32 (206)
317 3a8t_A Adenylate isopentenyltr 94.2 0.019 6.6E-07 64.9 3.1 34 837-870 41-74 (339)
318 4gp7_A Metallophosphoesterase; 94.2 0.11 3.9E-06 52.2 8.5 20 836-855 9-28 (171)
319 1uj2_A Uridine-cytidine kinase 94.2 0.041 1.4E-06 58.9 5.5 37 837-873 23-67 (252)
320 2yvu_A Probable adenylyl-sulfa 94.1 0.056 1.9E-06 54.7 6.0 36 835-870 12-50 (186)
321 2px0_A Flagellar biosynthesis 94.0 0.2 7E-06 55.4 10.7 36 835-870 104-143 (296)
322 3foz_A TRNA delta(2)-isopenten 94.0 0.036 1.2E-06 62.1 4.5 36 836-871 10-45 (316)
323 2gxq_A Heat resistant RNA depe 93.9 0.14 4.8E-06 52.2 8.7 23 837-859 39-62 (207)
324 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.039 1.3E-06 62.1 4.6 69 837-905 172-250 (330)
325 1q3t_A Cytidylate kinase; nucl 93.8 0.049 1.7E-06 57.7 5.1 32 836-867 16-47 (236)
326 1yj5_C 5' polynucleotide kinas 93.7 0.15 5.3E-06 50.4 8.0 78 4-87 29-106 (143)
327 1vht_A Dephospho-COA kinase; s 93.7 0.05 1.7E-06 56.5 4.8 30 837-867 5-34 (218)
328 2h92_A Cytidylate kinase; ross 93.7 0.048 1.6E-06 56.6 4.6 32 837-868 4-35 (219)
329 3pie_A 5'->3' exoribonuclease 93.6 0.034 1.2E-06 71.0 3.9 77 435-521 1050-1126(1155)
330 2qor_A Guanylate kinase; phosp 93.6 0.038 1.3E-06 57.1 3.7 27 835-861 11-37 (204)
331 1xx6_A Thymidine kinase; NESG, 93.6 0.21 7.1E-06 51.9 9.3 69 837-907 9-93 (191)
332 4a1f_A DNAB helicase, replicat 93.5 0.18 6.2E-06 57.0 9.3 37 833-869 43-82 (338)
333 1qde_A EIF4A, translation init 93.5 0.36 1.2E-05 49.9 11.0 60 797-859 13-75 (224)
334 3d3q_A TRNA delta(2)-isopenten 93.4 0.038 1.3E-06 62.6 3.5 34 837-870 8-41 (340)
335 1ltq_A Polynucleotide kinase; 93.4 0.044 1.5E-06 59.8 3.9 31 837-867 3-34 (301)
336 2f6r_A COA synthase, bifunctio 93.4 0.039 1.3E-06 60.5 3.5 31 836-867 75-105 (281)
337 2qt1_A Nicotinamide riboside k 93.3 0.029 1E-06 57.9 2.3 31 836-866 21-52 (207)
338 3zvl_A Bifunctional polynucleo 93.2 0.068 2.3E-06 62.0 5.2 31 836-866 258-288 (416)
339 1m7g_A Adenylylsulfate kinase; 93.1 0.066 2.2E-06 55.6 4.6 36 836-871 25-64 (211)
340 2xau_A PRE-mRNA-splicing facto 93.1 0.27 9.3E-06 61.5 10.9 59 799-859 73-132 (773)
341 3exa_A TRNA delta(2)-isopenten 93.1 0.048 1.7E-06 61.2 3.6 34 837-870 4-37 (322)
342 1um8_A ATP-dependent CLP prote 93.0 0.087 3E-06 59.6 5.8 68 314-383 27-109 (376)
343 4b3f_X DNA-binding protein smu 92.9 0.41 1.4E-05 58.5 11.9 69 806-900 191-262 (646)
344 2pl3_A Probable ATP-dependent 92.9 0.31 1.1E-05 51.0 9.5 55 797-854 24-80 (236)
345 2bdt_A BH3686; alpha-beta prot 92.9 0.065 2.2E-06 54.3 4.1 25 838-862 4-28 (189)
346 2yhs_A FTSY, cell division pro 92.9 0.88 3E-05 54.0 14.1 26 835-860 292-317 (503)
347 2oap_1 GSPE-2, type II secreti 92.8 0.076 2.6E-06 63.4 5.1 69 837-905 261-343 (511)
348 1ujx_A Polynucleotide kinase 3 92.8 0.12 4E-06 50.0 5.4 77 4-86 36-112 (119)
349 3fdi_A Uncharacterized protein 92.8 0.067 2.3E-06 55.8 4.1 29 838-866 8-36 (201)
350 3eph_A TRNA isopentenyltransfe 92.8 0.063 2.2E-06 62.1 4.2 33 837-869 3-35 (409)
351 3llm_A ATP-dependent RNA helic 92.8 0.43 1.5E-05 50.3 10.4 21 837-857 77-97 (235)
352 1sxj_B Activator 1 37 kDa subu 92.8 0.15 5E-06 55.6 6.9 39 556-597 107-145 (323)
353 2z4s_A Chromosomal replication 92.7 0.14 4.9E-06 59.6 7.2 33 344-378 130-167 (440)
354 3tau_A Guanylate kinase, GMP k 92.7 0.059 2E-06 56.0 3.5 27 835-861 7-33 (208)
355 2j41_A Guanylate kinase; GMP, 92.7 0.067 2.3E-06 54.6 3.9 25 836-860 6-30 (207)
356 1kgd_A CASK, peripheral plasma 92.7 0.07 2.4E-06 54.1 3.9 25 837-861 6-30 (180)
357 1w4r_A Thymidine kinase; type 92.6 0.17 5.9E-06 52.9 6.9 69 836-907 20-103 (195)
358 3asz_A Uridine kinase; cytidin 92.5 0.074 2.5E-06 54.8 3.9 27 835-861 5-31 (211)
359 1t6n_A Probable ATP-dependent 92.4 0.73 2.5E-05 47.5 11.4 59 798-859 14-74 (220)
360 2axn_A 6-phosphofructo-2-kinas 92.3 0.19 6.6E-06 60.0 7.7 35 837-871 36-73 (520)
361 1vec_A ATP-dependent RNA helic 92.3 0.3 1E-05 49.7 8.2 18 837-854 41-58 (206)
362 3tr0_A Guanylate kinase, GMP k 92.3 0.086 2.9E-06 53.8 4.0 26 836-861 7-32 (205)
363 1ex7_A Guanylate kinase; subst 92.2 0.091 3.1E-06 54.5 4.1 27 837-863 2-28 (186)
364 2j37_W Signal recognition part 92.2 0.29 1E-05 58.2 8.9 73 835-907 100-195 (504)
365 2qmh_A HPR kinase/phosphorylas 92.2 0.055 1.9E-06 57.0 2.4 34 835-869 33-66 (205)
366 2j9r_A Thymidine kinase; TK1, 92.0 0.4 1.4E-05 50.8 8.8 31 838-868 30-63 (214)
367 2xxa_A Signal recognition part 92.0 0.34 1.2E-05 56.5 9.2 74 834-907 98-195 (433)
368 1j8m_F SRP54, signal recogniti 92.0 0.53 1.8E-05 52.1 10.2 72 836-907 98-192 (297)
369 1rz3_A Hypothetical protein rb 91.9 0.16 5.4E-06 52.4 5.5 35 836-870 22-59 (201)
370 3e70_C DPA, signal recognition 91.8 0.38 1.3E-05 54.1 9.0 26 835-860 128-153 (328)
371 1zu4_A FTSY; GTPase, signal re 91.7 1.6 5.5E-05 48.8 13.9 37 834-870 103-142 (320)
372 3c8u_A Fructokinase; YP_612366 91.7 0.092 3.1E-06 54.4 3.5 27 835-861 21-47 (208)
373 1ls1_A Signal recognition part 91.5 0.5 1.7E-05 52.2 9.3 73 835-907 97-192 (295)
374 1lvg_A Guanylate kinase, GMP k 91.5 0.1 3.5E-06 53.9 3.5 26 836-861 4-29 (198)
375 2ffh_A Protein (FFH); SRP54, s 91.2 0.91 3.1E-05 52.9 11.5 73 835-907 97-192 (425)
376 1gtv_A TMK, thymidylate kinase 91.2 0.063 2.2E-06 55.2 1.6 24 838-861 2-25 (214)
377 3a00_A Guanylate kinase, GMP k 91.1 0.12 4.1E-06 52.6 3.6 25 837-861 2-26 (186)
378 1x6v_B Bifunctional 3'-phospho 91.0 0.16 5.4E-06 62.0 5.1 34 837-870 53-89 (630)
379 3thx_B DNA mismatch repair pro 91.0 0.5 1.7E-05 60.2 9.7 23 836-858 673-695 (918)
380 3huf_A DNA repair and telomere 91.0 0.52 1.8E-05 52.6 8.7 76 4-80 21-107 (325)
381 3gmt_A Adenylate kinase; ssgci 91.0 0.16 5.4E-06 54.5 4.5 31 837-867 9-39 (230)
382 1njg_A DNA polymerase III subu 90.8 0.21 7.3E-06 50.9 5.2 41 555-598 125-165 (250)
383 1tf7_A KAIC; homohexamer, hexa 90.8 1 3.5E-05 53.5 11.7 74 835-908 280-384 (525)
384 3hdt_A Putative kinase; struct 90.7 0.15 5.1E-06 54.2 4.0 30 837-866 15-44 (223)
385 2v3c_C SRP54, signal recogniti 90.7 0.18 6E-06 58.9 4.9 36 835-870 98-136 (432)
386 3iuy_A Probable ATP-dependent 90.5 0.5 1.7E-05 49.1 7.8 18 837-854 58-75 (228)
387 1sky_E F1-ATPase, F1-ATP synth 90.3 0.22 7.6E-06 58.7 5.3 24 837-860 152-175 (473)
388 3fe2_A Probable ATP-dependent 90.3 0.46 1.6E-05 50.1 7.3 55 797-854 28-84 (242)
389 1tf7_A KAIC; homohexamer, hexa 90.2 1.2 4.2E-05 52.8 11.8 36 834-869 37-76 (525)
390 3ney_A 55 kDa erythrocyte memb 90.1 0.18 6.1E-06 52.8 3.8 25 837-861 20-44 (197)
391 1c9k_A COBU, adenosylcobinamid 90.0 0.17 5.8E-06 52.3 3.5 32 839-871 2-33 (180)
392 4eaq_A DTMP kinase, thymidylat 90.0 0.2 7E-06 53.1 4.3 32 836-867 26-59 (229)
393 1q0u_A Bstdead; DEAD protein, 90.0 0.51 1.8E-05 48.8 7.3 18 837-854 42-59 (219)
394 3b9q_A Chloroplast SRP recepto 89.7 0.36 1.2E-05 53.5 6.2 26 835-860 99-124 (302)
395 3ber_A Probable ATP-dependent 89.6 0.67 2.3E-05 49.3 8.0 18 837-854 81-98 (249)
396 1a7j_A Phosphoribulokinase; tr 89.5 0.16 5.3E-06 56.1 3.0 36 837-872 6-44 (290)
397 1htw_A HI0065; nucleotide-bind 89.5 0.24 8.1E-06 49.8 4.1 26 835-860 32-57 (158)
398 1znw_A Guanylate kinase, GMP k 89.5 0.22 7.5E-06 51.5 3.9 26 836-861 20-45 (207)
399 2gza_A Type IV secretion syste 89.5 0.33 1.1E-05 55.1 5.7 70 836-905 175-262 (361)
400 2zj8_A DNA helicase, putative 89.4 1.4 4.8E-05 54.2 11.8 19 836-854 39-57 (720)
401 1z6g_A Guanylate kinase; struc 89.4 0.21 7.1E-06 52.4 3.8 26 835-860 22-47 (218)
402 3ice_A Transcription terminati 89.4 0.71 2.4E-05 53.3 8.3 25 836-860 174-198 (422)
403 3tbk_A RIG-I helicase domain; 89.4 1.2 4.2E-05 51.8 10.7 23 837-859 20-42 (555)
404 3lxx_A GTPase IMAP family memb 89.3 1.1 3.6E-05 47.1 9.2 23 837-859 30-52 (239)
405 2jeo_A Uridine-cytidine kinase 89.3 0.24 8.2E-06 52.7 4.2 27 837-863 26-52 (245)
406 1s96_A Guanylate kinase, GMP k 89.0 0.24 8.3E-06 52.3 3.9 27 835-861 15-41 (219)
407 3p32_A Probable GTPase RV1496/ 88.8 0.86 2.9E-05 51.4 8.5 33 836-868 79-114 (355)
408 1xjc_A MOBB protein homolog; s 88.7 0.47 1.6E-05 48.4 5.6 32 837-868 5-39 (169)
409 3tqf_A HPR(Ser) kinase; transf 88.6 0.34 1.1E-05 50.0 4.4 29 835-864 15-43 (181)
410 1odf_A YGR205W, hypothetical 3 88.6 0.46 1.6E-05 52.4 5.9 27 835-861 30-56 (290)
411 3h1t_A Type I site-specific re 88.5 1 3.5E-05 54.0 9.4 24 837-860 199-222 (590)
412 1wb9_A DNA mismatch repair pro 88.4 2 6.8E-05 54.0 12.1 25 835-859 606-630 (800)
413 2ged_A SR-beta, signal recogni 88.4 0.47 1.6E-05 47.4 5.4 26 835-860 47-72 (193)
414 2oxc_A Probable ATP-dependent 88.4 1.1 3.7E-05 46.8 8.4 54 797-853 23-78 (230)
415 3lxw_A GTPase IMAP family memb 88.3 2.3 7.9E-05 45.2 11.0 24 835-858 20-43 (247)
416 2ocp_A DGK, deoxyguanosine kin 88.3 0.33 1.1E-05 51.3 4.3 25 837-861 3-27 (241)
417 1m8p_A Sulfate adenylyltransfe 88.2 0.34 1.2E-05 58.6 4.8 35 837-871 397-435 (573)
418 1s2m_A Putative ATP-dependent 88.1 1.9 6.6E-05 48.2 10.9 58 797-857 20-79 (400)
419 2v9p_A Replication protein E1; 88.1 0.31 1E-05 54.4 4.1 28 834-861 124-151 (305)
420 3thx_A DNA mismatch repair pro 88.1 1.1 3.7E-05 57.2 9.6 21 837-857 663-683 (934)
421 1p5z_B DCK, deoxycytidine kina 88.0 0.14 4.8E-06 55.0 1.3 30 835-864 23-53 (263)
422 2w58_A DNAI, primosome compone 88.0 0.44 1.5E-05 48.5 5.0 81 288-379 7-90 (202)
423 1xti_A Probable ATP-dependent 87.9 3.1 0.00011 46.1 12.4 22 837-858 46-67 (391)
424 2va8_A SSO2462, SKI2-type heli 87.9 1.9 6.4E-05 53.0 11.3 20 836-855 46-65 (715)
425 3bos_A Putative DNA replicatio 87.8 0.64 2.2E-05 47.9 6.2 27 343-371 51-77 (242)
426 3lnc_A Guanylate kinase, GMP k 87.8 0.2 6.7E-06 52.7 2.2 27 835-861 26-53 (231)
427 2fwr_A DNA repair protein RAD2 87.7 0.39 1.3E-05 55.7 4.9 33 838-870 110-142 (472)
428 2og2_A Putative signal recogni 87.6 0.62 2.1E-05 53.1 6.3 26 835-860 156-181 (359)
429 3k53_A Ferrous iron transport 87.3 0.69 2.4E-05 49.9 6.2 23 837-859 4-26 (271)
430 1wp9_A ATP-dependent RNA helic 87.3 1.4 4.9E-05 49.7 9.2 32 838-869 25-60 (494)
431 4edh_A DTMP kinase, thymidylat 87.2 0.56 1.9E-05 49.4 5.3 32 837-868 7-41 (213)
432 3kta_A Chromosome segregation 87.0 0.35 1.2E-05 48.5 3.4 24 838-861 28-51 (182)
433 1rj9_A FTSY, signal recognitio 86.9 0.4 1.4E-05 53.3 4.2 26 835-860 101-126 (304)
434 3aez_A Pantothenate kinase; tr 86.7 0.4 1.4E-05 53.4 4.1 27 835-861 89-115 (312)
435 3oiy_A Reverse gyrase helicase 86.7 0.67 2.3E-05 52.7 6.0 20 837-856 37-56 (414)
436 1sq5_A Pantothenate kinase; P- 86.6 0.35 1.2E-05 53.6 3.4 26 836-861 80-105 (308)
437 2gk6_A Regulator of nonsense t 86.5 0.58 2E-05 57.0 5.6 23 838-860 197-219 (624)
438 1bif_A 6-phosphofructo-2-kinas 86.4 0.24 8.2E-06 58.1 2.1 33 836-868 39-74 (469)
439 2bjv_A PSP operon transcriptio 86.2 0.91 3.1E-05 48.4 6.4 64 302-382 2-68 (265)
440 1upt_A ARL1, ADP-ribosylation 86.2 0.51 1.8E-05 45.8 4.1 25 835-859 6-30 (171)
441 3n70_A Transport activator; si 86.1 0.51 1.7E-05 46.0 4.0 39 343-384 23-64 (145)
442 3tif_A Uncharacterized ABC tra 85.8 0.39 1.3E-05 51.2 3.2 26 835-860 30-55 (235)
443 2dyk_A GTP-binding protein; GT 85.8 0.45 1.5E-05 45.7 3.4 23 837-859 2-24 (161)
444 1np6_A Molybdopterin-guanine d 85.7 0.52 1.8E-05 48.1 4.0 24 837-860 7-30 (174)
445 3eiq_A Eukaryotic initiation f 85.7 1.2 4E-05 50.1 7.3 56 797-855 39-96 (414)
446 1nrj_B SR-beta, signal recogni 85.7 0.51 1.7E-05 48.4 3.9 25 836-860 12-36 (218)
447 4i1u_A Dephospho-COA kinase; s 85.6 0.42 1.4E-05 50.5 3.3 31 837-868 10-40 (210)
448 3tqc_A Pantothenate kinase; bi 85.6 0.61 2.1E-05 52.3 4.8 27 835-861 91-117 (321)
449 2cbz_A Multidrug resistance-as 85.6 0.4 1.4E-05 51.2 3.2 26 835-860 30-55 (237)
450 2wsm_A Hydrogenase expression/ 85.5 0.54 1.9E-05 48.3 4.1 25 837-861 31-55 (221)
451 2hf9_A Probable hydrogenase ni 85.5 0.82 2.8E-05 47.1 5.4 24 837-860 39-62 (226)
452 2qm8_A GTPase/ATPase; G protei 85.4 1.5 5.3E-05 49.1 8.0 26 835-860 54-79 (337)
453 2v6i_A RNA helicase; membrane, 85.3 1.6 5.6E-05 50.4 8.4 21 837-857 3-24 (431)
454 1zd9_A ADP-ribosylation factor 85.2 2 6.9E-05 42.8 8.1 23 837-859 23-45 (188)
455 3fmp_B ATP-dependent RNA helic 85.2 0.85 2.9E-05 53.0 6.0 53 798-853 92-148 (479)
456 2pcj_A ABC transporter, lipopr 85.1 0.37 1.3E-05 51.0 2.6 26 835-860 29-54 (224)
457 3v9p_A DTMP kinase, thymidylat 84.9 0.75 2.6E-05 49.0 4.9 33 836-868 25-64 (227)
458 2lkc_A Translation initiation 84.6 0.71 2.4E-05 45.2 4.3 24 835-858 7-30 (178)
459 3tmk_A Thymidylate kinase; pho 84.6 1 3.5E-05 47.6 5.7 32 837-868 6-37 (216)
460 3ly5_A ATP-dependent RNA helic 84.6 1.2 4.2E-05 47.7 6.4 18 837-854 92-109 (262)
461 1z2a_A RAS-related protein RAB 84.5 0.56 1.9E-05 45.2 3.5 23 837-859 6-28 (168)
462 1mv5_A LMRA, multidrug resista 84.5 0.47 1.6E-05 50.7 3.1 26 835-860 27-52 (243)
463 2onk_A Molybdate/tungstate ABC 84.5 0.53 1.8E-05 50.4 3.5 25 837-861 25-49 (240)
464 2p67_A LAO/AO transport system 84.4 2.3 7.7E-05 47.7 8.8 26 835-860 55-80 (341)
465 1u8z_A RAS-related protein RAL 84.3 0.55 1.9E-05 45.1 3.2 23 837-859 5-27 (168)
466 1g8f_A Sulfate adenylyltransfe 84.2 0.5 1.7E-05 56.3 3.4 26 837-862 396-421 (511)
467 1b0u_A Histidine permease; ABC 84.2 0.5 1.7E-05 51.3 3.2 27 835-861 31-57 (262)
468 2f9l_A RAB11B, member RAS onco 84.2 0.54 1.9E-05 47.7 3.3 23 837-859 6-28 (199)
469 3iby_A Ferrous iron transport 84.1 1.2 4E-05 48.0 6.1 23 837-859 2-24 (256)
470 3l9o_A ATP-dependent RNA helic 84.1 1.8 6.3E-05 56.2 8.9 32 837-868 200-234 (1108)
471 1g8p_A Magnesium-chelatase 38 84.0 3 0.0001 45.9 9.5 52 302-372 20-71 (350)
472 4ag6_A VIRB4 ATPase, type IV s 84.0 0.9 3.1E-05 51.7 5.4 34 836-869 35-71 (392)
473 1lw7_A Transcriptional regulat 84.0 0.65 2.2E-05 52.5 4.1 28 836-863 170-197 (365)
474 1oix_A RAS-related protein RAB 84.0 0.53 1.8E-05 47.6 3.1 24 837-860 30-53 (191)
475 2f1r_A Molybdopterin-guanine d 83.9 0.44 1.5E-05 48.5 2.4 25 837-861 3-27 (171)
476 1kao_A RAP2A; GTP-binding prot 83.9 0.62 2.1E-05 44.7 3.4 23 837-859 4-26 (167)
477 2ce2_X GTPase HRAS; signaling 83.9 0.59 2E-05 44.7 3.3 24 837-860 4-27 (166)
478 2zu0_C Probable ATP-dependent 83.9 0.6 2.1E-05 50.8 3.7 25 835-859 45-69 (267)
479 2ghi_A Transport protein; mult 83.9 0.53 1.8E-05 51.0 3.2 26 835-860 45-70 (260)
480 2d2e_A SUFC protein; ABC-ATPas 83.8 0.56 1.9E-05 50.4 3.3 25 835-859 28-52 (250)
481 3b85_A Phosphate starvation-in 83.7 0.4 1.4E-05 50.3 2.0 23 837-859 23-45 (208)
482 3cr8_A Sulfate adenylyltranfer 83.6 0.5 1.7E-05 56.9 3.1 38 835-872 368-409 (552)
483 2wjg_A FEOB, ferrous iron tran 83.6 0.68 2.3E-05 46.0 3.7 23 837-859 8-30 (188)
484 1ek0_A Protein (GTP-binding pr 83.6 0.66 2.2E-05 44.8 3.5 24 837-860 4-27 (170)
485 2pze_A Cystic fibrosis transme 83.5 0.5 1.7E-05 50.1 2.8 26 835-860 33-58 (229)
486 2wjy_A Regulator of nonsense t 83.4 0.96 3.3E-05 56.8 5.7 23 838-860 373-395 (800)
487 2ixe_A Antigen peptide transpo 83.4 0.56 1.9E-05 51.2 3.2 27 835-861 44-70 (271)
488 1sgw_A Putative ABC transporte 83.4 0.49 1.7E-05 49.9 2.6 26 835-860 34-59 (214)
489 1g6h_A High-affinity branched- 83.4 0.51 1.7E-05 51.0 2.8 27 835-861 32-58 (257)
490 1w36_D RECD, exodeoxyribonucle 83.3 0.61 2.1E-05 56.6 3.8 24 837-860 165-188 (608)
491 1ko7_A HPR kinase/phosphatase; 83.3 0.64 2.2E-05 52.0 3.6 30 835-865 143-172 (314)
492 2ff7_A Alpha-hemolysin translo 83.2 0.53 1.8E-05 50.6 2.8 27 835-861 34-60 (247)
493 1ky3_A GTP-binding protein YPT 83.2 0.63 2.2E-05 45.5 3.2 24 836-859 8-31 (182)
494 2olj_A Amino acid ABC transpor 83.2 0.58 2E-05 50.9 3.2 27 835-861 49-75 (263)
495 1ewq_A DNA mismatch repair pro 83.2 1.9 6.3E-05 53.9 8.0 23 837-859 577-599 (765)
496 3vkw_A Replicase large subunit 83.1 0.56 1.9E-05 54.9 3.2 22 837-858 162-183 (446)
497 3sop_A Neuronal-specific septi 83.0 0.65 2.2E-05 50.6 3.5 23 838-860 4-26 (270)
498 4a2p_A RIG-I, retinoic acid in 83.0 3.1 0.0001 48.6 9.6 23 837-859 23-45 (556)
499 1z0j_A RAB-22, RAS-related pro 83.0 0.7 2.4E-05 44.7 3.4 24 837-860 7-30 (170)
500 1ji0_A ABC transporter; ATP bi 83.0 0.54 1.9E-05 50.2 2.8 27 835-861 31-57 (240)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.7e-64 Score=624.76 Aligned_cols=546 Identities=28% Similarity=0.432 Sum_probs=383.6
Q ss_pred ccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001309 301 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 380 (1103)
Q Consensus 301 ~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 380 (1103)
-+|+|+..--+ ++.|..|.+.....|+|++. |.+-=-...+.|||+||||| ...+||||+|+++++.++.+|.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~--f~~~g~~~p~GILL~GPPGT--GKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPAL--FKAIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGG--GTSCCCCCCCEEEEECCTTS--CHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHH--HhhcCCCCCCeEEEECCCCC--CHHHHHHHHHHHhCCeEEEEEhH
Confidence 36899998888 89999999999989999987 43322345588999999999 69999999999999999999865
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeeeee
Q 001309 381 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 460 (1103)
Q Consensus 381 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 460 (1103)
++.+ +|+
T Consensus 273 ~l~s-------------------------------------------------------------------------k~~ 279 (806)
T 3cf2_A 273 EIMS-------------------------------------------------------------------------KLA 279 (806)
T ss_dssp HHHS-------------------------------------------------------------------------SCT
T ss_pred Hhhc-------------------------------------------------------------------------ccc
Confidence 4433 122
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhhHH
Q 001309 461 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 540 (1103)
Q Consensus 461 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~k~ 540 (1103)
|. ...
T Consensus 280 ge---------------------------------------------------------------------------se~ 284 (806)
T 3cf2_A 280 GE---------------------------------------------------------------------------SES 284 (806)
T ss_dssp TH---------------------------------------------------------------------------HHH
T ss_pred hH---------------------------------------------------------------------------HHH
Confidence 21 122
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCCC
Q 001309 541 AINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGG 610 (1103)
Q Consensus 541 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~----~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~ 610 (1103)
.+..+|+.+.. .+|.||||+|+|.+... + .++.+.|...++.+. ++|+|||+||++|.
T Consensus 285 ~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~--------- 352 (806)
T 3cf2_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------- 352 (806)
T ss_dssp HHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT---------
T ss_pred HHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh---------
Confidence 34566666544 89999999999996542 1 345555666666664 48999999996554
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccch
Q 001309 611 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 688 (1103)
Q Consensus 611 ~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 688 (1103)
||+ ||+| ||++++++++||..+|.+|
T Consensus 353 -------------LD~---------------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 353 -------------IDP---------------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp -------------SCT---------------------------------------TTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred -------------cCH---------------------------------------HHhCCcccceEEecCCCCHHHHHHH
Confidence 333 8888 9999999999999999999
Q ss_pred hHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCC-CCcc-ccccCchhhhHHHHHhhhhh
Q 001309 689 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSE 765 (1103)
Q Consensus 689 l~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl-~id~~sI~v~~~df~~a~~e 765 (1103)
+++|+. ...+ .++++..||..|.||+|+||+.||++|+..|+.|..+.+.. .... ....+++.+...||..++.+
T Consensus 381 L~~~l~--~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~ 458 (806)
T 3cf2_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp HHHTCS--SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSS
T ss_pred HHHHhc--CCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHh
Confidence 999974 2223 77899999999999999999999999999999987654322 1111 11223456677788877766
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCC
Q 001309 766 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 845 (1103)
Q Consensus 766 ik~~~~sik~~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPp 845 (1103)
++|... ... ....+.++|++|+|++++++.|.+.+.+|+.+|+.|.+.+ ..+++++||||||
T Consensus 459 ~~ps~~----------------r~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPP 520 (806)
T 3cf2_A 459 SNPSAL----------------RET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPP 520 (806)
T ss_dssp SSCCCC----------------CCC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESST
T ss_pred CCCccc----------------ccc-cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCC
Confidence 655321 011 1122367999999999999999999999999999999887 4567999999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHH
Q 001309 846 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKM 923 (1103)
Q Consensus 846 GTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~v 923 (1103)
|||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|++.+|+||||||||.|++.|... .......++
T Consensus 521 GtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv 600 (806)
T 3cf2_A 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600 (806)
T ss_dssp TSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHH
T ss_pred CCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887542 344567789
Q ss_pred HHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHH
Q 001309 924 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANM 1001 (1103)
Q Consensus 924 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~ 1001 (1103)
+++|+.+|+++... .+|+||+|||+|+.||++++| ||++.+++++|+.++|.+||+.++++..+..+++++.||..
T Consensus 601 ~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~ 678 (806)
T 3cf2_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------
T ss_pred HHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh
Confidence 99999999998754 679999999999999999999 99999999999999999999999999888899999999999
Q ss_pred cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhh
Q 001309 1002 ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL 1081 (1103)
Q Consensus 1002 TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~ 1081 (1103)
|+||||+||.++|++|++.++|+.++........... .............++|+++||++|+++++||++.+ .+..+
T Consensus 679 t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y 755 (806)
T 3cf2_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKY 755 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC-----------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-CccccccccccccCccCHHHHHHHHHhCCCCCCHH--HHHHH
Confidence 9999999999999999999999987654321110000 00001111223456899999999999999999876 34456
Q ss_pred hHHHHhhc
Q 001309 1082 LQWNELYG 1089 (1103)
Q Consensus 1082 v~W~digG 1089 (1103)
.+|.+.++
T Consensus 756 ~~~~~~f~ 763 (806)
T 3cf2_A 756 EMFAQTLQ 763 (806)
T ss_dssp CCCC----
T ss_pred HHHHHHHh
Confidence 66655543
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=388.20 Aligned_cols=247 Identities=34% Similarity=0.591 Sum_probs=227.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .|++|+|||||||||||+||+|+|++++++|+.++++++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4789999999999999999999999999999999884 567999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
|.|++++.++.+|..|+..+|+||||||||.+++.|... +......+++++|+..|+++... .+|+||+|||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence 999999999999999999999999999999999887543 33445677889999999998654 67999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|++.|+++
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------- 372 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------- 372 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999999 9999999999999999999999999999889999999999999999999999999999988874
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1071 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~ 1071 (1103)
....|+++||..|++++.+..
T Consensus 373 -------------------~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 373 -------------------RRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp -------------------TCSBCCHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCcCHHHHHHHHHHHhCcc
Confidence 124699999999999987653
No 3
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.4e-43 Score=443.18 Aligned_cols=545 Identities=28% Similarity=0.431 Sum_probs=372.6
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 001309 302 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 381 (1103)
Q Consensus 302 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~ 381 (1103)
.++|++.--+ +..+..|.+.....++|+++.+ +---.....|||.||+|| -..+||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~--~l~i~~~~~vLL~Gp~Gt--GKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGT--SSCCCCCCEEEECSCTTS--SHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHH--hcCCCCCCeEEEECcCCC--CHHHHHHHHHHHcCCcEEEEEchH
Confidence 5889987777 8888888888888899987632 211345678999999999 699999999999998887777533
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeeeeec
Q 001309 382 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 461 (1103)
Q Consensus 382 ~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g 461 (1103)
+.+. |.|
T Consensus 274 l~~~-------------------------------------------------------------------------~~g 280 (806)
T 1ypw_A 274 IMSK-------------------------------------------------------------------------LAG 280 (806)
T ss_dssp HSSS-------------------------------------------------------------------------STT
T ss_pred hhhh-------------------------------------------------------------------------hhh
Confidence 3220 000
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhhHHH
Q 001309 462 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 541 (1103)
Q Consensus 462 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~k~~ 541 (1103)
. ....
T Consensus 281 ~---------------------------------------------------------------------------~~~~ 285 (806)
T 1ypw_A 281 E---------------------------------------------------------------------------SESN 285 (806)
T ss_dssp H---------------------------------------------------------------------------HHHH
T ss_pred h---------------------------------------------------------------------------HHHH
Confidence 0 0111
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCCCc
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGL 611 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~----~~~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~k~~~~~~ 611 (1103)
+..+|+-... ..|.||||+|++.++.. . .++.+.+...++.+ ..+|+||+++|+++.
T Consensus 286 l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~---------- 352 (806)
T 1ypw_A 286 LRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS---------- 352 (806)
T ss_dssp HHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT----------
T ss_pred HHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh----------
Confidence 2344444443 67999999999986552 1 23344455555555 348999999995333
Q ss_pred eeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchh
Q 001309 612 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 689 (1103)
Q Consensus 612 ~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il 689 (1103)
+++ +++| ||++++++++|+...|.+|+
T Consensus 353 --------------------ld~-------------------------------al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 353 --------------------IDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp --------------------SCT-------------------------------TTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred --------------------cCH-------------------------------HHhcccccccccccCCCCHHHHHHHH
Confidence 222 4444 66667777777777778888
Q ss_pred HHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCC-Ccc-ccccCchhhhHHHHHhhhhhh
Q 001309 690 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKL-KISTESIMYGLNILQGIQSES 766 (1103)
Q Consensus 690 ~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl-~id~~sI~v~~~df~~a~~ei 766 (1103)
++|. ....+ .+.++..++..+.+|.++++..+|..|+..++.+....+... ..+ ......+.+...+|..++...
T Consensus 382 ~~~~--~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 382 QIHT--KNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHTT--TTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred HHHH--hcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhcccccc
Confidence 7774 23333 667899999999999999999999999988887654322110 000 000011112222333222111
Q ss_pred hhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCC
Q 001309 767 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 846 (1103)
Q Consensus 767 k~~~~sik~~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpG 846 (1103)
.+.. .... ....+.++|++++|++++++.|.+.+..++.+++.|...++ .++.++||+||||
T Consensus 460 ~~s~----------------~~~~-~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~GppG 521 (806)
T 1ypw_A 460 NPSA----------------LRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPG 521 (806)
T ss_dssp CCCC----------------CCCC-CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCTT
T ss_pred Cchh----------------hhhh-cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEECCCC
Confidence 1100 0001 11223678999999999999999999999999998887764 4568899999999
Q ss_pred ChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHH
Q 001309 847 TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMK 924 (1103)
Q Consensus 847 TGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl 924 (1103)
||||+||+++|.+++.+++.++++++.+.|+|+.+..++.+|..|+...|+||||||||.|+..+... .......+++
T Consensus 522 tGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~ 601 (806)
T 1ypw_A 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp SSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777543 2345678899
Q ss_pred HhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHc
Q 001309 925 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA 1002 (1103)
Q Consensus 925 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~T 1002 (1103)
++|+..+++.... .+++||+|||+++.||++++| ||+..+++++|+.++|.+||+.++.+..+..+.++..++..+
T Consensus 602 ~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t 679 (806)
T 1ypw_A 602 NQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679 (806)
T ss_dssp HHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGG
T ss_pred HHHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhc
Confidence 9999999987543 679999999999999999999 999999999999999999999999888888888999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhh
Q 001309 1003 DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELL 1082 (1103)
Q Consensus 1003 eGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v 1082 (1103)
+||+++||.++|+.|+..++++.++.......... ...............+++++||..|++.++|+++.+ ....+.
T Consensus 680 ~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye 756 (806)
T 1ypw_A 680 NGFSGADLTEICQRACKLAIRESIESEIRRERERQ-TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYE 756 (806)
T ss_dssp SSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC----------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccccccccccccccCccCHHHHHHHHHhCCCCCCHH--HHHHHH
Confidence 99999999999999999999886544221110000 000000111123356899999999999999998766 566678
Q ss_pred HHHHhhc
Q 001309 1083 QWNELYG 1089 (1103)
Q Consensus 1083 ~W~digG 1089 (1103)
+|.+.++
T Consensus 757 ~~~~~~~ 763 (806)
T 1ypw_A 757 MFAQTLQ 763 (806)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 8877653
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-40 Score=382.33 Aligned_cols=260 Identities=32% Similarity=0.573 Sum_probs=227.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|+|++++++|+.++++++.++
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 4689999999999999999999999999999998884 577999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
|+|++++.++.+|..|+..+|+||||||+|.++..|... +......+++.+++..+++.... .+|+||+|||+++.
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNT 360 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTTS
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCccc
Confidence 999999999999999999999999999999999887543 33445667888999999987654 67999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||+|+||.++|++|++.|+++
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------- 433 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------- 433 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-------
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999999 9999999999999999999999999998889999999999999999999999999999998875
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHH
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1085 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~ 1085 (1103)
....++++||..|++++.++...- .....+.+||
T Consensus 434 -------------------~~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 434 -------------------RRKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp -------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred -------------------CCCccCHHHHHHHHHHHhcCcccc-hhHHHHHhhC
Confidence 124589999999999987664332 2234566775
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-40 Score=382.04 Aligned_cols=251 Identities=35% Similarity=0.620 Sum_probs=227.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|+|++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 34789999999999999999999999999999998884 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
+|+|++++.++.+|..|+..+|+||||||||.++..|.... ......+++.+|+..++++... .+|+||+|||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 99999999999999999999999999999999998875432 2334567788899999987654 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|+..|+++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998889999999999999999999999999999988874
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
....|+++||..|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCccCHHHHHHHHHHHhCCCChh
Confidence 123589999999999998775443
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-40 Score=381.91 Aligned_cols=250 Identities=32% Similarity=0.569 Sum_probs=228.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ +|++|||||||||||||+||+|+|++++++|+.++++++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999999885 56799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
+|.|++++.++.+|..|+..+|+||||||+|.+++.|.... ......+++.+|+..++++... .+|+||+|||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998875532 2345567888999999998754 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|+..++++
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~------ 405 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN------ 405 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH------
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998889999999999999999999999999999988875
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1073 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~ 1073 (1103)
....|+++||..|+++++|+.+.
T Consensus 406 --------------------~~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 406 --------------------GQSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp --------------------TCSSBCHHHHHHHHHSCSSSCCC
T ss_pred --------------------CCCCcCHHHHHHHHHHHhCCCCc
Confidence 12469999999999999887543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=380.19 Aligned_cols=249 Identities=37% Similarity=0.650 Sum_probs=227.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ .|++|||||||||||||+||+|+|++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 34789999999999999999999999999999999884 57799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
+|.|++++.++.+|..|+..+|+||||||||.+++.|...+ ......+++++|+..++|+... .+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 99999999999999999999999999999999998875432 2345567889999999998654 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.||++++| ||++.|+|++|+.++|.+||+.++.+.....++|+..||..|+||||+||.++|++|+..++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 6999999999999999999999999988888999999999999999999999999999988874
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1072 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s 1072 (1103)
....|+++||..|++++.++..
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhccC
Confidence 1235999999999999987653
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=367.79 Aligned_cols=246 Identities=35% Similarity=0.567 Sum_probs=223.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+.++|+||+|++++++.|++.+.+|+.+|+.|.+.|+ .|++|+|||||||||||++|+|+|++++++|+.++++++.++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 4689999999999999999999999999999999885 567999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
|+|++++.++.+|..|+..+|+||||||+|.++..|... .......+++++|+..++|+... .+++||+|||+++.
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRADT 323 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSSS
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 999999999999999999999999999999999887432 23335677889999999998654 67999999999999
Q ss_pred CcHHHHh--ccccccccC-CCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~-lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
||++++| ||++.|+++ +|+.++|..||+.++.+..+..+++++.||..|+||||+||.++|++|++.|+++
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~------ 397 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK------ 397 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
Confidence 9999999 999999995 8999999999999999998889999999999999999999999999999988875
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh-ccC
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CAS 1070 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v-~pS 1070 (1103)
....++++||++|+..+ +++
T Consensus 398 --------------------~~~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 398 --------------------NRYVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHSCSC
T ss_pred --------------------CCCCCCHHHHHHHHHHhhCcc
Confidence 12368999999999864 444
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-38 Score=394.63 Aligned_cols=287 Identities=37% Similarity=0.585 Sum_probs=254.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+.++|+||+|+++++++|++.+.+|+.+|++|...++ .|++|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3689999999999999999999999999999998884 577999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 955 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 955 (1103)
|.|+.++.++.+|..|++++|+||||||||.|++.+.... .+..++++++|+..|+++... .+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998876533 334577899999999998654 6799999999999999
Q ss_pred HHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001309 956 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1033 (1103)
Q Consensus 956 ~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~ 1033 (1103)
++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+++||.+||++|+..++++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc--
Confidence 99999 99999999999999999999999999888899999999999999999999999999999999886433211
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCccc
Q 001309 1034 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1095 (1103)
Q Consensus 1034 ~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~Rk 1095 (1103)
..........+...++++||..|++.++|+...+.....|.+.|+||+|++.+|+
T Consensus 433 -------~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 433 -------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp -------TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred -------cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHH
Confidence 0000001111235689999999999999999999888999999999999988875
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=330.24 Aligned_cols=291 Identities=36% Similarity=0.641 Sum_probs=242.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 874 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~~s~L~s 874 (1103)
+.++|+||+|++++++.|++.+.+|+.+++.|... ..|++++||+||||||||+||+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 36799999999999999999999999999998742 5677999999999999999999999999 89999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
.+.|..++.++.+|..|+..+|+||||||||.+.+.+... ......+++++++..++++... ..+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998776543 3456678889999999987532 3679999999999999
Q ss_pred cHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001309 955 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1033 (1103)
Q Consensus 955 d~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~ 1033 (1103)
+++++|||+..+.+++|+.++|.+|++.++...... ++.++..|+..++||+|+||.++|++|+..++++.+.......
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999876553 6788999999999999999999999999999998653211000
Q ss_pred HHHHh--------hccCCCC--------------C-CCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcC
Q 001309 1034 ALALA--------ENRASPP--------------L-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1090 (1103)
Q Consensus 1034 ~l~~~--------~~~~~~~--------------~-~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~ 1090 (1103)
..... .....+. . ......++|+++||..|+++++||++.+ .+..+.+|++.||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCS
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHHcc
Confidence 00000 0000000 0 0011235899999999999999999876 56788999999998
Q ss_pred CC
Q 001309 1091 GG 1092 (1103)
Q Consensus 1091 ~~ 1092 (1103)
+|
T Consensus 321 ~~ 322 (322)
T 1xwi_A 321 EG 322 (322)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.4e-34 Score=325.22 Aligned_cols=292 Identities=37% Similarity=0.642 Sum_probs=236.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+.++|++|+|++.+++.|.+.+..|+.+++.|... ..|++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 36789999999999999999999999999998764 4677899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 955 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 955 (1103)
+.|..+..++.+|..|+...|+||||||||.|.+.+.. .......++.++++..++++... ..+++||+|||.++.|+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999876643 22334567778888888876532 36799999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 956 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 956 ~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
++++|||+..+++++|+.++|.+|++.++...... ++.++..|+..++||+++||.++|+.|+..++++..+.......
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999886643 67889999999999999999999999999999987543110000
Q ss_pred HH-Hhh-ccCCC---------------CCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCc
Q 001309 1035 LA-LAE-NRASP---------------PLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1093 (1103)
Q Consensus 1035 l~-~~~-~~~~~---------------~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~ 1093 (1103)
.. ... ....+ ........++|+++||..|++.++||++.+ .+..+.+|+..||.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 322 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 322 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT--HHHHHHHHHHHHC----
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhcCCCC
Confidence 00 000 00000 001112236899999999999999999876 56788999999998873
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=4.9e-34 Score=325.75 Aligned_cols=294 Identities=36% Similarity=0.614 Sum_probs=231.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..+.++|++|+|++.+++.|.+.+..|+.+++.|... ..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3446799999999999999999999999999999763 46778999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
+.+.|..+..++.+|..|+...|+||||||||.|.+.+.. .......++.++|+..++++... ..+++||+|||.++.
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQ 199 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCccc
Confidence 9999999999999999999999999999999999876543 23445677888898888876532 367999999999999
Q ss_pred CcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 954 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 954 Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
++++++|||+..+++++|+.++|.+||+.++..... .++.++..|+..++||+|+||.++|++|+..++++........
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 279 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFK 279 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999988654 3678899999999999999999999999999999864321000
Q ss_pred ----HHHHHhhc-------------cCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCc
Q 001309 1033 ----RALALAEN-------------RASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1093 (1103)
Q Consensus 1033 ----~~l~~~~~-------------~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~ 1093 (1103)
........ .+..........++|+++||..|++.++||++.+ .+..+..|++.||.+|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 355 (355)
T 2qp9_X 280 DVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 355 (355)
T ss_dssp ECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHH--HHHHHHHHHHHTC----
T ss_pred hhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccCCC
Confidence 00000000 0000000112346799999999999999999876 46788999999998764
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.2e-33 Score=327.21 Aligned_cols=293 Identities=36% Similarity=0.617 Sum_probs=233.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSI 872 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~~s~L 872 (1103)
..+.++|++|+|++.+++.|.+.+..|+.+++.|... ..|++++||+||||||||+||+++|+++ +.+|+.++++++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 3456899999999999999999999999999988743 4577899999999999999999999999 899999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+.+.|..+..++.+|..++...|+||||||||.|++.+... ......++.++|+..++++... ..+++||+|||.++
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~ 282 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPW 282 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCcc
Confidence 999999999999999999999999999999999998776543 3345667888999999887532 36799999999999
Q ss_pred CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 953 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 953 ~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
.++++++|||+..+.+++|+.++|..|++.++..... .++.++..|+..++||+|+||.++|+.|+..++++.+.....
T Consensus 283 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~ 362 (444)
T 2zan_A 283 VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 362 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999987654 367889999999999999999999999999999987532110
Q ss_pred HHHHHHh--------hccC---------------CCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhh
Q 001309 1032 ERALALA--------ENRA---------------SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1088 (1103)
Q Consensus 1032 ~~~l~~~--------~~~~---------------~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~dig 1088 (1103)
....... .... ..........++|+++||..|+++++||++.+ .+..+.+|+..|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~--~~~~~~~~~~~~ 440 (444)
T 2zan_A 363 KKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQ--DLLKLKKFTEDF 440 (444)
T ss_dssp EEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHH--HHHHHHHHTSSC
T ss_pred hhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHH
Confidence 0000000 0000 00000111235899999999999999999876 467889999999
Q ss_pred cCCC
Q 001309 1089 GEGG 1092 (1103)
Q Consensus 1089 G~~~ 1092 (1103)
|.+|
T Consensus 441 ~~~~ 444 (444)
T 2zan_A 441 GQEG 444 (444)
T ss_dssp TTTC
T ss_pred cCCC
Confidence 9865
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=312.94 Aligned_cols=286 Identities=37% Similarity=0.619 Sum_probs=232.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
.++|++|+|++.+++.|.+.+..|+.+++.|...++ .+++++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 578999999999999999999999999999988764 5668999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
+|..+..++.+|..|....|+||||||||.|...+... .......+++++++..++++.. ..+++||+|||.++.+
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDII 167 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGGS
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCcccc
Confidence 99999999999999999999999999999997654321 0111223456777888887653 3679999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 955 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 955 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
+++++| ||+..+++++|+.++|.+|++.++.+..+..++++..++..+.||+|+||.++|++|+..+.++.+......
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999 999999999999999999999999988777889999999999999999999999999999998876443211
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhh
Q 001309 1033 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1088 (1103)
Q Consensus 1033 ~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~dig 1088 (1103)
......... ............|+++||..|+++++||++.+ .+..+..|++.+
T Consensus 248 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~--~~~~~~~~~~~~ 300 (301)
T 3cf0_A 248 ERERQTNPS-AMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTL 300 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTCCCSSCHH--HHHHHHHHHHHH
T ss_pred hhhcccccc-cccccccccCCccCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHh
Confidence 100000000 00000112346899999999999999998765 456788998765
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=9.1e-33 Score=327.78 Aligned_cols=281 Identities=38% Similarity=0.614 Sum_probs=229.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|++|+|++..++.|.+.+..++.+++.|...+. .++.++||+||||||||++|++++++++.+|+.++|+++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357999999999999999999999999999998774 4568999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
+|+.+..++.+|..|....|+||||||||.|.+.+... ..+...++.+.|+..+++... +.+++||+|||+++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998776532 234556778888888887643 367999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 957 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 957 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
++++ ||+..+.+++|+.++|.+||+.++....+..+.++..++..+.||+++||.+||+.|+..++++..+...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~---- 431 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID---- 431 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCC----
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccc----
Confidence 9999 9999999999999999999999999888888889999999999999999999999999988886422100
Q ss_pred HHHhhccCCCCC-CCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCC
Q 001309 1035 LALAENRASPPL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1091 (1103)
Q Consensus 1035 l~~~~~~~~~~~-~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~ 1091 (1103)
...... ........++++||..|++++.|+...+.....|.++|+||||..
T Consensus 432 ------~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 432 ------LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp ------TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred ------ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 000000 001123479999999999999999999999999999999999964
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-32 Score=307.74 Aligned_cols=276 Identities=44% Similarity=0.781 Sum_probs=230.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|++|+|++.+++.|.+.+..|+.+++.|... ..+++++||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 5789999999999999999999999998888654 35678999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
.+..+..++.+|..+....|+||||||||.|...+.. ..+....+++++++..+++.......+++||+|||.++.+++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 9999999999999999999999999999999876543 234456778888999998876555678999999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001309 957 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL 1035 (1103)
Q Consensus 957 aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l 1035 (1103)
++++||...+.+++|+.++|.++++.++...... .+.++..|+..++||+++||..||+.|+..+++++......
T Consensus 237 ~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~---- 312 (357)
T 3d8b_A 237 AARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA---- 312 (357)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--------
T ss_pred HHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc----
Confidence 9999999999999999999999999999875443 56789999999999999999999999999988864221110
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCC
Q 001309 1036 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1091 (1103)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~ 1091 (1103)
.....+.++|+++||..|+++++|+...+ .+..++.|++.||.+
T Consensus 313 ----------~~~~~~~~~i~~~d~~~al~~~~ps~~~~--~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 313 ----------TITPDQVRPIAYIDFENAFRTVRPSVSPK--DLELYENWNKTFGCG 356 (357)
T ss_dssp ----------------CCCBCHHHHHHHHHHHGGGCCCC--CHHHHHHHHHHHSCC
T ss_pred ----------cccccccCCcCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCCC
Confidence 01112457899999999999999998766 567789999999975
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=8.5e-32 Score=297.08 Aligned_cols=259 Identities=38% Similarity=0.629 Sum_probs=207.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
.++|+||+|++++++.|++.+..|+.+++.|...++. +++|++|+||||||||+|++++|.+++.+++.+++.++.+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 5789999999999999999999999999999988754 457899999999999999999999999999999999998888
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
.++.++.++.+|..++...|+|+|+||+|.++..+... ......++.++++..+++... ...++++++||+|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCH
Confidence 88888899999999998899999999999987654321 122334567888888888753 366899999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001309 957 AVVR--RLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILEKE 1029 (1103)
Q Consensus 957 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~---~~l~~dvdl~~LA~~T--eGySg~DL~~L~~~Aa~~aireiie~~ 1029 (1103)
+++| ||++.+++++|+.++|.+||+.+++. ..+..++++..+|..+ +||+|+||.++|++|+..++++.+...
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 99999999999999999999999864 3455788999999875 599999999999999999998754322
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1030 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1030 ~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
.. ........|+++||+.|+++++||++.+
T Consensus 242 ~~---------------~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 242 KS---------------GNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------------CCBCHHHHHHHHTTCCCCC---
T ss_pred cc---------------cccccCCeecHHHHHHHHHHhcCCCChh
Confidence 11 0011234799999999999999998654
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=7e-31 Score=289.92 Aligned_cols=278 Identities=45% Similarity=0.761 Sum_probs=222.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+..+|++|+|++.+++.|.+.+..++.+++.|... ..+++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 346799999999999999999999999889888643 356789999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc-CCccEEEEEecCCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFD 953 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k-~~~~VlVIaTTN~p~~ 953 (1103)
.+.+..+..++.+|..+....|+||||||+|.+...+... .......+.+.++..+++.... ...+++||++||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 9999999999999999999999999999999998765431 1222345566777777765442 1356999999999999
Q ss_pred CcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 954 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 954 Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
+++++++||+..+.+++|+.++|..|++.++..... .++.++..++..+.||+++||.++|+.|+..++++.......
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~- 250 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK- 250 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence 999999999999999999999999999999987654 356778999999999999999999999999998874221110
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCC
Q 001309 1033 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1091 (1103)
Q Consensus 1033 ~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~ 1091 (1103)
. ....+...|+++||..|+++++||...+ .+..+.+|++.||..
T Consensus 251 -~------------~~~~~~~~i~~~d~~~a~~~~~~s~~~~--~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 251 -C------------LDISAMRAITEQDFHSSLKRIRRSVAPQ--SLNSYEKWSQDYGDI 294 (297)
T ss_dssp ----------------CCCCCCCCHHHHHHHTTSCCCSSCHH--HHHHHHHHC------
T ss_pred -c------------ccccccCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCe
Confidence 0 0112346799999999999999998765 466789999999964
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=296.05 Aligned_cols=277 Identities=45% Similarity=0.794 Sum_probs=221.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
...+|++|+|++.+++.|.+.+..++.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++|.++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR--APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC--CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 357899999999999999999999988888887543 566899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 955 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 955 (1103)
+.|..+..++.+|..++...|+||||||||.|+..+.. .......++.+.|+..+++.....+.+++||+|||.++.++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999866543 23334567778888888877655567899999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 956 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 956 ~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
+++++||...+.+++|+.++|.+||+.++...... .+.++..|+..++||++++|..||+.|+..+++++.....
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~---- 342 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQV---- 342 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC------
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 99999999899999999999999999999875433 5668899999999999999999999999998887421110
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCC
Q 001309 1035 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1091 (1103)
Q Consensus 1035 l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~ 1091 (1103)
......+.+.|+++||..|++.+.++...+ .+..+.+|++.||..
T Consensus 343 ----------~~~~~~~~~~i~~~d~~~al~~~~~s~~~~--~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 343 ----------KNMSASEMRNIRLSDFTESLKKIKRSVSPQ--TLEAYIRWNKDFGDT 387 (389)
T ss_dssp -----------CCSSSCCCCCCHHHHHHHHHHCCCSSCHH--HHHHHHHHHHHCC--
T ss_pred ----------hccchhhcCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCc
Confidence 001123456799999999999999988654 567789999999975
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.1e-29 Score=276.28 Aligned_cols=267 Identities=40% Similarity=0.644 Sum_probs=216.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
..+|++|+|++++++.|.+.+..++..++.|...++ .++.++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 568999999999999999999999999999988774 4568999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
.+..+..+..+|..+....|+||||||+|.+.+.+... .........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999998766432 1222334555666666666543 3579999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001309 955 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1032 (1103)
Q Consensus 955 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~ 1032 (1103)
++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||++++|..+|+.|...++++
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~-------- 241 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE-------- 241 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT--------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------
Confidence 999999 9999999999999999999999998888778889999999999999999999999998877664
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCC
Q 001309 1033 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1092 (1103)
Q Consensus 1033 ~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~ 1092 (1103)
....|+++||.+|++++.+........-..+--|...+|..+
T Consensus 242 ------------------~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 242 ------------------LRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp ------------------TCSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred ------------------ccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 123599999999999988766555555667778888777544
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=4.8e-29 Score=294.42 Aligned_cols=265 Identities=38% Similarity=0.586 Sum_probs=218.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
....+|++|+|++++++++++.+.. +..++.|...+. ++++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 4578999999999999999998875 667888877764 45588999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+.|.....++.+|..|+...|+||||||||.+...+... +......+++++++..++++.. +.+++||++||+++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999888999999999999999999999999997765421 2223345677888888887654 36799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.++++++| ||++.+.+++|+.++|.+|++.+++...+..++++..++..+.||+++||.++|++|+..+.++
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------ 239 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------ 239 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999888888889999999999999999999999998776542
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccc----chhhhHHHHhhc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTN----MNELLQWNELYG 1089 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~----~~~~v~W~digG 1089 (1103)
....|+++||..|++++.+........ ....+.|.+.|+
T Consensus 240 --------------------~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 240 --------------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 124699999999999987654322212 335578888775
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.2e-28 Score=265.10 Aligned_cols=245 Identities=39% Similarity=0.613 Sum_probs=206.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+..+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3467899999999999999988764 666777766553 45578999999999999999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+.+..+..++.+|..|....|+++||||+|.+...+... +.......+++.++..+++... +.+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8899999999999999999899999999999997655431 1223344567778888887653 36799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.++++++| ||++.+.+++|+.++|.+|++.++....+.++.++..++..+.||+++||.++|+.|+..+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998888888888999999999999999999999998876553
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
....|+++||..|++.+..
T Consensus 236 --------------------~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 --------------------NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHTT
T ss_pred --------------------CCCcccHHHHHHHHHHHhc
Confidence 1246999999999998764
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=263.43 Aligned_cols=247 Identities=35% Similarity=0.547 Sum_probs=189.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
.++|++|+|++.+++.|++.+.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 46899999999999999998765 667777776664 4558999999999999999999999999999999999998888
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc---hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~---~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
.+..+..++.+|..+....|+||||||+|.+...+.... ........+..++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976553211 011223455666666666543 357999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcc--cHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV--DLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1029 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dv--dl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~ 1029 (1103)
+++++++ ||+..+.+++|+.++|.+|++.++....+..+. .+..++..+.||++++|.++|+.|+..+.++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~---- 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG---- 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999 999999999999999999999999887655333 35789999999999999999999998876641
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 001309 1030 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1073 (1103)
Q Consensus 1030 ~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~ 1073 (1103)
...|+++||..|++++.++...
T Consensus 234 ----------------------~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 234 ----------------------HTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp -------------------------CCBCCHHHHHHHHHHHHHC
T ss_pred ----------------------CCCCCHHHHHHHHHHhccChhh
Confidence 1358899999999998766543
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=2.5e-27 Score=281.22 Aligned_cols=264 Identities=36% Similarity=0.561 Sum_probs=221.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+..+|++++|+++++..+++.+.. +..+..|...+. ..++++||+||||||||+||++||.+++.+++.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 467999999999999999998765 666777776664 455789999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
+.+.....++.+|..++...|+|+||||||.+...+... ..+......+++++..+++... +..+++|++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 888888889999999988889999999999997655421 2234445677888888887653 356899999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
||++++| ||++.+.+++|+.++|.+||+.+++...+.+++++..+|..++||+|+||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988777778889999999999999999999999998766542
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccc----hhhhHHHHhhc
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM----NELLQWNELYG 1089 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~----~~~v~W~digG 1089 (1103)
....|+++||..|++++.+........+ ...+.|.++|+
T Consensus 255 -------------------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 255 -------------------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp -------------------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred -------------------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 1246999999999999987654332222 35678888875
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=6.7e-26 Score=245.09 Aligned_cols=240 Identities=39% Similarity=0.603 Sum_probs=198.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+..+|++++|++.++..+++++.. +..+..+...++ ..+++++|+||||||||+|+++++..++.+++.+++.++..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 4467999999999999999987764 556666766664 34578999999999999999999999999999999988877
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 875 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+.+.....+..+|+.+....|+++||||||.+...+... .......++++.++..+++... ...++++++||.|+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD 165 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGG
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCch
Confidence 7777777888999999988889999999999987554321 1223445667788888887643 35689999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 001309 953 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1030 (1103)
Q Consensus 953 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~ 1030 (1103)
.+|++++| ||+..+.++.|+.++|.+|++.++....+..+.++..+|..++||+++||.++|+.|+..+.++
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~------ 239 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 239 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999999 8999999999999999999999988877778889999999999999999999999998766542
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 001309 1031 KERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1064 (1103)
Q Consensus 1031 ~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Al 1064 (1103)
....|+++||++|+
T Consensus 240 --------------------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 --------------------GRRKITMKDLEEAA 253 (254)
T ss_dssp --------------------TCSSBCHHHHHHHT
T ss_pred --------------------cCCCcCHHHHHHHh
Confidence 12469999999885
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=1.9e-28 Score=266.62 Aligned_cols=252 Identities=36% Similarity=0.560 Sum_probs=204.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 794 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 794 ~e~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..+..+|++|+|++.+++.|.+.+.. +.+++.|...+. .+++++||+||||||||++|+++|++++.+++.+++..+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34467899999999999999998764 777888877663 4557899999999999999999999999999999999988
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch---hHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 874 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~---~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
..+.+..+..++.+|..+....|+||||||+|.|...+...+. ......+++.++..+++... ...+++||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 160 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNR 160 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCC
Confidence 8888877777888999999989999999999999765421110 00112345667777776543 2356999999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 001309 951 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1028 (1103)
Q Consensus 951 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~ 1028 (1103)
++.+++++++ ||+..+.++.|+.++|.++|+.++....+..+.++..++..+.||+++||.++|+.|+..+.++
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~---- 236 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN---- 236 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS----
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999999 9999999999999999999999998877777788899999999999999999999998765442
Q ss_pred HHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 001309 1029 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1074 (1103)
Q Consensus 1029 ~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e 1074 (1103)
....|+++||..|++++.++....
T Consensus 237 ----------------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 ----------------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ----------------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred ----------------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 124699999999999988876544
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1.6e-24 Score=237.98 Aligned_cols=239 Identities=39% Similarity=0.601 Sum_probs=196.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 875 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~ 875 (1103)
+..+|++++|.++++..+.+++.. +..+..+...++. .+++++|+||||||||+|+++++..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 467999999999999999987764 4556666666543 44679999999999999999999999999999999888777
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC
Q 001309 876 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 953 (1103)
Q Consensus 876 ~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~--~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 953 (1103)
+.+.....+..+|+.+....|+++|+||||.+...+... .........++.++..+++... +..++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777788999999988889999999999886544321 1123345566777788877643 356899999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001309 954 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1031 (1103)
Q Consensus 954 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~ 1031 (1103)
+|++++| ||+..+.+++|+.++|.+||+.+++...+..+.++..+|..++||+++||.++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------- 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988877778889999999999999999999999998765542
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 001309 1032 ERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1064 (1103)
Q Consensus 1032 ~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Al 1064 (1103)
....|+++||.+|+
T Consensus 264 -------------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -------------------GRRKITMKDLEEAA 277 (278)
T ss_dssp -------------------TCCSBCHHHHHHHT
T ss_pred -------------------CCCCcCHHHHHHHh
Confidence 12469999999885
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=3.6e-26 Score=286.16 Aligned_cols=286 Identities=37% Similarity=0.602 Sum_probs=243.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 876 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~ 876 (1103)
.++|++|+|++.+++.|.+.+..|+.++++|...++ .++.++||+||||||||+||++||.+++.+++.+++.++.+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 578999999999999999999999999999988774 5668999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 877 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 877 ~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
.++.+..++.+|..+....|++|||||||.++..+... ..+...++.+.++..+++.... ..+++|++||+++.+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCH
Confidence 99999999999999999999999999999998766432 2345567788888888887643 67999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001309 957 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1034 (1103)
Q Consensus 957 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~ 1034 (1103)
++.+ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++++..+|..|+..++++..........
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~ 435 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 9998 99999999999999999999999988888888899999999999999999999999998877753221110000
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccccchhhhHHHHhhcCCCccc
Q 001309 1035 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1095 (1103)
Q Consensus 1035 l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~digG~~~~Rk 1095 (1103)
.. .........++++||..++....++...+.....+.+.|+|++|++.+|+
T Consensus 436 -~~--------~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 436 -TI--------DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp -HC--------CHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred -cc--------chhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 00 00001234688999999999999988877777888999999999998864
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.7e-24 Score=243.53 Aligned_cols=234 Identities=18% Similarity=0.231 Sum_probs=184.5
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
+.-+|||++.--+ |+.|..|.++.-..|+|++. |.+---+..+.|||.||||| ...+||||+|++.+++++.++
T Consensus 141 ~~p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~--f~~~gi~~prGvLL~GPPGT--GKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 141 KVPDSTYDMVGGL--TKQIKEIKEVIELPVKHPEL--FESLGIAQPKGVILYGPPGT--GKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCCCEEEESCSSS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCceEEeCCCCC--CHHHHHHHHHHhhCCCceEEE
Confidence 3357999999999 99999999999999999987 44322334588999999999 699999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
.+.+.+ +
T Consensus 215 ~s~l~s-------------------------------------------------------------------------k 221 (405)
T 4b4t_J 215 GAELVQ-------------------------------------------------------------------------K 221 (405)
T ss_dssp GGGGSC-------------------------------------------------------------------------S
T ss_pred hHHhhc-------------------------------------------------------------------------c
Confidence 765544 3
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|. .
T Consensus 222 ~vGe---------------------------------------------------------------------------s 226 (405)
T 4b4t_J 222 YIGE---------------------------------------------------------------------------G 226 (405)
T ss_dssp STTH---------------------------------------------------------------------------H
T ss_pred ccch---------------------------------------------------------------------------H
Confidence 3332 2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 605 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~-----------~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k 605 (1103)
...+..+|+.+.. ..|+||||||+|.++... ....+.|-..|+.+. .+|+||||||++|.
T Consensus 227 e~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~---- 299 (405)
T 4b4t_J 227 SRMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI---- 299 (405)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS----
T ss_pred HHHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh----
Confidence 2345678887777 899999999999965521 223455555666654 49999999996554
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhh
Q 001309 606 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 683 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 683 (1103)
+|+ |++| ||++++++++||..
T Consensus 300 --------------------------LDp-------------------------------AllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 300 --------------------------LDP-------------------------------ALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp --------------------------SCH-------------------------------HHHSTTSSCCEEECCCCCHH
T ss_pred --------------------------CCH-------------------------------hHcCCCcCceEEEcCCcCHH
Confidence 443 9999 99999999999999
Q ss_pred cccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhh
Q 001309 684 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 762 (1103)
Q Consensus 684 gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a 762 (1103)
+|.+|+++|++ ..++ .+++++.||..|.||+||||+.+|++|+..|+.+.. ..++..||+.+
T Consensus 323 ~R~~Il~~~~~--~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~---------------~~vt~~Df~~A 385 (405)
T 4b4t_J 323 ARAEILRIHSR--KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR---------------IHVTQEDFELA 385 (405)
T ss_dssp HHHHHHHHHHT--TSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------------SBCCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHH
Confidence 99999999964 3344 678999999999999999999999999999987421 12466788887
Q ss_pred hhhhh
Q 001309 763 QSESK 767 (1103)
Q Consensus 763 ~~eik 767 (1103)
..++.
T Consensus 386 l~~v~ 390 (405)
T 4b4t_J 386 VGKVM 390 (405)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 30
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-23 Score=243.20 Aligned_cols=234 Identities=20% Similarity=0.239 Sum_probs=184.3
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
+..+|||++.--+ |+.|..|.++.-..|+|+++ |.+.--+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~--f~~~Gi~~prGvLLyGPPGT--GKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPEL--YEEMGIKPPKGVILYGAPGT--GKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHH--HHHHTCCCCSEEEEESSTTT--THHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCCCceECCCCc--hHHHHHHHHHHHhCCCEEEEE
Confidence 5678999999999 99999999999999999987 44333345588999999999 699999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
.+.+.+ +
T Consensus 249 ~s~l~s-------------------------------------------------------------------------k 255 (437)
T 4b4t_I 249 GSELIQ-------------------------------------------------------------------------K 255 (437)
T ss_dssp SGGGCC-------------------------------------------------------------------------S
T ss_pred HHHhhh-------------------------------------------------------------------------c
Confidence 765544 3
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|. .
T Consensus 256 ~vGe---------------------------------------------------------------------------s 260 (437)
T 4b4t_I 256 YLGD---------------------------------------------------------------------------G 260 (437)
T ss_dssp SSSH---------------------------------------------------------------------------H
T ss_pred cCch---------------------------------------------------------------------------H
Confidence 3332 2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 605 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k 605 (1103)
...+..+|+.+.. ..|+||||+|+|.++.. + ......|-..++.+. ++|+||||||++|.
T Consensus 261 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~---- 333 (437)
T 4b4t_I 261 PRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET---- 333 (437)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT----
T ss_pred HHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh----
Confidence 2345678888777 89999999999996552 1 223344444555553 48999999996554
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhh
Q 001309 606 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 683 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 683 (1103)
||+ ||+| ||++++++++||..
T Consensus 334 ------------------LDp---------------------------------------ALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 334 ------------------LDP---------------------------------------ALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp ------------------CCT---------------------------------------TSSCTTTEEEEECCCCCCHH
T ss_pred ------------------cCH---------------------------------------HHhcCCceeEEEEcCCcCHH
Confidence 444 8988 99999999999999
Q ss_pred cccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhh
Q 001309 684 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 762 (1103)
Q Consensus 684 gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a 762 (1103)
+|.+|+++|+. ..++ ++++++.||..|.||+||||+.+|++|+..|+.+... .++..||..+
T Consensus 357 ~R~~Il~~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~---------------~It~eDf~~A 419 (437)
T 4b4t_I 357 TKKKILGIHTS--KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM---------------QVTAEDFKQA 419 (437)
T ss_dssp HHHHHHHHHHT--TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS---------------CBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999974 3344 6789999999999999999999999999999874221 2456788777
Q ss_pred hhhhh
Q 001309 763 QSESK 767 (1103)
Q Consensus 763 ~~eik 767 (1103)
...+.
T Consensus 420 l~rv~ 424 (437)
T 4b4t_I 420 KERVM 424 (437)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65553
No 31
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.9e-23 Score=240.93 Aligned_cols=236 Identities=17% Similarity=0.215 Sum_probs=184.2
Q ss_pred CccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001309 298 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 377 (1103)
Q Consensus 298 ~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 377 (1103)
-+.-+|||+..--+ ++.|..|.++.-..|+|++. |.+.--+..+.|||.||||| ...+||||+|++++++++.+
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~--f~~~g~~~prGvLLyGPPGT--GKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADK--FKDMGIRAPKGALMYGPPGT--GKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHH--HHHHCCCCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeeEEECcCCC--CHHHHHHHHHHHhCCCEEEE
Confidence 35678999999888 99999999999999999987 44433345689999999999 69999999999999999999
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
+.+.+.+
T Consensus 247 ~~s~l~~------------------------------------------------------------------------- 253 (434)
T 4b4t_M 247 AAPQLVQ------------------------------------------------------------------------- 253 (434)
T ss_dssp EGGGGCS-------------------------------------------------------------------------
T ss_pred ehhhhhh-------------------------------------------------------------------------
Confidence 8765544
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchh
Q 001309 458 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 537 (1103)
Q Consensus 458 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~ 537 (1103)
+|+|.
T Consensus 254 ~~vGe--------------------------------------------------------------------------- 258 (434)
T 4b4t_M 254 MYIGE--------------------------------------------------------------------------- 258 (434)
T ss_dssp SCSSH---------------------------------------------------------------------------
T ss_pred cccch---------------------------------------------------------------------------
Confidence 33332
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hh---hHHHHHHHHhcCC--CCEEEEeeccCCCCccc
Q 001309 538 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------ND---AYGALKSKLENLP--SNVVVIGSHTQLDSRKE 604 (1103)
Q Consensus 538 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~---~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~ 604 (1103)
....+..+|+.+.. ..|+||||+|+|.++..+ .+ ....|-..|+.+. ++|+||||||++|.
T Consensus 259 se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~--- 332 (434)
T 4b4t_M 259 GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV--- 332 (434)
T ss_dssp HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC---
T ss_pred HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh---
Confidence 12345677877776 899999999999966521 12 2334445555554 38999999996554
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhh
Q 001309 605 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 682 (1103)
Q Consensus 605 k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 682 (1103)
+|+ |++| ||++++++++||.
T Consensus 333 ---------------------------LD~-------------------------------AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 333 ---------------------------LDP-------------------------------ALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp ---------------------------CCT-------------------------------TTCSTTSEEEEEECCCCCH
T ss_pred ---------------------------cCH-------------------------------hHhcCCceeEEEEeCCcCH
Confidence 443 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHh
Q 001309 683 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 761 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~ 761 (1103)
.+|.+|+++|++ ...+ ++++++.||..|.||+|+||+.+|++|+..|+.+... .+...||..
T Consensus 355 ~~R~~Il~~~~~--~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~---------------~i~~~Df~~ 417 (434)
T 4b4t_M 355 DSRAQILQIHSR--KMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS---------------SVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHHHH--HSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CcCHHHHHH
Confidence 999999999975 2234 6789999999999999999999999999999874321 245677877
Q ss_pred hhhhhhh
Q 001309 762 IQSESKS 768 (1103)
Q Consensus 762 a~~eik~ 768 (1103)
+..++++
T Consensus 418 Al~~v~~ 424 (434)
T 4b4t_M 418 GISEVQA 424 (434)
T ss_dssp HHHSCSS
T ss_pred HHHHHhC
Confidence 7665544
No 32
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.1e-23 Score=238.05 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=183.2
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
+.-+|||++.--+ ++.|..|.++.-..|+|++. |.+-=-+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--f~~~g~~~prGvLL~GPPGt--GKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEI--FQRVGIKPPKGVLLYGPPGT--GKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEe
Confidence 4568999999888 99999999999999999987 33322345689999999999 699999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
.+.+.+ +
T Consensus 248 ~s~l~s-------------------------------------------------------------------------k 254 (437)
T 4b4t_L 248 ASGIVD-------------------------------------------------------------------------K 254 (437)
T ss_dssp GGGTCC-------------------------------------------------------------------------S
T ss_pred hhhhcc-------------------------------------------------------------------------c
Confidence 765544 3
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|. .
T Consensus 255 ~~Ge---------------------------------------------------------------------------s 259 (437)
T 4b4t_L 255 YIGE---------------------------------------------------------------------------S 259 (437)
T ss_dssp SSSH---------------------------------------------------------------------------H
T ss_pred cchH---------------------------------------------------------------------------H
Confidence 3332 1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 605 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k 605 (1103)
...+..+|+.+.. .+|+||||+|+|.++.. + ....+.|-..|+.+. ++|+||||||++|.
T Consensus 260 e~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~---- 332 (437)
T 4b4t_L 260 ARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT---- 332 (437)
T ss_dssp HHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS----
T ss_pred HHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh----
Confidence 2345577777766 99999999999996542 1 223444555666554 48999999996554
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhh
Q 001309 606 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 683 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 683 (1103)
||| ||+| ||++++++++||..
T Consensus 333 ------------------LDp---------------------------------------AllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 333 ------------------LDP---------------------------------------ALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp ------------------SCT---------------------------------------TTTSTTSEEEEECCCCCCHH
T ss_pred ------------------hCH---------------------------------------HHhCCCccceeeecCCcCHH
Confidence 444 8887 79999999999999
Q ss_pred cccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHhh
Q 001309 684 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 762 (1103)
Q Consensus 684 gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~a 762 (1103)
+|.+|+++|+. ...+ .+++++.||..|.||+|+||+.+|++|+..|+.+... .+...+|..+
T Consensus 356 ~R~~Il~~~~~--~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~---------------~i~~~d~~~A 418 (437)
T 4b4t_L 356 GRLEIFKIHTA--KVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD---------------HINPDDLMKA 418 (437)
T ss_dssp HHHHHHHHHHH--TSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CCCHHHHHHH
Confidence 99999999975 2233 6789999999999999999999999999999874221 2456788877
Q ss_pred hhhhhh
Q 001309 763 QSESKS 768 (1103)
Q Consensus 763 ~~eik~ 768 (1103)
..++.+
T Consensus 419 l~~v~~ 424 (437)
T 4b4t_L 419 VRKVAE 424 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766554
No 33
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.6e-22 Score=234.11 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=181.8
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 377 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 377 (1103)
+.-+|||++.--+ ++.|..|.++....|++++.. +|+ -+..+.|||.||||| ...+||||+|++++++++.+
T Consensus 202 e~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGT--GKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 202 EKPDVTYSDVGGC--KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGT--GKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp SSCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTS--SHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCC--cHHHHHHHHHhccCCCeEEE
Confidence 4457999999888 999999999999999999873 333 345689999999999 69999999999999999999
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
+.+.+.+
T Consensus 275 s~s~L~s------------------------------------------------------------------------- 281 (467)
T 4b4t_H 275 IGSELVQ------------------------------------------------------------------------- 281 (467)
T ss_dssp EGGGGCC-------------------------------------------------------------------------
T ss_pred EhHHhhc-------------------------------------------------------------------------
Confidence 8765544
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchh
Q 001309 458 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 537 (1103)
Q Consensus 458 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~ 537 (1103)
+|+|.
T Consensus 282 k~vGe--------------------------------------------------------------------------- 286 (467)
T 4b4t_H 282 KYVGE--------------------------------------------------------------------------- 286 (467)
T ss_dssp CSSSH---------------------------------------------------------------------------
T ss_pred ccCCH---------------------------------------------------------------------------
Confidence 33332
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcC--CCCEEEEeeccCCCCccc
Q 001309 538 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKE 604 (1103)
Q Consensus 538 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~-----------~~~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~ 604 (1103)
....+..+|+.+.. .+|+||||+|+|.++..+ ......+...|+.+ .++|+||||||+++.
T Consensus 287 sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~--- 360 (467)
T 4b4t_H 287 GARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT--- 360 (467)
T ss_dssp HHHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS---
T ss_pred HHHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc---
Confidence 12345577777776 899999999999965521 12333444455555 348999999996544
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhh
Q 001309 605 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 682 (1103)
Q Consensus 605 k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 682 (1103)
+|+ |++| ||++++++++||.
T Consensus 361 ---------------------------LDp-------------------------------ALlRpGRFD~~I~i~lPd~ 382 (467)
T 4b4t_H 361 ---------------------------LDP-------------------------------ALLRPGRIDRKVEFSLPDL 382 (467)
T ss_dssp ---------------------------BCH-------------------------------HHHSTTTCCEEECCCCCCH
T ss_pred ---------------------------CCh-------------------------------hhhccccccEEEEeCCcCH
Confidence 443 9999 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHh
Q 001309 683 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 761 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~ 761 (1103)
.+|.+|+++|++ ..++ .+++++.||..|.||+||||+.+|++|+..|+.+... .+...+|..
T Consensus 383 ~~R~~Ilk~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~---------------~it~~Df~~ 445 (467)
T 4b4t_H 383 EGRANIFRIHSK--SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDFLK 445 (467)
T ss_dssp HHHHHHHHHHHT--TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHH
Confidence 999999999964 3344 6789999999999999999999999999999875321 235677877
Q ss_pred hhhhhh
Q 001309 762 IQSESK 767 (1103)
Q Consensus 762 a~~eik 767 (1103)
+..++.
T Consensus 446 Al~kV~ 451 (467)
T 4b4t_H 446 AVDKVI 451 (467)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766554
No 34
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.87 E-value=5.6e-22 Score=247.00 Aligned_cols=210 Identities=16% Similarity=0.216 Sum_probs=139.1
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF 877 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~ 877 (1103)
++++|++.+++.+.+.+...... .....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~-----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG-----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT-----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 45899999999998887642110 00112343469999999999999999999998 78999999999887665
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCC----
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---- 953 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---- 953 (1103)
.. ...++...+..+++||||||||.+ ++..+..+.++++.......+-......+++||+|||.+..
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~-----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA-----HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS-----CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc-----CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 54 122334445556789999999987 22223333333332111100111112357899999997544
Q ss_pred --------CcHHHHhccccccccCCCCHHHHHHHHHHHHhhc-------cc---CCcccHHHHHHHc--CCCcHHHHHHH
Q 001309 954 --------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL---ASDVDLEGIANMA--DGYSGSDLKNL 1013 (1103)
Q Consensus 954 --------Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~-------~l---~~dvdl~~LA~~T--eGySg~DL~~L 1013 (1103)
+.+++++||+.++.+++|+.+++.+|++.++... .. .++..++.|+... ..+..++|+++
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 716 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA 716 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH
Confidence 7899999999899999999999999999988652 11 1333455565532 24566888888
Q ss_pred HHHHHhhhhHH
Q 001309 1014 CVTAAHCPIRE 1024 (1103)
Q Consensus 1014 ~~~Aa~~aire 1024 (1103)
++++...++.+
T Consensus 717 i~~~v~~~l~~ 727 (758)
T 3pxi_A 717 IQKHVEDRLSE 727 (758)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877665554
No 35
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.87 E-value=2.7e-21 Score=240.61 Aligned_cols=203 Identities=17% Similarity=0.258 Sum_probs=140.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l---~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~--- 875 (1103)
+++|++.+++.+...+... ..++ .+|..++||+||||||||++|+++|+.++.+++.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 5889999999888876531 1122 2455579999999999999999999999999999999886542
Q ss_pred --cccccHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc-------cCCcc
Q 001309 876 --WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKER 941 (1103)
Q Consensus 876 --~~G~~e~~-----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~-------k~~~~ 941 (1103)
.+|....+ ...+....++.+++||||||||.+ .+ .+++.|+..++.... .+-.+
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----~~-------~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----HP-------DVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----CH-------HHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----CH-------HHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 22221111 122344455566799999999987 21 233334433332110 01146
Q ss_pred EEEEEecCCCC-------------------------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc--------
Q 001309 942 VLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-------- 988 (1103)
Q Consensus 942 VlVIaTTN~p~-------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~-------- 988 (1103)
++||+|||... .+.+++++||+.++.|++|+.+++..|++.++.+..
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 88999999743 578899999998999999999999999999887421
Q ss_pred -c-CCcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 001309 989 -L-ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1024 (1103)
Q Consensus 989 -l-~~dvdl~~LA~~T--eGySg~DL~~L~~~Aa~~aire 1024 (1103)
+ .++..++.|+... ..+..++|.++++.+...++.+
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 1 1344456666554 2456788888888887765554
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.9e-22 Score=229.33 Aligned_cols=216 Identities=22% Similarity=0.313 Sum_probs=174.3
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
+..+|||++.--+ ++.|.-|.++....|+|+++ |.+-=-+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--~~~~g~~~prGiLL~GPPGt--GKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADL--YEQIGIDPPRGVLLYGPPGT--GKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTTT--THHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCceEEEECCCCC--CHHHHHHHHHHHhCCCeEEEe
Confidence 4567999999888 99999999999999999987 33311244678999999999 699999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
.+.+.+ +
T Consensus 239 ~~~l~~-------------------------------------------------------------------------~ 245 (428)
T 4b4t_K 239 GSEFVH-------------------------------------------------------------------------K 245 (428)
T ss_dssp GGGTCC-------------------------------------------------------------------------S
T ss_pred cchhhc-------------------------------------------------------------------------c
Confidence 765544 2
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|. .
T Consensus 246 ~~Ge---------------------------------------------------------------------------~ 250 (428)
T 4b4t_K 246 YLGE---------------------------------------------------------------------------G 250 (428)
T ss_dssp SCSH---------------------------------------------------------------------------H
T ss_pred ccch---------------------------------------------------------------------------h
Confidence 3332 1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 605 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k 605 (1103)
...+..+|+.+.. ..|+||||+|+|.++.. + .+..+.|-..|+.+. .+|+||||||++|.
T Consensus 251 e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~---- 323 (428)
T 4b4t_K 251 PRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT---- 323 (428)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS----
T ss_pred HHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh----
Confidence 2345577877766 89999999999997652 1 245666667777764 48999999996554
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhc-hhhh
Q 001309 606 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD-VETL 682 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~-Lpd~ 682 (1103)
||| |++| ||+++++++ +|+.
T Consensus 324 ------------------LD~---------------------------------------AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 324 ------------------LDP---------------------------------------ALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp ------------------CCH---------------------------------------HHHSSSSEEEEEECCSSCCH
T ss_pred ------------------cCh---------------------------------------hhhcCCcceEEEEcCCCCCH
Confidence 343 9999 999999995 9999
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 683 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
.+|..|+++|+. ..++ ++++++.||..|.||+||||+.+|++|+..|+.+
T Consensus 347 ~~R~~Il~~~~~--~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 347 RERRLIFGTIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHH--SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999975 3344 6789999999999999999999999999999874
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=3.7e-21 Score=213.81 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=131.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHH----HhcCCeEEEEccccccc
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~~~PsILfIDEID~L~ 908 (1103)
.++++++||+||||||||+||+++|++++.+|+.++++++.+.+.|..+..++.+|..| ++..|+||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 45668999999999999999999999999999999999999999999999999999999 57789999999999998
Q ss_pred cCCCCCch-hHHHHHHHHhHHhhhcCCc---------ccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHH
Q 001309 909 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 976 (1103)
Q Consensus 909 ~~r~~~~~-~~~l~~vl~~LL~~ldgl~---------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR 976 (1103)
+.+..... ......+.+.|+..+++.. .....+++||+|||.++.++++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 75432111 1122345566666666432 1134679999999999999999998 8986665 6899999
Q ss_pred HHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHH
Q 001309 977 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 977 ~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
.+|++.++... +++...++..++||++++|..+
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999888653 4568899999999999888643
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.82 E-value=2.3e-19 Score=226.30 Aligned_cols=208 Identities=17% Similarity=0.248 Sum_probs=140.7
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 875 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~-- 875 (1103)
++++|++.+++.+...+...... -....+|..++||+||||||||++|+++++.+ +.+|+.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g-----~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG-----CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 56899999999988877531100 00012344689999999999999999999998 789999999876543
Q ss_pred ---cccccHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc-------CCc
Q 001309 876 ---WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 940 (1103)
Q Consensus 876 ---~~G~~e~~-----i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k-------~~~ 940 (1103)
.+|....+ ...+....+..+++||||||||.+ + ..+.+.|+..++..... +-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----~-------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----H-------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGS-----C-------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----C-------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 22211111 122333444555689999999987 2 23444455555432110 114
Q ss_pred cEEEEEecCC--------------------------CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc------
Q 001309 941 RVLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE------ 988 (1103)
Q Consensus 941 ~VlVIaTTN~--------------------------p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~------ 988 (1103)
+++||+|||. ...+.+.++.||+.++.+.+|+.++...|++.++.+..
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6889999997 23567889999999999999999999999999887421
Q ss_pred ---c-CCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHH
Q 001309 989 ---L-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREI 1025 (1103)
Q Consensus 989 ---l-~~dvdl~~LA~~Te--GySg~DL~~L~~~Aa~~airei 1025 (1103)
+ .++..++.|+...- .+..++|.++++.+...+..+.
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 1 23445666777654 5678899999998887766654
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=2.3e-18 Score=190.39 Aligned_cols=215 Identities=16% Similarity=0.192 Sum_probs=161.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 872 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LAkAIA~el-------g~~fi~v~~s~L 872 (1103)
+|+|++.+++.|.+.+..+.. +..+.+.++ ..+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998876442 444433333 2345579999999999999999999988 348999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 873 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.+.++|.....+..+|..+ .++||||||+|.|+..+..... ...+++.|+..++. .+.++++|++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~---~~~~~~~Ll~~l~~----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDY---GQEAIEILLQVMEN----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CC---THHHHHHHHHHHHH----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccc---cHHHHHHHHHHHhc----CCCCEEEEEeCChHH
Confidence 9999998888888888877 4589999999999755432111 12334445544443 235678889887643
Q ss_pred -----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc-------CCCcHHHHHHHHHHHHh
Q 001309 953 -----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------DGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 953 -----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T-------eGySg~DL~~L~~~Aa~ 1019 (1103)
.+++++++||+..+.|+.|+.+++.+|++.++.+.... ++..+..++... ...+++++.++++.|..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999875543 444556666652 23458999999999998
Q ss_pred hhhHHHHH
Q 001309 1020 CPIREILE 1027 (1103)
Q Consensus 1020 ~aireiie 1027 (1103)
.+..+++.
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777654
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=1.6e-20 Score=220.88 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=136.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccc
Q 001309 796 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSIT 873 (1103)
Q Consensus 796 ~~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~L~ 873 (1103)
+...|++++|++++++.+.+++... . .+ ..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~-------~-~~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI-------K-SK-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------H-TT-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH-------H-hC-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3457899999999999988877531 1 12 34568999999999999999999999998 999999999999
Q ss_pred cccccccHHHHHHHHHHH---HhcCCeEEEEccccccccCCCCCch---hHHHHHHH---------------HhHHhhhc
Q 001309 874 SKWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMK---------------NEFMVNWD 932 (1103)
Q Consensus 874 s~~~G~~e~~i~~lF~~A---~~~~PsILfIDEID~L~~~r~~~~~---~~~l~~vl---------------~~LL~~ld 932 (1103)
+.+.++.+. ++.+|..| +...|+||||||+|.+++.+..... .....+++ .+++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999887 99999999 7888999999999999987754311 11111111 22333333
Q ss_pred CCcccCCccEEEEEecCCCCCCcHHHHh--cccc--ccccCCCC--HHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCc
Q 001309 933 GLRTKDKERVLVLAATNRPFDLDEAVVR--RLPR--RLMVNLPD--APNREKIIRVILAKEELASDVDLEGIANMADGYS 1006 (1103)
Q Consensus 933 gl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~--~I~l~lPd--~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGyS 1006 (1103)
......+..++|++|||.++.+++++.| ||++ .+.++.|+ .++|.+|++.+. ..+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LHDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HHHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HHHHHHHHHhCCC--
Confidence 2111223456667899999999999876 8988 56677774 477877766443 2368899999999
Q ss_pred HHHHHHHHHH
Q 001309 1007 GSDLKNLCVT 1016 (1103)
Q Consensus 1007 g~DL~~L~~~ 1016 (1103)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=1.2e-17 Score=183.83 Aligned_cols=247 Identities=20% Similarity=0.249 Sum_probs=160.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccc-
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 879 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s-~~~G~- 879 (1103)
+++|++.+++.+...+..++.+..+........++.++||+||||||||++|+++++.++.+++.++|+.+.. .+.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 5899999999999887654332221111000134578999999999999999999999999999999988765 44443
Q ss_pred cHHHHHHHHHHH-----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc------cCCccEEEEEe-
Q 001309 880 GEKYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAA- 947 (1103)
Q Consensus 880 ~e~~i~~lF~~A-----~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~------k~~~~VlVIaT- 947 (1103)
....++.++..+ ....++||||||+|.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 234566666533 112368999999999976553322222223345556655554311 12246788888
Q ss_pred ---cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHH----HHh-------hcc---cCCcccHHHHHHHcC-------
Q 001309 948 ---TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV----ILA-------KEE---LASDVDLEGIANMAD------- 1003 (1103)
Q Consensus 948 ---TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~----ll~-------~~~---l~~dvdl~~LA~~Te------- 1003 (1103)
++.+..+++++++||+..+.++.|+.+++.+|++. ++. ... ..++..++.|+..+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45778899999999998899999999999999983 221 112 123445666666652
Q ss_pred CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 001309 1004 GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1004 GySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~ 1068 (1103)
+...+.+.++++.+...+..+. . ........|+.+|+..|+....
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~------------~--------~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSA------------S--------DMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHG------------G--------GCTTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCC------------c--------cccCCEEEEeeHHHHHHHHhhh
Confidence 3566777777776654322110 0 0011223589999999987653
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=7.6e-17 Score=182.62 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=155.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 874 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~s~L~s 874 (1103)
..+|++++|.+..++.+..++.. +..+ ..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34599999999999887665532 1111 234578999999999999999999999974 888888766443
Q ss_pred ccccc-------------------------------------------------cHHHHHHHHHHHHhc---------CC
Q 001309 875 KWFGE-------------------------------------------------GEKYVKAVFSLASKI---------AP 896 (1103)
Q Consensus 875 ~~~G~-------------------------------------------------~e~~i~~lF~~A~~~---------~P 896 (1103)
.+.+. ....++..|..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 32221 123344445444321 26
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec-----------CCCCCCcHHHHhccccc
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-----------NRPFDLDEAVVRRLPRR 965 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT-----------N~p~~Ld~aLlrRF~~~ 965 (1103)
+||||||+|.|. ....+.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 899999999882 12333444444332 2345555554 3577899999999965
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 001309 966 LMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1044 (1103)
Q Consensus 966 I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~ 1044 (1103)
+.+++|+.+++.++++..+...... ++..+..++..+.+.+++++.++|+.|+..+..+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-------------------- 313 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-------------------- 313 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--------------------
Confidence 8999999999999999988875433 5566888999988668889999999887765432
Q ss_pred CCCCccccccccHHHHHHHHHHh
Q 001309 1045 PLYSSVDVRPLKMDDFKYAHEQV 1067 (1103)
Q Consensus 1045 ~~~~~~~~r~Lt~eDF~~Ale~v 1067 (1103)
....|+.+|+.+|++.+
T Consensus 314 ------~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ------KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ------TCSSBCHHHHHHHHHHS
T ss_pred ------CCCCCCHHHHHHHHHHh
Confidence 22579999999999874
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=2.7e-16 Score=176.46 Aligned_cols=199 Identities=19% Similarity=0.243 Sum_probs=142.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+|++++|.+..++.+...+...... ..+..++||+||||||||++|++++++++.+|+.++++.+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~---------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKR---------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHT---------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhc---------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 48999999999999999888642211 234568999999999999999999999999999999876531
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc--------CCcccCCccEEEEEecC
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--------GLRTKDKERVLVLAATN 949 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld--------gl~~k~~~~VlVIaTTN 949 (1103)
...+..++.. ...+++|||||||.+. ...+..+..+++.....+- .... ...++++|++||
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~-----~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~atn 162 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS-----PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI-DLPKFTLIGATT 162 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC-----HHHHHHHHHHHHTSCC---------CCCCCC-CCCCCEEEEEES
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC-----HHHHHHHHHHHHhccchhhcccCccccceec-CCCCeEEEEeCC
Confidence 2233333332 2357999999999882 2223333333332211110 0001 112589999999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 950 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 950 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
....+++++++||+..+.++.|+.+++..+++.++...... ++..+..++..+.| +.+++.++++.+...
T Consensus 163 ~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 163 RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875543 45567778886666 456777887776543
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=183.28 Aligned_cols=218 Identities=19% Similarity=0.294 Sum_probs=164.8
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc-CCeEEEE
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIV 377 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f-~a~LL~l 377 (1103)
+..+++|+++.-+ +..|..|.++.-.+++++++ |.. .....+.|||+||+|| ...+||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~iLL~GppGt--GKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPGT--GKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGG--SCT-TCCCCSEEEEESSSSS--CHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHH--HhC-CCCCCceEEEECCCCc--cHHHHHHHHHHHcCCCcEEEE
Confidence 4457899998777 99999999999889999887 332 2345678999999999 6999999999998 7777666
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCee
Q 001309 378 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 457 (1103)
Q Consensus 378 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 457 (1103)
+.+.+.+
T Consensus 78 ~~~~l~~------------------------------------------------------------------------- 84 (322)
T 1xwi_A 78 SSSDLVS------------------------------------------------------------------------- 84 (322)
T ss_dssp ECCSSCC-------------------------------------------------------------------------
T ss_pred EhHHHHh-------------------------------------------------------------------------
Confidence 6543322
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchh
Q 001309 458 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 537 (1103)
Q Consensus 458 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~ 537 (1103)
+|+|.
T Consensus 85 ~~~g~--------------------------------------------------------------------------- 89 (322)
T 1xwi_A 85 KWLGE--------------------------------------------------------------------------- 89 (322)
T ss_dssp SSCCS---------------------------------------------------------------------------
T ss_pred hhhhH---------------------------------------------------------------------------
Confidence 11110
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC---CCCEEEEeeccCCCCccccC
Q 001309 538 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKS 606 (1103)
Q Consensus 538 ~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l---~g~vvvIgs~~~~d~~k~k~ 606 (1103)
....+..+|+.+.. .+|.||||||+|.+.... .++.+.|...++.+ .++|+|||++|+
T Consensus 90 ~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~-------- 158 (322)
T 1xwi_A 90 SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI-------- 158 (322)
T ss_dssp CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC--------
T ss_pred HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC--------
Confidence 01234466666655 789999999999964421 23344455556654 468999999994
Q ss_pred CCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhccc
Q 001309 607 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 686 (1103)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~ 686 (1103)
|+.++ ++++|||++.+++++|+...|.
T Consensus 159 ----------------------~~~ld-------------------------------~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 159 ----------------------PWVLD-------------------------------SAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp ----------------------TTTSC-------------------------------HHHHHTCCEEEECCCCCHHHHH
T ss_pred ----------------------cccCC-------------------------------HHHHhhcCeEEEeCCcCHHHHH
Confidence 33333 2888899888999999999999
Q ss_pred chhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccc
Q 001309 687 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 735 (1103)
Q Consensus 687 ~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 735 (1103)
.|++.|.......+++.+++.||..|.||+|+||+.+|+.|...++++.
T Consensus 186 ~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999986544445688999999999999999999999999999988764
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.70 E-value=8.5e-17 Score=175.65 Aligned_cols=177 Identities=23% Similarity=0.296 Sum_probs=129.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccccc----HHHHHHHHHHHHhcCCeEEEEcccccccc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~----e~~i~~lF~~A~~~~PsILfIDEID~L~~ 909 (1103)
.++.++||+||||||||++|+++|+.++.+|+.+++++. ++|.. ...++.+|..+....++||||||||.|++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc
Confidence 455789999999999999999999999999999998762 33332 35678899998888899999999999976
Q ss_pred CCCCC-chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH-HHHhccccccccCCCCHHHHHHHHHHHHhhc
Q 001309 910 RRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 910 ~r~~~-~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~ 987 (1103)
.+... ..+ ..+++.+...+++... .+.+++||+|||.++.+++ .+.+||...+.+ |+..+|.+|.+.+....
T Consensus 139 ~~~~~~~~~---~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~--p~l~~r~~i~~i~~~~~ 212 (272)
T 1d2n_A 139 YVPIGPRFS---NLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQLLEALELLG 212 (272)
T ss_dssp CBTTTTBCC---HHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC--CCEEEHHHHHHHHHHHT
T ss_pred cCCCChhHH---HHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcC--CCccHHHHHHHHHHhcC
Confidence 55321 122 2344444445554432 3467899999999988887 667799766555 56556666665554443
Q ss_pred ccCCcccHHHHHHHcCCC----cHHHHHHHHHHHHhh
Q 001309 988 ELASDVDLEGIANMADGY----SGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 988 ~l~~dvdl~~LA~~TeGy----Sg~DL~~L~~~Aa~~ 1020 (1103)
. .++.++..++..+.|| ..+++.++++.|...
T Consensus 213 ~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 213 N-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp C-SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred C-CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 3 3566788999999997 567777887777653
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.66 E-value=1.8e-16 Score=180.81 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=159.6
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001309 287 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 366 (1103)
Q Consensus 287 ~~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 366 (1103)
+++.+... +..+.-.++|+++..+ +..|..|..+...+++++++. .. .....+.|||+||+|| ...+||||+
T Consensus 33 ~~~~~~~~-~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~--~~-~~~~~~~iLL~GppGt--GKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSA-ILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLF--KG-NRKPTSGILLYGPPGT--GKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGG--CS-SCCCCCCEEEECSTTS--CHHHHHHHH
T ss_pred HHHHHhhh-hcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHH--hc-CCCCCceEEEECCCCC--cHHHHHHHH
Confidence 34444433 3345668999998666 899999999998899998873 33 3345678999999999 699999999
Q ss_pred HhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCccccccc
Q 001309 367 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 446 (1103)
Q Consensus 367 A~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 446 (1103)
|++++++++.++...+.+
T Consensus 105 a~~~~~~~~~v~~~~l~~-------------------------------------------------------------- 122 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVS-------------------------------------------------------------- 122 (355)
T ss_dssp HHHHTCEEEEEEHHHHHS--------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHhh--------------------------------------------------------------
Confidence 999999888776432211
Q ss_pred CcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCccccccc
Q 001309 447 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 526 (1103)
Q Consensus 447 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 526 (1103)
+|+|.
T Consensus 123 -----------~~~g~---------------------------------------------------------------- 127 (355)
T 2qp9_X 123 -----------KWMGE---------------------------------------------------------------- 127 (355)
T ss_dssp -----------CC-------------------------------------------------------------------
T ss_pred -----------hhcch----------------------------------------------------------------
Confidence 11111
Q ss_pred ccccCCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC---CCCEEEEee
Q 001309 527 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL---PSNVVVIGS 595 (1103)
Q Consensus 527 l~~d~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~----~~~~~~l~~~L~~l---~g~vvvIgs 595 (1103)
....+..+|+.+.. ..|.||||||+|.+... . .++.+.|...|+.+ ..+|+|||+
T Consensus 128 -----------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 128 -----------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -----------CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -----------HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 01234456665554 78999999999995532 1 33445555556554 458999999
Q ss_pred ccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHH
Q 001309 596 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 675 (1103)
Q Consensus 596 ~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 675 (1103)
+|+++. ++ ++++|||++.+
T Consensus 194 tn~~~~------------------------------ld-------------------------------~al~rRf~~~i 212 (355)
T 2qp9_X 194 TNIPWQ------------------------------LD-------------------------------SAIRRRFERRI 212 (355)
T ss_dssp ESCGGG------------------------------SC-------------------------------HHHHHTCCEEE
T ss_pred cCCccc------------------------------CC-------------------------------HHHHcccCEEE
Confidence 994322 22 27888888888
Q ss_pred hhchhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccc
Q 001309 676 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 735 (1103)
Q Consensus 676 e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 735 (1103)
++++|+...|..|++.|.......+++.+++.||..+.||+|+||+.+|..|...|+.+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888889988886433334678899999999999999999999999999998764
No 47
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.66 E-value=1.7e-16 Score=178.11 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=166.4
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 299 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 299 ~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
+.-+++|+++.-+ +..|..|..+...+++++++.+ .. ....+.|||.||+|| ...+||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~--~~-~~~~~~vLl~GppGt--GKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFK--GN-RKPTSGILLYGPPGT--GKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCC--TT-CCCCCEEEEECSSSS--CHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHh--cC-CCCCCeEEEECCCCC--cHHHHHHHHHHHHCCCEEEEc
Confidence 4567899998776 9999999999988999888743 22 234678999999999 699999999999998888776
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
.+.+.+ +
T Consensus 84 ~~~l~~-------------------------------------------------------------------------~ 90 (322)
T 3eie_A 84 SSDLVS-------------------------------------------------------------------------K 90 (322)
T ss_dssp HHHHHT-------------------------------------------------------------------------T
T ss_pred hHHHhh-------------------------------------------------------------------------c
Confidence 432211 1
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|. .
T Consensus 91 ~~g~---------------------------------------------------------------------------~ 95 (322)
T 3eie_A 91 WMGE---------------------------------------------------------------------------S 95 (322)
T ss_dssp TGGG---------------------------------------------------------------------------H
T ss_pred ccch---------------------------------------------------------------------------H
Confidence 1110 1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC---CCCEEEEeeccCCCCccccCC
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKSH 607 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l---~g~vvvIgs~~~~d~~k~k~~ 607 (1103)
...+..+|+.+.. .+|.||||||+|.+... ..++.+.+...|+.+ .++|+|||++|+++
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~------- 165 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW------- 165 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG-------
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh-------
Confidence 2234566666655 78999999999996542 234455555566644 46899999999432
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccc
Q 001309 608 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 687 (1103)
Q Consensus 608 ~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~ 687 (1103)
.++ ++++|||++.+++++|+...|.+
T Consensus 166 -----------------------~ld-------------------------------~al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 166 -----------------------QLD-------------------------------SAIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp -----------------------GSC-------------------------------HHHHHHCCEEEECCCCCHHHHHH
T ss_pred -----------------------hCC-------------------------------HHHHcccCeEEEeCCCCHHHHHH
Confidence 233 28888999899999999999999
Q ss_pred hhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhcccccc
Q 001309 688 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 736 (1103)
Q Consensus 688 Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~ 736 (1103)
|++.|.......+++.+++.|+..+.||+|+||+.+|+.|...++.+..
T Consensus 192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999865433446888999999999999999999999999999988753
No 48
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=1.1e-15 Score=169.94 Aligned_cols=202 Identities=20% Similarity=0.229 Sum_probs=143.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+|++++|.+..++.+.+.+..... . ..++.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------R--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------H--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------c--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4789999999999999887753211 0 124468999999999999999999999999999999876532
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc-------CCccEEEEEecCC
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNR 950 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k-------~~~~VlVIaTTN~ 950 (1103)
...+...|..+ ...+++|||||||.+. ...+..+..+++.....+-+-... ...++++|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 12233333221 1357899999999882 222333333333322111110000 1135889999999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001309 951 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 951 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
+..+++++.+||+.++.++.|+.+++.++++.++...... ++..+..++..+.|+ ++++.++++.+...+
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFA 218 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTS
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999998765433 455678888888764 578888888886554
No 49
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.65 E-value=2.9e-16 Score=178.90 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=146.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc-cccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGE 879 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~-~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~-~~G~ 879 (1103)
.|+|++.+++.+...+.....+...... .....++.++||+||||||||++|++||+.++.+|+.++|+.+... ++|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3789999999999888543322211110 1223356789999999999999999999999999999999987643 6665
Q ss_pred c-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhHHhhhcCCcc---------c------
Q 001309 880 G-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRT---------K------ 937 (1103)
Q Consensus 880 ~-e~~i~~lF~~A----~~~~PsILfIDEID~L~~~r~~~~--~~~~l~~vl~~LL~~ldgl~~---------k------ 937 (1103)
. ...+..+|..+ ....++||||||||.+...+.+.. .......+.+.|+..+++... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 55677777766 445679999999999976654321 112223366666666663210 0
Q ss_pred --CCccEEEEEecCCC----------CC-----------------------------------CcHHHHhccccccccCC
Q 001309 938 --DKERVLVLAATNRP----------FD-----------------------------------LDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 938 --~~~~VlVIaTTN~p----------~~-----------------------------------Ld~aLlrRF~~~I~l~l 970 (1103)
...++++|++++.. .. +.+++++||+.++.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11334555555432 11 78999999999999999
Q ss_pred CCHHHHHHHHHH----HHhhc-------cc---CCcccHHHHHHH--cCCCcHHHHHHHHHHHHhhhhH
Q 001309 971 PDAPNREKIIRV----ILAKE-------EL---ASDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 971 Pd~eeR~eIL~~----ll~~~-------~l---~~dvdl~~LA~~--TeGySg~DL~~L~~~Aa~~air 1023 (1103)
|+.+++.+|+.. ++.+. .. .++..++.|+.. ...+..++|+++++++...++.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHH
Confidence 999999999886 43321 11 133345556643 2345567788877777655444
No 50
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=5.1e-16 Score=186.67 Aligned_cols=230 Identities=19% Similarity=0.245 Sum_probs=149.2
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-----
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 874 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s----- 874 (1103)
+++++|+++++..+.+.+...... ...+...+||+||||||||+||++||..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~--------~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT--------KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS--------SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc--------ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 356999999999998766532211 1224568999999999999999999999999999999876433
Q ss_pred ----ccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc-----------CC
Q 001309 875 ----KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DK 939 (1103)
Q Consensus 875 ----~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k-----------~~ 939 (1103)
.+.|.....+...|..+....| ||||||||.+...... ...+.|+..++..... +.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 3555555667777887766555 9999999999543321 1234444444432110 11
Q ss_pred ccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-----cccC------CcccHHHHHHHcC-CCcH
Q 001309 940 ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIANMAD-GYSG 1007 (1103)
Q Consensus 940 ~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~-----~~l~------~dvdl~~LA~~Te-GySg 1007 (1103)
.+++||+|||.++.+++++++|| .++.++.|+.+++.+|++.++.. ..+. ++..+..++.... ....
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 56899999999999999999999 57899999999999999987632 1211 2334455554333 2445
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 001309 1008 SDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1067 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v 1067 (1103)
++|++.+..++..+..+.+. .......|+++|+.+++..-
T Consensus 302 R~L~~~i~~~~~~aa~~~~~--------------------~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVA--------------------EERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------------------TCCSCCEECTTTTHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHh--------------------cCCcceecCHHHHHHHhCCc
Confidence 67777766665544443321 01233568889999888643
No 51
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=2.8e-14 Score=147.32 Aligned_cols=183 Identities=22% Similarity=0.247 Sum_probs=128.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 872 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L 872 (1103)
..|++++|.+..++.+.+.+.. ....++||+||||+|||++|+++++++ ...++.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 5788999999999999988752 122359999999999999999999886 466888887653
Q ss_pred ccccccccHHHHHHHHHHHH------hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 873 TSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~------~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
.. ...+...+.... ...+.||||||+|.+.. ... +.++..++. ...++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~-------~~l~~~l~~----~~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----DAQ-------AALRRTMEM----YSKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----HHH-------HHHHHHHHH----TTTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----HHH-------HHHHHHHHh----cCCCCeEEE
Confidence 32 112222222221 24578999999998831 111 222222222 124578889
Q ss_pred ecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 947 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 947 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
+||.+..+++.+.+||. .+.++.|+.++..++++.++...... ++..+..++..+.| ..+.+.++++.++
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999999996 88999999999999999988765433 45567778877766 4445555554443
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=2.6e-14 Score=161.34 Aligned_cols=202 Identities=19% Similarity=0.183 Sum_probs=138.3
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecC
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 870 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s 870 (1103)
+++++|.+...+.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 36899999999999887653211 1244689999999999999999999988 8899999987
Q ss_pred cccccc----------------ccc-cHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc
Q 001309 871 SITSKW----------------FGE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 932 (1103)
Q Consensus 871 ~L~s~~----------------~G~-~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld 932 (1103)
...+.. .+. .......++..+... .|.||||||+|.+...+ ..+ .++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~----~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQ----DLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THH----HHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCC----hHHHhHhhchh
Confidence 533211 111 223344555554433 37899999999984321 012 23344444333
Q ss_pred CCcccCCccEEEEEecCCC---CCCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhh--c-ccCCcccHHHHHHHcC--
Q 001309 933 GLRTKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK--E-ELASDVDLEGIANMAD-- 1003 (1103)
Q Consensus 933 gl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~-~I~l~lPd~eeR~eIL~~ll~~--~-~l~~dvdl~~LA~~Te-- 1003 (1103)
.... +.++.+|++||.+ +.+++.+.+||.. .+.+++|+.+++.+|++..+.. . ...++..++.++..+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3210 3568899999887 7889999999975 8999999999999999998875 1 2234556778888887
Q ss_pred -CCcHHHHHHHHHHHHhhh
Q 001309 1004 -GYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1004 -GySg~DL~~L~~~Aa~~a 1021 (1103)
|. .+.+.+++..|+..+
T Consensus 239 ~G~-~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 239 HGD-ARRALDLLRVAGEIA 256 (387)
T ss_dssp SCC-HHHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHH
Confidence 64 456677777776543
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.60 E-value=1.5e-14 Score=170.05 Aligned_cols=182 Identities=23% Similarity=0.371 Sum_probs=131.5
Q ss_pred CCcccccCcHHHH---HHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001309 798 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 874 (1103)
Q Consensus 798 ~sfddI~G~e~ik---~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s 874 (1103)
.+|++++|++.++ ..|...+.. +. ..++||+||||||||++|++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 5799999999999 677776652 21 2589999999999999999999999999999987542
Q ss_pred ccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec--
Q 001309 875 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 948 (1103)
Q Consensus 875 ~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT-- 948 (1103)
....++.+|..+.. ..+.||||||||.+.. . ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----~-------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----S-------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----H-------HHHHHHHHHhc------CceEEEecCCC
Confidence 23456666666653 3579999999998832 1 12233333332 335666655
Q ss_pred CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc-------cc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 949 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 949 N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~-------~l-~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
|....+++++++|+. ++.+..|+.+++..+++.++... .+ .++..++.|+..+.| ..+++.++++.|+..
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 555689999999994 78899999999999999998761 11 245567888888776 455667777666543
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.60 E-value=2e-14 Score=168.68 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=133.0
Q ss_pred CCCccccc-Cc--HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001309 797 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 868 (1103)
Q Consensus 797 ~~sfddI~-G~--e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~ 868 (1103)
..+|++++ |. ......+...... .+ . ..+++|+||||+|||+||+++++++ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45899976 53 3334444443331 11 1 4689999999999999999999988 88899999
Q ss_pred cCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec
Q 001309 869 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 948 (1103)
Q Consensus 869 ~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT 948 (1103)
+..+...+.+.........|.......+.||||||++.+.+.+ ..++.+..+++.+. .....+||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8876544332211111123333333368999999999984321 22333334444332 11345666665
Q ss_pred CCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001309 949 NRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 949 N~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
+.+.. +++.+++||. ..+.++.|+.++|.+|++..+....+. ++..+..|+..+.| +.+++.++++.+...+
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 65554 8899999985 689999999999999999998765432 45557889988876 6778888887776543
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=1e-14 Score=161.04 Aligned_cols=215 Identities=15% Similarity=0.215 Sum_probs=139.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~--- 875 (1103)
+++|++.+++.+...+...... -....+|..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT-----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 5789999999998877642110 00113344579999999999999999999998 567999999875432
Q ss_pred --cccccHH----H-HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEec
Q 001309 876 --WFGEGEK----Y-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 948 (1103)
Q Consensus 876 --~~G~~e~----~-i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTT 948 (1103)
++|.... . ...+.........+||||||+|.+ +...+..+..+++.............-.++++|+||
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1111000 0 012223333444589999999988 222222222222221110000000011367899999
Q ss_pred CC--------------------------CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----------cCCc
Q 001309 949 NR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----------LASD 992 (1103)
Q Consensus 949 N~--------------------------p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~----------l~~d 992 (1103)
|. ...+++++++||+..+.+.+|+.+++..|++.++.+.. ..++
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 247 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTE 247 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECH
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCH
Confidence 98 44688899999999999999999999999999876521 1234
Q ss_pred ccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHH
Q 001309 993 VDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREIL 1026 (1103)
Q Consensus 993 vdl~~LA~~Te--GySg~DL~~L~~~Aa~~aireii 1026 (1103)
..++.|+...- .++.++|.++++.+...+..+.+
T Consensus 248 ~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 248 AAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 45667777654 56788999999998887666543
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.59 E-value=6.3e-14 Score=147.63 Aligned_cols=205 Identities=17% Similarity=0.134 Sum_probs=137.3
Q ss_pred CCCcccccC---cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 797 GVTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 797 ~~sfddI~G---~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
..+|+++++ ...+.+.+...+.. .+..++||+||||||||++|+++++++ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357888776 34666666665541 134689999999999999999999887 4788999988
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccE-EEEEecC
Q 001309 871 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV-LVLAATN 949 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~V-lVIaTTN 949 (1103)
++....... +. ....+.+|||||++.+.... ..+..+..+++.+.. ...+ +|++++.
T Consensus 90 ~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~~---------~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LE--GLEQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVAE---------QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHHH---------HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HH--hccCCCEEEEeccccccCCH---HHHHHHHHHHHHHHH---------cCCCeEEEEcCC
Confidence 765442111 11 11347899999999883211 113333333333221 1223 4444444
Q ss_pred CCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 001309 950 RPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 950 ~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~air 1023 (1103)
.+. .+++.+.+||. ..+.++.|+.+++.++++.++...... ++..++.++..+.| +.+++.++++.+...+..
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 443 45688999985 789999999999999999998765433 45567788888866 677888888777654422
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHH
Q 001309 1024 EILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 1065 (1103)
Q Consensus 1024 eiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale 1065 (1103)
+ .+.|+.+|++++++
T Consensus 227 ~---------------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 H---------------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp H---------------------------TCCCCHHHHHHHHT
T ss_pred h---------------------------CCCCcHHHHHHHhh
Confidence 1 14589999988874
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=4.3e-14 Score=147.36 Aligned_cols=184 Identities=24% Similarity=0.275 Sum_probs=131.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 863 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~-------------- 863 (1103)
..|++++|.+..++.|.+.+.. ...+..++|+||+|+|||++++++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4688999999999999887752 1233579999999999999999999887432
Q ss_pred ----------EEEEecCccccccccccHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHh
Q 001309 864 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 929 (1103)
Q Consensus 864 ----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~ 929 (1103)
++.++... ......+..++..+. ...+.+|||||+|.+. . ...+.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~----~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------R----HSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------H----HHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------H----HHHHHHHH
Confidence 22222211 112234555555443 2347899999999872 1 12233344
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 001309 930 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1008 (1103)
Q Consensus 930 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~ 1008 (1103)
.++.. +.++.+|++|+.+..+++.+.+|+ ..+.++.|+.++..++++.++...... ++..+..++..+.| .++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44332 356888999998889999999997 688999999999999999998765432 45567889999977 677
Q ss_pred HHHHHHHHHH
Q 001309 1009 DLKNLCVTAA 1018 (1103)
Q Consensus 1009 DL~~L~~~Aa 1018 (1103)
.+.++++.|.
T Consensus 223 ~~~~~~~~~~ 232 (250)
T 1njg_A 223 DALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877664
No 58
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.59 E-value=1.8e-15 Score=152.76 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=113.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 4688999999999988887642 234689999999999999999999986 7889999
Q ss_pred ecCccc--cccccccHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 868 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 868 ~~s~L~--s~~~G~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
++..+. ..+.+.....+..++..+.+ ..+.||||||+|.+...+....... ...++..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEE
Confidence 987765 23445556677777776644 4578999999999964432111111 111222222 1 145778
Q ss_pred EEecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHH
Q 001309 945 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKII 980 (1103)
Q Consensus 945 IaTTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 980 (1103)
|++||.+. .+++++++||. .+.++.|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 6899999999998875
No 59
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.59 E-value=2.6e-14 Score=167.19 Aligned_cols=180 Identities=24% Similarity=0.371 Sum_probs=132.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccc-
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 879 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s-~~~G~- 879 (1103)
+|+|++++++.|...+..+++++.++...+...+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999999887777766654433345689999999999999999999999999999999988877 47874
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 001309 880 GEKYVKAVFSLAS------------------------------------------------------------------- 892 (1103)
Q Consensus 880 ~e~~i~~lF~~A~------------------------------------------------------------------- 892 (1103)
.+..++.+|..|.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 5666666665441
Q ss_pred -----------------------------------------------------------------------hc-CCeEEE
Q 001309 893 -----------------------------------------------------------------------KI-APSVVF 900 (1103)
Q Consensus 893 -----------------------------------------------------------------------~~-~PsILf 900 (1103)
+. ..+|+|
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 01 235899
Q ss_pred EccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc------CCccEEEEEec----CCCCCCcHHHHhccccccccCC
Q 001309 901 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 970 (1103)
Q Consensus 901 IDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~l 970 (1103)
+||||.+.....+....-...-+.+.|+..+++.... +..+|++|+|. +.+.++-|.++.||+.++.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 9999999754332221212223556677777763221 23678999987 3445566899999998899999
Q ss_pred CCHHHHHHHHH
Q 001309 971 PDAPNREKIIR 981 (1103)
Q Consensus 971 Pd~eeR~eIL~ 981 (1103)
++.++..+|+.
T Consensus 336 lt~~e~~~Il~ 346 (444)
T 1g41_A 336 LSAADFERILT 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999983
No 60
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.59 E-value=1.1e-15 Score=179.43 Aligned_cols=229 Identities=19% Similarity=0.287 Sum_probs=157.6
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001309 287 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 366 (1103)
Q Consensus 287 ~~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 366 (1103)
+.+.+.+.|+ .+...++|+++.-+ +..|..|..+.-.+++++++ |.. .....+.|||.||+|| ...+||||+
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~vLL~GppGt--GKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPGT--GKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTT--TSG-GGCCCSEEEEECSTTS--SHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHH--hhc-cCCCCceEEEECCCCC--CHHHHHHHH
Confidence 3344444443 45668999998766 89999999998888988877 322 2234578999999999 699999999
Q ss_pred Hhhc-CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccc
Q 001309 367 AKHF-SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 445 (1103)
Q Consensus 367 A~~f-~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 445 (1103)
|+++ +++++.++.+.+.+
T Consensus 188 a~~~~~~~~~~v~~~~l~~------------------------------------------------------------- 206 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVS------------------------------------------------------------- 206 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHh-------------------------------------------------------------
Confidence 9998 77777766543322
Q ss_pred cCcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccc
Q 001309 446 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 525 (1103)
Q Consensus 446 ~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~ 525 (1103)
+|+|...
T Consensus 207 ------------~~~g~~~------------------------------------------------------------- 213 (444)
T 2zan_A 207 ------------KWLGESE------------------------------------------------------------- 213 (444)
T ss_dssp -----------------CC-------------------------------------------------------------
T ss_pred ------------hhcchHH-------------------------------------------------------------
Confidence 1222100
Q ss_pred cccccCCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC---CCCEEEEe
Q 001309 526 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL---PSNVVVIG 594 (1103)
Q Consensus 526 ~l~~d~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~----~----~~~~~~l~~~L~~l---~g~vvvIg 594 (1103)
..+..+|+.+.. .+|.||||||+|.+... . .++.+.|...|+.+ .++|+|||
T Consensus 214 --------------~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 214 --------------KLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp --------------CTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred --------------HHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 012355655544 78999999999996442 1 22333333334433 45899999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHH
Q 001309 595 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 674 (1103)
Q Consensus 595 s~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 674 (1103)
++|+++ .++ ++++|||++.
T Consensus 277 atn~~~------------------------------~ld-------------------------------~al~rRf~~~ 295 (444)
T 2zan_A 277 ATNIPW------------------------------VLD-------------------------------SAIRRRFEKR 295 (444)
T ss_dssp EESCGG------------------------------GSC-------------------------------HHHHTTCCEE
T ss_pred cCCCcc------------------------------ccC-------------------------------HHHHhhcceE
Confidence 999422 222 2788888888
Q ss_pred HhhchhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccc
Q 001309 675 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 735 (1103)
Q Consensus 675 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 735 (1103)
+++++|+...|..|++.|.......+++.+++.||..+.||+|+||+.+|+.|+..++.+.
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888885433334578899999999999999999999999999888764
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=1.1e-14 Score=181.45 Aligned_cols=197 Identities=19% Similarity=0.303 Sum_probs=142.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|++++..+ +..++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 3688999999999988886642 234689999999999999999999987 6678888
Q ss_pred ecCccc--cccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 868 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 868 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
++..+. ..+.|..+..++.+|..+....++||||||+|.+++.............++.. .+ ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~---~l------~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP---LL------SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS---CS------SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHH---HH------hCCCeEEE
Confidence 887765 35678888899999999988888999999999998765432222222222221 11 12567888
Q ss_pred EecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc----cc-CCcccHHHHHHHcCCC-----cHHHH
Q 001309 946 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGY-----SGSDL 1010 (1103)
Q Consensus 946 aTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~----~l-~~dvdl~~LA~~TeGy-----Sg~DL 1010 (1103)
++|+.+ ..+++++.+||. .+.++.|+.++|.+|++.+.... .+ ..+..+..++..+.+| .+..+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 888864 367889999996 79999999999999999887652 22 2344566666666544 44566
Q ss_pred HHHHHHHH
Q 001309 1011 KNLCVTAA 1018 (1103)
Q Consensus 1011 ~~L~~~Aa 1018 (1103)
..++.+|+
T Consensus 399 i~lld~a~ 406 (758)
T 1r6b_X 399 IDVIDEAG 406 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666664
No 62
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=164.83 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=74.3
Q ss_pred hhHHH--HHHHHHhhchhhhhcccchhHHHHHhh-hCCC-CccchhhhhhccC--CCCHHHHHHHHhhhhhhccccccCC
Q 001309 665 EALLS--DWKQQLERDVETLKGQSNIISIRSVLS-RNGL-DCVDLESLCIKDQ--TLTTEGVEKIVGWALSHHFMHCSEA 738 (1103)
Q Consensus 665 eALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~-~~~l-~~~~L~~La~~tk--g~sgadI~~Lv~~A~s~al~r~~~~ 738 (1103)
+|++| ||++++++++|+...|.+|+++|+.-. ...+ .+++++.||..+. ||+|+||+.+|++|+..|+++....
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 39988 999999999999999999999997532 2233 6889999999865 9999999999999999999865432
Q ss_pred CCCCCccccccCchhhhHHHHHhhhhhhhh
Q 001309 739 PGKDAKLKISTESIMYGLNILQGIQSESKS 768 (1103)
Q Consensus 739 i~~~~kl~id~~sI~v~~~df~~a~~eik~ 768 (1103)
... ......+.+...+|+.++..++|
T Consensus 241 ~~~----~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 241 QKS----GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp -------------CCBCHHHHHHHHTTCCC
T ss_pred ccc----cccccCCeecHHHHHHHHHHhcC
Confidence 110 11223345778888888777665
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=2.5e-14 Score=160.49 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=101.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 863 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------~------ 863 (1103)
..+|++++|.+.+++.+...+.. ....++||+||||||||++|+++++.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46899999999987765443321 11236999999999999999999998862 2
Q ss_pred --------------------EEEEecCccccccccccHHHHHHHHHHH---------HhcCCeEEEEccccccccCCCCC
Q 001309 864 --------------------FINISMSSITSKWFGEGEKYVKAVFSLA---------SKIAPSVVFVDEVDSMLGRRENP 914 (1103)
Q Consensus 864 --------------------fi~v~~s~L~s~~~G~~e~~i~~lF~~A---------~~~~PsILfIDEID~L~~~r~~~ 914 (1103)
++.+.........+|... +...+..+ ....++||||||||.+ +.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-----~~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL-----ED 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-----CH
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC-----CH
Confidence 111111110111111100 11122222 1113689999999988 22
Q ss_pred chhHHHHHHHHhHH--hhhcCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCC-CHHHHHHHHHHHH
Q 001309 915 GEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 984 (1103)
Q Consensus 915 ~~~~~l~~vl~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lP-d~eeR~eIL~~ll 984 (1103)
..+..+..+++.-. ....+.....+.++++|+|||+.. .+++++++||+..+.++.| +.++|.+|++..+
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 23333333333311 111121111234799999999754 8999999999888999998 6777888887753
No 64
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=2.8e-14 Score=159.28 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=130.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+|++++|++.+++.|.+.+.. ...++.+|++||||||||++|++++++++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 5799999999999999988762 23445688999999999999999999999999999987632
Q ss_pred cccHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 878 GEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
...++..+..+... .+.||||||+|.+.+ ...+..+.++++.. ..++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~~~L~~~le~~-----------~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQRHLRSFMEAY-----------SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHHHHHHHHHHHH-----------GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHHHHHHHHHHhC-----------CCCcEEEEEeCCcc
Confidence 33445544443332 468999999999831 11222232222221 24578899999999
Q ss_pred CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-------cccC-Cc-ccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 953 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EELA-SD-VDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 953 ~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~-------~~l~-~d-vdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
.+++++++|| .++.++.|+.++|.+|++.++.. ..+. ++ ..++.++..+.|.... +.+.++.++
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHHG
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHHh
Confidence 9999999999 57999999999987776655432 2222 34 5678888888776554 444444443
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=9.2e-14 Score=155.40 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=133.0
Q ss_pred CCCccccc-C--cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 797 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 797 ~~sfddI~-G--~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
..+|++++ | .......+...+..+ .....+++|+||||||||+||+++++++ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45788876 4 444455555554421 1134679999999999999999999998 8999999998
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 871 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
++...+.+.........|..... .+.||||||++.+...+ ..++.+..+++.+.. ....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~~---------~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLYL---------LEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHHH---------TTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHHH---------CCCeEEEEecCC
Confidence 76554433222222223333332 47899999999984211 223333334433321 134567777777
Q ss_pred CC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001309 951 PF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 951 p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~ 1020 (1103)
+. .+++.+.+||. ..+.+++ +.++|.+|++..+....+. ++..++.|+..+ | ..+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68999999996 5688888 9999999999998765443 455688899998 5 567888888777654
No 66
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=1.1e-14 Score=163.19 Aligned_cols=164 Identities=21% Similarity=0.204 Sum_probs=111.8
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-cc-cccc
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-IT-SKWF 877 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~-L~-s~~~ 877 (1103)
+++++|++.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.. +. ....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 45789999999888776541 147999999999999999999999999999998742 10 1111
Q ss_pred cccH-HHHHHHHHHHHhcC---CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC-
Q 001309 878 GEGE-KYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF- 952 (1103)
Q Consensus 878 G~~e-~~i~~lF~~A~~~~---PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~- 952 (1103)
|... ......| ..... .+||||||++.+ +...+..+..++++....+.+.....+.+++||+|+|+.+
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~-----~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRS-----PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccC-----CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 1000 0000000 00111 279999999987 3333444445555443333443333346788999998653
Q ss_pred ----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001309 953 ----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 953 ----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
.+++++++||...+.++.|+.++|.+|++..+..
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3899999999878999999999999999998765
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=6.4e-14 Score=158.93 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=134.6
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEec
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 869 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----------g~~fi~v~~ 869 (1103)
++++|.++.++.+.+.+...+. ...+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 5799999999999887754222 1234689999999999999999999987 899999998
Q ss_pred Cccc-cc----------c-------ccc-cHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh
Q 001309 870 SSIT-SK----------W-------FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 870 s~L~-s~----------~-------~G~-~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ 930 (1103)
.... +. . .+. ....+..++..+....+ ||||||+|.+..... +.. ++..++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhcC
Confidence 6543 10 0 111 12334555555544444 999999999853221 111 12333222
Q ss_pred hcCCcccCCccEEEEEecCCC---CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHHHcC-
Q 001309 931 WDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD- 1003 (1103)
Q Consensus 931 ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~---~~l~~dvdl~~LA~~Te- 1003 (1103)
. .++.+|++||.+ +.+++.+.+||...+.+++|+.++..+|++..+.. ....++..++.++..+.
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 468899999876 68899999999889999999999999999998864 12234555778888887
Q ss_pred --CCcHHHHHHHHHHHHhh
Q 001309 1004 --GYSGSDLKNLCVTAAHC 1020 (1103)
Q Consensus 1004 --GySg~DL~~L~~~Aa~~ 1020 (1103)
| ..+.+.++|+.|+..
T Consensus 234 ~~G-~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQL 251 (384)
T ss_dssp TCC-CHHHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHH
Confidence 4 344566677776543
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.55 E-value=1.6e-14 Score=170.61 Aligned_cols=182 Identities=20% Similarity=0.308 Sum_probs=129.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4688999999999998887752 233589999999999999999999997 7889999
Q ss_pred ecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEe
Q 001309 868 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 868 ~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaT 947 (1103)
++. ..+.|..+..++.+|..+....+.||||| . . .. ..+.|+..+. ...+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~-----~---~~----a~~~L~~~L~------~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----A---ID----ASNILKPSLA------RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C--------------------CCCTT------SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C-----c---hh----HHHHHHHhhc------CCCEEEEec
Confidence 887 56677777788999999998889999999 0 1 11 1122222221 256899999
Q ss_pred cCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc----cc-CCcccHHHHHHHcCCCcH-----HHHHH
Q 001309 948 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSG-----SDLKN 1012 (1103)
Q Consensus 948 TN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~----~l-~~dvdl~~LA~~TeGySg-----~DL~~ 1012 (1103)
||... .+++++.+||. .+.|+.|+.+++.+|++.++... .+ .++..+..++..+.+|.. .....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99886 68999999996 59999999999999999887662 22 245557777777765543 35666
Q ss_pred HHHHHHh
Q 001309 1013 LCVTAAH 1019 (1103)
Q Consensus 1013 L~~~Aa~ 1019 (1103)
++..|+.
T Consensus 377 ll~~a~~ 383 (468)
T 3pxg_A 377 LIDEAGS 383 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 69
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.53 E-value=9.2e-14 Score=153.03 Aligned_cols=258 Identities=17% Similarity=0.220 Sum_probs=171.4
Q ss_pred HHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHH
Q 001309 288 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 367 (1103)
Q Consensus 288 ~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA 367 (1103)
.+.+.+.+++ +.-.++|+++--+ +..+..|..+...++++++.. . .+....+.|||.||+|| ...+||||+|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~--~-~~~~~~~~vll~Gp~Gt--GKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELF--T-GLRAPAKGLLLFGPPGN--GKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGS--C-GGGCCCSEEEEESSSSS--CHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHH--h-cCCCCCCeEEEECcCCC--CHHHHHHHHH
Confidence 3444555554 3467899997665 999999999988888877762 2 33455789999999999 6999999999
Q ss_pred hhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccC
Q 001309 368 KHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSK 447 (1103)
Q Consensus 368 ~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 447 (1103)
++++.+++-++.+.+.+
T Consensus 76 ~~~~~~~~~i~~~~l~~--------------------------------------------------------------- 92 (297)
T 3b9p_A 76 TECSATFLNISAASLTS--------------------------------------------------------------- 92 (297)
T ss_dssp HHTTCEEEEEESTTTSS---------------------------------------------------------------
T ss_pred HHhCCCeEEeeHHHHhh---------------------------------------------------------------
Confidence 99988777665433222
Q ss_pred cccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccc
Q 001309 448 NYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSL 527 (1103)
Q Consensus 448 ~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l 527 (1103)
+|+|.
T Consensus 93 ----------~~~~~----------------------------------------------------------------- 97 (297)
T 3b9p_A 93 ----------KYVGD----------------------------------------------------------------- 97 (297)
T ss_dssp ----------SSCSC-----------------------------------------------------------------
T ss_pred ----------cccch-----------------------------------------------------------------
Confidence 00000
Q ss_pred cccCCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEe
Q 001309 528 RLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIG 594 (1103)
Q Consensus 528 ~~d~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~~~~~~~l~~~L~~l~-----g~vvvIg 594 (1103)
..-.+..+|+.+.. .+|.||||||++.++.. ..+..+.|...++.++ .+++||+
T Consensus 98 ----------~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 98 ----------GEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp ----------HHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEE
T ss_pred ----------HHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEe
Confidence 01123355555544 78999999999996553 2344445566666664 4699999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHH
Q 001309 595 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 674 (1103)
Q Consensus 595 s~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 674 (1103)
++|+++ .++ ++++|||...
T Consensus 165 ~tn~~~------------------------------~l~-------------------------------~~l~~R~~~~ 183 (297)
T 3b9p_A 165 ATNRPQ------------------------------ELD-------------------------------EAALRRFTKR 183 (297)
T ss_dssp EESCGG------------------------------GBC-------------------------------HHHHHHCCEE
T ss_pred ecCChh------------------------------hCC-------------------------------HHHHhhCCeE
Confidence 999422 222 2666677666
Q ss_pred HhhchhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhh
Q 001309 675 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMY 754 (1103)
Q Consensus 675 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v 754 (1103)
+++++|+...|..|++.+.......+++.+++.|+..+.||++++|+.+|+.|...++.+......+. + .....-.+
T Consensus 184 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~--~-~~~~~~~i 260 (297)
T 3b9p_A 184 VYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC--L-DISAMRAI 260 (297)
T ss_dssp EECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----------CCCCCCC
T ss_pred EEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc--c-cccccCCc
Confidence 77777777777777766654333456778899999999999999999999999999887654321111 1 11112235
Q ss_pred hHHHHHhhhhhhhh
Q 001309 755 GLNILQGIQSESKS 768 (1103)
Q Consensus 755 ~~~df~~a~~eik~ 768 (1103)
...+|..+...+++
T Consensus 261 ~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 261 TEQDFHSSLKRIRR 274 (297)
T ss_dssp CHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHcCC
Confidence 66777776655543
No 70
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.52 E-value=1.5e-14 Score=171.72 Aligned_cols=270 Identities=18% Similarity=0.262 Sum_probs=169.8
Q ss_pred cccccccccccchhHHHHHHHhhhhhcccccccc-ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001309 302 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 380 (1103)
Q Consensus 302 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k-~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 380 (1103)
.++|+++.-. +..+..|.+.....+++++..+ ++ .+..+.|||+||+|| ..++||||+|++.+++++.++..
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGt--GKT~lAraia~~~~~~fv~vn~~ 272 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCEEEEECSTTS--SHHHHHHHHHHHCSSEEEEEEHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCcEEEECcCCC--CHHHHHHHHHHHhCCCEEEEEch
Confidence 3678876655 7778888888877788876532 22 234567999999999 69999999999999988887743
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeeeee
Q 001309 381 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 460 (1103)
Q Consensus 381 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 460 (1103)
.+.+ +|+
T Consensus 273 ~l~~-------------------------------------------------------------------------~~~ 279 (489)
T 3hu3_A 273 EIMS-------------------------------------------------------------------------KLA 279 (489)
T ss_dssp HHHT-------------------------------------------------------------------------SCT
T ss_pred Hhhh-------------------------------------------------------------------------hhc
Confidence 2221 011
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhhHH
Q 001309 461 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 540 (1103)
Q Consensus 461 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~k~ 540 (1103)
|. ..-
T Consensus 280 g~---------------------------------------------------------------------------~~~ 284 (489)
T 3hu3_A 280 GE---------------------------------------------------------------------------SES 284 (489)
T ss_dssp TH---------------------------------------------------------------------------HHH
T ss_pred ch---------------------------------------------------------------------------hHH
Confidence 10 011
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC----h----hhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCCC
Q 001309 541 AINELFEVALNESKSSPLIVFVKDIEKSLTGN----N----DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 610 (1103)
Q Consensus 541 ~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~----~----~~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~k~~~~~ 610 (1103)
.+..+|+-+.. ..|.||||||+|.+.... . ++.+.|...|+.+ ..+|+||++||+++.
T Consensus 285 ~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~--------- 352 (489)
T 3hu3_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------- 352 (489)
T ss_dssp HHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG---------
T ss_pred HHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc---------
Confidence 12344554444 789999999999965532 1 3445555556654 458999999995322
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccch
Q 001309 611 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 688 (1103)
Q Consensus 611 ~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 688 (1103)
+|+ +++| ||++.+++++|+...|.+|
T Consensus 353 -------------Ld~---------------------------------------al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 353 -------------IDP---------------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp -------------BCG---------------------------------------GGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred -------------cCH---------------------------------------HHhCCCcCceEEEeCCCCHHHHHHH
Confidence 222 5555 7777788888888888888
Q ss_pred hHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCC-Ccc-ccccCchhhhHHHHHhhhhh
Q 001309 689 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKL-KISTESIMYGLNILQGIQSE 765 (1103)
Q Consensus 689 l~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl-~id~~sI~v~~~df~~a~~e 765 (1103)
+++|+. ..++ .+.+++.++..+.||++++|+.||..|+..++.+..+.+... ... ......+.+...+|+.++.+
T Consensus 381 L~~~~~--~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHHHTT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTS
T ss_pred HHHHHh--cCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHh
Confidence 888853 3333 667899999999999999999999999999998766543221 111 11123445677888888776
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHH
Q 001309 766 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENV 809 (1103)
Q Consensus 766 ik~~~~sik~~v~~~e~~k~ll~~iip~~e~~~sfddI~G~e~i 809 (1103)
+.+... .+. . ..-+.++|+||+|....
T Consensus 459 ~~ps~~--re~-------------~--~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 459 SNPSAL--RET-------------V--VEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHHHHH--HGG-------------G--C----------------
T ss_pred CCchhh--hcc-------------c--ccCCCCCHHHcCCCccc
Confidence 665311 111 1 11236899999998643
No 71
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.52 E-value=6.2e-14 Score=160.28 Aligned_cols=222 Identities=19% Similarity=0.262 Sum_probs=131.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~----------------~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
.++|++.+++.|...+..++.+..... ..+...+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999988754333322100 0112345578999999999999999999999999999
Q ss_pred EEecCccc-ccccccc-HHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCch--hHHHHHHHHhHHhhhcCCc--
Q 001309 866 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLR-- 935 (1103)
Q Consensus 866 ~v~~s~L~-s~~~G~~-e~~i~~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~--~~~l~~vl~~LL~~ldgl~-- 935 (1103)
.++|..+. ..++|.. +..+..++..+. ...++||||||+|.+...+..... ......+.+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444543 445566665432 346799999999999654322110 0000113444555554321
Q ss_pred --c-------------cCCccEEEEEecCC-----------------------------------------CCCCcHHHH
Q 001309 936 --T-------------KDKERVLVLAATNR-----------------------------------------PFDLDEAVV 959 (1103)
Q Consensus 936 --~-------------k~~~~VlVIaTTN~-----------------------------------------p~~Ld~aLl 959 (1103)
. -...++++|+++|. ...+.+.++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 00144677777762 113668889
Q ss_pred hccccccccCCCCHHHHHHHHHH----HHhh-------c--cc-CCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhH
Q 001309 960 RRLPRRLMVNLPDAPNREKIIRV----ILAK-------E--EL-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIR 1023 (1103)
Q Consensus 960 rRF~~~I~l~lPd~eeR~eIL~~----ll~~-------~--~l-~~dvdl~~LA~~Te--GySg~DL~~L~~~Aa~~air 1023 (1103)
+||+.++.++.++.++..+|+.. ++.+ . .+ .++..+..|+.... ....+.|.++++.+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99988899999999998888862 2221 0 11 13334555555532 24456677766666554433
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=2.3e-14 Score=144.72 Aligned_cols=150 Identities=21% Similarity=0.411 Sum_probs=107.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3688999999988888876642 234689999999999999999999987 7888888
Q ss_pred ecCcccc--ccccccHHHHHHHHHHHHhc-CCeEEEEccccccccCCC-CCchhHHHHHHHHhHHhhhcCCcccCCccEE
Q 001309 868 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 943 (1103)
Q Consensus 868 ~~s~L~s--~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~-~~~~~~~l~~vl~~LL~~ldgl~~k~~~~Vl 943 (1103)
++..+.. .+.+.....+..++..+... .|.||||||+|.+.+.+. ....... ...+..++ + ..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~-~~~l~~~~---~------~~~~~ 154 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDA-GNILKPML---A------RGELR 154 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCT-HHHHHHHH---H------TTCSC
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHH-HHHHHHHH---h------cCCee
Confidence 8876542 23444555677777777665 678999999999974433 1111111 11222222 1 14578
Q ss_pred EEEecCCCC-----CCcHHHHhccccccccCCCC
Q 001309 944 VLAATNRPF-----DLDEAVVRRLPRRLMVNLPD 972 (1103)
Q Consensus 944 VIaTTN~p~-----~Ld~aLlrRF~~~I~l~lPd 972 (1103)
+|++||.+. .+++++++||. .+.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 888888764 68999999997 58888885
No 73
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.51 E-value=4.1e-15 Score=165.54 Aligned_cols=216 Identities=19% Similarity=0.278 Sum_probs=152.4
Q ss_pred cccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 300 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 300 ~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
.-.++|+++--+ +.+|..|.++.-..+++++.. +++ -...+.|||.||+|| ...+||||||+..+++++.++
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~Gt--GKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGC--GKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSSS--SHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCCc--CHHHHHHHHHHHhCCCEEEEE
Confidence 456899997665 999999999988788887652 332 234568999999999 699999999999998888776
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCcccccCCCeee
Q 001309 379 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 458 (1103)
Q Consensus 379 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 458 (1103)
...+.+ +
T Consensus 82 ~~~l~~-------------------------------------------------------------------------~ 88 (301)
T 3cf0_A 82 GPELLT-------------------------------------------------------------------------M 88 (301)
T ss_dssp HHHHHH-------------------------------------------------------------------------H
T ss_pred hHHHHh-------------------------------------------------------------------------h
Confidence 422110 1
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCcccccccccccCCCCchhh
Q 001309 459 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 538 (1103)
Q Consensus 459 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d~~~~~~~~ 538 (1103)
|+|.. .
T Consensus 89 ~~g~~----------------------------~---------------------------------------------- 94 (301)
T 3cf0_A 89 WFGES----------------------------E---------------------------------------------- 94 (301)
T ss_dssp HHTTC----------------------------T----------------------------------------------
T ss_pred hcCch----------------------------H----------------------------------------------
Confidence 11210 0
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 001309 539 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 605 (1103)
Q Consensus 539 k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~-----------~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k 605 (1103)
..+..+|+.+.. ..|.||||||+|.+... ..+..+.|...|+.+. .+|+|||+||+++.
T Consensus 95 -~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~---- 166 (301)
T 3cf0_A 95 -ANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI---- 166 (301)
T ss_dssp -THHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG----
T ss_pred -HHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc----
Confidence 012345555544 78999999999996531 1334566666777663 48999999995332
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhh
Q 001309 606 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 683 (1103)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 683 (1103)
+|+ +++| ||++.+++++|+..
T Consensus 167 ------------------ld~---------------------------------------al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 167 ------------------IDP---------------------------------------AILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp ------------------SCG---------------------------------------GGGSTTSSCEEEECCCCCHH
T ss_pred ------------------cCh---------------------------------------HHhcCCccceEEecCCcCHH
Confidence 222 5555 66666777777777
Q ss_pred cccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccccc
Q 001309 684 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 736 (1103)
Q Consensus 684 gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~ 736 (1103)
.|..|++.+.. ..++ .+++++.|+..+.||+|+||+.+|..|...|+.+..
T Consensus 190 ~r~~il~~~l~--~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 190 SRVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp HHHHHHHHHHT--TSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777766643 3333 577899999999999999999999999999987643
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=1e-12 Score=148.81 Aligned_cols=199 Identities=15% Similarity=0.087 Sum_probs=136.0
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccc
Q 001309 800 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 873 (1103)
Q Consensus 800 fddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~--gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~ 873 (1103)
+++++|.+...+.+.+.+...+. + .++. .++|+||||||||+++++++..+ +..++.++|....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 36799999999999887763221 1 1223 79999999999999999999998 6789999986533
Q ss_pred cc---------c-------cc-ccHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCc
Q 001309 874 SK---------W-------FG-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 935 (1103)
Q Consensus 874 s~---------~-------~G-~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~ 935 (1103)
.. . .+ ........+...... ..|.||+|||+|.+ + ...+..++..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCC
Confidence 21 0 01 112223333333333 34789999999987 1 123333433333322
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHHHc------
Q 001309 936 TKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA------ 1002 (1103)
Q Consensus 936 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~-~I~l~lPd~eeR~eIL~~ll~~---~~l~~dvdl~~LA~~T------ 1002 (1103)
.....++.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.. ....++..+..++..+
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111468889998877 6788999999865 7999999999999999998875 2234566678888888
Q ss_pred ---CCCcHHHHHHHHHHHHhhh
Q 001309 1003 ---DGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1003 ---eGySg~DL~~L~~~Aa~~a 1021 (1103)
.| ..+.+.++|..|+..+
T Consensus 234 ~~~~G-~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 234 DTNRG-DARLAIDILYRSAYAA 254 (389)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHH
T ss_pred CCCCC-cHHHHHHHHHHHHHHH
Confidence 44 4567778888777654
No 75
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=5.2e-13 Score=150.47 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=135.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcc
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 872 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el------g~~fi~v~~s~L 872 (1103)
.+++++|.+...+.|.+.+...+. ...+..++|+||+|+|||+|++++++.+ +.+++.++|...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 446899999999999886653211 1234689999999999999999999988 889999997542
Q ss_pred cc------c----------cccc-cHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 873 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 873 ~s------~----------~~G~-~e~~i~~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
.. . ..+. .......++....... |.||+|||++.+...... .++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhhc
Confidence 11 0 0111 2333455555555443 899999999998543211 1233343334332
Q ss_pred cccCCccEEEEEecCCC---CCCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhhcc---cCCcccHHHHHHHcC---C
Q 001309 935 RTKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKEE---LASDVDLEGIANMAD---G 1004 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~~~~---l~~dvdl~~LA~~Te---G 1004 (1103)
...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..++++..+.... ..++..+..++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 23568888888876 467888889885 4899999999999999999876421 234455677777776 5
Q ss_pred CcHHHHHHHHHHHHhhh
Q 001309 1005 YSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1005 ySg~DL~~L~~~Aa~~a 1021 (1103)
. .+.+.++|..|+..+
T Consensus 237 ~-~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 237 D-ARRALDLLRVSGEIA 252 (386)
T ss_dssp C-HHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHH
Confidence 4 445556777776543
No 76
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.5e-13 Score=151.05 Aligned_cols=185 Identities=21% Similarity=0.258 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS 870 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg------~~fi~v~~s 870 (1103)
..+|++++|++++++.|...+.. ..+ .++||+||||||||++|+++++.++ ..++.++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 35799999999999998887642 112 3599999999999999999998863 468888887
Q ss_pred ccccccccccHHHHHHHHHHHH----------------hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 871 SITSKWFGEGEKYVKAVFSLAS----------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 871 ~L~s~~~G~~e~~i~~lF~~A~----------------~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
+..+ ...++..+.... ...+.||||||+|.+. ...+..+.+ .++..
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----~~~~~~Ll~-------~le~~ 160 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----ADAQSALRR-------TMETY 160 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----HHHHHHHHH-------HHHHT
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----HHHHHHHHH-------HHHhc
Confidence 6421 112222221111 1234699999999883 112222222 22221
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHH
Q 001309 935 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNL 1013 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L 1013 (1103)
.....+|++||.+..+.+++++|+. .+.+..|+.++...+++..+....+ .++..++.++..+.|... .+.++
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r-~~~~~ 234 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR-RGITL 234 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH-HHHHH
T ss_pred ----CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH-HHHHH
Confidence 2346777788999999999999995 7889999999999999998876554 355668889999887544 44455
Q ss_pred HHHHHh
Q 001309 1014 CVTAAH 1019 (1103)
Q Consensus 1014 ~~~Aa~ 1019 (1103)
++.++.
T Consensus 235 l~~~~~ 240 (353)
T 1sxj_D 235 LQSASK 240 (353)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 555443
No 77
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.50 E-value=4.5e-14 Score=166.11 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=86.3
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEe---------cC---CCCCCcHHHHhcccc
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA---------TN---RPFDLDEAVVRRLPR 964 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaT---------TN---~p~~Ld~aLlrRF~~ 964 (1103)
.|+||||+|.|- ....+.|+..++. ++.+++|++| ++ .++.+++.+++||..
T Consensus 297 ~VliIDEa~~l~------------~~a~~aLlk~lEe----~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 297 GVLFVDEVHMLD------------IECFTYLHRALES----SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp CEEEEESGGGCB------------HHHHHHHHHHTTS----TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----cCCCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 699999999982 2344555555543 2244655565 33 267899999999965
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc-CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 001309 965 RLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1042 (1103)
Q Consensus 965 ~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~T-eGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~ 1042 (1103)
+.+++|+.++..++++..+...... ++..+..++..+ .| +.+....+++.|...+..+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~------------------ 420 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN------------------ 420 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT------------------
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc------------------
Confidence 6999999999999999987655432 455567777777 55 5555556666654433221
Q ss_pred CCCCCCccccccccHHHHHHHHHHh
Q 001309 1043 SPPLYSSVDVRPLKMDDFKYAHEQV 1067 (1103)
Q Consensus 1043 ~~~~~~~~~~r~Lt~eDF~~Ale~v 1067 (1103)
....|+.+|+..|+.-+
T Consensus 421 --------~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 421 --------GKDSIEKEHVEEISELF 437 (456)
T ss_dssp --------TCSSBCHHHHHHHHHHS
T ss_pred --------CCCccCHHHHHHHHHHh
Confidence 22468999999998765
No 78
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.2e-13 Score=150.22 Aligned_cols=160 Identities=9% Similarity=0.079 Sum_probs=113.3
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 872 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v~~s~L 872 (1103)
|.+.++..+.|...+...+. ..++.+++|+||||||||++++++++++ .+.++.++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 45666777777666553222 2345789999999999999999999998 467899998764
Q ss_pred ccc----------c------ccccHHHHHHHHHHH--HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC
Q 001309 873 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 934 (1103)
Q Consensus 873 ~s~----------~------~G~~e~~i~~lF~~A--~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl 934 (1103)
.+. . .+.....+..+|... ....+.||||||+|.|. .+..+. .++...
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L~----~l~~~~--- 157 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKILQ----YFEKWI--- 157 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHHH----HHHHHH---
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHHH----HHHhcc---
Confidence 432 1 233456778888875 34567899999999995 233333 333211
Q ss_pred cccCCccEEEEEecCCCCCCc----HHHHhccc-cccccCCCCHHHHHHHHHHHHhhc
Q 001309 935 RTKDKERVLVLAATNRPFDLD----EAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE 987 (1103)
Q Consensus 935 ~~k~~~~VlVIaTTN~p~~Ld----~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~~~ 987 (1103)
.....+++||+++|..+..+ +++.+||. .++.|++++.++..+|++..+...
T Consensus 158 -~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 158 -SSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -cccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 11346799999999876543 44567886 589999999999999999998763
No 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1e-13 Score=165.66 Aligned_cols=205 Identities=19% Similarity=0.212 Sum_probs=130.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccC-ChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQ-RPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~-~pe~f~~~~l~--~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~ 873 (1103)
..+|++++|.+..++.|.+.+..... .+..|...+.. .+++++||+||||||||++|+++|++++++++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 35899999999999999998875221 11223222221 2457899999999999999999999999999999998865
Q ss_pred cccccccH-------HHHHHHHHHH-----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCcc
Q 001309 874 SKWFGEGE-------KYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 941 (1103)
Q Consensus 874 s~~~G~~e-------~~i~~lF~~A-----~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~ 941 (1103)
........ ..+..+|..+ ....+.||||||+|.|.... +... +.+...++. .+.+
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~l----~~L~~~l~~----~~~~ 181 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGGV----GQLAQFCRK----TSTP 181 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTHH----HHHHHHHHH----CSSC
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHHH----HHHHHHHHh----cCCC
Confidence 43211000 0012233332 22457899999999995432 1111 222222221 1244
Q ss_pred EEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 942 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 942 VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l-~~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
+++|+++.....+.+ +.+| ...+.|+.|+.+++.++++..+....+ .++..+..|+..+.|.....+ ++++.+
T Consensus 182 iIli~~~~~~~~l~~-l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i-~~L~~~ 255 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FDRV-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVI-NLLSTI 255 (516)
T ss_dssp EEEEESCTTSSTTGG-GTTT-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHH-HHHTHH
T ss_pred EEEEEcCCCCccchh-hHhc-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH-HHHHHH
Confidence 566655544444543 4444 468999999999999999988876543 245568889999877554433 333333
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.49 E-value=7.7e-14 Score=176.09 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=131.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
.+|++++|.++....+.+.+.. +..+++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4788999999988888886642 233579999999999999999999987 8899999
Q ss_pred ecCccc--cccccccHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEE
Q 001309 868 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 944 (1103)
Q Consensus 868 ~~s~L~--s~~~G~~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlV 944 (1103)
+++.+. ..+.|+.+..++.+|..+... .|.||||||+|.+.+.....+..... .++..++ . ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-~~L~~~l---~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-NMLKPAL---A------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH---H------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-HHHHHHH---h------CCCeEE
Confidence 998876 456788888999999999875 68999999999997554332222221 1222222 1 145778
Q ss_pred EEecCCCC----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcC-----CCcHHHH
Q 001309 945 LAATNRPF----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMAD-----GYSGSDL 1010 (1103)
Q Consensus 945 IaTTN~p~----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~----l-~~dvdl~~LA~~Te-----GySg~DL 1010 (1103)
|++||.++ .+++++.+||. .+.++.|+.+++.+|++.++.... + ..+..+..++..+. .|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88888663 57899999997 499999999999999998876431 1 13445666666554 4556666
Q ss_pred HHHHHHHHh
Q 001309 1011 KNLCVTAAH 1019 (1103)
Q Consensus 1011 ~~L~~~Aa~ 1019 (1103)
..++.+|+.
T Consensus 382 i~lldea~a 390 (854)
T 1qvr_A 382 IDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677666654
No 81
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.48 E-value=2.8e-13 Score=154.47 Aligned_cols=255 Identities=15% Similarity=0.183 Sum_probs=165.8
Q ss_pred HHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001309 291 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 370 (1103)
Q Consensus 291 l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 370 (1103)
+.+.+++. .-.++|+++-- .+..+..|..+.-..+++++..+ .+....+.|||.||+|| -..+||||+|+..
T Consensus 70 i~~~i~~~-~~~~~~~~i~G--~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppGt--GKT~la~aia~~~ 141 (357)
T 3d8b_A 70 IMNEIMDH-GPPVNWEDIAG--VEFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPGT--GKTLIGKCIASQS 141 (357)
T ss_dssp HHHHTBCC-SCCCCGGGSCS--CHHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTTS--SHHHHHHHHHHHT
T ss_pred HHhhcccC-CCCCCHHHhCC--hHHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCCC--CHHHHHHHHHHHc
Confidence 33444432 34688998644 48899999998887888877632 23355678999999999 6999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCcccccccccccccCCCCCCCcccccccCccc
Q 001309 371 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 450 (1103)
Q Consensus 371 ~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 450 (1103)
+.+++.++.+.+.+
T Consensus 142 ~~~~~~i~~~~l~~------------------------------------------------------------------ 155 (357)
T 3d8b_A 142 GATFFSISASSLTS------------------------------------------------------------------ 155 (357)
T ss_dssp TCEEEEEEGGGGCC------------------------------------------------------------------
T ss_pred CCeEEEEehHHhhc------------------------------------------------------------------
Confidence 88887776543322
Q ss_pred ccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCCCCCCCccccccccccc
Q 001309 451 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 530 (1103)
Q Consensus 451 ~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~l~~d 530 (1103)
+|+|
T Consensus 156 -------~~~g--------------------------------------------------------------------- 159 (357)
T 3d8b_A 156 -------KWVG--------------------------------------------------------------------- 159 (357)
T ss_dssp -------SSTT---------------------------------------------------------------------
T ss_pred -------cccc---------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC----CCCEEEEeeccC
Q 001309 531 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL----PSNVVVIGSHTQ 598 (1103)
Q Consensus 531 ~~~~~~~~k~~~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~--------~~~~~~l~~~L~~l----~g~vvvIgs~~~ 598 (1103)
.....+..+|+.+.. .+|.||||||+|.+.... .+..+.|...|+.+ ..+|+|||++|+
T Consensus 160 ------~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 160 ------EGEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp ------HHHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred ------hHHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 011223455555544 789999999999965421 23344455555544 358999999994
Q ss_pred CCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhc
Q 001309 599 LDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERD 678 (1103)
Q Consensus 599 ~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~ 678 (1103)
++ .++ ++++|||...++++
T Consensus 231 ~~------------------------------~l~-------------------------------~~l~~Rf~~~i~i~ 249 (357)
T 3d8b_A 231 PQ------------------------------EID-------------------------------EAARRRLVKRLYIP 249 (357)
T ss_dssp GG------------------------------GBC-------------------------------HHHHTTCCEEEECC
T ss_pred hh------------------------------hCC-------------------------------HHHHhhCceEEEeC
Confidence 22 222 25555666566666
Q ss_pred hhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHH
Q 001309 679 VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 758 (1103)
Q Consensus 679 Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~d 758 (1103)
+|+...|..|+..+.......+++.+++.|+..+.||++++|+.+|..|...++......... .........+...+
T Consensus 250 ~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~---~~~~~~~~~i~~~d 326 (357)
T 3d8b_A 250 LPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA---TITPDQVRPIAYID 326 (357)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------------CCCBCHHH
T ss_pred CcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc---cccccccCCcCHHH
Confidence 666666666666654333334677889999999999999999999999998888654321111 11111223456778
Q ss_pred HHhhhhhhhh
Q 001309 759 LQGIQSESKS 768 (1103)
Q Consensus 759 f~~a~~eik~ 768 (1103)
|..++.++++
T Consensus 327 ~~~al~~~~p 336 (357)
T 3d8b_A 327 FENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHhcCC
Confidence 8887766665
No 82
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.46 E-value=6.6e-13 Score=146.31 Aligned_cols=188 Identities=22% Similarity=0.230 Sum_probs=131.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~ 871 (1103)
..+|++++|++.+++.|.+.+.. ... .++||+||||||||++|+++++.+ +.+++.+++++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 45799999999999988876542 112 349999999999999999999986 45688899876
Q ss_pred cccccccccHHHHHHHHHHH-H-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecC
Q 001309 872 ITSKWFGEGEKYVKAVFSLA-S-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 949 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A-~-~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN 949 (1103)
..+ .......+..+.... . ...+.||+|||+|.+.. ...+.++..++. .+.++.+|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~----~~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEM----YSKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSS----SSSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHh----cCCCCeEEEEeC
Confidence 432 111222222222110 1 13478999999998821 223444444443 235688899999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 950 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 950 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
.+..+.+++.+|+. .+.+.+|+.+++.++++.++.+.++. ++..+..++..+.|... .+.++++.++
T Consensus 141 ~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r-~~~~~l~~~~ 208 (319)
T 2chq_A 141 YVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR-KAINALQGAA 208 (319)
T ss_dssp CGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHH-HHHHHHHHHH
T ss_pred ChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 99999999999995 89999999999999999998876543 45567788877776544 4445555544
No 83
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=2.9e-12 Score=144.64 Aligned_cols=201 Identities=22% Similarity=0.253 Sum_probs=132.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 877 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~ 877 (1103)
.+|++++|.+.+++.+...+..... + ..++.+++|+||||+|||+||+++|..++.++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4788999999888888776642111 0 124467999999999999999999999999887776554321
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh-h--cCCcc----cCCccEEEEEecCC
Q 001309 878 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN-W--DGLRT----KDKERVLVLAATNR 950 (1103)
Q Consensus 878 G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~-l--dgl~~----k~~~~VlVIaTTN~ 950 (1103)
...+..++.. .....|+||||++.+.. ...+.+...+...... + .+... ..-..+.++++|+.
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 1223333322 12458999999998842 1122221111110000 0 00000 00124677889999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001309 951 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 951 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~a 1021 (1103)
+..|++.+++||...+.+++|+.+++.++++......... ++..+..||..+.|.. +.+.++++.+...+
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~~a 230 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRDML 230 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHHHH
Confidence 9999999999998788999999999999999987764433 4555788898888754 67777777665443
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.46 E-value=1.3e-13 Score=171.83 Aligned_cols=182 Identities=20% Similarity=0.302 Sum_probs=129.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 867 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----------g~~fi~v 867 (1103)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 4688999999999999887752 233589999999999999999999997 7888888
Q ss_pred ecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEe
Q 001309 868 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 868 ~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaT 947 (1103)
++ ...+.|+.+..++.+|..+....|+||||| . . . ...+.++..+. ...+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~---~----~~~~~L~~~l~------~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A---I----DASNILKPSLA------RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCTT------SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c---h----hHHHHHHHHHh------cCCEEEEeC
Confidence 87 445677888899999999999899999999 1 1 0 11122222222 356899999
Q ss_pred cCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcC-----CCcHHHHHH
Q 001309 948 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMAD-----GYSGSDLKN 1012 (1103)
Q Consensus 948 TN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~----l-~~dvdl~~LA~~Te-----GySg~DL~~ 1012 (1103)
||... .++++++||| ..+.++.|+.+++.+|++.+..... + .++..+..++..+. ++.+.....
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99887 7999999999 5699999999999999998776532 1 13444666666554 445566666
Q ss_pred HHHHHHh
Q 001309 1013 LCVTAAH 1019 (1103)
Q Consensus 1013 L~~~Aa~ 1019 (1103)
++..|+.
T Consensus 377 ll~~a~~ 383 (758)
T 3pxi_A 377 LIDEAGS 383 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 85
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.2e-12 Score=144.60 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=130.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 872 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L 872 (1103)
.+|++++|++..++.|.+.+.. .+.+ ++||+||+|+|||++|+++++.+ +.+++.+++++.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 5789999999999999887752 1222 49999999999999999999986 456888887653
Q ss_pred ccccccccHHHHHHHHHHHH-------hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 873 TSKWFGEGEKYVKAVFSLAS-------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 873 ~s~~~G~~e~~i~~lF~~A~-------~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
.+ ...++.++.... ...+.||+|||+|.+.. . ..+.|+..++. .+..+.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----~-------~~~~L~~~le~----~~~~~~~i 141 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----G-------AQQALRRTMEL----YSNSTRFA 141 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----H-------HHHTTHHHHHH----TTTTEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----H-------HHHHHHHHHhc----cCCCceEE
Confidence 21 234455554443 22478999999998831 1 12233333322 22557888
Q ss_pred EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001309 946 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1017 (1103)
Q Consensus 946 aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~A 1017 (1103)
++||.+..+.+++.+|+. .+.++.|+.++..++++..+...++. ++..+..++..+.|.....+ ++++.+
T Consensus 142 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~-~~l~~~ 212 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI-NNLQST 212 (323)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred EEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHH
Confidence 888999999999999984 89999999999999999988765433 45567888888877655444 443433
No 86
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.7e-12 Score=143.61 Aligned_cols=189 Identities=24% Similarity=0.274 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s~ 871 (1103)
..+|++++|++.+++.|...+.. + +. .++||+||||+|||++|+++++.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 35789999999999999987752 1 12 3599999999999999999999863 3578888765
Q ss_pred cccccccccHHHHHHHHHHH--HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecC
Q 001309 872 ITSKWFGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 949 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A--~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN 949 (1103)
..+. ......+....... ....+.||+|||+|.+. ...+..+ +..++. .+..+.+|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~~~~~L-------~~~le~----~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----QDAQQAL-------RRTMEM----FSSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----HHHHHHH-------HHHHHH----TTTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----HHHHHHH-------HHHHHh----cCCCCeEEEEeC
Confidence 3221 11111122111000 01347899999999882 1222222 222222 124578888999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001309 950 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 950 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~~Aa~ 1019 (1103)
.+..+.+++.+|+. .+.+++|+.++..++++..+...++. ++..+..++..+.|. .+.+.++++.++.
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD-MRRAINILQAAAA 217 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred CccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC-HHHHHHHHHHHHh
Confidence 99999999999985 78999999999999999988765542 455678888888774 4455566665553
No 87
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.44 E-value=3.8e-13 Score=146.07 Aligned_cols=201 Identities=19% Similarity=0.165 Sum_probs=111.7
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 874 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s~L~s 874 (1103)
.+|++++|.+..+..+.+.+.... ....++||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 478999999999888877665311 1235799999999999999999999874 7899999987632
Q ss_pred c-----cccccHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccE
Q 001309 875 K-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 942 (1103)
Q Consensus 875 ~-----~~G~~e~~-------i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~V 942 (1103)
. .+|..... ....|..+ ..++||||||+.+. ...+..+.++++.......+.......++
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----MMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----HHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----HHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 2 12211100 01123333 35899999999882 22333333333322111111111123467
Q ss_pred EEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhh----ccc-----CCcccHHHHHHHc
Q 001309 943 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK----EEL-----ASDVDLEGIANMA 1002 (1103)
Q Consensus 943 lVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~~----~~l-----~~dvdl~~LA~~T 1002 (1103)
.+|+|||.+ ..+.+.+.+||. .+.+.+|+..+|. .+++.++.. ... .++..+..|....
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 221 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYR 221 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSC
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCC
Confidence 899999874 257789999995 3566777766553 344444433 111 1222233333332
Q ss_pred CCCcHHHHHHHHHHHHh
Q 001309 1003 DGYSGSDLKNLCVTAAH 1019 (1103)
Q Consensus 1003 eGySg~DL~~L~~~Aa~ 1019 (1103)
-..+.++|.++++.++.
T Consensus 222 ~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 222 WPGNIRELKNVVERSVY 238 (265)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 12244567777666543
No 88
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.44 E-value=2e-12 Score=146.01 Aligned_cols=184 Identities=24% Similarity=0.264 Sum_probs=131.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 863 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~-------------- 863 (1103)
.+|++++|++..++.|...+.. .+.++.+||+||+|+|||++|+++++.+++.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4788999999999999987752 1233579999999999999999999988542
Q ss_pred ----------EEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHh
Q 001309 864 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 929 (1103)
Q Consensus 864 ----------fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~ 929 (1103)
++.++...- .....++.++..+.. ..+.||+|||+|.+. . ...+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----~-------~~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----R-------HSFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----H-------HHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----H-------HHHHHHHH
Confidence 233333210 111235556655542 236899999999882 1 12233444
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 001309 930 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1008 (1103)
Q Consensus 930 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg~ 1008 (1103)
.++. .+.++++|++|+.+..+.+.+.+|+ ..+.+..|+.++..++++.++...++. ++..+..++..+.| +.+
T Consensus 142 ~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 4433 2356888888888889999999998 789999999999999999998776543 44557788888877 555
Q ss_pred HHHHHHHHHH
Q 001309 1009 DLKNLCVTAA 1018 (1103)
Q Consensus 1009 DL~~L~~~Aa 1018 (1103)
++.++++.+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 89
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.42 E-value=4.5e-13 Score=158.40 Aligned_cols=125 Identities=22% Similarity=0.358 Sum_probs=93.7
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCCC
Q 001309 544 ELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGG 610 (1103)
Q Consensus 544 ~l~evl~~e~~~~p~Ilf~~d~e~~l~~--------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~ 610 (1103)
.+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. .+|+||++||+++.
T Consensus 99 ~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~--------- 166 (476)
T 2ce7_A 99 DLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI--------- 166 (476)
T ss_dssp HHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG---------
T ss_pred HHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh---------
Confidence 44554444 78999999999995331 1 134455555565553 48999999995332
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccch
Q 001309 611 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 688 (1103)
Q Consensus 611 ~~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 688 (1103)
+|+ +++| ||++++.+++|+..+|.+|
T Consensus 167 -------------Ld~---------------------------------------allR~gRFd~~i~i~~Pd~~~R~~I 194 (476)
T 2ce7_A 167 -------------LDP---------------------------------------ALLRPGRFDKKIVVDPPDMLGRKKI 194 (476)
T ss_dssp -------------SCG---------------------------------------GGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred -------------hch---------------------------------------hhcccCcceeEeecCCCCHHHHHHH
Confidence 222 6666 8888999999999999999
Q ss_pred hHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 689 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 689 l~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
+++|.. ..++ ++++++.++..+.||+|+||+.+|..|+..+..+
T Consensus 195 l~~~~~--~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 195 LEIHTR--NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp HHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--hCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 999854 3344 5678999999999999999999999999888753
No 90
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.41 E-value=6.9e-13 Score=152.60 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=66.6
Q ss_pred HHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHH
Q 001309 288 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 367 (1103)
Q Consensus 288 ~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA 367 (1103)
.+.+.+.++++ .-.++|+++--. +..+..|.......+.++++.. .+....+.|||.||+|| ..++||+|+|
T Consensus 98 ~~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGt--GKT~la~aia 169 (389)
T 3vfd_A 98 ANLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPGN--GKTMLAKAVA 169 (389)
T ss_dssp CTTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTTS--CHHHHHHHHH
T ss_pred HHHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCCC--CHHHHHHHHH
Confidence 33445555554 357899997665 8899999999888888777632 33345789999999999 6999999999
Q ss_pred hhcCCeEEEEeccCCC
Q 001309 368 KHFSARLLIVDSLLLP 383 (1103)
Q Consensus 368 ~~f~a~LL~lDs~~~~ 383 (1103)
++++.+++.++...+.
T Consensus 170 ~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 170 AESNATFFNISAASLT 185 (389)
T ss_dssp HHTTCEEEEECSCCC-
T ss_pred HhhcCcEEEeeHHHhh
Confidence 9999988887764443
No 91
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.41 E-value=3.7e-13 Score=150.36 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=123.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~--- 875 (1103)
+++|.+..++.+.+.+.... ....+|||+||||||||++|++|++.. +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 57888888888887765311 223579999999999999999999976 679999999875432
Q ss_pred --cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 876 --WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 876 --~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
.+|... ......|..|. .++||||||+.| +...+..+.+++++......|.....+.++.||+
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----SPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----CHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 222110 01223455554 389999999988 2223333333333321111121122235689999
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhhc----c----cCCcccHHHHHHHcCCCcH
Q 001309 947 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKE----E----LASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 947 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~~~----~----l~~dvdl~~LA~~TeGySg 1007 (1103)
|||.. ..+.+.+..||. .+.+.+|...+|. .++++++.+. . ..++..+..|....-..+.
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnv 221 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNI 221 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHH
T ss_pred ecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCH
Confidence 99975 246778888885 5667777766554 4666665542 1 1123334555554422356
Q ss_pred HHHHHHHHHHHhhh
Q 001309 1008 SDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1008 ~DL~~L~~~Aa~~a 1021 (1103)
++|.++++.|+..+
T Consensus 222 ReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 222 RELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 78888888876543
No 92
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=5.2e-12 Score=142.13 Aligned_cols=187 Identities=14% Similarity=0.193 Sum_probs=122.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 862 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~-------------- 862 (1103)
..+|++++|++.+++.+...+.. . .+.+. +||+||+|+|||+++++++.++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ---------P---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC---------T---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh---------C---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 45899999999999888775510 1 12233 999999999999999999996511
Q ss_pred ---------------cEEEEecCccccccccccHHHHHHHHHHHH--------------hcCCeEEEEccccccccCCCC
Q 001309 863 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 863 ---------------~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~--------------~~~PsILfIDEID~L~~~r~~ 913 (1103)
+++.++..... ......++..+..+. ...|.||+|||++.| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 12222221110 001112444444332 225679999999986 2
Q ss_pred CchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-C-
Q 001309 914 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-S- 991 (1103)
Q Consensus 914 ~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~- 991 (1103)
...+..+ +..++.. +.+..+|.+|+.+..+.+++++|+ ..+.+++|+.++..++++..+.+.++. +
T Consensus 148 ~~~~~~L-------~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 KDAQAAL-------RRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp HHHHHHH-------HHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHH-------HHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 1222222 2222221 235788888898999999999999 789999999999999999998876543 4
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001309 992 DVDLEGIANMADGYSGSDLKNLCVTAA 1018 (1103)
Q Consensus 992 dvdl~~LA~~TeGySg~DL~~L~~~Aa 1018 (1103)
+..+..++..+.|..+ ++.++++.++
T Consensus 216 ~~~l~~i~~~~~G~~r-~a~~~l~~~~ 241 (354)
T 1sxj_E 216 KDILKRIAQASNGNLR-VSLLMLESMA 241 (354)
T ss_dssp SHHHHHHHHHHTTCHH-HHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 5667889988877544 4445555444
No 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.34 E-value=4.6e-12 Score=136.84 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCccccccccccccccchhHHHHHHHhhhhhcccccc-ccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEE
Q 001309 297 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 375 (1103)
Q Consensus 297 ~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~-~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL 375 (1103)
+.+...++|+++--+ +..|..|..... .+++++. .+++. ...+.|||.||+|| .+.+||||||+..+++++
T Consensus 3 ~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 3 TEDQIKTTFADVAGC--DEAKEEVAELVE-YLREPSRFQKLGG---KIPKGVLMVGPPGT--GKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp EECSSCCCGGGSCSC--HHHHHHTHHHHH-HHHCGGGC--------CCCCEEEEECCTTS--CHHHHHHHHHHHHTCCEE
T ss_pred CccCCCCCHHHhcCc--HHHHHHHHHHHH-HHhCHHHHHHcCC---CCCCeEEEECcCCC--CHHHHHHHHHHHcCCCEE
Confidence 345667899997766 888888877654 2555432 22222 23456999999999 699999999999988876
Q ss_pred EEec
Q 001309 376 IVDS 379 (1103)
Q Consensus 376 ~lDs 379 (1103)
.++.
T Consensus 75 ~i~~ 78 (257)
T 1lv7_A 75 TISG 78 (257)
T ss_dssp EECS
T ss_pred EEeH
Confidence 6654
No 94
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=2.5e-12 Score=140.53 Aligned_cols=75 Identities=24% Similarity=0.226 Sum_probs=59.1
Q ss_pred cccccccccccccchhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 300 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 300 ~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
.-+++|+++.-+ +..+..|.......+++++.. +++ + ...+.|||.||+|| .+.+||||+|+.++.+++.++
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~G~~Gt--GKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--I-EPPKGILLYGPPGT--GKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--C-CCCSEEEEESSSSS--SHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEe
Confidence 346889997776 999999999888888887654 332 2 34566999999999 699999999999988887776
Q ss_pred ccC
Q 001309 379 SLL 381 (1103)
Q Consensus 379 s~~ 381 (1103)
...
T Consensus 84 ~~~ 86 (285)
T 3h4m_A 84 GSE 86 (285)
T ss_dssp GGG
T ss_pred hHH
Confidence 533
No 95
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2.7e-13 Score=164.62 Aligned_cols=173 Identities=21% Similarity=0.293 Sum_probs=105.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecCccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 877 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v----~~s~L~s~~~ 877 (1103)
.|+|++.++..+...+.. ..+..+.. ...+...++||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 588999988777433221 10000000 1122334799999999999999999999987665442 2222222211
Q ss_pred ccc---H-HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhc--CCcccCCccEEEEEecCCC
Q 001309 878 GEG---E-KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 951 (1103)
Q Consensus 878 G~~---e-~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ld--gl~~k~~~~VlVIaTTN~p 951 (1103)
... + ......+..|. .+||||||||.+ +...+..+..++++....+. |.....+.++.||+|||+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~---~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLAD---GGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHHS---SSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEecC---CCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 110 0 00112333443 489999999988 33445555555554333222 3333335678999999998
Q ss_pred C-------------CCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhh
Q 001309 952 F-------------DLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 952 ~-------------~Ld~aLlrRF~~-~I~l~lPd~eeR~eIL~~ll~~ 986 (1103)
. .|++++++||+. .+..+.|+.+ ...|.++++..
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 6 899999999974 4555777777 88888887765
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.30 E-value=3e-12 Score=152.30 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=100.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCc-ccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITSKWFG 878 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~-L~s~~~G 878 (1103)
.|+|.+++++.+...+.. ..++||+||||||||+||+++|+.++ .+|..+.+.- ..+..+|
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 578999998887665531 14899999999999999999999884 4666665532 1112222
Q ss_pred cc--HH-HHHHHHHHHHhc---CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC
Q 001309 879 EG--EK-YVKAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 952 (1103)
Q Consensus 879 ~~--e~-~i~~lF~~A~~~---~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 952 (1103)
.. .. .-...|..+... .++|||||||+.+ ++..+..+..++++....+.|.....+.++ +|+|||+..
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~lp 160 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNELP 160 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSCC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccCC
Confidence 11 00 012233322221 4679999999876 334445555555554444444443334444 566667532
Q ss_pred ---CCcHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001309 953 ---DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 984 (1103)
Q Consensus 953 ---~Ld~aLlrRF~~~I~l~lPd~-eeR~eIL~~ll 984 (1103)
.+.+++++||...+.++.|+. +++.+|++...
T Consensus 161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 355799999988899999987 77888887643
No 97
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=9.6e-11 Score=132.06 Aligned_cols=174 Identities=22% Similarity=0.283 Sum_probs=119.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 871 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg-----~~fi~v~~s~ 871 (1103)
..+|++++|++.+++.|...+.. + +. .++||+||||||||++|+++|+.+. ..+..+++++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 35789999999999999887752 1 12 2499999999999999999999873 2467777654
Q ss_pred cccccccccHHHHHHHHHHHHh------cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEE
Q 001309 872 ITSKWFGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 945 (1103)
Q Consensus 872 L~s~~~G~~e~~i~~lF~~A~~------~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVI 945 (1103)
..+ ...++..+..... ..+.|++|||+|.|. ...+..+.++++ . .+....+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~~~~L~~~le-------~----~~~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAAQNALRRVIE-------R----YTKNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHHHHHHHHHHH-------H----TTTTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHHHHHHHHHHh-------c----CCCCeEEE
Confidence 211 2233333322221 136899999999882 122233333322 2 12456777
Q ss_pred EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 001309 946 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 946 aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~-~dvdl~~LA~~TeGySg 1007 (1103)
++||.+..+.+++++|+. .+.+..++.++..+++...+....+. ++..+..++..+.|...
T Consensus 145 l~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHH
T ss_pred EEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 888999999999999984 78888899999999998888654432 44556777777766433
No 98
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.27 E-value=6e-12 Score=149.62 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=56.7
Q ss_pred hHHH--HHHHHHhhchhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 666 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 666 ALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
+++| ||++++++++|+..+|.+|++.|.. ...+ +++++..+|..+.||+|+||+.+|..|+..|..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 6666 8889999999999999999998853 3345 577899999999999999999999999988775
No 99
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=132.35 Aligned_cols=72 Identities=25% Similarity=0.235 Sum_probs=52.0
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001309 302 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 380 (1103)
Q Consensus 302 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 380 (1103)
+++|+++--+ ++.|..|...... +++++ +..++ ....+.|||.||+|| .+.+||||+|++++.+++.++..
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPGC--GKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTTS--SHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEechH
Confidence 5789987666 8888888877654 44443 22332 234567999999999 69999999999998888777654
Q ss_pred C
Q 001309 381 L 381 (1103)
Q Consensus 381 ~ 381 (1103)
.
T Consensus 74 ~ 74 (262)
T 2qz4_A 74 E 74 (262)
T ss_dssp T
T ss_pred H
Confidence 3
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.25 E-value=6.8e-12 Score=124.68 Aligned_cols=132 Identities=8% Similarity=0.114 Sum_probs=87.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccc
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 878 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G 878 (1103)
+++|.+...+.+.+.+... .....+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 5678888888887766531 1123579999999999999999999887 78999 999876554
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-------
Q 001309 879 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------- 951 (1103)
Q Consensus 879 ~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p------- 951 (1103)
......|..+.. ++|||||||.+ +...+.. ++..+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~~---g~l~ldei~~l-----~~~~q~~-------Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQG---GTLVLSHPEHL-----TREQQYH-------LVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHTT---SCEEEECGGGS-----CHHHHHH-------HHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcCC---cEEEEcChHHC-----CHHHHHH-------HHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 234456666644 89999999988 2222222 2222221 23457888998864
Q ss_pred CCCcHHHHhccccccccCCCC
Q 001309 952 FDLDEAVVRRLPRRLMVNLPD 972 (1103)
Q Consensus 952 ~~Ld~aLlrRF~~~I~l~lPd 972 (1103)
..+.+.+..|+. .+.+.+|.
T Consensus 124 ~~~~~~L~~rl~-~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACLP 143 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECCC
T ss_pred CCCCHHHHHHhc-CCEEeCCC
Confidence 256677777763 34455554
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.23 E-value=3.5e-12 Score=126.60 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=86.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccH
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 881 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e 881 (1103)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 57788888888888775321 1235799999999999999999999888 99999998765433
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCC-CC----CcH
Q 001309 882 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDE 956 (1103)
Q Consensus 882 ~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~ 956 (1103)
...+|..+. .++|||||||.+ +...+..+.++++.. .+.++.+|+|||.+ .. +.+
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l-----~~~~q~~Ll~~l~~~----------~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQY-----SRNIQTGITFIIGKA----------ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTC-----CHHHHHHHHHHHHHH----------TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHC-----CHHHHHHHHHHHHhC----------CCCCEEEEEecCCCHHHHHhCccH
Confidence 456666664 489999999988 222233333332221 12457888888754 33 445
Q ss_pred HHHhccccccccCCCC
Q 001309 957 AVVRRLPRRLMVNLPD 972 (1103)
Q Consensus 957 aLlrRF~~~I~l~lPd 972 (1103)
.+..|+. .+.+.+|.
T Consensus 127 ~L~~rl~-~~~i~lPp 141 (143)
T 3co5_A 127 KLAGLFS-ESVVRIPP 141 (143)
T ss_dssp HHHHHSS-SEEEEECC
T ss_pred HHHHHhc-CcEEeCCC
Confidence 5666763 33444544
No 102
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.20 E-value=3.1e-10 Score=128.08 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=115.5
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001309 806 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 863 (1103)
Q Consensus 806 ~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---------------------- 863 (1103)
+++..+.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46667777776642 2345679999999999999999999988542
Q ss_pred --EEEEecCccccccccccHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc
Q 001309 864 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 937 (1103)
Q Consensus 864 --fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k 937 (1103)
++.++...- .-......++.++..+... ...|++|||+|.|. ....+.|+..++.
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe---- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE---- 134 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS----
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC----
Confidence 333333210 0012234567777766533 35899999999982 1123445555544
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 001309 938 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 938 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~D 1009 (1103)
++.++++|.+|+.++.+.+++++|+ ..+.++.|+.++..++++... ..++..+..++..+.|..+..
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCHHHH
T ss_pred CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHH
Confidence 3456888888898999999999998 579999999999998888764 234555677888887755433
No 103
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.19 E-value=8.2e-12 Score=135.40 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=52.0
Q ss_pred cCCccccccccccccccchhHHHHHHHhhhhhcccccc-ccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001309 296 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 374 (1103)
Q Consensus 296 ~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~-~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 374 (1103)
++.+...++|+++-.+ +..+..|..... .+++++. .+++. ...+.|||.||+|| .+.+||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHSC---CCCSCCCCBCSSCS--SHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCCC---CCCceEEEECCCCC--cHHHHHHHHHHHhCCCE
Confidence 3566778999997665 778888877654 3555443 22322 22345999999999 69999999999887654
Q ss_pred EEE
Q 001309 375 LIV 377 (1103)
Q Consensus 375 L~l 377 (1103)
+.+
T Consensus 73 ~~v 75 (268)
T 2r62_A 73 FSM 75 (268)
T ss_dssp CCC
T ss_pred EEe
Confidence 433
No 104
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.13 E-value=2e-10 Score=139.74 Aligned_cols=223 Identities=19% Similarity=0.247 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccc
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSIT 873 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~---fi~v~~s~L~ 873 (1103)
...|++++|++.+++.+...+.. ...++|+||||||||+||++|+..+... .+.+.+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred ccccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 35789999999999888777652 2479999999999999999999987432 2222221110
Q ss_pred c--ccc-----cccH-------------------------------------------------HHHHHHHH--------
Q 001309 874 S--KWF-----GEGE-------------------------------------------------KYVKAVFS-------- 889 (1103)
Q Consensus 874 s--~~~-----G~~e-------------------------------------------------~~i~~lF~-------- 889 (1103)
. ... +..+ .....+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0 000 0000 00111111
Q ss_pred ---------------HHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCC----------cccCCccEEE
Q 001309 890 ---------------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDKERVLV 944 (1103)
Q Consensus 890 ---------------~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl----------~~k~~~~VlV 944 (1103)
......+++|||||++.| ++..+..+.+++++....+.+. ....+.++.|
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~v 255 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVL 255 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhC-----CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEE
Confidence 011224579999999998 3445556666665544444332 1122457899
Q ss_pred EEecCCC--CCCcHHHHhccc---cccccCC--C-CHHHHHHHHHHHHhhcc------cCCcccHHHHHHHc---CCC--
Q 001309 945 LAATNRP--FDLDEAVVRRLP---RRLMVNL--P-DAPNREKIIRVILAKEE------LASDVDLEGIANMA---DGY-- 1005 (1103)
Q Consensus 945 IaTTN~p--~~Ld~aLlrRF~---~~I~l~l--P-d~eeR~eIL~~ll~~~~------l~~dvdl~~LA~~T---eGy-- 1005 (1103)
|+|||+. +.+++++++||. ..+.++. + ..+....+++.+..... ..++..+..|.... .|.
T Consensus 256 I~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~ 335 (604)
T 3k1j_A 256 VAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKG 335 (604)
T ss_dssp EEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTT
T ss_pred EEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccc
Confidence 9999986 679999999985 2333322 1 24455666655443321 11233344444432 442
Q ss_pred ----cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 001309 1006 ----SGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1066 (1103)
Q Consensus 1006 ----Sg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~ 1066 (1103)
+.+++.++++.|...+..+ ....++.+|+..|++.
T Consensus 336 ~l~~~~R~l~~llr~A~~~A~~~--------------------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 336 HLTLRLRDLGGIVRAAGDIAVKK--------------------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhc--------------------------CcccccHHHHHHHHHh
Confidence 5778888887765443221 1235888898888854
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.10 E-value=1.6e-09 Score=123.83 Aligned_cols=205 Identities=15% Similarity=0.095 Sum_probs=126.7
Q ss_pred ccccCcHHHHHHHHHHH-hcccCChhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEEe
Q 001309 801 DDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINIS 868 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V-~~pl~~pe~f~~~~l~~p~~gVLL--~GPpGTGKT~LAkAIA~el---------g~~fi~v~ 868 (1103)
++++|.+...+.|.+.+ ..... +....+..++| +||+|+|||+|++++++.+ ++.++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 57899999988888877 43111 10123467999 9999999999999999876 56788888
Q ss_pred cCcccc------cc---c-------cc-cHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh
Q 001309 869 MSSITS------KW---F-------GE-GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 869 ~s~L~s------~~---~-------G~-~e~~i~~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ 930 (1103)
|....+ .. + +. .......+..... ...|.||+|||+|.+...+. ...+.+. .++..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~----~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLY----TLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHH----HHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHH----HHHHH
Confidence 743111 00 0 11 1222333333332 24578999999998843211 1122222 22222
Q ss_pred hcCCcccCC--ccEEEEEecCCCC---CCc---HHHHhccccccccCCCCHHHHHHHHHHHHhhcc---cCCcccHHHHH
Q 001309 931 WDGLRTKDK--ERVLVLAATNRPF---DLD---EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE---LASDVDLEGIA 999 (1103)
Q Consensus 931 ldgl~~k~~--~~VlVIaTTN~p~---~Ld---~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~---l~~dvdl~~LA 999 (1103)
+..... .. .++.+|++|+.+. .++ +.+.++|...+.+++++.++..++++..+.... ..++..+..++
T Consensus 168 ~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 168 HEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 222110 12 5688888887654 344 566677766689999999999999988775421 23455677888
Q ss_pred HHcC------CCcHHHHHHHHHHHHhhh
Q 001309 1000 NMAD------GYSGSDLKNLCVTAAHCP 1021 (1103)
Q Consensus 1000 ~~Te------GySg~DL~~L~~~Aa~~a 1021 (1103)
..+. |. +..+..++..|+..+
T Consensus 247 ~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 8888 64 556677777665443
No 106
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.09 E-value=1e-10 Score=126.08 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=51.6
Q ss_pred hHHH--HHHHHHhhchhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhcccc
Q 001309 666 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 734 (1103)
Q Consensus 666 ALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r 734 (1103)
+++| ||++.+++++|+...|.+|++.|.. ...+ ++.++..+|..+.||+++||+.+|..|+..|..+
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5555 6777777777777777777776642 2334 5677999999999999999999999999887753
No 107
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=1.6e-09 Score=121.24 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=102.5
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcccccccc
Q 001309 805 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 878 (1103)
Q Consensus 805 G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el------g~~fi~v~~s~L~s~~~G 878 (1103)
|++++.+.|...+.. .+ .+.+||+||||+|||++|+++|+.+ ...++.+++..- .
T Consensus 1 g~~~~~~~L~~~i~~-------------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----N 61 (305)
T ss_dssp ---CHHHHHHHHHHT-------------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----C
T ss_pred ChHHHHHHHHHHHHC-------------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----C
Confidence 456677777777652 12 4689999999999999999999874 346777775420 1
Q ss_pred ccHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCC
Q 001309 879 EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 954 (1103)
Q Consensus 879 ~~e~~i~~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 954 (1103)
..-..++.++..+...+ ..|+||||+|.|. ....+.|+..++. ++..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEe----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEE----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHS----CCTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhC----CCCCeEEEEEECChHhC
Confidence 22345777887776433 3699999999982 1223445555543 33567888888888999
Q ss_pred cHHHHhccccccccCCCCHHHHHHHHHHHH
Q 001309 955 DEAVVRRLPRRLMVNLPDAPNREKIIRVIL 984 (1103)
Q Consensus 955 d~aLlrRF~~~I~l~lPd~eeR~eIL~~ll 984 (1103)
.+++++| .+.+..|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999999888876
No 108
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.99 E-value=9.4e-10 Score=120.48 Aligned_cols=66 Identities=24% Similarity=0.329 Sum_probs=50.6
Q ss_pred hHHH--HHHHHHhhchhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 666 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 666 ALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
+++| ||++.+++++|+...|.+|++.|. +...+ +++++..+|..+.||+++||+.+|..|+..+..
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHH--TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHH--ccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5555 677777777777777777777664 22344 567789999999999999999999999988765
No 109
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.99 E-value=5.4e-10 Score=147.61 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=107.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCC----------hhhhhc------CCCC---------CCCce--EEEEcCCCC
Q 001309 795 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQLT---------KPCKG--ILLFGPPGT 847 (1103)
Q Consensus 795 e~~~sfddI~G~e~ik~~L~e~V~~pl~~----------pe~f~~------~~l~---------~p~~g--VLL~GPpGT 847 (1103)
...+.|++++|+++.|+.+.+.+.+|+.+ ++.|.. .++. .+|++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44679999999999999999999988843 556655 2211 13344 999999999
Q ss_pred hHHHHHHHHHHHh---CCcEEEEecCccc------------cccccc----cHHHHHHHHHHHHhcCCeEEEEccccccc
Q 001309 848 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 848 GKT~LAkAIA~el---g~~fi~v~~s~L~------------s~~~G~----~e~~i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
|||+||++++.+. +-+.+.++..+.. ++|+++ .|+.++.+|..|+...|++||+|+++.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998876 5666666665533 566777 89999999999999999999999999998
Q ss_pred cCCC---CCc--hhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC
Q 001309 909 GRRE---NPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 950 (1103)
Q Consensus 909 ~~r~---~~~--~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~ 950 (1103)
+.+. ..+ ......+++++++..++++... .+|.|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 8731 111 2245567788888888876543 457777 5554
No 110
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.95 E-value=1.3e-09 Score=100.14 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 001309 972 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1051 (1103)
Q Consensus 972 d~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~ 1051 (1103)
+.++|.+||+.++++.++.+++++..||..|+||||+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 568999999999999988899999999999999999999999999999998861
Q ss_pred cccccHHHHHHHHHHhccCcccccccchhhhHHH
Q 001309 1052 VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1085 (1103)
Q Consensus 1052 ~r~Lt~eDF~~Ale~v~pS~s~e~~~~~~~v~W~ 1085 (1103)
...|+++||..|++++.++...... ...+..||
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~-~~~y~~w~ 88 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSS-TSRYMQYN 88 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC----------------
T ss_pred cccCCHHHHHHHHHHHhcCcccccc-hhHHhccC
Confidence 2469999999999999988765432 33445775
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.93 E-value=8.7e-10 Score=122.34 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=65.4
Q ss_pred CCCeEEEEcChhhhhccCh----------hhHHHHHHHHhcC-------------CCCEEEEeeccCCCCccccCCCCCc
Q 001309 555 SSPLIVFVKDIEKSLTGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQLDSRKEKSHPGGL 611 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~~~----------~~~~~l~~~L~~l-------------~g~vvvIgs~~~~d~~k~k~~~~~~ 611 (1103)
..|.||||||+|++..+.. ++.+.|...|+.. ..+|+||+++|+++.
T Consensus 98 ~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~---------- 167 (293)
T 3t15_A 98 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST---------- 167 (293)
T ss_dssp SSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC----------
T ss_pred CCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc----------
Confidence 7899999999999654211 3446666666532 247999999995433
Q ss_pred eeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHH--HHHHHHhhchhhhhcccchh
Q 001309 612 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 689 (1103)
Q Consensus 612 ~~~~~~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il 689 (1103)
+|+ +++| ||++.++ +|+...|.+|+
T Consensus 168 ------------ld~---------------------------------------al~R~~R~d~~i~--~P~~~~r~~Il 194 (293)
T 3t15_A 168 ------------LYA---------------------------------------PLIRDGRMEKFYW--APTREDRIGVC 194 (293)
T ss_dssp --------------C---------------------------------------HHHHHHHEEEEEE--CCCHHHHHHHH
T ss_pred ------------CCH---------------------------------------HHhCCCCCceeEe--CcCHHHHHHHH
Confidence 222 7777 7777665 57888888888
Q ss_pred HHHHHhhhCCCCccchhhhhhccCCCCHHHHH
Q 001309 690 SIRSVLSRNGLDCVDLESLCIKDQTLTTEGVE 721 (1103)
Q Consensus 690 ~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~ 721 (1103)
+-|. ... ..+++.++..+.+|++++|+
T Consensus 195 ~~~~--~~~---~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 195 TGIF--RTD---NVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHH--GGG---CCCHHHHHHHHHHSCSCCHH
T ss_pred HHhc--cCC---CCCHHHHHHHhCCCCcccHH
Confidence 7553 222 34567788888899998875
No 112
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=100.35 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=70.7
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCC
Q 001309 967 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPL 1046 (1103)
Q Consensus 967 ~l~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~ 1046 (1103)
.-.+|+.++|.+||+.++++..+.++++++.||..|+||||+||.++|++|+..++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 34689999999999999999888889999999999999999999999999999988862
Q ss_pred CCccccccccHHHHHHHHHHhccC
Q 001309 1047 YSSVDVRPLKMDDFKYAHEQVCAS 1070 (1103)
Q Consensus 1047 ~~~~~~r~Lt~eDF~~Ale~v~pS 1070 (1103)
...|+++||..|++++.|.
T Consensus 66 -----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 -----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -----CSEECHHHHHHHHHHHHCC
T ss_pred -----CCCCCHHHHHHHHHHHccC
Confidence 2579999999999998764
No 113
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.93 E-value=2.9e-09 Score=122.78 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=103.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~--- 875 (1103)
.++|.....+.+.+.+.. . ......+||+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK-------I-----SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH-------H-----TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhccHHhhHHHHHHHH-------h-----cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 456666666666665542 1 1223469999999999999999998876 479999999875332
Q ss_pred --cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEE
Q 001309 876 --WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 946 (1103)
Q Consensus 876 --~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIa 946 (1103)
.+|... ....+.|+.|.. ++||||||+.| +...+..+.+++++......|-......++.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 222211 012345666655 89999999998 4445555555555432222222222235789999
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhh
Q 001309 947 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK 986 (1103)
Q Consensus 947 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~~ 986 (1103)
|||.. ..+.+.+.-|+ ..+.+.+|...+|. .++++++.+
T Consensus 278 at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~ 327 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKK 327 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHH
Confidence 99863 34556666676 35667788876664 355555544
No 114
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.92 E-value=2e-09 Score=96.40 Aligned_cols=75 Identities=27% Similarity=0.459 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCC
Q 001309 969 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYS 1048 (1103)
Q Consensus 969 ~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~ 1048 (1103)
++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|+..++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~------------------------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------------------------
Confidence 58999999999999999988888999999999999999999999999999998885
Q ss_pred ccccccccHHHHHHHHHHhcc
Q 001309 1049 SVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1049 ~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
....|+++||..|++++..
T Consensus 57 --~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --TCSEECHHHHHHHHHHHHC
T ss_pred --CCCCCCHHHHHHHHHHHHh
Confidence 1357999999999998764
No 115
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.79 E-value=7.3e-09 Score=93.75 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 001309 972 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1051 (1103)
Q Consensus 972 d~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~ 1051 (1103)
+.++|.+||+.++++..+.+++++..||..|+||||+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 678999999999999888889999999999999999999999999999988752
Q ss_pred cccccHHHHHHHHHHhccCcc
Q 001309 1052 VRPLKMDDFKYAHEQVCASVS 1072 (1103)
Q Consensus 1052 ~r~Lt~eDF~~Ale~v~pS~s 1072 (1103)
..+|+++||..|++++.|+.+
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 257999999999999999976
No 116
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.75 E-value=1.8e-08 Score=115.57 Aligned_cols=164 Identities=23% Similarity=0.318 Sum_probs=101.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccccc----
Q 001309 802 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK---- 875 (1103)
Q Consensus 802 dI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~s~L~s~---- 875 (1103)
+++|.......+.+.+... ......+||+|++||||+.+|+++....+. .|+.++|..+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI------------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccchHHHHHHhhhhhh------------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 4667666666666655421 112246999999999999999999888743 3999999875322
Q ss_pred -cccccH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEe
Q 001309 876 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 947 (1103)
Q Consensus 876 -~~G~~e-------~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaT 947 (1103)
.||... ......|+.|.. ++||||||+.| +...|..+.+++++-....-|-....+.++.+|++
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred HhcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 222110 112235666654 89999999998 44455555555554322222222222356889999
Q ss_pred cCCC-------CCCcHHHHhccccccccCCCCHHHH----HHHHHHHHhh
Q 001309 948 TNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK 986 (1103)
Q Consensus 948 TN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR----~eIL~~ll~~ 986 (1103)
||.. ..+.+.+..|+ ..+.+.+|...+| ..++++++.+
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred cCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHH
Confidence 9863 24556677777 3566777776665 4455666654
No 117
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=2.8e-08 Score=136.72 Aligned_cols=140 Identities=23% Similarity=0.384 Sum_probs=93.8
Q ss_pred CceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEecCccccccccccHHHHHHHHHHH-H--------------hcCCeEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVV 899 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAI-A~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A-~--------------~~~PsIL 899 (1103)
.+++||+||||||||++|+.+ +...+..++.++++...+ ...+...+... . ..++.||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 368999999999999999555 444478888888765432 12334444332 1 1123699
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhHHhhhcCCccc------CCccEEEEEecCCC-----CCCcHHHHhcccccccc
Q 001309 900 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP-----FDLDEAVVRRLPRRLMV 968 (1103)
Q Consensus 900 fIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k------~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~l 968 (1103)
||||++.-...+ .+.+. ...++.+++. ..++... .-.++.+|||+|++ ..++++++||| .++.+
T Consensus 1341 FiDEinmp~~d~--yg~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i 1415 (2695)
T 4akg_A 1341 FCDEINLPKLDK--YGSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYL 1415 (2695)
T ss_dssp EEETTTCSCCCS--SSCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEEC
T ss_pred Eecccccccccc--cCchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEe
Confidence 999998532222 12222 2234444432 2222211 11468999999998 48999999999 78999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 001309 969 NLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 969 ~lPd~eeR~eIL~~ll~~ 986 (1103)
+.|+.+++..|+..++..
T Consensus 1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998865
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.63 E-value=4.7e-08 Score=99.68 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCCcccccCc----HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 001309 797 GVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 868 (1103)
Q Consensus 797 ~~sfddI~G~----e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~ 868 (1103)
..+|+++++. ..+.+.+++++.. .. ..+..+++|+||+|+|||+|+++++..+ |..++.++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------cc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4578887763 3333444443331 11 1234689999999999999999999877 66777777
Q ss_pred cCccccccccccHH-HHHHHHHHHHhcCCeEEEEcccccc
Q 001309 869 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 869 ~s~L~s~~~G~~e~-~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
+.++...+...... ....++. .-..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 76654332110000 0001111 1236799999999743
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.63 E-value=1.5e-07 Score=94.32 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=69.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 911 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r 911 (1103)
+...++|+||+|+|||+|+++++..+ |..++.++..++... +...+|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 34679999999999999999999887 777888888776543 112357899999998762
Q ss_pred CCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc--HHHHhccccccccC
Q 001309 912 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPRRLMVN 969 (1103)
Q Consensus 912 ~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~~I~l~ 969 (1103)
...++.+..+++.+... ...++||++...+..+. +.+.+|+..-..+.
T Consensus 97 --~~~~~~l~~li~~~~~~--------g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 97 --NEEQALLFSIFNRFRNS--------GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp --SHHHHHHHHHHHHHHHH--------TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred --hHHHHHHHHHHHHHHHc--------CCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 22244444555444321 11224444433454333 88999986544443
No 120
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.61 E-value=4.6e-08 Score=114.56 Aligned_cols=153 Identities=19% Similarity=0.142 Sum_probs=93.1
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEe-cCc---cccccc
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINIS-MSS---ITSKWF 877 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAI-A~elg~~fi~v~-~s~---L~s~~~ 877 (1103)
|.|++.+|..|.-.+...... .+...++||.|+||| ||+||+++ ++.+....+... ++. +.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 689999888876655321110 111237999999999 99999999 655433222111 110 111100
Q ss_pred cc-cHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC----
Q 001309 878 GE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---- 952 (1103)
Q Consensus 878 G~-~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~---- 952 (1103)
+. +-..-.+.+..|.. +|+|||||+.+ +...+..+.+.+++-...+.|. .-+.++.||||+|+.+
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 00 00001234455544 89999999987 5556777888887766666665 4457899999999865
Q ss_pred -------CCcHHHHhccccc-cccCCCCHHH
Q 001309 953 -------DLDEAVVRRLPRR-LMVNLPDAPN 975 (1103)
Q Consensus 953 -------~Ld~aLlrRF~~~-I~l~lPd~ee 975 (1103)
.|++++++||+.. +.++.|+.+.
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred CCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 8899999999753 4456676544
No 121
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=98.57 E-value=1.7e-07 Score=94.33 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=72.2
Q ss_pred CCceeeeecccccceeecCCC---------CcccceEEEEeecCCC-ceeEEEEecCcceEEEcCeeecCCceEEeecCC
Q 001309 2 TGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGD 71 (1103)
Q Consensus 2 ~~~~~tvg~~~~~~~~l~d~~---------~~~~~c~l~~~~~~~~-~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gd 71 (1103)
....|+||++..||+.|.|+. ||..+|+|.+...++. ....|+=....| +.|||+.+.++..+.|+.||
T Consensus 46 ~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNG-T~VNg~~i~~~~~~~L~~GD 124 (149)
T 1gxc_A 46 VNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG-TFVNTELVGKGKRRPLNNNS 124 (149)
T ss_dssp CSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSC-EEETTEECCTTCEEECCTTE
T ss_pred CCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCC-eEECCEECCCCCeEECCCCC
Confidence 356799999999999999995 9999999987754221 134555554445 59999999999999999999
Q ss_pred eEEecCCCCcceeeecccccc
Q 001309 72 ELVFSPSGKHSYIFQQLSDDT 92 (1103)
Q Consensus 72 e~~f~~~~~~~yif~~~~~~~ 92 (1103)
+|.||.+....|+|+.+..++
T Consensus 125 ~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 125 EIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp EEEESSTTCEEEEEEETTCC-
T ss_pred EEEECCCCCeEEEEEECCccc
Confidence 999999877899999875544
No 122
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=1.2e-06 Score=97.30 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=112.5
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-----
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 873 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~----- 873 (1103)
..+.++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++.+..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------------~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------------A---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------------S---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CHHHhcChHHHHHHHHH-hc--------------C---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 44578999998888877 53 1 3799999999999999999999987778888875420
Q ss_pred c--ccc------------------------------c---c------cHHHHHHHHHHHHhc--CCeEEEEccccccccC
Q 001309 874 S--KWF------------------------------G---E------GEKYVKAVFSLASKI--APSVVFVDEVDSMLGR 910 (1103)
Q Consensus 874 s--~~~------------------------------G---~------~e~~i~~lF~~A~~~--~PsILfIDEID~L~~~ 910 (1103)
+ ... + . ....+..++...... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 000 0 0 011233444444433 3889999999987431
Q ss_pred CCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc---------HHHHhccccccccCCCCHHHHHHHHH
Q 001309 911 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIR 981 (1103)
Q Consensus 911 r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRF~~~I~l~lPd~eeR~eIL~ 981 (1103)
. .......+ ..+... . .++.+|.|++....+. ..+..|+...+.+.+.+.++..++++
T Consensus 153 ~-~~~~~~~l----~~~~~~---~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R-GVNLLPAL----AYAYDN---L-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T-TCCCHHHH----HHHHHH---C-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C-chhHHHHH----HHHHHc---C-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 1 11122222 222211 1 2466666665432111 11223444678899999999999999
Q ss_pred HHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 001309 982 VILAKEELASDVDLEGIANMADGYSGSDLKNLCVT 1016 (1103)
Q Consensus 982 ~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~ 1016 (1103)
..+.......+ +...+...+.|+.. -+..++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 87764433322 23788889988654 45555443
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.54 E-value=1.5e-07 Score=97.50 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccccc-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~-e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
.+++|+||||||||+||+++++++ +.+++.++++++........ ...+..++.... .+.+|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 689999999999999999999988 67888888876544321110 001122233332 2469999999764
No 124
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=98.48 E-value=1.4e-07 Score=90.75 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=70.2
Q ss_pred CceeeeecccccceeecCC-CCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCC--
Q 001309 3 GAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG-- 79 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~-~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~-- 79 (1103)
...++||++..||+.|.|+ .+|..+|+|..-.++| . ..|+= |+..-+.|||+.+.++..+.|+.||+|.||.+-
T Consensus 23 ~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~-~-~~l~D-~S~NGt~vng~~l~~~~~~~L~~GD~i~~G~~~~~ 99 (116)
T 1lgp_A 23 KREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSG-Q-VTLED-TSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNE 99 (116)
T ss_dssp SSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTC-C-EEEEE-CSSSCCCCCCCCCCCSSCCCCCTTCEEEEECCSSC
T ss_pred CCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCC-e-EEEEE-CCcCCcEECCEEcCCCCcEECCCCCEEEEeccCCC
Confidence 4678999999999999985 9999999998653344 3 34444 776568999999999999999999999999874
Q ss_pred ---Ccceeeeccccc
Q 001309 80 ---KHSYIFQQLSDD 91 (1103)
Q Consensus 80 ---~~~yif~~~~~~ 91 (1103)
..+|+|+.+..+
T Consensus 100 ~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 100 PEHNVAYLYESLSEK 114 (116)
T ss_dssp GGGCEEEECCCSCC-
T ss_pred CCceEEEEEEccccc
Confidence 678999976543
No 125
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.45 E-value=2.7e-06 Score=94.29 Aligned_cols=188 Identities=18% Similarity=0.146 Sum_probs=111.3
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-----
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 873 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~----- 873 (1103)
.-+.++|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~-----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y-----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C-----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C-----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 345689999999999887641 1 4799999999999999999999886 6666654321
Q ss_pred -------c---ccc-------------------------cccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhH
Q 001309 874 -------S---KWF-------------------------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE 918 (1103)
Q Consensus 874 -------s---~~~-------------------------G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~ 918 (1103)
. ... ......+..+...+....|.+|+|||++.+..... .....
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~ 150 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKE 150 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cchhh
Confidence 0 000 01112222233333333489999999998842100 00111
Q ss_pred HHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCc---------HHHHhccccccccCCCCHHHHHHHHHHHHhhccc
Q 001309 919 AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 989 (1103)
Q Consensus 919 ~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l 989 (1103)
....+..+... . .++.+|.|+.....+. ..+..|+...+.+.+.+.++-.++++..+.....
T Consensus 151 -~~~~L~~~~~~---~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 151 -LLALFAYAYDS---L-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp -HHHHHHHHHHH---C-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHh---c-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 12222222211 1 2456666654321111 1122344457888999999999999887765433
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 990 A-SDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 990 ~-~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
. ++..+..+...+.|+.. -+..++.
T Consensus 222 ~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp CCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 2 44567788888888654 4555544
No 126
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.40 E-value=9.8e-08 Score=87.39 Aligned_cols=75 Identities=8% Similarity=-0.043 Sum_probs=60.2
Q ss_pred chhhhhcccchhHHHHHhhhCCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHH
Q 001309 678 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 757 (1103)
Q Consensus 678 ~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~ 757 (1103)
+.||.++|.+||++|++.+... ++++++.||..|.||+||||+.+|++|+..|+.+.. ..+...
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~---------------~~I~~~ 72 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQE 72 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC---------------SEECHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC---------------CCCCHH
Confidence 5799999999999997633222 689999999999999999999999999999998541 245677
Q ss_pred HHHhhhhhhhh
Q 001309 758 ILQGIQSESKS 768 (1103)
Q Consensus 758 df~~a~~eik~ 768 (1103)
+|..++..+++
T Consensus 73 df~~Al~~v~p 83 (86)
T 2krk_A 73 DFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcc
Confidence 88777665543
No 127
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.40 E-value=7.3e-08 Score=87.20 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccc
Q 001309 974 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVR 1053 (1103)
Q Consensus 974 eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~~l~~~~~~~~~~~~~~~~~r 1053 (1103)
++|.+||+.++++..+.+++++..||..|+||||+||.++|++|+..++++. ..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--------------------------~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--------------------------RY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--------------------------CS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------cC
Confidence 4789999999999888889999999999999999999999999999988851 24
Q ss_pred cccHHHHHHHHHHhc
Q 001309 1054 PLKMDDFKYAHEQVC 1068 (1103)
Q Consensus 1054 ~Lt~eDF~~Ale~v~ 1068 (1103)
.|+++||..|++++.
T Consensus 55 ~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 55 VILQSDLEEAYATQV 69 (82)
T ss_dssp EECHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHH
Confidence 699999999999985
No 128
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=98.39 E-value=7.7e-07 Score=87.62 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=65.7
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEe--------ecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEE
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRI--------ENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELV 74 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~--------~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~ 74 (1103)
.+.||||++..||+.|.|+++|..+|.|.+- ...+.. -.|+=.||.-=..|||+.+.++..+.|+.||+|.
T Consensus 40 ~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~-~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~ 118 (130)
T 4h87_A 40 TSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPG-FYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVR 118 (130)
T ss_dssp CSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CC-EEEEECSCSSCEEETTEECCTTCCEECCTTCEEE
T ss_pred CceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCc-ceEeeCCCCCceEECCEECCCCceeECCCCCEEE
Confidence 3678999999999999999999999999642 122233 4455566655589999999999999999999999
Q ss_pred ecCCCCcceeee
Q 001309 75 FSPSGKHSYIFQ 86 (1103)
Q Consensus 75 f~~~~~~~yif~ 86 (1103)
||.+-+ .||||
T Consensus 119 ~G~str-~yvl~ 129 (130)
T 4h87_A 119 FGGSTR-LFILQ 129 (130)
T ss_dssp ETTCSE-EEEEE
T ss_pred ECCceE-EEEEc
Confidence 998866 58887
No 129
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.28 E-value=4.2e-07 Score=102.16 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=66.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 913 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~--~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~ 913 (1103)
...++|+||||+|||+||.++|...+. .|+.+...+..+.+....+..+..++....+.. +||||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 345899999999999999999987654 456653233333333445666666776666654 9999999998543322
Q ss_pred C----chhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcH
Q 001309 914 P----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 956 (1103)
Q Consensus 914 ~----~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 956 (1103)
. .....+++++..|...... .++.+|+++|+ ...++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp-~s~de 240 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP-TSNDD 240 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHH------HTCEEEEECCC-SSCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC-cccch
Confidence 0 0122344444444433321 34678888884 34443
No 130
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.27 E-value=8.6e-07 Score=93.32 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=78.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEecCccccccc----------cccHH--HHHHHHHHH--Hh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE--------AG-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 893 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e--------lg-~~fi~v~~s~L~s~~~----------G~~e~--~i~~lF~~A--~~ 893 (1103)
.-.|++|+||||||++|.+++.. .| .+++..++..+....+ ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36899999999999999886544 24 6676777665543221 11000 012233321 22
Q ss_pred cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCH
Q 001309 894 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDA 973 (1103)
Q Consensus 894 ~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~ 973 (1103)
...+||+|||++.+++.+.... +. .+++..+. . .....+-||.+|+++..|+..+++|+...+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~-~rll~~l~----~---~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KI-PENVQWLN----T---HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CC-CHHHHGGG----G---TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccc--hh-HHHHHHHH----h---cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 3468999999999986552211 11 12222222 1 1224456777888899999999999988888877654
Q ss_pred H
Q 001309 974 P 974 (1103)
Q Consensus 974 e 974 (1103)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.26 E-value=3.4e-07 Score=81.81 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=58.2
Q ss_pred chhhhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhH
Q 001309 678 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 756 (1103)
Q Consensus 678 ~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~ 756 (1103)
|+||.++|.+|+++|++ ..++ ++++++.||..|.||+|+||+.+|++|+..++.+.. ..+..
T Consensus 1 plPd~~~R~~Il~~~l~--~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSR--KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHT--TSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------------SEECH
T ss_pred CcCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------------CCCCH
Confidence 68999999999999965 3333 688999999999999999999999999999998521 23456
Q ss_pred HHHHhhhhhh
Q 001309 757 NILQGIQSES 766 (1103)
Q Consensus 757 ~df~~a~~ei 766 (1103)
.+|..++.++
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665444
No 132
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.26 E-value=3.4e-06 Score=116.51 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=95.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
.++++.||+|||||.+++++|+.+|.+++.++|.+-.. ...+..+|..+.... +++++||++++ ....
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc-----ChHH
Confidence 57899999999999999999999999999999987443 245677777776544 89999999987 3222
Q ss_pred hHHHHHHHHhHHhhh---------cCCcccCCccEEEEEecCC----CCCCcHHHHhccccccccCCCCHHHHHHHHH
Q 001309 917 HEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 981 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~l---------dgl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~ 981 (1103)
...+...+..+...+ .|..-.-+.++.|++|.|+ ...|++++++|| +.+.+..|+.+...+|+-
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 333322222222222 1211222456788889884 457999999999 789999999988877753
No 133
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=98.23 E-value=4.3e-06 Score=84.20 Aligned_cols=84 Identities=29% Similarity=0.484 Sum_probs=64.6
Q ss_pred ceeeeecccccceeecCCCCcccceEEEEee---c--CCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCC
Q 001309 4 AVFTVGHNRQCDLYLKDPSISKNLCRLRRIE---N--GGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS 78 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~---~--~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~ 78 (1103)
..+|||++..||+.|.|+.||...|+|...+ . .+.. ..|+=....| +.|||+.+.++ .+.|+.||+|.||.+
T Consensus 38 ~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~-~~l~DlS~NG-T~VNg~~i~~~-~~~L~~GD~I~lG~~ 114 (151)
T 2jqj_A 38 NVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNL-INVIDKSRNG-TFINGNRLVKK-DYILKNGDRIVFGKS 114 (151)
T ss_dssp SCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEE-EEEEECCSSC-EEETTEECCSS-CEEECSSEEEEETTT
T ss_pred CeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCE-EEEEECCCCC-eEECCEEcCCC-ceECCCCCEEEECCC
Confidence 6799999999999999999999999999742 0 1222 4455553333 79999999998 999999999999873
Q ss_pred CCcceeeecccccc
Q 001309 79 GKHSYIFQQLSDDT 92 (1103)
Q Consensus 79 ~~~~yif~~~~~~~ 92 (1103)
..|+|.-.....
T Consensus 115 --~~~~f~~~~~~~ 126 (151)
T 2jqj_A 115 --CSFLFKYASSSS 126 (151)
T ss_dssp --EEEEEEECSSCC
T ss_pred --cEEEEEEcCCCc
Confidence 357777544333
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.18 E-value=1.4e-06 Score=97.51 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=45.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccccccccc-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~s~~~G~~-e~~i~~lF~~A~~~~PsILfIDEID~L 907 (1103)
..+++|+||||||||+||.++|+++ +.+++.++++++........ ......++.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999865 47888888876554322110 111112222222 3579999999654
No 135
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.13 E-value=1.3e-06 Score=80.16 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=56.8
Q ss_pred hhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHH
Q 001309 681 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 759 (1103)
Q Consensus 681 d~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df 759 (1103)
|.++|.+|++||++. .++ ++++++.||..|.||+||||+.+|++|+..|+.+... .+...||
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~---------------~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS---------------SBCHHHH
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc---------------cCCHHHH
Confidence 467899999999753 334 6899999999999999999999999999999986432 2567788
Q ss_pred Hhhhhhhh
Q 001309 760 QGIQSESK 767 (1103)
Q Consensus 760 ~~a~~eik 767 (1103)
..+...+.
T Consensus 65 ~~Al~~v~ 72 (88)
T 3vlf_B 65 LKAVDKVI 72 (88)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 87766554
No 136
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.12 E-value=7.5e-06 Score=82.82 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=63.0
Q ss_pred Cceeeeeccc---ccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCC
Q 001309 3 GAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 79 (1103)
Q Consensus 3 ~~~~tvg~~~---~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~ 79 (1103)
....+||+.. .||+.|.|+.||..+|.|..-..++....++.-.++..-+.|||+.+.+ .+.|+.||+|.||.+
T Consensus 60 ~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~--~~~L~~GD~I~~G~~- 136 (154)
T 4ejq_A 60 DGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTE--PSILRSGNRIIMGKS- 136 (154)
T ss_dssp SEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCS--CEECCTTCEEEETTT-
T ss_pred CCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCC--ceECCCCCEEEECCc-
Confidence 3467999965 7999999999999999999765554433445555555559999999965 679999999999743
Q ss_pred Ccceeeec
Q 001309 80 KHSYIFQQ 87 (1103)
Q Consensus 80 ~~~yif~~ 87 (1103)
|-|.|..
T Consensus 137 -~~Frf~~ 143 (154)
T 4ejq_A 137 -HVFRFNH 143 (154)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEcC
Confidence 5677764
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.11 E-value=7.5e-06 Score=90.04 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=76.1
Q ss_pred CCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhhcccCC
Q 001309 556 SPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 629 (1103)
Q Consensus 556 ~p~Ilf~~d~e~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~p 629 (1103)
.+.||||||++.+.. ...+..+.|...|+.-..+++||++++..+- +.+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-------------------~~~~----- 185 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-------------------ENFF----- 185 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-------------------HHHH-----
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-------------------HHHH-----
Confidence 456999999999543 2567777888888888889999999883100 0000
Q ss_pred CCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccchhHHHHHhhhCCCCccchhhhh
Q 001309 630 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLC 709 (1103)
Q Consensus 630 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~La 709 (1103)
.....|..+|+..|.+++|+++.+...|+..+..- ...++...++.++
T Consensus 186 --------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~------------------~~~~~~~~~~~l~ 233 (309)
T 3syl_A 186 --------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ------------------NYQMTPEAETALR 233 (309)
T ss_dssp --------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT------------------TCEECHHHHHHHH
T ss_pred --------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc------------------CCCCCHHHHHHHH
Confidence 11134566788888888888888776555443320 0111222223333
Q ss_pred hc------cCCCC-HHHHHHHHhhhhhhcccccc
Q 001309 710 IK------DQTLT-TEGVEKIVGWALSHHFMHCS 736 (1103)
Q Consensus 710 ~~------tkg~s-gadI~~Lv~~A~s~al~r~~ 736 (1103)
.. +..++ +.++..++..|...+..+..
T Consensus 234 ~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 234 AYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 67888888888776665543
No 138
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.07 E-value=2.3e-06 Score=77.25 Aligned_cols=71 Identities=11% Similarity=0.028 Sum_probs=57.1
Q ss_pred hhhcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHH
Q 001309 681 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 759 (1103)
Q Consensus 681 d~~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df 759 (1103)
|.++|.+|+++|++. .++ ++++++.||..|.||+||||+.+|++|+..++.+.. ..+...+|
T Consensus 2 d~~~R~~Il~~~l~~--~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSK--MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR---------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTT--SCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC---------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHH
Confidence 457899999999753 333 688999999999999999999999999999987542 23567788
Q ss_pred Hhhhhhhhh
Q 001309 760 QGIQSESKS 768 (1103)
Q Consensus 760 ~~a~~eik~ 768 (1103)
..+...++|
T Consensus 65 ~~Al~~~~p 73 (83)
T 3aji_B 65 EKAYKTVIK 73 (83)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcc
Confidence 877766655
No 139
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=98.02 E-value=1.1e-05 Score=75.44 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=61.3
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
...++||++..||+.|.|+.+|..+|+|..- +|. ..|+=.|+..-+.|||+.+. .+.|+.||+|.||. ..
T Consensus 22 ~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~iG~---~~ 91 (100)
T 3po8_A 22 EGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIRLGH---SE 91 (100)
T ss_dssp SEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCCEETTEECS---EEECCTTCEEEETT---EE
T ss_pred CCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCEEECCEECc---eEECCCCCEEEECC---EE
Confidence 4569999999999999999999999999963 333 67888887656999999987 58999999999976 35
Q ss_pred eeee
Q 001309 83 YIFQ 86 (1103)
Q Consensus 83 yif~ 86 (1103)
+.|+
T Consensus 92 ~~~~ 95 (100)
T 3po8_A 92 IIVR 95 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 140
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=98.02 E-value=9.6e-06 Score=82.85 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=64.5
Q ss_pred ceeeeecccccceeecCC-CCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCC---
Q 001309 4 AVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG--- 79 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~-~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~--- 79 (1103)
..++||++..||+.|.|+ .+|..+|+|.+-+.| . ..|+=+ +..-+.|||+.+.++..+.|+.||+|.||.+.
T Consensus 64 ~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g-~--~~l~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~ 139 (164)
T 1g3g_A 64 KVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG-N--LLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESD 139 (164)
T ss_dssp EEEEEESSSSSSEECCCCTTTTSSCEEEEECSTT-C--EEEEEC-CSSCEEETTEEECTTEEEECCTTCEEEESCSSTTS
T ss_pred CcEEECCCCCCCEEeCCcCCcChhHEEEEECCCC-C--EEEEEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCCCCCC
Confidence 378999999999999998 599999999864333 2 345555 44347999999999999999999999999974
Q ss_pred Ccceeeec
Q 001309 80 KHSYIFQQ 87 (1103)
Q Consensus 80 ~~~yif~~ 87 (1103)
.-.|+|..
T Consensus 140 ~~~f~~~~ 147 (164)
T 1g3g_A 140 ILSLVIFI 147 (164)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEEe
Confidence 34677764
No 141
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.01 E-value=9.8e-06 Score=78.07 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=65.4
Q ss_pred ceeeeecc-cccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 4 AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 4 ~~~tvg~~-~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
..++||+. ..||+.|.|+.+|..+|+|..- ++. ..|+=.|+.--+.|||+.+.++..+.|+.||+|.||.. .
T Consensus 33 ~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGT~vng~~l~~~~~~~L~~gd~i~lG~~---~ 105 (118)
T 1uht_A 33 STIRVGRIVRGNEIAIKDAGISTKHLRIESD--SGN--WVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEY---T 105 (118)
T ss_dssp CCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SSS--EEEECCCCSSCCEESSSBCCTTCEEECCTTEEEEETTT---E
T ss_pred CEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--CCE--EEEEECCCCCCeEECCEECCCCCeEEcCCCCEEEECCe---E
Confidence 46899999 8999999999999999999953 332 67888887766899999999999999999999999765 4
Q ss_pred eeeecc
Q 001309 83 YIFQQL 88 (1103)
Q Consensus 83 yif~~~ 88 (1103)
++|..+
T Consensus 106 ~~~~~~ 111 (118)
T 1uht_A 106 SILVNF 111 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555544
No 142
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=97.98 E-value=1.8e-05 Score=78.52 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=67.2
Q ss_pred CceeeeecccccceeecCCC----CcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCC
Q 001309 3 GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS 78 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~----~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~ 78 (1103)
...+|||++..||+.|.|+. +|..+|+|...+ +|. ..|+=.|+.--+.|||+.+.++..+.|+.||+|.||.+
T Consensus 27 ~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~~ 103 (138)
T 2pie_A 27 GCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVP 103 (138)
T ss_dssp TCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TSC--EEEEECSCSSCEEETTEECCTTCCEECCTTCEEEESCC
T ss_pred CCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CCc--EEEEECCCCCCeEECCEEcCCCCcEECCCCCEEEECCC
Confidence 45689999999999999999 999999998643 332 56777877666899999999999999999999999985
Q ss_pred --C--Ccceeeec
Q 001309 79 --G--KHSYIFQQ 87 (1103)
Q Consensus 79 --~--~~~yif~~ 87 (1103)
+ ...|.|+.
T Consensus 104 ~~~~~~~~f~~~~ 116 (138)
T 2pie_A 104 LENKENAEYEYEV 116 (138)
T ss_dssp CTTCSSCSEEEEE
T ss_pred CCCCceEEEEEEe
Confidence 2 23455554
No 143
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=97.98 E-value=1.5e-05 Score=78.55 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=61.3
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeec-CCCceeEEEEe-----cCcceEEEcCeeecCCceEEeecCCeEEec
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGPSGALLEIT-----GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 76 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~-~~~~~a~le~~-----g~~~~v~vng~~~~~~~~~~l~~gde~~f~ 76 (1103)
...+|||++..||+.|.|+.+|...|+|..... .|.....|+=. |+.--+.|||+.+.+ +.|+.||+|.||
T Consensus 29 ~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg~~i~~---~~L~~GD~I~iG 105 (131)
T 3hx1_A 29 ETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKKVQE---HIIQTGDEIVMG 105 (131)
T ss_dssp SSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETTEEESE---EECCTTCEEECS
T ss_pred CCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECCEEeEe---EECCCCCEEEEC
Confidence 457999999999999999999999999986532 23323556666 566558999999986 999999999997
Q ss_pred CCCCcceeeecc
Q 001309 77 PSGKHSYIFQQL 88 (1103)
Q Consensus 77 ~~~~~~yif~~~ 88 (1103)
.. .++|.++
T Consensus 106 ~~---~~~~~~~ 114 (131)
T 3hx1_A 106 PQ---VSVRYEY 114 (131)
T ss_dssp TT---CEEEEEE
T ss_pred CE---EEEEEEE
Confidence 65 4455544
No 144
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=1.5e-05 Score=84.26 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
+++||+||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865543
No 145
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=97.96 E-value=2e-05 Score=75.65 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=63.2
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
...++||++..||+.|.|+.+|..+|+|... ++. ..|+=.|+.--+.|||+.+. .+.|+.||+|.||. ..
T Consensus 30 ~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~iG~---~~ 99 (115)
T 2xt9_B 30 QPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GGE--FQVVDVGSLNGTYVNREPVD---SAVLANGDEVQIGK---FR 99 (115)
T ss_dssp SSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TTE--EEEEECSCSSCEEETTEECS---EEEECTTCEEEETT---EE
T ss_pred CCCEEECCCCCCCEEeCCcccChhheEEEEE--CCE--EEEEECCCCCCeEECCEEcc---eEECCCCCEEEECC---EE
Confidence 4578999999999999999999999999974 332 67888887767899999997 58999999999975 46
Q ss_pred eeeeccc
Q 001309 83 YIFQQLS 89 (1103)
Q Consensus 83 yif~~~~ 89 (1103)
+.|+..+
T Consensus 100 l~~~~~~ 106 (115)
T 2xt9_B 100 LVFLTGP 106 (115)
T ss_dssp EEEEC--
T ss_pred EEEEeCC
Confidence 7776443
No 146
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=97.96 E-value=1.1e-05 Score=78.80 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=64.9
Q ss_pred CCceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCc
Q 001309 2 TGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKH 81 (1103)
Q Consensus 2 ~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~ 81 (1103)
....++||++..||+.|.|+.+|..+|+|... +|. ..|+=.|+..-+.|||+.+.+ .+.|+.||+|.|| .+
T Consensus 31 ~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vNg~~i~~--~~~L~~Gd~i~iG---~~ 101 (128)
T 1r21_A 31 SLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH--EQE--AILHNFSSTNPTQVNGSVIDE--PVRLKHGDVITII---DR 101 (128)
T ss_dssp CSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEECCCCSSSCCEETTEECSS--CEECCTTEEEECS---SC
T ss_pred CCCCEEECCCCCCCEEECCCCCChhHEEEEEE--CCE--EEEEECCCCCCEEECCEECCC--cEEcCCCCEEEEC---CE
Confidence 34679999999999999999999999999964 332 678888876668999999985 7899999999997 45
Q ss_pred ceeeecc
Q 001309 82 SYIFQQL 88 (1103)
Q Consensus 82 ~yif~~~ 88 (1103)
.+.|...
T Consensus 102 ~~~~~~~ 108 (128)
T 1r21_A 102 SFRYENE 108 (128)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7777754
No 147
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.6e-05 Score=80.80 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=68.4
Q ss_pred Cceeeeeccc---------------ccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEe
Q 001309 3 GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVL 67 (1103)
Q Consensus 3 ~~~~tvg~~~---------------~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l 67 (1103)
.+.|+||+.. .||+.|.|+++|..+|.|..-..+|.....|+=+||.-=..|||+.+.++..+.|
T Consensus 55 ~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L 134 (158)
T 3els_A 55 RSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIEL 134 (158)
T ss_dssp CSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEECCTTCCEEC
T ss_pred CCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEEcCCCceEEc
Confidence 4579999984 5999999999999999998765544444567777766557999999999999999
Q ss_pred ecCCeEEecCCC---Ccceeee
Q 001309 68 RGGDELVFSPSG---KHSYIFQ 86 (1103)
Q Consensus 68 ~~gde~~f~~~~---~~~yif~ 86 (1103)
+.||+|.||.+. .+-++|.
T Consensus 135 ~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 135 RSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp CTTEEEESSSCGGGCCEEEEEE
T ss_pred CCCCEEEECCCCCCCCEEEEEE
Confidence 999999999875 4555554
No 148
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=97.94 E-value=2.3e-05 Score=76.61 Aligned_cols=80 Identities=28% Similarity=0.356 Sum_probs=63.9
Q ss_pred ceeeeecccccceeecCC-CCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCC---
Q 001309 4 AVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG--- 79 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~-~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~--- 79 (1103)
..+|||++..||+.|.|+ .+|..+|+|...+.| . ..|+=+...| +.|||+.+.++..+.|+.||+|.||...
T Consensus 36 ~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g--~-~~l~DlS~NG-T~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~ 111 (127)
T 1g6g_A 36 KVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG--N-LLLNDISTNG-TWLNGQKVEKNSNQLLSQGDEITVGVGVESD 111 (127)
T ss_dssp EEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS--C-EEEEECCSSC-CEETTEECCTTCCEECCTTCEEEECTTSGGG
T ss_pred CCEEECCCCCCCEEeCCCCCCChhHeEEEECCCC--c-EEEEECCcCC-eEECCEEcCCCCeEEcCCCCEEEECCCccCc
Confidence 479999999999999998 599999999865333 2 4455554344 7999999999999999999999999875
Q ss_pred Ccceeeec
Q 001309 80 KHSYIFQQ 87 (1103)
Q Consensus 80 ~~~yif~~ 87 (1103)
.-.|+|+.
T Consensus 112 ~i~f~~~~ 119 (127)
T 1g6g_A 112 ILSLVIFI 119 (127)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEe
Confidence 22577764
No 149
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=97.94 E-value=1.4e-05 Score=79.83 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=63.2
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
...++||++..||+.|.|+.+|..+|+|.+. +|. ..|+=.|+.--++|||+.+. .+.|+.||+|.||. ..
T Consensus 65 ~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~~--~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~iG~---~~ 134 (143)
T 2kb3_A 65 QPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EGE--FEVVDVGSLNGTYVNREPRN---AQVMQTGDEIQIGK---FR 134 (143)
T ss_dssp SSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TTE--EEEEESCCSSCCEETTEECS---EEECCTTEEEEETT---EE
T ss_pred CCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CCE--EEEEECCCcCCeEECCEEcc---eEECCCCCEEEECC---EE
Confidence 3578999999999999999999999999973 332 67888887766899999997 58999999999965 56
Q ss_pred eeeecc
Q 001309 83 YIFQQL 88 (1103)
Q Consensus 83 yif~~~ 88 (1103)
+.|+..
T Consensus 135 l~f~~~ 140 (143)
T 2kb3_A 135 LVFLAG 140 (143)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777643
No 150
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.89 E-value=5.4e-06 Score=97.13 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred hhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCCC
Q 001309 314 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 384 (1103)
Q Consensus 314 e~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~~g 384 (1103)
++.|..|..|.+-|+++..+....+ .....+.|||.||+|| -..+||||||+.++++++.+|.+.+..
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGt--GKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCC--CHHHHHHHHHHHcCCCceeecchhhcc
Confidence 8899999999998888766533211 1123467999999999 699999999999999999999876544
No 151
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=97.87 E-value=1.9e-05 Score=78.99 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=62.5
Q ss_pred CceeeeecccccceeecCCC----CcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCC
Q 001309 3 GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS 78 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~----~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~ 78 (1103)
...++||++..||+.|.|+. ||..+|+|...+ +|. ..|+=.|+.--+.|||+.+.++..+.|+.||+|.||.+
T Consensus 35 ~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 35 GCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVP 111 (145)
T ss_dssp TCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TSC--EEEEBSSCSSCEEESSCBCCBTCCEECCSSCCEEESCC
T ss_pred CCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CCe--EEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCC
Confidence 45789999999999999999 999999998643 332 55666777656899999999999999999999999985
No 152
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=97.86 E-value=1.3e-05 Score=79.76 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=65.6
Q ss_pred ceeeeecccc-cceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 4 AVFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 4 ~~~tvg~~~~-~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
..++||++.. ||+.|.|+.+|..+|+|..-...+. ..|+=.|+.--+.|||+.+.++..+.|+.||+|.||..-. .
T Consensus 55 ~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G~~~~-~ 131 (140)
T 2jpe_A 55 KYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKR--VFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR-A 131 (140)
T ss_dssp SBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCC--EEEECCSCSSCEESSSCEECSSSCCEECTTCCBBCSSCCC-C
T ss_pred CeEEecCCCccCCEEeCCCCcChhheEEEEECCCCc--EEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCceE-E
Confidence 3589999998 9999999999999999986532232 5677777776689999999998899999999999988754 3
Q ss_pred eeee
Q 001309 83 YIFQ 86 (1103)
Q Consensus 83 yif~ 86 (1103)
|+++
T Consensus 132 f~~~ 135 (140)
T 2jpe_A 132 YTLR 135 (140)
T ss_dssp BCCB
T ss_pred EEEe
Confidence 5554
No 153
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=97.86 E-value=3.8e-05 Score=74.27 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=63.3
Q ss_pred Cceeeeec--ccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCC
Q 001309 3 GAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGK 80 (1103)
Q Consensus 3 ~~~~tvg~--~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~ 80 (1103)
...++||+ +..||+.|.|+.+|...|.|..- +|. ..|+=.|+..-+.|||+.+.+ .+.|+.||+|.||..
T Consensus 35 ~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~dl~S~ngt~vNg~~i~~--~~~L~~GD~I~iG~~-- 106 (120)
T 1wln_A 35 LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGV--VTVTPRSMDAETYVDGQRISE--TTMLQSGMRLQFGTS-- 106 (120)
T ss_dssp SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSC--EEEEESCSSSCEEETSCBCSS--CEEECTTCEEEETTT--
T ss_pred CCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CCE--EEEEECCCCCCEEECCEEcCC--CEECCCCCEEEECCc--
Confidence 34689996 46999999999999999999863 333 678888877779999999984 689999999999863
Q ss_pred cceeeec
Q 001309 81 HSYIFQQ 87 (1103)
Q Consensus 81 ~~yif~~ 87 (1103)
|.|.|..
T Consensus 107 ~~~~f~~ 113 (120)
T 1wln_A 107 HVFKFVD 113 (120)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 5677763
No 154
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=97.83 E-value=5.4e-05 Score=77.22 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=63.4
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
...++||++..||+.|.|+.+|..+|+|.+. +|. ..|+=.|+.--++|||+.+. .+.|+.||+|.||. +.
T Consensus 74 ~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~~--~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~iG~---~~ 143 (162)
T 2kfu_A 74 QAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NNE--FNVVDVGSLNGTYVNREPVD---SAVLANGDEVQIGK---FR 143 (162)
T ss_dssp SSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TTE--EEEECCCCSSCEEETTBCCS---EEECCSSCEEEETT---EE
T ss_pred CCCEEECCCCCCCEEECCCCcChhhEEEEEE--CCE--EEEEECCCCCCeEECCEEcc---eEECCCCCEEEECC---EE
Confidence 4679999999999999999999999999974 332 67888887766899999987 58999999999965 46
Q ss_pred eeeecc
Q 001309 83 YIFQQL 88 (1103)
Q Consensus 83 yif~~~ 88 (1103)
+.|+.-
T Consensus 144 l~f~~~ 149 (162)
T 2kfu_A 144 LVFLTG 149 (162)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 677643
No 155
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=97.83 E-value=3e-05 Score=76.96 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=65.6
Q ss_pred ceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecC--------CceEEeecCCeEEe
Q 001309 4 AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK--------DSQVVLRGGDELVF 75 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~--------~~~~~l~~gde~~f 75 (1103)
..++||++..||+.|.|+.+|..+|+|..-..++ ...|+=.|+.--+.|||+.+.+ +..+.|+.||+|.|
T Consensus 32 ~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~DlgS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 32 LPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKF--KWELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp CSEEEESSSSCSEECCCTTSSSEEEEEEEETTTT--EEEEEETTCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred ceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCC--EEEEEECCCCCCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 3689999999999999999999999999653322 2567778876668999999985 77899999999999
Q ss_pred cCCCCcceeeecc
Q 001309 76 SPSGKHSYIFQQL 88 (1103)
Q Consensus 76 ~~~~~~~yif~~~ 88 (1103)
|.. .++|..+
T Consensus 110 G~~---~~~~~~~ 119 (139)
T 1mzk_A 110 GTT---TKVYVRI 119 (139)
T ss_dssp SSS---CEEEEEE
T ss_pred CCE---EEEEEEc
Confidence 754 5666654
No 156
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=97.82 E-value=3e-05 Score=78.68 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=61.6
Q ss_pred eeeeecccccceeecCCCCcccceEEEEeec-CC-----------CceeEEEEecCcceEEEcCeeecCCceEEeecCCe
Q 001309 5 VFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GG-----------PSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 72 (1103)
Q Consensus 5 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~-~~-----------~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde 72 (1103)
.++||++..||+.|.|+.+|..+|+|..... .| ..+-+-. ....| +.|||+.+.++..+.|+.||+
T Consensus 28 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~D-lStNG-T~VNg~ri~~~~~~~L~~GD~ 105 (158)
T 1dmz_A 28 PFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCH-TGTNV-SYLNNNRMIQGTKFLLQDGDE 105 (158)
T ss_dssp CEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEE-CSTTC-CEETTEECCSSEEEECCSSCC
T ss_pred eEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEE-CCcCC-eEECCEEcCCCceEEcCCCCE
Confidence 4999999999999999999999999986541 11 2334444 44444 699999999999999999999
Q ss_pred EEecCC--CCcceeee
Q 001309 73 LVFSPS--GKHSYIFQ 86 (1103)
Q Consensus 73 ~~f~~~--~~~~yif~ 86 (1103)
|.|+.. |...+.|.
T Consensus 106 I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 106 IKIIWDKNNKFVIGFK 121 (158)
T ss_dssp EESCCCTTTTCCCCEE
T ss_pred EEEeecCCCCEEEEEE
Confidence 999433 44455555
No 157
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.81 E-value=3.7e-05 Score=107.11 Aligned_cols=139 Identities=21% Similarity=0.359 Sum_probs=88.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccccccccHHHHHHHHHHH----Hh------------cCCeEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVV 899 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A----~~------------~~PsIL 899 (1103)
+++||+||||||||++++.....+ +.+++.++++.-.+ ...+.+.++.. .+ .+..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 579999999999998876654444 66778888765332 23334444321 00 112599
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcc------cCCccEEEEEecCCC-----CCCcHHHHhcccccccc
Q 001309 900 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMV 968 (1103)
Q Consensus 900 fIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~------k~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~l 968 (1103)
||||++.- ....-+.+. ...++.+++.. .++.. ..-.++.+|||+|++ ..++++++||| .++.+
T Consensus 1379 FiDDiNmp--~~D~yGtQ~-~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQR-VITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EETTTTCC--CCCTTSCCH-HHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EecccCCC--Ccccccccc-HHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 99999843 222222222 22333444322 11111 112568899999987 47999999999 56999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 001309 969 NLPDAPNREKIIRVILAK 986 (1103)
Q Consensus 969 ~lPd~eeR~eIL~~ll~~ 986 (1103)
+.|+.++...|+..++..
T Consensus 1454 ~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998877654
No 158
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=97.81 E-value=5.3e-05 Score=73.97 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=56.7
Q ss_pred eeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCC
Q 001309 5 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS 78 (1103)
Q Consensus 5 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~ 78 (1103)
..+||+...||+.|.|+.|+...|.|...+ +|. ..|+-.++. -+.|||+.+.+ .+.|+.||.|.||..
T Consensus 49 ~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g~--~~l~dl~~n-gt~VNG~~V~~--~~~L~~GD~I~lG~~ 116 (124)
T 3fm8_A 49 HTLIGSANSQDIQLCGMGILPEHCIIDITS-EGQ--VMLTPQKNT-RTFVNGSSVSS--PIQLHHGDRILWGNN 116 (124)
T ss_dssp EEEEESSTTCSEECCSTTCCSSCEEEEECT-TSC--EEEEECTTC-CEEETTEECCS--CEEECTTCEEEETTT
T ss_pred CeEECCCCCCCEEECCCCeecceEEEEECC-CCe--EEEEECCCC-CEEECCEEcCC--cEECCCCCEEEECCC
Confidence 469999999999999999999999998543 332 467777754 49999999985 689999999999864
No 159
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=97.80 E-value=3.1e-05 Score=76.43 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=64.2
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCee--ecCCceEEeecCCeEEecCCCC
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNV--HPKDSQVVLRGGDELVFSPSGK 80 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~--~~~~~~~~l~~gde~~f~~~~~ 80 (1103)
...+|||++..||+.|.|+.+|...|+|.....++. ..|+=.|+.--+.|||+. +.++..+.|+.||+|.||..
T Consensus 44 ~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT~vNg~~i~l~~~~~~~L~~GD~I~lG~~-- 119 (132)
T 3va4_A 44 LGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILFADF-- 119 (132)
T ss_dssp SEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCEEETTTTEEECTTCCEECCTTCEEEETTE--
T ss_pred CCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCeEECCEEcccCCCCEEECCCCCEEEECCE--
Confidence 346899999999999999999999999996544443 456667766559999998 67778899999999999754
Q ss_pred cceeeec
Q 001309 81 HSYIFQQ 87 (1103)
Q Consensus 81 ~~yif~~ 87 (1103)
.+.|..
T Consensus 120 -~l~f~~ 125 (132)
T 3va4_A 120 -PCQYHR 125 (132)
T ss_dssp -EEEEEE
T ss_pred -EEEEEE
Confidence 455554
No 160
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.79 E-value=3.3e-05 Score=83.86 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 342 TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 342 ~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
...+.|||+||+|| .+.+||+|+|+..+.+++.++.
T Consensus 62 ~~~~~vLl~G~~Gt--GKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPHS--GKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTTS--SHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCCC--cHHHHHHHHHHHhCCCEEEEeC
Confidence 34568999999999 6999999999998888777764
No 161
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=97.78 E-value=4.4e-05 Score=72.16 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=60.8
Q ss_pred ceeeeeccc-ccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 4 AVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 4 ~~~tvg~~~-~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
..|+||++. .||+.|.|+.+|..+|+|.....|+ ..|+=.|+..-+.|||+.+.+ .+.|+.||+|.||.. .
T Consensus 25 ~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~---~~l~Dl~S~nGt~vng~~i~~--~~~L~~Gd~i~~G~~---~ 96 (106)
T 3gqs_A 25 KTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNS---VLIEDLGSKNGVIVEGRKIEH--QSTLSANQVVALGTT---L 96 (106)
T ss_dssp CEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSC---EEEEECSCSSCCEETTEECSS--EEECCTTCCEEETTE---E
T ss_pred CEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCc---EEEEECcCCCCeEECCEECCC--CeECCCCCEEEECCE---E
Confidence 468999998 7999999999999999998652332 567778777668999999988 679999999999753 4
Q ss_pred eeee
Q 001309 83 YIFQ 86 (1103)
Q Consensus 83 yif~ 86 (1103)
+.|.
T Consensus 97 ~~~~ 100 (106)
T 3gqs_A 97 FLLV 100 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 162
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.76 E-value=6.7e-05 Score=84.53 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhccC--CCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccC
Q 001309 540 LAINELFEVALNESK--SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 617 (1103)
Q Consensus 540 ~~~~~l~evl~~e~~--~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 617 (1103)
-.++.....+....+ ..|.||||||++. +. .+..+.|...++....+++++++.... .++....
T Consensus 171 ~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~-l~--~~~~~~L~~~le~~~~~~~ii~t~~~~-----------~~i~~t~ 236 (368)
T 3uk6_A 171 EQINAKVAEWREEGKAEIIPGVLFIDEVHM-LD--IESFSFLNRALESDMAPVLIMATNRGI-----------TRIRGTS 236 (368)
T ss_dssp HHHHHHHHHHHHHTC---CBCEEEEESGGG-SB--HHHHHHHHHHTTCTTCCEEEEEESCSE-----------EECBTSS
T ss_pred HHHHHHHHHhhhhccccccCceEEEhhccc-cC--hHHHHHHHHHhhCcCCCeeeeecccce-----------eeeeccC
Confidence 334444443333333 3489999999998 43 566677778888877788888776410 0000000
Q ss_pred cchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCchhhHHHHHHHHHhhchhhhhcccchhHHHHHhhh
Q 001309 618 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 697 (1103)
Q Consensus 618 ~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~ 697 (1103)
.+ .|+.++ ..|..+|.. |.+++|.++.+...+...+.. ..
T Consensus 237 ~~--------~~~~l~-------------~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~------------------~~ 276 (368)
T 3uk6_A 237 YQ--------SPHGIP-------------IDLLDRLLI-VSTTPYSEKDTKQILRIRCEE------------------ED 276 (368)
T ss_dssp CE--------EETTCC-------------HHHHTTEEE-EEECCCCHHHHHHHHHHHHHH------------------TT
T ss_pred CC--------CcccCC-------------HHHHhhccE-EEecCCCHHHHHHHHHHHHHH------------------cC
Confidence 00 111121 345556644 788888877776655443221 12
Q ss_pred CCCCccchhhhhhccCCCCHHHHHHHHhhhhhhccc
Q 001309 698 NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 733 (1103)
Q Consensus 698 ~~l~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~ 733 (1103)
..+++..++.|+..+.+.+..++..+|..|...|..
T Consensus 277 ~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 277 VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 235666777788887767888999999999888765
No 163
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=97.76 E-value=5.5e-05 Score=79.64 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=65.0
Q ss_pred Cceeeeeccc---------------ccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEe
Q 001309 3 GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVL 67 (1103)
Q Consensus 3 ~~~~tvg~~~---------------~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l 67 (1103)
.+.|+||++. .||+.|.|+++|..+|.|..-..+|.....|+=.||.-=..|||+.+.+...+.|
T Consensus 102 ~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI~~~~~~~L 181 (205)
T 3elv_A 102 RSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIEL 181 (205)
T ss_dssp CSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEECCBTSCEEC
T ss_pred CCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEECCCCceeEC
Confidence 4689999984 4999999999999999998665555444667777776558999999999999999
Q ss_pred ecCCeEEecCCC
Q 001309 68 RGGDELVFSPSG 79 (1103)
Q Consensus 68 ~~gde~~f~~~~ 79 (1103)
+.||+|.||.+.
T Consensus 182 ~~GD~I~fG~s~ 193 (205)
T 3elv_A 182 RSGDVLTLSEFE 193 (205)
T ss_dssp CTTCEEESSSSG
T ss_pred CCCCEEEECCCC
Confidence 999999999875
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.75 E-value=0.00012 Score=102.17 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=90.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 916 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 916 (1103)
.+..+.||+|||||.+++.+|+.+|.+++.++|.+-.. ...+..+|.-+.+. .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 36789999999999999999999999999999987432 23556677666654 478999999987 2222
Q ss_pred hHHHHHHHHhHHhh---------hc-CCcccCCccEEEEEecCC----CCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001309 917 HEAMRKMKNEFMVN---------WD-GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 980 (1103)
Q Consensus 917 ~~~l~~vl~~LL~~---------ld-gl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 980 (1103)
..+....+..+... +. |-.-+-+..+.|++|.|+ ...|++.++.|| +.+.+..||.+...+|+
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 22221111111111 11 211222356788889885 468999999999 67999999988877765
No 165
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.74 E-value=4.8e-05 Score=102.36 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc----ccc------------ccccHHHHHHHHHHHHh
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKW------------FGEGEKYVKAVFSLASK 893 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~----s~~------------~G~~e~~i~~lF~~A~~ 893 (1103)
..++.+++|+||||||||+||.+++.+. |..+..++..... ... ....++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4566889999999999999999998776 5667777765421 111 23456778888889999
Q ss_pred cCCeEEEEccccccccC
Q 001309 894 IAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 894 ~~PsILfIDEID~L~~~ 910 (1103)
.+|++||||+++.+++.
T Consensus 1504 ~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp TCCSEEEESCGGGCCCH
T ss_pred CCCCEEEEcChhHhccc
Confidence 99999999999988763
No 166
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=97.65 E-value=8.5e-05 Score=75.34 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=58.2
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecC
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSP 77 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~ 77 (1103)
...++||++..||+.|.|+.||...|+|... ++. ..|+=+|+.--+.|||+.+. .+.|+.||+|.||.
T Consensus 84 ~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~--~~~--~~l~DlgStNGT~VNG~~i~---~~~L~~GD~I~lG~ 151 (157)
T 3oun_A 84 EGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIRLGH 151 (157)
T ss_dssp SEEEEEESSTTCSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCCEETTEECS---EEECCTTCEEEETT
T ss_pred CCcEEEEeCCCCCEEeCCCCcChhHEEEEEE--CCE--EEEEECCCCCCeEECCEECc---eEECCCCCEEEECC
Confidence 4569999999999999999999999999863 222 67888887766899999996 58999999999975
No 167
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.65 E-value=2.3e-05 Score=70.71 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=42.7
Q ss_pred hcccchhHHHHHhhhCCC-CccchhhhhhccCCCCHHHHHHHHhhhhhhccccccCCCCCCCccccccCchhhhHHHHHh
Q 001309 683 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 761 (1103)
Q Consensus 683 ~gR~~Il~IhT~l~~~~l-~~~~L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~sI~v~~~df~~ 761 (1103)
++|.+|+++|+.. .++ ++++++.||..|.||+||||+.+|++|+..++.+.. ..+...+|..
T Consensus 1 ~~R~~Il~~~l~~--~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~---------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---------------YVILQSDLEE 63 (82)
T ss_dssp ---------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC---------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcC--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHHH
Confidence 3689999999752 233 678999999999999999999999999999998531 1356677877
Q ss_pred hhhhh
Q 001309 762 IQSES 766 (1103)
Q Consensus 762 a~~ei 766 (1103)
+...+
T Consensus 64 Al~~v 68 (82)
T 2dzn_B 64 AYATQ 68 (82)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 76554
No 168
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.64 E-value=7.6e-05 Score=81.90 Aligned_cols=27 Identities=44% Similarity=0.592 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGA 862 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~ 862 (1103)
.++++|+||||||||++|.+||+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 467999999999999999999998654
No 169
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=97.60 E-value=4.1e-05 Score=79.51 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=60.8
Q ss_pred eeeeecccccceeecCCCCcccceEEEEeec-CC-----------CceeEEEEecCcceEEEcCeeecCCceEEeecCCe
Q 001309 5 VFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GG-----------PSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 72 (1103)
Q Consensus 5 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~-~~-----------~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde 72 (1103)
.||||++..||+.|.|+.+|..+|.|..... .| ..+-+.. ....| +.|||+.+.++..+.|+.||+
T Consensus 52 ~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~D-lStNG-T~VNg~ri~~~~~~~L~~GD~ 129 (182)
T 1qu5_A 52 PFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCH-TGTNV-SYLNNNRMIQGTKFLLQDGDE 129 (182)
T ss_dssp SEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECC-CSSSC-CEETTEECCSSEEEECCTTBC
T ss_pred eEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEE-CCcCC-eEECCEEcCCCcceEcCCCCE
Confidence 4999999999999999999999999986531 11 2334444 34444 699999999999999999999
Q ss_pred EEecCC--CCcceeee
Q 001309 73 LVFSPS--GKHSYIFQ 86 (1103)
Q Consensus 73 ~~f~~~--~~~~yif~ 86 (1103)
|.|+.. |...+.|.
T Consensus 130 I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 130 IKIIWDKNNKFVIGFK 145 (182)
T ss_dssp CEEEEEGGGTEEEECC
T ss_pred EEEEEcCCCCEEEEEE
Confidence 999322 33445554
No 170
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.60 E-value=0.00061 Score=76.41 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=94.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEecCccccccccccHHHHHHHHHHHHh----cCCeEEEEccccc-
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDS- 906 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~-~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~----~~PsILfIDEID~- 906 (1103)
.+.+||+||+|.||++.++++++.+ +. ++..+... + +..++.++..+.. ....|++|||+|.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3579999999999999999998865 32 22222111 1 1123445444432 3457999999997
Q ss_pred cccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCC-----CCCCcHHHHhccccccccCCCCHHHHHHHHH
Q 001309 907 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 981 (1103)
Q Consensus 907 L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~ 981 (1103)
+ +... .+.|+..++.. ++..++|+++++. ...+.+++.+|. .++.+..++..+...+++
T Consensus 89 l-----~~~~-------~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 89 P-----NAAI-------NEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp C-----CTTH-------HHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred C-----ChHH-------HHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 6 2122 22333333332 1233444444432 235667888887 578899999999999999
Q ss_pred HHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001309 982 VILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1015 (1103)
Q Consensus 982 ~ll~~~~l~-~dvdl~~LA~~TeGySg~DL~~L~~ 1015 (1103)
..+...++. ++..+..|+..++|- .+++.+.++
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~gd-l~~~~~ele 186 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEGN-LLALAQALE 186 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTTC-HHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhchH-HHHHHHHHH
Confidence 988876643 445567777777663 334444333
No 171
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=97.55 E-value=0.00023 Score=73.96 Aligned_cols=78 Identities=27% Similarity=0.477 Sum_probs=60.5
Q ss_pred eeeeecc---cccceeecCCCCcccceEEEEeecCCC-ceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCC
Q 001309 5 VFTVGHN---RQCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGK 80 (1103)
Q Consensus 5 ~~tvg~~---~~~~~~l~d~~~~~~~c~l~~~~~~~~-~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~ 80 (1103)
.-+||+. ..||+.|..+.|+..+|.|.....++. .+..|+-. .+..+.|||+.+.. .+.|+.||.|+||.+
T Consensus 92 ~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a~t~VNG~~I~~--~~~L~~GDrI~lG~~-- 166 (184)
T 4egx_A 92 ITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGADTYVNGKKVTE--PSILRSGNRIIMGKS-- 166 (184)
T ss_dssp EEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTCCEEETTEECCS--CEECCTTCEEEETTT--
T ss_pred cCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCCeEEEcCEEccc--cEEcCCCCEEEECCC--
Confidence 5689974 469999999999999999987655543 33445544 34469999999975 688999999999854
Q ss_pred cceeeec
Q 001309 81 HSYIFQQ 87 (1103)
Q Consensus 81 ~~yif~~ 87 (1103)
|-|.|-.
T Consensus 167 h~Frfn~ 173 (184)
T 4egx_A 167 HVFRFNH 173 (184)
T ss_dssp EEEEEEC
T ss_pred CEEEECC
Confidence 7777753
No 172
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.55 E-value=5.2e-05 Score=91.22 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.6
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 343 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 343 ~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
..+-+||.||+|| ...+|||+||+.++.++.-++.
T Consensus 107 ~g~~vll~Gp~Gt--GKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPGV--GKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSSS--SHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHHhcCCCeEEEEe
Confidence 4667999999999 6999999999999988877764
No 173
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.49 E-value=0.0005 Score=70.69 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
.+.|.||+|+|||||++.|+..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999998865543
No 174
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=97.45 E-value=0.00034 Score=65.18 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=52.9
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCe
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 72 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde 72 (1103)
..+|++|+...|+|.|.||+|+..++.|.+..+| -++- .-..|.|.|||+.+ +.+.|.-||-
T Consensus 20 ~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~l-~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 20 DTIYRIGRQKGLEISIADESMELAHATACILRRG----VVRL-AALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp TCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEEE-EESSSCEEETTEEE---SEEEECGGGC
T ss_pred CcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEEE-EeccCcEEECCEEe---eeEEccCCcc
Confidence 4689999999999999999999999999988766 2221 25567899999999 5899999998
No 175
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=97.40 E-value=0.0002 Score=82.75 Aligned_cols=88 Identities=23% Similarity=0.352 Sum_probs=71.4
Q ss_pred CCceeeeecccccceeecCCCC---------cccceEEEEee-cCCCceeEEEEecCcceEEEcCeeecCCceEEeecCC
Q 001309 2 TGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRIE-NGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGD 71 (1103)
Q Consensus 2 ~~~~~tvg~~~~~~~~l~d~~~---------~~~~c~l~~~~-~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gd 71 (1103)
....|+||++..||+.|.|+.+ |..+|.|.+.. .++..+..|+-..+.| ..|||..+.++....|+.||
T Consensus 26 ~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nG-t~vn~~~~~~~~~~~l~~~d 104 (419)
T 3i6u_A 26 VNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG-TFVNTELVGKGKRRPLNNNS 104 (419)
T ss_dssp CSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSC-EEETTEECCTTCEEECCTTE
T ss_pred cCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCC-ceECcccccCCCcccCCCCC
Confidence 3567999999999999999987 99999997653 3344445565544343 67899999999999999999
Q ss_pred eEEecCCCCcceeeecccc
Q 001309 72 ELVFSPSGKHSYIFQQLSD 90 (1103)
Q Consensus 72 e~~f~~~~~~~yif~~~~~ 90 (1103)
++.||.+.+..|+|..+..
T Consensus 105 ~i~~~~~~~~~~~~~~~~~ 123 (419)
T 3i6u_A 105 EIALSLSRNKVFVFFDLTV 123 (419)
T ss_dssp EEEESSTTCEEEEEEESCS
T ss_pred EeeeeccccceEEEecccc
Confidence 9999999998898886643
No 176
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.36 E-value=0.0004 Score=79.91 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=63.9
Q ss_pred CCceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCc
Q 001309 2 TGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKH 81 (1103)
Q Consensus 2 ~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~ 81 (1103)
....+|||++..||+.|.|+.||..+|+|... +|. ..|+=.||..-+.|||+.+. ..+.|+.||+|.||. +
T Consensus 304 ~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~--~~~~L~~gd~i~~G~---~ 374 (388)
T 2ff4_A 304 QAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGVHVQHERIR--SAVTLNDGDHIRICD---H 374 (388)
T ss_dssp CSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCCEETTEECS--SEEEECTTCEEEETT---E
T ss_pred CCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCeEECCEECC--CceECCCCCEEEECC---E
Confidence 35679999999999999999999999999863 333 56777887666899999995 479999999999975 5
Q ss_pred ceeeec
Q 001309 82 SYIFQQ 87 (1103)
Q Consensus 82 ~yif~~ 87 (1103)
.+.|+.
T Consensus 375 ~~~~~~ 380 (388)
T 2ff4_A 375 EFTFQI 380 (388)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 677764
No 177
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.25 E-value=0.00058 Score=74.48 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.9
Q ss_pred chhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCC
Q 001309 313 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 383 (1103)
Q Consensus 313 se~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~~ 383 (1103)
.++.+..|..+...|+++..+..-.+ -....+.|||.||+|| .+.+|||++|+.++.+++.+|.+.+.
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~Gt--GKT~la~~la~~l~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFT 87 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTS--SHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred hHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEcchhcc
Confidence 36777778777776665544431111 0123468999999999 69999999999999998888875543
No 178
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.17 E-value=0.0031 Score=75.67 Aligned_cols=172 Identities=12% Similarity=0.077 Sum_probs=94.9
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-------hCCcEEEEecCcc-
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-------AGANFINISMSSI- 872 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e-------lg~~fi~v~~s~L- 872 (1103)
..++|.+...+.|.+.+... ....+-++|+||+|+|||+||..+++. +...++.++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 46899999999999877520 112356999999999999999998642 2112333332221
Q ss_pred ----ccc------cc-----------cccHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh
Q 001309 873 ----TSK------WF-----------GEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 873 ----~s~------~~-----------G~~e~~i~~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ 930 (1103)
... .. ...+.....+...... .+|.+|+||+++.. . .+..
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~----~l~~---- 253 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W----VLKA---- 253 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H----HHHT----
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H----HHHH----
Confidence 000 00 0111222222222222 26899999999642 0 1111
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccc---CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 001309 931 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV---NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1007 (1103)
Q Consensus 931 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l---~lPd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg 1007 (1103)
+ ..+..||.||........ . . ...+.+ ...+.++-.++|.................|+..++|..
T Consensus 254 ---l----~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P- 321 (591)
T 1z6t_A 254 ---F----DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP- 321 (591)
T ss_dssp ---T----CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH-
T ss_pred ---h----cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc-
Confidence 1 133567777765432110 0 0 122333 36788888889888765422122345788999998864
Q ss_pred HHHHHHH
Q 001309 1008 SDLKNLC 1014 (1103)
Q Consensus 1008 ~DL~~L~ 1014 (1103)
-.|..+.
T Consensus 322 Lal~~~a 328 (591)
T 1z6t_A 322 LVVSLIG 328 (591)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.12 E-value=0.0032 Score=65.29 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------c---------------------
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------W--------------------- 876 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~--------------~--------------------- 876 (1103)
+..-++|.||+|+|||+|++.++... +..++.++....... .
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSL 101 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeee
Confidence 44568999999999999999998654 556655554221000 0
Q ss_pred -ccccHHHHHHHHHHHHhcCCe--EEEEccccccc
Q 001309 877 -FGEGEKYVKAVFSLASKIAPS--VVFVDEVDSML 908 (1103)
Q Consensus 877 -~G~~e~~i~~lF~~A~~~~Ps--ILfIDEID~L~ 908 (1103)
..........+...+....|. +|+|||+..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 001223334455555667888 99999999875
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.11 E-value=0.00024 Score=81.76 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccccHHHHHHHHHHHHhcCCeEEEEcccccccc-CCC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG-RRE 912 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L~s~~~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~-~r~ 912 (1103)
.++..++|+||||+|||+|+++++...+..++.+..+.- . . -|....-.+..++++||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~-------~---~--~~~lg~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-------R---L--NFELGVAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT-------T---H--HHHHGGGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch-------h---H--HHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 345679999999999999999999988776655332220 0 0 11112223446789999998764 221
Q ss_pred CCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccc
Q 001309 913 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMV 968 (1103)
Q Consensus 913 ~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l 968 (1103)
-....... ....+...++| .+.|+++||+++.+ +++++ |++..+..
T Consensus 235 l~~~~~~~--~~~~l~~~ldG-------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 235 LPSGQGIN--NLDNLRDYLDG-------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCCSHHH--HHHTTHHHHHC-------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred ccccCcch--HHHHHHHHhcC-------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 11111110 11223333444 24567778888877 45544 45443333
No 181
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.10 E-value=9.4e-05 Score=87.29 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=25.7
Q ss_pred HHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001309 544 ELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 598 (1103)
Q Consensus 544 ~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~~ 598 (1103)
.+++.+.. .+|.||||| +..+..+.|+..|+ .|.+.|||+||.
T Consensus 258 ~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~ 300 (468)
T 3pxg_A 258 KVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTL 300 (468)
T ss_dssp HHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCT
T ss_pred HHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCH
Confidence 44444443 689999999 44555555555555 679999999994
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.07 E-value=0.0025 Score=70.97 Aligned_cols=62 Identities=27% Similarity=0.303 Sum_probs=42.1
Q ss_pred cccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 304 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 304 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
+|++|-. .+..+..|..+.....+.. ...+.|||+||+|| ..++||+++|+.++.++..++.
T Consensus 27 ~~~~iiG--~~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~Gt--GKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIG--QESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAGL--GKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCS--CHHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTTS--SHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCC--hHHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCCC--CHHHHHHHHHHHhCCCeEEecc
Confidence 5776533 3666666665554322111 12346999999999 6999999999998877666553
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.99 E-value=0.0024 Score=76.10 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=50.7
Q ss_pred cccccccccchhHHHHHHHhhhhh-ccc-cccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 001309 304 SFESFPYYLSDITKNVLIASTYVH-LKC-NNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 381 (1103)
Q Consensus 304 sfd~fpyylse~tk~~L~~~~~~h-L~~-~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~ 381 (1103)
+|+++-. .+..+..|....-.. ..+ ..+.+.+.+-.+..+.+||+||+|| ...+||+|||+.++.+++.++.++
T Consensus 37 ~~~dliG--~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGt--GKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCG--NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI--GKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCS--CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTS--SHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcC--CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCC--CHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4555433 355555555543321 111 2333444444456689999999999 699999999999999999888765
Q ss_pred CCC
Q 001309 382 LPG 384 (1103)
Q Consensus 382 ~~g 384 (1103)
+.+
T Consensus 113 ~~~ 115 (516)
T 1sxj_A 113 VRS 115 (516)
T ss_dssp CCC
T ss_pred cch
Confidence 543
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.98 E-value=0.0028 Score=65.50 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
.+..-++|+||||+|||+|+..++...+.+++.++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34456999999999999999999886677788887654
No 185
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.97 E-value=0.0025 Score=72.80 Aligned_cols=76 Identities=24% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------cccccHHHHHHHHHHHHhc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKI 894 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----------------~~G~~e~~i~~lF~~A~~~ 894 (1103)
.+..-++|+||||+|||+|+..++..+ +..++.++....... .....+..+..+....+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 344569999999999999999998765 667777876542110 0112233343333444456
Q ss_pred CCeEEEEcccccccc
Q 001309 895 APSVVFVDEVDSMLG 909 (1103)
Q Consensus 895 ~PsILfIDEID~L~~ 909 (1103)
.+.+++||.+..+++
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 789999999998875
No 186
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.95 E-value=0.011 Score=63.21 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
..|++.|+||+|||+++-.+|..+ |..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998776 677665555
No 187
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.94 E-value=0.0026 Score=72.88 Aligned_cols=76 Identities=26% Similarity=0.282 Sum_probs=51.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----------------ccccHHHHHHHHHHHHhc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----------------FGEGEKYVKAVFSLASKI 894 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~----------------~G~~e~~i~~lF~~A~~~ 894 (1103)
.+..-++|+||||+|||+||..++... +.+++.++...-.... ....+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344669999999999999999987664 6778888765421111 012233333333344456
Q ss_pred CCeEEEEcccccccc
Q 001309 895 APSVVFVDEVDSMLG 909 (1103)
Q Consensus 895 ~PsILfIDEID~L~~ 909 (1103)
.+.+|+||.+..|..
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999999974
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.91 E-value=0.0034 Score=71.35 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=50.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----ccc------------ccHHHHHHHHHHHHhc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKI 894 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----~~G------------~~e~~i~~lF~~A~~~ 894 (1103)
.+..-++|+||||+|||+||..++... +..++.++...-... ..| ..+..+..+...+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 344669999999999999999998654 567777776442111 011 1233333333444566
Q ss_pred CCeEEEEcccccccc
Q 001309 895 APSVVFVDEVDSMLG 909 (1103)
Q Consensus 895 ~PsILfIDEID~L~~ 909 (1103)
.|.+|+||++..++.
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999873
No 189
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.0023 Score=67.33 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=49.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc--------cccc----------------cc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EG 880 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~L~s--------~~~G----------------~~ 880 (1103)
.+..-++|+||||+|||+|+..++... +...+.++...... ..++ ..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 344569999999999999999999852 35677777654100 0000 01
Q ss_pred H---HHHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 881 E---KYVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 881 e---~~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
+ ..+..+...+....|.+|+||++..++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1 12233444455568999999999988643
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.0039 Score=69.23 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEec
Q 001309 343 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDS 379 (1103)
Q Consensus 343 ~s~rILLsgp~GsE~Yqe~LakALA~~f---~a~LL~lDs 379 (1103)
..+-+||+||+|| ...+||+|+|+++ +.+++.++.
T Consensus 36 ~~~~lll~G~~Gt--GKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGT--GKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSS--SHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCC--cHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3467999999999 6999999999998 677766653
No 191
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.80 E-value=0.015 Score=75.07 Aligned_cols=173 Identities=10% Similarity=0.068 Sum_probs=97.8
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--C--cEEEEecCccc
Q 001309 801 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--A--NFINISMSSIT 873 (1103)
Q Consensus 801 ddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g--~--~fi~v~~s~L~ 873 (1103)
..++|.+...++|.+.+... ....+-+.|+|+.|+|||+||+.+++.. . + .++.++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 36899999999999987521 1123568999999999999999987652 1 2 23344433210
Q ss_pred c------------c---------cccccHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhh
Q 001309 874 S------------K---------WFGEGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 930 (1103)
Q Consensus 874 s------------~---------~~G~~e~~i~~lF~~A~~--~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ 930 (1103)
. . ........+...+..... .++.+|+||+++.. . .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~----~------- 250 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W----V------- 250 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H----H-------
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H----H-------
Confidence 0 0 000111222222222222 23789999999743 0 1
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC-CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 001309 931 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 931 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l-Pd~eeR~eIL~~ll~~~~l~~dvdl~~LA~~TeGySg~D 1009 (1103)
+..+. ....||.||..+...... ......+.+.. .+.++-.++|..+.....-.......+|++.+.|. +-.
T Consensus 251 ~~~~~----~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 251 LKAFD----NQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp HTTTC----SSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHH
T ss_pred HHhhc----CCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHH
Confidence 11111 234678888655332110 11224466665 78888888888776443222234477899999876 334
Q ss_pred HHHH
Q 001309 1010 LKNL 1013 (1103)
Q Consensus 1010 L~~L 1013 (1103)
|..+
T Consensus 324 l~~~ 327 (1249)
T 3sfz_A 324 VSLI 327 (1249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 192
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.78 E-value=0.027 Score=62.47 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 345 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 345 ~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
+.+||.||+|| .+.+||||||+.++.++..+..
T Consensus 47 ~~vll~G~pGt--GKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPGL--AKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCCH--HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCCC--cHHHHHHHHHHHhCCCeEEEec
Confidence 57999999999 7999999999999988776663
No 193
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.70 E-value=0.0028 Score=69.81 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=27.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 344 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 344 s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
.+.|||+||+|| .+++||+++|+.++.++..++
T Consensus 38 ~~~vll~G~~Gt--GKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 38 LEHLLLFGPPGL--GKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CCCCEEECCTTC--CCHHHHHHHHHHHTCCEEEEC
T ss_pred CCcEEEECCCCC--CHHHHHHHHHHHhCCCEEEEe
Confidence 467999999999 699999999999877665544
No 194
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.70 E-value=0.00084 Score=68.01 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
++.|+|+|+||+|||++++.+|..++++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999887654
No 195
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.69 E-value=0.0023 Score=66.02 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v 867 (1103)
.-++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999987766554 5555444
No 196
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.65 E-value=0.0099 Score=58.98 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHhcCCCCEEEEeecc
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHT 597 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~-----~~~~~~~l~~~L~~l~g~vvvIgs~~ 597 (1103)
++.+++-+.. ..+|.||+|||++.+... ..++.+.+...++ .+++.+|++++
T Consensus 103 ~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~ 159 (195)
T 1jbk_A 103 LKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATT 159 (195)
T ss_dssp HHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEEC
T ss_pred HHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCC
Confidence 4444443322 267999999999996532 4566777777776 46788888887
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.64 E-value=0.031 Score=61.72 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=42.5
Q ss_pred cccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001309 304 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 379 (1103)
Q Consensus 304 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 379 (1103)
+|++|... ++.+..|..+.- . ....+-+|+.||+|| ...+||+|+|+.++.+++-++.
T Consensus 24 ~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G~--GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 24 TIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPGT--GKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp STTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTTS--SHHHHHHHHHHHTTEEEEEEET
T ss_pred CHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCCC--CHHHHHHHHHHHhCCCEEEEcc
Confidence 57776654 777776665543 1 112245799999999 6999999999999988887774
No 198
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.63 E-value=0.0015 Score=65.54 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
.-|+|+|+||+|||+++++++..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 46999999999999999999999999988776543
No 199
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.017 Score=58.72 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001309 555 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 597 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~ 597 (1103)
..+.||+|||++.+ . .+..+.|...++....++++|++++
T Consensus 101 ~~~~vliiDe~~~l-~--~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADAL-T--ADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGS-C--HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhc-C--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 67889999999994 2 2345567777887788888888887
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.61 E-value=0.0079 Score=68.60 Aligned_cols=76 Identities=26% Similarity=0.332 Sum_probs=50.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----ccc------------ccHHHHHHHHHHHHhc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKI 894 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----~~G------------~~e~~i~~lF~~A~~~ 894 (1103)
.+..-++|+|+||+|||+||..++..+ +.+++.++...-... .+| ..+.....+-..++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 344679999999999999999998764 677888887432111 001 1122222222233456
Q ss_pred CCeEEEEcccccccc
Q 001309 895 APSVVFVDEVDSMLG 909 (1103)
Q Consensus 895 ~PsILfIDEID~L~~ 909 (1103)
.+.+|+||.+..+..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 789999999999864
No 201
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.011 Score=63.19 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc-------ccccccccc-----HHHHHHHHHHHHh----cC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IA 895 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~-------L~s~~~G~~-----e~~i~~lF~~A~~----~~ 895 (1103)
+..-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. -.....++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 33458999999999999888887666 55666654221 1111 1100 0112345555554 34
Q ss_pred CeEEEEcccccc
Q 001309 896 PSVVFVDEVDSM 907 (1103)
Q Consensus 896 PsILfIDEID~L 907 (1103)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999876
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.52 E-value=0.0063 Score=68.80 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc-c-------ccc----------------cc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K-------WFG----------------EG 880 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~L~s-~-------~~G----------------~~ 880 (1103)
.+..-++|+||||+|||+||..+|... +..++.++...... . .++ ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 344568999999999999999998873 45677777654211 0 000 11
Q ss_pred H---HHHHHHHHHHHh--cCCeEEEEccccccccC
Q 001309 881 E---KYVKAVFSLASK--IAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 881 e---~~i~~lF~~A~~--~~PsILfIDEID~L~~~ 910 (1103)
+ ..+..+...+.. ..+.+|+||.+..++..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 1 122333444555 67899999999998743
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.52 E-value=0.0038 Score=84.38 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----cc--------ccHHHHHHHHHHHHh----
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 893 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~----~G--------~~e~~i~~lF~~A~~---- 893 (1103)
..+..-++|+|+||+|||+||..+|..+ +.+++.++.......+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 4566779999999999999999998876 4578888876643332 22 112234455555544
Q ss_pred cCCeEEEEcccccccc
Q 001309 894 IAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 894 ~~PsILfIDEID~L~~ 909 (1103)
..|++||||.++.+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6799999999999975
No 204
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.038 Score=61.68 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=73.9
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--ChhhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCCCceeeccC
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 617 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~--~~~~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 617 (1103)
++.+++.+.. ...|.||+|||++.+... .++.+..+...++.+ ..++++|+++|..+-
T Consensus 118 ~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~---------------- 179 (387)
T 2v1u_A 118 YERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF---------------- 179 (387)
T ss_dssp HHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT----------------
T ss_pred HHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch----------------
Confidence 4455555532 356999999999996554 455555555555555 568999999984211
Q ss_pred cchhhhhcccCCCCccccccccccchHHHHHhhhhCCC-eEEEeCCchhhHHHHHHHHHhhchhhhhcccchhHHHHHhh
Q 001309 618 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPN-KVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLS 696 (1103)
Q Consensus 618 ~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~-~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~ 696 (1103)
++.+. ..+..+|+. .|.+++|+.+.+..-+...+...+.
T Consensus 180 -----------~~~l~-------------~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------------- 219 (387)
T 2v1u_A 180 -----------VENLE-------------PRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------------- 219 (387)
T ss_dssp -----------SSSSC-------------HHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC----------------
T ss_pred -----------HhhhC-------------HHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc----------------
Confidence 01111 344556665 7888888887776655544432111
Q ss_pred hCCCCccchhhhhhccC---CCCHHHHHHHHhhhhhhcc
Q 001309 697 RNGLDCVDLESLCIKDQ---TLTTEGVEKIVGWALSHHF 732 (1103)
Q Consensus 697 ~~~l~~~~L~~La~~tk---g~sgadI~~Lv~~A~s~al 732 (1103)
...++...++.++..+. |. .-.+..+|..|...+.
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~-~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGD-ARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHH
Confidence 11234444555555554 32 2345566666665544
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.48 E-value=0.0043 Score=69.48 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccc-cc-------ccc----------------cc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT-SK-------WFG----------------EG 880 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~L~-s~-------~~G----------------~~ 880 (1103)
.+..-++|+||||+|||+||..+|... +..++.++...-. .. .++ ..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 344569999999999999999998875 4567778765421 00 000 11
Q ss_pred H---HHHHHHHHHHHh-cCCeEEEEcccccccc
Q 001309 881 E---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 881 e---~~i~~lF~~A~~-~~PsILfIDEID~L~~ 909 (1103)
+ ..+..+...++. ..+.+|+||.+..++.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 1 123344445555 6789999999998864
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.0015 Score=67.46 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+...|+|.||||+|||++++++|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 4467999999999999999999999999887554
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.012 Score=61.78 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
.+..-++|+||||+|||+|+..++... +..++.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344568999999999999998887543 556666654
No 208
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.36 E-value=0.029 Score=67.55 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=51.3
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC--CCcHHHHhccccccccCCCCHH
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
-+|+|||++.|+.... ......+..+...- ....|-+|.+|.+|. .++..++.-|..+|.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998864221 11222333333221 235688888888886 8999999989888999999988
Q ss_pred HHHHHHH
Q 001309 975 NREKIIR 981 (1103)
Q Consensus 975 eR~eIL~ 981 (1103)
+...++.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8877763
No 209
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0022 Score=63.71 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
-|+|.|+||+||||+++.++..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998886554
No 210
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.26 E-value=0.0023 Score=64.71 Aligned_cols=32 Identities=47% Similarity=0.818 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
...|+|+|+||+|||+++++++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 35799999999999999999999999887654
No 211
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.24 E-value=0.0071 Score=70.93 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998877
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.23 E-value=0.011 Score=66.51 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=46.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc----ccc------------cccHHHHHHHHHH---HHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWF------------GEGEKYVKAVFSL---ASK 893 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el-----g~~fi~v~~s~L~s----~~~------------G~~e~~i~~lF~~---A~~ 893 (1103)
-++|+||||+|||+|+-.++... +..++.++...-.. ..+ ...+...-.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988775443 56788888754211 001 1122220122222 345
Q ss_pred cCCeEEEEcccccccc
Q 001309 894 IAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 894 ~~PsILfIDEID~L~~ 909 (1103)
..|.+|+||-|..|++
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999975
No 213
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.22 E-value=0.0022 Score=64.91 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|+|.|+||+|||++|+.++..++++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999999887544
No 214
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.20 E-value=0.0032 Score=63.43 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.|+||+|||+++++||..++++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 599999999999999999999999887653
No 215
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.18 E-value=0.0039 Score=63.17 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+.-|+|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45799999999999999999999999887653
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.15 E-value=0.016 Score=63.27 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=30.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEeccCC
Q 001309 345 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 382 (1103)
Q Consensus 345 ~rILLsgp~GsE~Yqe~LakALA~~f---~a~LL~lDs~~~ 382 (1103)
..+||.||+|| .+.+|||+||+.+ +.++..+|.+.+
T Consensus 48 ~~~ll~G~~Gt--GKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGV--GKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSS--SHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCc--CHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 46999999999 6999999999998 566888876544
No 217
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.14 E-value=0.0027 Score=63.45 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..|+|.|++|||||++++.+|..++++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999987643
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.12 E-value=0.029 Score=59.01 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA--~e--lg~~fi~v~~ 869 (1103)
.+..-+.|.||+|+|||+|++.++ .. .+...+.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 344569999999999999999998 32 2444444443
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.12 E-value=0.049 Score=60.74 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-------c-------------ccccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------W-------------FGEGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~-------~-------------~G~~e~~i~~lF~~A 891 (1103)
++.-++|.||+|+|||+++..+|..+ +..+..+++...... | .+.........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 45669999999999999999998776 555555554321100 0 011222223345555
Q ss_pred HhcCCeEEEEccccc
Q 001309 892 SKIAPSVVFVDEVDS 906 (1103)
Q Consensus 892 ~~~~PsILfIDEID~ 906 (1103)
....+.+|+||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 667789999998853
No 220
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.09 E-value=0.0027 Score=64.88 Aligned_cols=33 Identities=39% Similarity=0.671 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATE-AGANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~e-lg~~fi~v~ 868 (1103)
+..|+|+|+||+|||++++.++.. +|++++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 356999999999999999999999 687776543
No 221
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.04 E-value=0.0082 Score=64.61 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 872 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L 872 (1103)
.+..++|.|+||+|||++|+.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999877777776554
No 222
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.02 E-value=0.0048 Score=64.55 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
++..|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345799999999999999999999999877654
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.02 E-value=0.0046 Score=61.71 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999976653
No 224
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.00 E-value=0.013 Score=67.77 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=48.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc--------ccccc----------------c
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFGE----------------G 880 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~L~s--------~~~G~----------------~ 880 (1103)
.+..-++|+||||+|||+|+..++... +...+.++...... ..++- .
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 344669999999999999999876443 23477777644210 00110 0
Q ss_pred ---HHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001309 881 ---EKYVKAVFSLASKIAPSVVFVDEVDSMLGR 910 (1103)
Q Consensus 881 ---e~~i~~lF~~A~~~~PsILfIDEID~L~~~ 910 (1103)
...+..+...+....|.+|+||++-.++..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112333444455568999999999988754
No 225
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.99 E-value=0.005 Score=62.20 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.-|+|.|+||+|||++|+.++..++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5699999999999999999999999876543
No 226
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.98 E-value=0.0038 Score=67.43 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISM 869 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~ 869 (1103)
-++|.||||+|||+||++||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999999887764
No 227
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.98 E-value=0.031 Score=66.99 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=91.2
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCcE---EEEecCccc---
Q 001309 804 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGANF---INISMSSIT--- 873 (1103)
Q Consensus 804 ~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~----elg~~f---i~v~~s~L~--- 873 (1103)
+|.+..++.|.+.+.. .. ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~---------~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---------MC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHH---------HT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhc---------cc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 4999999999887742 10 11235689999999999999999997 232221 223332210
Q ss_pred ---------ccccc-----------c-cHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhh
Q 001309 874 ---------SKWFG-----------E-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 931 (1103)
Q Consensus 874 ---------s~~~G-----------~-~e~~i~~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~l 931 (1103)
..... . ....+...+...-.. ++.+|+||+++.. . .+ .+...
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------~---~~--~~~~~- 263 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------E---TI--RWAQE- 263 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------H---HH--HHHHH-
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------h---hh--ccccc-
Confidence 00000 0 011222333333333 3789999999753 0 11 11110
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCc--ccHHHHHHHcCCCcHHH
Q 001309 932 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSD 1009 (1103)
Q Consensus 932 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~~~~l~~d--vdl~~LA~~TeGySg~D 1009 (1103)
....||.||........ .......+.++..+.++-.++|..........++ .....|++.+.|. +-.
T Consensus 264 --------~gs~ilvTTR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLA 332 (549)
T 2a5y_B 264 --------LRLRCLVTTRDVEISNA--ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PAT 332 (549)
T ss_dssp --------TTCEEEEEESBGGGGGG--CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHH
T ss_pred --------CCCEEEEEcCCHHHHHH--cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHH
Confidence 23467777765322110 0001245778888888888888876322211011 1245677777765 434
Q ss_pred HHHH
Q 001309 1010 LKNL 1013 (1103)
Q Consensus 1010 L~~L 1013 (1103)
|+.+
T Consensus 333 l~~~ 336 (549)
T 2a5y_B 333 LMMF 336 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 228
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=95.96 E-value=0.018 Score=54.17 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=61.2
Q ss_pred CceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcc
Q 001309 3 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHS 82 (1103)
Q Consensus 3 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~ 82 (1103)
+..++||++..| ++.|.-.|-..|+|+--..+| . ..+--+|..+. .|||+.+.|+..+.|+.||.+-. .+|+|.
T Consensus 22 g~~v~iGR~p~t--~I~DkrcSR~h~~L~~~~~~g-~-v~vk~lg~Np~-~vng~~l~k~~~~~L~~GD~l~L-l~~~~~ 95 (102)
T 3kt9_A 22 LEAVVIGRGPET--KITDKKCSRQQVQLKAECNKG-Y-VKVKQVGVNPT-SIDSVVIGKDQEVKLQPGQVLHM-VNELYP 95 (102)
T ss_dssp TCEEEECSSTTT--CCCCTTSCSSCEEEEEETTTT-E-EEEEECSSSCC-EETTEECCBTCEEEECTTCCEEE-ETTEEE
T ss_pred CCcEEeccCCcc--ccccCcccCcceEEEEecCCC-E-EEEEECcCCCC-eECCEEcCCCCeEEeCCCCEEEE-ccCCce
Confidence 456889999987 568999999999999655444 3 34557787755 67999999999999999997644 678877
Q ss_pred eeee
Q 001309 83 YIFQ 86 (1103)
Q Consensus 83 yif~ 86 (1103)
|-++
T Consensus 96 ~~v~ 99 (102)
T 3kt9_A 96 YIVE 99 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7554
No 229
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.94 E-value=0.0055 Score=62.23 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+..|+|.|+||+|||++++.++..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 357999999999999999999999998876543
No 230
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.94 E-value=0.0047 Score=60.83 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
-|+|.||||+|||++|+.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8889887664
No 231
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.93 E-value=0.0059 Score=62.85 Aligned_cols=32 Identities=38% Similarity=0.601 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..|+|.|+||+|||++|+.++..++++++.++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 46999999999999999999999998876553
No 232
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.93 E-value=0.013 Score=60.74 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+..-+.|.||+|+|||+|++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344569999999999999999999754
No 233
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.88 E-value=0.0054 Score=61.08 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.|+||+|||++|+.++..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 599999999999999999999999887653
No 234
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=95.88 E-value=0.01 Score=57.58 Aligned_cols=68 Identities=25% Similarity=0.230 Sum_probs=54.7
Q ss_pred Cceeeeeccc-ccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCC
Q 001309 3 GAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS 78 (1103)
Q Consensus 3 ~~~~tvg~~~-~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~ 78 (1103)
...++||+.. +|||.|.|+.++..+|.|...++| ..| .|+.+.+.|||..+.... .|..|+-+--|..
T Consensus 23 ~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L--~~s~ngt~vdG~~v~~~~--~L~~g~~l~lG~~ 91 (123)
T 4a0e_A 23 HGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRL--TDSAEPLLQEGLPVPLGT--LLRAGSCLEVGFL 91 (123)
T ss_dssp SEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEE--EEESSCCEETTEECCTTC--BCCTTSCEEETTE
T ss_pred CCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEE--EeccCCEEECCEEccccc--ccCCCCEEEEccE
Confidence 4568999998 999999999999999999987666 445 399999999999977654 7777776654443
No 235
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.044 Score=57.47 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=48.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecCccccc-------------------------c--------
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSITSK-------------------------W-------- 876 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~e----lg~~fi~v~~s~L~s~-------------------------~-------- 876 (1103)
.+..-++|+|+||+|||+||..+|.. .+.+++.++...-... +
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 107 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcc
Confidence 34456999999999999999887643 2666766664320000 0
Q ss_pred ---------ccccHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 001309 877 ---------FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 877 ---------~G~~e~~i~~lF~~A~~~~PsILfIDEID~L~~ 909 (1103)
....+..+..+...+....+.+++||.+..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred cchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 001122344455666777889999999988753
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.82 E-value=0.0054 Score=61.98 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999998776543
No 237
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.81 E-value=0.013 Score=63.24 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 872 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e---lg~~fi~v~~s~L 872 (1103)
.-|+|.|+||+|||++|+.++.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46999999999999999999998 6888886665443
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.80 E-value=0.0071 Score=62.29 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+.-|+|.|++|+||||+|+.|+..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 35699999999999999999999998776653
No 239
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.80 E-value=0.055 Score=60.29 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
.+..-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 444569999999999999999998665 456777765
No 240
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.77 E-value=0.0046 Score=62.95 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.-|+|.|+||+|||++|+.++..++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999776554
No 241
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.74 E-value=0.073 Score=63.47 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=48.7
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCC--CCcHHHHhccccccccCCCCHH
Q 001309 897 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 974 (1103)
Q Consensus 897 sILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~l~lPd~e 974 (1103)
-+|+|||...++... ......++..+...- ....+-+|.+|.++. .++..++..|..++.+...+..
T Consensus 299 ivlvIDE~~~ll~~~-----~~~~~~~l~~Lar~g------Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-----GKKVEELIARLAQKA------RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp EEEEEETHHHHHHHH-----HHHHHHHHHHHHHHC------GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred EEEEEeCHHHHHhhh-----hHHHHHHHHHHHHHh------hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 389999998875311 111222333322221 113577778887775 6888888889888999999988
Q ss_pred HHHHHHHH
Q 001309 975 NREKIIRV 982 (1103)
Q Consensus 975 eR~eIL~~ 982 (1103)
+...++..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 88877653
No 242
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.73 E-value=0.0049 Score=61.20 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|+|.|++|+|||++++.++..++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998877543
No 243
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=95.73 E-value=0.012 Score=63.51 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=49.3
Q ss_pred eeeeecccccceeecCCCCcccceEEEEeecC--CCceeEEEEec-CcceEEEcCeeecCCceEEee-cCCeEEec
Q 001309 5 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVFS 76 (1103)
Q Consensus 5 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~--~~~~a~le~~g-~~~~v~vng~~~~~~~~~~l~-~gde~~f~ 76 (1103)
.+|||+...||+.|.|+ ++ ++.++.. ++ |. -.||..| +.|.|.|||+.+... +.|+ .||++.|+
T Consensus 93 ~itIG~~~~~dI~l~~~--~~-~~~~~~~-~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~ig 160 (238)
T 1wv3_A 93 TMTIGPNAYDDMVIQSL--MN-AIIIKDF-QSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYVE 160 (238)
T ss_dssp EEEEESSTTSSEECTTC--SS-CEEEECG-GGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEET
T ss_pred eEEEeCCCCCeEEeCCC--ee-EEEEecc-cCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEEC
Confidence 79999999999999999 33 3333332 11 22 4689999 678899999999764 4799 99999884
No 244
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.70 E-value=0.013 Score=66.75 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=45.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC-ccc---------cccccccHHHHHHHHHHHHhcCCeEEEEc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 902 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s-~L~---------s~~~G~~e~~i~~lF~~A~~~~PsILfID 902 (1103)
..++|.||+|+||||+.++++..+ +..++.+.-+ ++. ....+.........+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 359999999999999999998766 3444443321 110 00111111234456777778899999999
Q ss_pred ccc
Q 001309 903 EVD 905 (1103)
Q Consensus 903 EID 905 (1103)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 993
No 245
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.69 E-value=0.0052 Score=61.82 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
.-|+|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46999999999999999999999999877
No 246
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.69 E-value=0.014 Score=64.31 Aligned_cols=38 Identities=37% Similarity=0.492 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 872 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~L 872 (1103)
.+.-++|.||||+||||++++++.+++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34679999999999999999999998555666765443
No 247
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.67 E-value=0.0052 Score=61.37 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=23.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVAT-EAGANFI 865 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~-elg~~fi 865 (1103)
.-|+|.|+||+|||++|+.++. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554443
No 248
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.67 E-value=0.0074 Score=62.73 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.||||+||||+|+.++.+++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999999887765
No 249
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0078 Score=60.68 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.-|+|.|+||+|||++++.++..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5699999999999999999999999777654
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.66 E-value=0.0067 Score=61.18 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 251
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.65 E-value=0.023 Score=64.39 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 871 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---------g~~fi~v~~s~ 871 (1103)
.+..-+.|+||+|+|||+|++.++... +-.++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 344569999999999999999999876 23557777643
No 252
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.65 E-value=0.0086 Score=63.43 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+..|+|.|+||+|||++|+.||++++++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999877654
No 253
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.65 E-value=0.0087 Score=64.11 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
++..|+|.||||+||||+|+.+++.++++++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456899999999999999999999998877654
No 254
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.64 E-value=0.0076 Score=62.55 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.||||+||||+|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999999887655
No 255
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.64 E-value=0.0061 Score=62.67 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+.-|+|.|++|+|||++++.+++.++++++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356999999999999999999999998766544
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.62 E-value=0.013 Score=65.17 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEecCccc-cc-------ccc--------
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG-------- 878 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---------------g----~~fi~v~~s~L~-s~-------~~G-------- 878 (1103)
.+..-++|+||||+|||+||..+|... | ..++.++...-. .. .++
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 344568999999999999999998763 2 467777765421 00 000
Q ss_pred --------ccH---HHHHHHHHHHHh-cCCeEEEEcccccccc
Q 001309 879 --------EGE---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 909 (1103)
Q Consensus 879 --------~~e---~~i~~lF~~A~~-~~PsILfIDEID~L~~ 909 (1103)
..+ ..+..+...... ..+.+|+||.+..++.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 111 122334444455 5688999999998864
No 257
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.61 E-value=0.047 Score=64.00 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=105.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------------cccccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------------WFGEGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~--------------------~~G~~e~~i~~lF~~A 891 (1103)
++.-+++.|++|+||||++..+|..+ |..+..+++...... ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999876 667766665432110 1112334556677777
Q ss_pred HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc----c-cc
Q 001309 892 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----R-RL 966 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~-~I 966 (1103)
......+|+||..-++. ........ +..+..... +..-++|+-++...+.+ ....+|. . .+
T Consensus 179 ~~~~~DvVIIDTaGrl~------~d~~lm~e-l~~i~~~~~-----pd~vlLVvDA~~gq~a~--~~a~~f~~~~~i~gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK------EDKALIEE-MKQISNVIH-----PHEVILVIDGTIGQQAY--NQALAFKEATPIGSI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS------CCHHHHHH-HHHHHHHHC-----CSEEEEEEEGGGGGGHH--HHHHHHHHSCTTEEE
T ss_pred HhCCCCEEEEECCCccc------chHHHHHH-HHHHHHhhc-----CceEEEEEeCCCchhHH--HHHHHHHhhCCCeEE
Confidence 77778999999886541 11122211 122222211 12334555444422222 1223332 1 13
Q ss_pred ccCCCCHHHHHHHHHHHHhhc-----------ccC--CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001309 967 MVNLPDAPNREKIIRVILAKE-----------ELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1033 (1103)
Q Consensus 967 ~l~lPd~eeR~eIL~~ll~~~-----------~l~--~dvdl~~LA~~TeGySg~DL~~L~~~Aa~~aireiie~~~~~~ 1033 (1103)
.+.--|...+...+..+.... .+. ...+.+.++...-| .+|+..|++.|....-.+.+.. +...
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~-~~~~ 321 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKE-EDIE 321 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHH-HHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHH-HHHH
Confidence 444455444433332322221 111 23456777777644 3588888888764322211000 0111
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 001309 1034 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1069 (1103)
Q Consensus 1034 ~l~~~~~~~~~~~~~~~~~r~Lt~eDF~~Ale~v~p 1069 (1103)
.... -..+.+||.+-++++..
T Consensus 322 --k~~~-------------~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 322 --RFLR-------------GKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp --HHHT-------------TCCCHHHHHHHHHHHHT
T ss_pred --HHhh-------------CCcCHHHHHHHHHHHHh
Confidence 1111 23788999998888754
No 258
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.60 E-value=0.0077 Score=63.38 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+..|+|.|+||+|||++++.|+..++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35799999999999999999999999877654
No 259
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.59 E-value=0.01 Score=59.52 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
...++|.||+|+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3569999999999999999999998866554
No 260
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.57 E-value=0.0078 Score=63.02 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
..|+|.|+||+|||++++.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999887765
No 261
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.53 E-value=0.0065 Score=61.64 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
++.-+.|.||+|+||||+++.|+...+...+.++..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3456999999999999999999988777777777544
No 262
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.50 E-value=0.019 Score=57.00 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=36.7
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeecc
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHT 597 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~ 597 (1103)
+..+++.+.. ..+|.||||||++.+.. ...++.+.|...++ .+++++|++++
T Consensus 103 ~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ii~~~~ 160 (187)
T 2p65_A 103 LKSILKEVQD--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELRCIGATT 160 (187)
T ss_dssp HHHHHHHHHH--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSCEEEEEC
T ss_pred HHHHHHHHHh--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh--cCCeeEEEecC
Confidence 4444444433 15789999999999642 13677777877777 47888999988
No 263
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.50 E-value=0.0099 Score=63.22 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.++-|+|.||||+||+|.|+.|++.++++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 34668999999999999999999999877653
No 264
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.46 E-value=0.0093 Score=62.76 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.|+|.||||+||+|.|+.||+.++++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999987654
No 265
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.46 E-value=0.041 Score=64.41 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 869 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~ 869 (1103)
..+..-++|.|+||+|||+|+..+|... |.++..++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3455569999999999999999987654 557777765
No 266
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.44 E-value=0.053 Score=58.88 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-++|+||+|+|||+|+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999998644
No 267
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.43 E-value=0.0081 Score=72.71 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
..++|.||||||||+++.+++..+ +.++..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 469999999999999999998765 56666554
No 268
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.42 E-value=0.15 Score=57.02 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=30.2
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-----------CCeEEEEeccC
Q 001309 344 CPRILLSGPAGSEIYQETLAKALAKHF-----------SARLLIVDSLL 381 (1103)
Q Consensus 344 s~rILLsgp~GsE~Yqe~LakALA~~f-----------~a~LL~lDs~~ 381 (1103)
.+-|||+||+|| .+.+||+++|+.+ +.+++.++...
T Consensus 45 ~~~vll~G~~G~--GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLFLGLTGT--GKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEEEECTTS--SHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEEECCCCC--CHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 467999999999 6999999999987 77777777543
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.41 E-value=0.059 Score=58.91 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 868 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~ 868 (1103)
.+..-++|.||||+|||+|++.+|... |.+++.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 344569999999999999999998765 44565554
No 270
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.40 E-value=0.012 Score=59.34 Aligned_cols=32 Identities=28% Similarity=0.132 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
-|.|.|++|+||||+++.+++.+ |++++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999999999988 898887763
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.39 E-value=0.012 Score=60.69 Aligned_cols=31 Identities=39% Similarity=0.758 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
++.-+.|.||+|+|||++++.|+..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3456999999999999999999999976544
No 272
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.38 E-value=0.27 Score=54.64 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccC-hhhHHHHHHHHhcC-CCCEEEEeeccC
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHTQ 598 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~-~~~~~~l~~~L~~l-~g~vvvIgs~~~ 598 (1103)
++.+++.+.. ...|.||+|||++.+.... .+....+...++.+ ..++.+|++++.
T Consensus 116 ~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 116 YRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 4455665543 2459999999999976543 66666777777665 447888888883
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0089 Score=62.58 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
..|+|.|+||+|||++++.+|..++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999766543
No 274
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.35 E-value=0.059 Score=62.91 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 869 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~ 869 (1103)
..+..-++|.|+||+|||+||..+|... +.+++.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3454569999999999999999987654 567777765
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.35 E-value=0.34 Score=57.58 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=51.1
Q ss_pred HHhhhhCCCeEEEeCCchhhH-HHHHHHHHhh---ch--hhhhcccchhHHHHHhhhCCCCccchhhhhhcc--------
Q 001309 647 KQISRLFPNKVTIQLPQDEAL-LSDWKQQLER---DV--ETLKGQSNIISIRSVLSRNGLDCVDLESLCIKD-------- 712 (1103)
Q Consensus 647 ~~l~~lf~~~i~i~~P~DeAL-lRRferq~e~---~L--pd~~gR~~Il~IhT~l~~~~l~~~~L~~La~~t-------- 712 (1103)
+++..+|...|.|++|+++.- ...+.+.... +. +..-....|..+......-.+++.-++.++...
T Consensus 167 ~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~ 246 (500)
T 3nbx_X 167 EALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPD 246 (500)
T ss_dssp HHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCC
Confidence 567788888899999987443 3333322210 11 111122344444443444445555555444333
Q ss_pred -CCCCHHHHHHHHhhhhhhccccc
Q 001309 713 -QTLTTEGVEKIVGWALSHHFMHC 735 (1103)
Q Consensus 713 -kg~sgadI~~Lv~~A~s~al~r~ 735 (1103)
.+.+...+.++++.|..+|..+.
T Consensus 247 ~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 247 APYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCccchhHHHHHHHHHHHHHhhcC
Confidence 47788888999999988887644
No 276
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.32 E-value=0.016 Score=58.50 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
+.-+.|.|++|+|||++++.++..+ |.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4568999999999999999999988 9999988753
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.30 E-value=0.065 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999998876
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.24 E-value=0.028 Score=61.21 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=43.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC--ccc--------cccccccHHHHHHHHHHHHhcCCeEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS--SIT--------SKWFGEGEKYVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg----~~fi~v~~s--~L~--------s~~~G~~e~~i~~lF~~A~~~~PsILf 900 (1103)
+..-++|.||+|+||||++++++.... ..++....+ .+. ...++.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 334689999999999999999987652 233222211 000 001111112335566666667899999
Q ss_pred Eccc
Q 001309 901 VDEV 904 (1103)
Q Consensus 901 IDEI 904 (1103)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9999
No 279
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.24 E-value=0.013 Score=61.15 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.|+||+||||+++.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887665
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.19 E-value=0.034 Score=74.48 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=59.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCc----------------cccccccccHHHHHHHHHHHHhcCCe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 897 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e---lg~~fi~v~~s~----------------L~s~~~G~~e~~i~~lF~~A~~~~Ps 897 (1103)
+-++|+||+|||||+||-.++.+ .|-....++... +.-......|+.+..+...++..+++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 44999999999999998877543 366777776543 23334566788999999999999999
Q ss_pred EEEEccccccccCCC
Q 001309 898 VVFVDEVDSMLGRRE 912 (1103)
Q Consensus 898 ILfIDEID~L~~~r~ 912 (1103)
+|+||.+..|.++..
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987643
No 281
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.15 E-value=0.041 Score=58.69 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
.++|+||+|+|||.++.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887776666543
No 282
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.12 E-value=0.14 Score=59.93 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------cc----------ccccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KW----------FGEGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s----------~~----------~G~~e~~i~~lF~~A 891 (1103)
++.-+++.||+|+||||++..+|..+ +..+..+++..... .. ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999998776 66666666432110 00 011222344555666
Q ss_pred HhcCCeEEEEcccccc
Q 001309 892 SKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L 907 (1103)
....+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6667899999988654
No 283
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.10 E-value=0.013 Score=65.95 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=31.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
..++|.||+|+|||+|++.+|+.++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999999888754
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.09 E-value=0.014 Score=59.54 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987653
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.09 E-value=0.015 Score=59.51 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 869 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v~~ 869 (1103)
+.-|.|.|++|+||||+++.+++.+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3569999999999999999999998 588877654
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.05 E-value=0.016 Score=60.32 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
..|.|.||+|+||||+++.++..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999977654
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.05 E-value=0.012 Score=67.08 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.+++|.|++|+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888744
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.03 E-value=0.0094 Score=60.06 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAG---ANFINISM 869 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~ 869 (1103)
-|+|.|+||+||||+++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 589999999999999999999885 33555543
No 289
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.01 E-value=0.015 Score=61.20 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766544
No 290
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.98 E-value=0.019 Score=58.21 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 839 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
|.|.|++|+||||+++.+++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 998876653
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.83 E-value=0.1 Score=61.13 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=27.2
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 345 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 345 ~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
+.+||.||+|| ..++||+++|+.++.++.-+.
T Consensus 51 ~~vLL~GppGt--GKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGT--GKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTS--SHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCC--cHHHHHHHHHHHhCCCeEEEE
Confidence 57999999999 699999999999877655443
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.82 E-value=0.012 Score=60.48 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|.|.|++|+|||++++.++. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887776554
No 293
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.78 E-value=0.02 Score=58.54 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|.|.|++|+|||++++.++..++++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998887644
No 294
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.74 E-value=0.029 Score=57.40 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGAN--FINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~--fi~v~ 868 (1103)
.-|+|.|+||+|||++++.++..++.. ++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec
Confidence 568999999999999999999998763 54443
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.74 E-value=0.029 Score=57.79 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 871 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~ 871 (1103)
++.-+.|.||+|+|||+++++++..+ |...+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 44568999999999999999999988 55545666433
No 296
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.74 E-value=0.067 Score=54.69 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776543
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.70 E-value=0.021 Score=58.24 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
+..|.|.|++|+|||++++.++.. |++++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 456999999999999999999998 87776543
No 298
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.70 E-value=0.025 Score=60.82 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
+...|.|.||+|+|||++++.||..+|+.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34569999999999999999999999987653
No 299
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.68 E-value=0.022 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
+..+.|.||+|+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999987654
No 300
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.66 E-value=0.076 Score=57.76 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001309 555 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 598 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~~ 598 (1103)
..+.||+|+|++. +. .+..+.|...++..++++++|+++|.
T Consensus 101 ~~~~vliiDe~~~-l~--~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 101 APFKIIFLDEADA-LT--ADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp CCCEEEEEETGGG-SC--HHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred CCceEEEEeCCCc-CC--HHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4578999999998 43 23445566677777788999998883
No 301
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.64 E-value=0.15 Score=59.80 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
..+..-++|.|+||+|||+||..+|... |.++..++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3454569999999999999999987665 6677777653
No 302
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.64 E-value=0.035 Score=63.48 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=43.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc-c--------ccc-cccccHHHHHHHHHHHHhcCCeEEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS-I--------TSK-WFGEGEKYVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg----~~fi~v~~s~-L--------~s~-~~G~~e~~i~~lF~~A~~~~PsILf 900 (1103)
+...++|.||+|+||||++++++..+. ..++.+..+- + ... .++.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 445699999999999999999987652 3343433211 0 000 0110111234455666667899999
Q ss_pred Ecccc
Q 001309 901 VDEVD 905 (1103)
Q Consensus 901 IDEID 905 (1103)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99993
No 303
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.61 E-value=0.11 Score=61.35 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 870 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s 870 (1103)
.+..-++|.|+||+|||+|+..+|... +.++..++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 344569999999999999999998765 4577777653
No 304
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.61 E-value=0.011 Score=60.76 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGAN 863 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~ 863 (1103)
+.-|.|.|++|+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4569999999999999999999987544
No 305
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.61 E-value=0.19 Score=52.67 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=65.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc---------ccccc-----------c-cc-----cHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---------ITSKW-----------F-GE-----GEKYVKAV 887 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~---------L~s~~-----------~-G~-----~e~~i~~l 887 (1103)
..|++++++|.|||++|-++|.++ |..+..+..-. +.... . .. .+......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 359999999999999999998766 77776663211 22221 0 00 12345556
Q ss_pred HHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhHHhhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc
Q 001309 888 FSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 963 (1103)
Q Consensus 888 F~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~l~~vl~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~ 963 (1103)
+..+++. ...+|+|||+-..+.-..- .. ..++ ..+.. .+...-||.|+|.+ ++.++..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~---~ev~----~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL--PL---EEVI----SALNA----RPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CH---HHHH----HHHHT----SCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC--CH---HHHH----HHHHh----CcCCCEEEEECCCC---cHHHHHhCc
Confidence 6666553 3689999999654221111 11 1122 22221 23567888888763 566666544
Q ss_pred cc
Q 001309 964 RR 965 (1103)
Q Consensus 964 ~~ 965 (1103)
.+
T Consensus 173 ~V 174 (196)
T 1g5t_A 173 TV 174 (196)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 306
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.54 E-value=0.44 Score=53.16 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=36.2
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcCC----CCEEEEeecc
Q 001309 542 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLP----SNVVVIGSHT 597 (1103)
Q Consensus 542 ~~~l~evl~~e~~~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~----g~vvvIgs~~ 597 (1103)
++.+.+.+.. ..+|.||+|||++.+ ..+....|...++.+. .++.||++++
T Consensus 113 ~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 113 LALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 4445555533 356999999999995 5666667777776665 4888888877
No 307
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.52 E-value=0.033 Score=62.90 Aligned_cols=67 Identities=28% Similarity=0.365 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCC
Q 001309 314 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 382 (1103)
Q Consensus 314 e~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~ 382 (1103)
+..+..|..+...|.+...............+.|||.||+|| ..++||||||+.++.+++.++.+.+
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGt--GKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS--GKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCC--CHHHHHHHHHHHcCCCEEEechHHh
Confidence 777888888887777665443344455566789999999999 6999999999999999999987644
No 308
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.51 E-value=0.12 Score=60.02 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=53.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-ccc
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 873 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s-~L~ 873 (1103)
.++++++-.......+..++ ..+..-++|.||+|+||||++++++..+. ..++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~---------------~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI---------------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH---------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHH---------------HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 35666665555555555542 12323589999999999999999998874 234443321 110
Q ss_pred c-----ccccc-cHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 874 S-----KWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 874 s-----~~~G~-~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
- ..+.. ...........+-+..|.++++.|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 00010 00112333444556789999999873
No 309
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.47 E-value=0.12 Score=57.77 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=37.0
Q ss_pred HHHHHHhhcc-CCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001309 544 ELFEVALNES-KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 597 (1103)
Q Consensus 544 ~l~evl~~e~-~~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~ 597 (1103)
.+++.+.... ...+.||+|||++. +. .+..+.|...|+..++++++|++++
T Consensus 106 ~l~~~~~~~~~~~~~~vliiDe~~~-l~--~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 106 DLLDNVQYAPARGRFKVYLIDEVHM-LS--RHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp HHHHHTTSCCSSSSSEEEEEECGGG-SC--HHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred HHHHHHhhccccCCeEEEEEECcch-hc--HHHHHHHHHHHhcCCCceEEEEEeC
Confidence 3444443322 25689999999998 43 4556778888998889999999988
No 310
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.47 E-value=0.028 Score=60.41 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
..+.|.||+|+|||++++.|+..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999977654
No 311
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.43 E-value=0.019 Score=59.67 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.|.|+|++|||||++++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4889999999999999999999898876644
No 312
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.35 E-value=0.014 Score=60.07 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+.-|+|.|++|+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999874
No 313
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=94.35 E-value=0.087 Score=50.20 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred ceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcce
Q 001309 4 AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSY 83 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~y 83 (1103)
-.++||++. ...+.|.-.|-..|+|+ +.-.+.. +.+-.+|..+ ..|||+.+.|+..+.|+.||.+-. .+|+|.|
T Consensus 29 g~~viGR~p--~t~I~DkrcSR~hv~L~-ad~~~~~-v~vk~lG~Np-~~vng~~l~k~~~~~L~~GD~leL-l~g~y~~ 102 (110)
T 2brf_A 29 QALVLGRGP--LTQVTDRKCSRTQVELV-ADPETRT-VAVKQLGVNP-STTGTQELKPGLEGSLGVGDTLYL-VNGLHPL 102 (110)
T ss_dssp CCEEECSBT--TTTBCCTTSCSSCEEEE-EETTTTE-EEEEECSSSC-CEEC-CBCCTTCEEEEETTCEEEE-ETTEEEE
T ss_pred CCEEEcCCC--CcccccccceeeeEEEE-EecCCCE-EEEEEcccCC-cEECCEEcCCCCEEEecCCCEEEE-ccCCeEE
Confidence 457899887 44589999999999998 5444444 3345778875 579999999999999999998744 6898888
Q ss_pred eee
Q 001309 84 IFQ 86 (1103)
Q Consensus 84 if~ 86 (1103)
-++
T Consensus 103 ~v~ 105 (110)
T 2brf_A 103 TLR 105 (110)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 314
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.30 E-value=0.031 Score=60.61 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..|.|.|++|+|||++++.+|..++.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 57999999999999999999999999877643
No 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.30 E-value=0.19 Score=64.43 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=34.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001309 803 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 803 I~G~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.+|.+..++.|.+.+.. ..+.+-+.|+|+.|.|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~-------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLE-------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHH-------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhc-------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 38899999999887752 012356899999999999999999853
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.30 E-value=0.025 Score=58.28 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.+.|.||+|+||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 588999999999999999998 88777643
No 317
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.25 E-value=0.019 Score=64.91 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
+-|+|.||+|+|||+|+..||+.++..++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4699999999999999999999999888887754
No 318
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.22 E-value=0.11 Score=52.22 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.6
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKA 855 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkA 855 (1103)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34589999999999999994
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.20 E-value=0.041 Score=58.92 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecCccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMSSIT 873 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~--------fi~v~~s~L~ 873 (1103)
.-|.|.|++|+|||++|+.|+..++++ ++.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 569999999999999999999999876 3456666554
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.08 E-value=0.056 Score=54.71 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
++.-++|.|++|+|||++++.++..+ +.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 34569999999999999999999887 4556566543
No 321
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.00 E-value=0.2 Score=55.40 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 870 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s 870 (1103)
++..++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45679999999999999999998665 5566666653
No 322
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.97 E-value=0.036 Score=62.06 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
+.-++|.||+|+|||+||..+|+.++..++.+|.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 356899999999999999999999998888877644
No 323
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.95 E-value=0.14 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHHH-HHHHH
Q 001309 837 KGILLFGPPGTGKTMLAK-AVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAk-AIA~e 859 (1103)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 479999999999998643 34444
No 324
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.84 E-value=0.039 Score=62.11 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccc-----c---cccccHHHHHHHHHHHHhcCCeEEEEcccc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS-----K---WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 905 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~L~s-----~---~~G~~e~~i~~lF~~A~~~~PsILfIDEID 905 (1103)
..++|.||+|+|||||+++++.... .-.+.++...... . ++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998763 2345554322110 0 110012234455666777889999999984
No 325
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.82 E-value=0.049 Score=57.65 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+..|.|.|++|+|||++++.++..+|++++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 35699999999999999999999999877643
No 326
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=93.74 E-value=0.15 Score=50.42 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=61.0
Q ss_pred ceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcce
Q 001309 4 AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSY 83 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~y 83 (1103)
..++||++. ...+.|.-.|-..|+|+ +.-.+..|- +=.+|..+ ..|||+.+.|+..+.|+-||.+-. .+|+|.|
T Consensus 29 g~vvIGRgP--et~ItDkRcSR~qv~L~-ad~~~g~V~-Vk~lG~NP-~~vng~~L~k~~~~~L~~GD~LeL-l~g~y~f 102 (143)
T 1yj5_C 29 QALVLGRGP--LTQVTDRKCSRNQVELI-ADPESRTVA-VKQLGVNP-STVGVHELKPGLSGSLSLGDVLYL-VNGLYPL 102 (143)
T ss_dssp CEEEECSBT--TTTBCCSSSCSSCEEEE-EETTTTEEE-EEECSSSC-CEETTEECCTTCEEEECTTCEEES-SSSCSEE
T ss_pred CCEEEcCCC--ccccccccccceeEEEE-EecCCCeEE-EEEcccCC-cEECCEEecCCCEEEecCCCEEEE-ecCCceE
Confidence 467899887 55689999999999998 443444433 34667774 578999999999999999998644 7899998
Q ss_pred eeec
Q 001309 84 IFQQ 87 (1103)
Q Consensus 84 if~~ 87 (1103)
-+.-
T Consensus 103 ~V~f 106 (143)
T 1yj5_C 103 TLRW 106 (143)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7763
No 327
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.70 E-value=0.05 Score=56.53 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
.-|.|.|++|+|||++++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88776654
No 328
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.67 E-value=0.048 Score=56.56 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
..|.|.|++|+|||++++.++..+|++++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46999999999999999999999998776543
No 329
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.62 E-value=0.034 Score=71.02 Aligned_cols=77 Identities=27% Similarity=0.329 Sum_probs=61.4
Q ss_pred CCCCCcccccccCcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeccCCCCCCCCCCCCC
Q 001309 435 ALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFC 514 (1103)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~ 514 (1103)
+..++..+..-..+++|.-||||.||..+. ..+.|.||.|+..--.+..--+-|.||.+.-.|++||+.|
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~VqdsG----------~VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQDSG----------KVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEecCCC----------CCccccceEEEEEecCCCceEEEEEeccCccCCCcccccc
Confidence 445555555556778899999999998754 2478999999887555545569999999999999999999
Q ss_pred CCCCCcc
Q 001309 515 EDDHGFF 521 (1103)
Q Consensus 515 ~~~~~~~ 521 (1103)
....|.-
T Consensus 1120 s~~RG~~ 1126 (1155)
T 3pie_A 1120 QTRRGLG 1126 (1155)
T ss_pred ccccccc
Confidence 9998854
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.60 E-value=0.038 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
++.-++|.||||+|||++++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345699999999999999999999884
No 331
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.59 E-value=0.21 Score=51.90 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC--------cccccccccc-----HHHHHHHHHHHHhcCCeEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s--------~L~s~~~G~~-----e~~i~~lF~~A~~~~PsILf 900 (1103)
.-.+++||+|+|||+.+-.+++.+ +..+..+... .+.+. .|.. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 458999999999999888887765 6666555311 01111 1100 0001244544432 357999
Q ss_pred Ecccccc
Q 001309 901 VDEVDSM 907 (1103)
Q Consensus 901 IDEID~L 907 (1103)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999876
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.50 E-value=0.18 Score=56.99 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 833 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 833 ~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
..+..-++|.|+||+|||+||..+|... +.++..++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3454569999999999999999998764 677776665
No 333
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.48 E-value=0.36 Score=49.86 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHH-HHHHHHH
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTML-AKAVATE 859 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~L-AkAIA~e 859 (1103)
..+|+++.-.+.+.+.+.+.= +..+..+....+ ....+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 457888877777777776642 111111111000 01125799999999999986 3334443
No 334
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.40 E-value=0.038 Score=62.57 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
.-|+|.||+|+|||+||..||..++..++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3689999999999999999999999777766643
No 335
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.39 E-value=0.044 Score=59.85 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~v 867 (1103)
.-|+|.|+||+|||++|+.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6555533
No 336
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.38 E-value=0.039 Score=60.47 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
+.-|.|+|++|+||||+|+.++ .+|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3569999999999999999999 688776554
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.34 E-value=0.029 Score=57.85 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA-GANFIN 866 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el-g~~fi~ 866 (1103)
+.-+.|.|++|+|||++++.++..+ ++.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3458999999999999999999877 555444
No 338
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.15 E-value=0.068 Score=61.95 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
+.-|+|+|+||+|||++|+.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568999999999999999999998866554
No 339
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.13 E-value=0.066 Score=55.60 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 871 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~ 871 (1103)
+.-++|.|++|+|||++++.++..+ |.+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999876 45677776433
No 340
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.10 E-value=0.27 Score=61.50 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=34.0
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChh-hhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001309 799 TFDDIGALENVKDTLKELVMLPLQRPE-LFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 799 sfddI~G~e~ik~~L~e~V~~pl~~pe-~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.|+++.-.+...+.+.+.-..|..... .+.. . ......+++.||+|+|||+++..++..
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~-l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLK-L-YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-H-HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHH-H-HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 466666566666666554444432111 1100 0 111246999999999999977777544
No 341
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.05 E-value=0.048 Score=61.17 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
+-++|.||+|+|||+|+..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998877776654
No 342
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.01 E-value=0.087 Score=59.65 Aligned_cols=68 Identities=31% Similarity=0.439 Sum_probs=52.8
Q ss_pred hhHHHHHHHhhhhhccccccccc---------------cCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001309 314 DITKNVLIASTYVHLKCNNFAKY---------------ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 378 (1103)
Q Consensus 314 e~tk~~L~~~~~~hL~~~~~~k~---------------~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 378 (1103)
++.|..|..+.+.|+++.....+ ........+.|||.||+|| ...+|||+||+.++.++..+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~Gt--GKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGS--GKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 88899999998888776442110 0123445678999999999 699999999999999999999
Q ss_pred ccCCC
Q 001309 379 SLLLP 383 (1103)
Q Consensus 379 s~~~~ 383 (1103)
...+.
T Consensus 105 ~~~~~ 109 (376)
T 1um8_A 105 ATSLT 109 (376)
T ss_dssp GGGCC
T ss_pred chhhh
Confidence 77653
No 343
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.94 E-value=0.41 Score=58.48 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccccHH
Q 001309 806 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK 882 (1103)
Q Consensus 806 ~e~ik~~L~e~V~~pl~~pe~f~~~~l~~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~~~G~~e~ 882 (1103)
.+.+++.+...+.. + .-.||.||||||||+++..+..++ +..+..+..+ ..
T Consensus 191 N~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T----------N~ 244 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS----------NI 244 (646)
T ss_dssp CHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS----------HH
T ss_pred CHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc----------hH
Confidence 56777777665531 1 247999999999998555544333 5555555433 23
Q ss_pred HHHHHHHHHHhcCCeEEE
Q 001309 883 YVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 883 ~i~~lF~~A~~~~PsILf 900 (1103)
++..+.+........++=
T Consensus 245 AvD~i~erL~~~~~~ilR 262 (646)
T 4b3f_X 245 AVDNLVERLALCKQRILR 262 (646)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcCCceEE
Confidence 445555444444444443
No 344
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.92 E-value=0.31 Score=50.99 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LAk 854 (1103)
..+|+++.-.+.+.+.|.+.- +..+..+....+ ....+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 346888877777777776531 111111111000 0112579999999999998543
No 345
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.91 E-value=0.065 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGA 862 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~ 862 (1103)
-+.|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 346
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.88 E-value=0.88 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
++.-++|.||+|+|||||++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 44568999999999999999999876
No 347
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.85 E-value=0.076 Score=63.36 Aligned_cols=69 Identities=26% Similarity=0.395 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCc-cccc---c--------ccccHHHHHHHHHHHHhcCCeEEEEc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITSK---W--------FGEGEKYVKAVFSLASKIAPSVVFVD 902 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s~-L~s~---~--------~G~~e~~i~~lF~~A~~~~PsILfID 902 (1103)
..++|.||+|+||||++++++.... ...+.+.... +.-. + .+.....+..+...+-+..|.+|+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999988773 3455554332 2100 0 01111124455556667889999999
Q ss_pred ccc
Q 001309 903 EVD 905 (1103)
Q Consensus 903 EID 905 (1103)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 983
No 348
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=92.82 E-value=0.12 Score=49.96 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=60.5
Q ss_pred ceeeeecccccceeecCCCCcccceEEEEeecCCCceeEEEEecCcceEEEcCeeecCCceEEeecCCeEEecCCCCcce
Q 001309 4 AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSY 83 (1103)
Q Consensus 4 ~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~~gde~~f~~~~~~~y 83 (1103)
..++||++. ...+.|.-.|-..|+|+ +.-....|- +=.+|..+ ..|||+.+.|+..+.|+-||.+-. .+|+|.|
T Consensus 36 g~~viGRgp--~t~I~DkrcSR~qv~L~-ad~~~~~v~-vk~lG~NP-~~vng~~l~k~~~~~L~~GD~l~L-l~g~y~~ 109 (119)
T 1ujx_A 36 QALVLGRGP--LTQVTDRKCSRNQVELI-ADPESRTVA-VKQLGVNP-STVGVQELKPGLSGSLSLGDVLYL-VNGLYPL 109 (119)
T ss_dssp CCEEESBBT--TTTBCCTTSCTTSEEEE-EETTTTEEE-EEECSSSC-CBSSSSBCCTTCEEEEETTCCCBC-BTTBSCC
T ss_pred CCEEEcCCC--CcccccccccceeEEEE-EecCCCEEE-EEEcccCC-cEECCEEecCCCEEEecCCCEEEE-ecCCeEE
Confidence 467899887 55689999999999998 544444433 34667774 578999999999999999998633 6899988
Q ss_pred eee
Q 001309 84 IFQ 86 (1103)
Q Consensus 84 if~ 86 (1103)
-++
T Consensus 110 ~v~ 112 (119)
T 1ujx_A 110 TLR 112 (119)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 349
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.82 E-value=0.067 Score=55.76 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
-|.|.|++|||||++++.+|+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999984
No 350
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.80 E-value=0.063 Score=62.13 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 869 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~ 869 (1103)
+-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 468999999999999999999999887776654
No 351
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.79 E-value=0.43 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.3
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA 857 (1103)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998666553
No 352
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.79 E-value=0.15 Score=55.59 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001309 556 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 597 (1103)
Q Consensus 556 ~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~ 597 (1103)
.+.||+|+|++.+ . .+..+.|...++..++++++|.+++
T Consensus 107 ~~~viiiDe~~~l-~--~~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSM-T--AGAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGS-C--HHHHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccC-C--HHHHHHHHHHHhccCCCceEEEEeC
Confidence 4789999999984 3 2334556777888888888888887
No 353
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.74 E-value=0.14 Score=59.64 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-----CCeEEEEe
Q 001309 344 CPRILLSGPAGSEIYQETLAKALAKHF-----SARLLIVD 378 (1103)
Q Consensus 344 s~rILLsgp~GsE~Yqe~LakALA~~f-----~a~LL~lD 378 (1103)
.+-+||+||+|+ ...+||+|+|++. +.+++.++
T Consensus 130 ~~~lll~Gp~G~--GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGL--GKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSS--SHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 567999999999 6999999999987 45544443
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.72 E-value=0.059 Score=56.04 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
++.-+.|.||+|+|||+|++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445689999999999999999998874
No 355
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.72 E-value=0.067 Score=54.57 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+.-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999876
No 356
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.65 E-value=0.07 Score=54.11 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.-+.|.||+|+|||+|++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 357
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.64 E-value=0.17 Score=52.87 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=41.9
Q ss_pred CceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEecCccccccccccHH------------HHHHHHHHHHhcCCeEEE
Q 001309 836 CKGILLFGPPGTGKT-MLAKAVATEA--GANFINISMSSITSKWFGEGEK------------YVKAVFSLASKIAPSVVF 900 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT-~LAkAIA~el--g~~fi~v~~s~L~s~~~G~~e~------------~i~~lF~~A~~~~PsILf 900 (1103)
..=.+++||.|+||| .|.+++.+.. +..++.+... +...+...... ....++... ....+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEE
Confidence 345899999999999 7999987654 6777777643 11111100000 111223322 2357999
Q ss_pred Ecccccc
Q 001309 901 VDEVDSM 907 (1103)
Q Consensus 901 IDEID~L 907 (1103)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999876
No 358
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.52 E-value=0.074 Score=54.79 Aligned_cols=27 Identities=37% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
++.-+.|.||+|+|||||++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999999887
No 359
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.42 E-value=0.73 Score=47.47 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHH
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.+|++++-.+.+.+.|.+.= +..+..+....+ ....+.+++.+|+|+|||..+-..+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 35777766677777665521 111111110000 001246999999999999866554443
No 360
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.31 E-value=0.19 Score=59.97 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 871 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~ 871 (1103)
.-|+|.|.||+|||++|+.++.++ +.....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 458999999999999999999988 44555556544
No 361
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.31 E-value=0.3 Score=49.67 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAk 854 (1103)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997444
No 362
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.28 E-value=0.086 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+.-+.|.||+|+|||||++.|+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34589999999999999999998753
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.21 E-value=0.091 Score=54.46 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGAN 863 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~ 863 (1103)
+.|+|.||+|+|||+|++++..+..-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 349999999999999999998886433
No 364
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.17 E-value=0.29 Score=58.22 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------------------ccc-cccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------KWF-GEGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s-------------------~~~-G~~e~~i~~lF~~A 891 (1103)
++..|+|.|++|+|||+++.++|..+ |..+..+++..... ... ......+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999776 66666666522110 000 11122234445555
Q ss_pred HhcCCeEEEEcccccc
Q 001309 892 SKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L 907 (1103)
.+....++|||-.-.+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5455679999987654
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.16 E-value=0.055 Score=56.99 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 869 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~ 869 (1103)
..++++|.||+|+|||+||.++++... .++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 346799999999999999999998876 6655443
No 366
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.04 E-value=0.4 Score=50.84 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36799999999999887776655 66666665
No 367
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.01 E-value=0.34 Score=56.51 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=48.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc----------------cc----cccHHHHHHHHH
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------WF----GEGEKYVKAVFS 889 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~s~L~s~----------------~~----G~~e~~i~~lF~ 889 (1103)
.+++.|++.|++|+|||+++..+|..+ |..+..+++...... +. ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345779999999999999999998665 677777776532111 00 011233355666
Q ss_pred HHHhcCCeEEEEcccccc
Q 001309 890 LASKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 890 ~A~~~~PsILfIDEID~L 907 (1103)
.+......+++||=.-.+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 666555689999876433
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.00 E-value=0.53 Score=52.11 Aligned_cols=72 Identities=19% Similarity=0.086 Sum_probs=46.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------c---c-cccHHHHHHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------W---F-GEGEKYVKAVFSLAS 892 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----------------~---~-G~~e~~i~~lF~~A~ 892 (1103)
+.-+++.|++|+|||+++..+|..+ +..+..+++...... + . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998776 666666665421100 0 0 112233445666665
Q ss_pred hcCCeEEEEcccccc
Q 001309 893 KIAPSVVFVDEVDSM 907 (1103)
Q Consensus 893 ~~~PsILfIDEID~L 907 (1103)
+....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556689999986543
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.88 E-value=0.16 Score=52.39 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
+.-+.|.|++|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3568999999999999999999876 6666666543
No 370
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.84 E-value=0.38 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
++.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45669999999999999999999776
No 371
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.71 E-value=1.6 Score=48.75 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
.++.-++|.|++|+|||+++..+|..+ +..+..+++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345679999999999999999998766 5666666553
No 372
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.70 E-value=0.092 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445689999999999999999998874
No 373
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.51 E-value=0.5 Score=52.18 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------c--------cc-----cccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K--------WF-----GEGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s-------~--------~~-----G~~e~~i~~lF~~A 891 (1103)
++.-+.+.|++|+|||+++..+|..+ +..+..+++..... . .+ .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44668889999999999999998765 55665555421100 0 00 01122334556666
Q ss_pred HhcCCeEEEEcccccc
Q 001309 892 SKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L 907 (1103)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567899999998543
No 374
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.47 E-value=0.1 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.+.+.|.||+|+|||+|++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35699999999999999999988763
No 375
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.22 E-value=0.91 Score=52.87 Aligned_cols=73 Identities=21% Similarity=0.157 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------cc-c---ccHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WF-G---EGEKYVKAVFSLA 891 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L~s~----------------~~-G---~~e~~i~~lF~~A 891 (1103)
++..+++.|++|+|||+++..+|..+ +..+..+++...... +. + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876 556666665321100 00 0 1122335566666
Q ss_pred HhcCCeEEEEcccccc
Q 001309 892 SKIAPSVVFVDEVDSM 907 (1103)
Q Consensus 892 ~~~~PsILfIDEID~L 907 (1103)
+.....+++||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5455679999866443
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.16 E-value=0.063 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 377
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.15 E-value=0.12 Score=52.59 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 378
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.02 E-value=0.16 Score=62.02 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
.-|+|+|.||+||||+|++++..+ |.+++.++..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 569999999999999999999998 9999988743
No 379
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.02 E-value=0.5 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
..-++|.||.|+|||++.+.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34589999999999999999863
No 380
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=91.02 E-value=0.52 Score=52.56 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=55.8
Q ss_pred ceeeeecccccc---eeecCCCCcccceEEEEee-------cCCCceeEEEEecCcceEEEcCeeecCCceEEee-cCCe
Q 001309 4 AVFTVGHNRQCD---LYLKDPSISKNLCRLRRIE-------NGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLR-GGDE 72 (1103)
Q Consensus 4 ~~~tvg~~~~~~---~~l~d~~~~~~~c~l~~~~-------~~~~~~a~le~~g~~~~v~vng~~~~~~~~~~l~-~gde 72 (1103)
..|+||+.+.++ +.+.|++||-.++.|+--. ..+.+...++=.|+|==..|||..++. .+..|. .||+
T Consensus 21 g~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~-~~~~L~~dgd~ 99 (325)
T 3huf_A 21 GTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQ-NGDSYKEKDLK 99 (325)
T ss_dssp EEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCT-TCEEECSSEEE
T ss_pred CeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCC-ceeeecCCCCE
Confidence 349999976532 5899999999999997421 122344667777877557899999965 455665 6999
Q ss_pred EEecCCCC
Q 001309 73 LVFSPSGK 80 (1103)
Q Consensus 73 ~~f~~~~~ 80 (1103)
|.||....
T Consensus 100 I~fG~~~~ 107 (325)
T 3huf_A 100 IQLGKCPF 107 (325)
T ss_dssp EEETTCSS
T ss_pred EEecCCcc
Confidence 99997754
No 381
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.98 E-value=0.16 Score=54.50 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINI 867 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v 867 (1103)
..+-|.|+||+|||++|+.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3578999999999999999999999887754
No 382
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.82 E-value=0.21 Score=50.94 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001309 555 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 598 (1103)
Q Consensus 555 ~~p~Ilf~~d~e~~l~~~~~~~~~l~~~L~~l~g~vvvIgs~~~ 598 (1103)
..|.||+|||++.+ ..+..+.|...|+..+.++++|++++.
T Consensus 125 ~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 125 GRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp SSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred CCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 67899999999994 345566777888888888888888873
No 383
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.76 E-value=1 Score=53.54 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----cc------------------cc----c--cccHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TS------------------KW----F--GEGEKY 883 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s~L----~s------------------~~----~--G~~e~~ 883 (1103)
+..-++|.||+|+|||+|++.++... |-.++.+...+- .. .+ . -.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 44569999999999999999998654 444555543220 00 00 0 023445
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q 001309 884 VKAVFSLASKIAPSVVFVDEVDSML 908 (1103)
Q Consensus 884 i~~lF~~A~~~~PsILfIDEID~L~ 908 (1103)
.+.++..+....|.+|+||=+..|.
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHH
Confidence 5666777777889999999766663
No 384
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.74 E-value=0.15 Score=54.24 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFIN 866 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~ 866 (1103)
.-|.|.|++|||||++++.+|+.+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 458999999999999999999999999865
No 385
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.70 E-value=0.18 Score=58.95 Aligned_cols=36 Identities=33% Similarity=0.321 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 870 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~s 870 (1103)
++..|+|.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999998876 5666666654
No 386
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.50 E-value=0.5 Score=49.08 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAk 854 (1103)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 387
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.30 E-value=0.22 Score=58.66 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 369999999999999999887654
No 388
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.27 E-value=0.46 Score=50.10 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LAk 854 (1103)
..+|+++.-.+.+.+.+.+. .+..+..+....+ ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 45788877667776666542 1111111111000 0012579999999999998643
No 389
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.21 E-value=1.2 Score=52.84 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 869 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAI--A~el--g~~fi~v~~ 869 (1103)
.+..-++|.||+|+|||+|++.+ +... +...+.++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34467999999999999999994 3322 334455544
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.11 E-value=0.18 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 391
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.04 E-value=0.17 Score=52.28 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001309 839 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 871 (1103)
Q Consensus 839 VLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s~ 871 (1103)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999987 88888887654
No 392
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.02 E-value=0.2 Score=53.10 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINI 867 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v 867 (1103)
+.-|.|.|++|+||||+++.++..++ ..++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 35589999999999999999999986 455443
No 393
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.98 E-value=0.51 Score=48.77 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAk 854 (1103)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.73 E-value=0.36 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
++.-+.|.||+|+||||+++.+|..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999876
No 395
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.55 E-value=0.67 Score=49.33 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAk 854 (1103)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998543
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.54 E-value=0.16 Score=56.10 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI 872 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~~s~L 872 (1103)
.-|.|.||+|+||||+|+.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3589999999999999999998775 44555665544
No 397
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.50 E-value=0.24 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||.|+|||+|++.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 43458999999999999999999987
No 398
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.50 E-value=0.22 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
..-+.|.||+|+|||+|++.|+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998874
No 399
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.47 E-value=0.33 Score=55.11 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=44.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc----c---ccc-c-------cHHHHHHHHHHHHhcCCe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS----K---WFG-E-------GEKYVKAVFSLASKIAPS 897 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg--~~fi~v~~s-~L~s----~---~~G-~-------~e~~i~~lF~~A~~~~Ps 897 (1103)
...++|.||+|+|||||+++++.... .-.+.++.. ++.. . ++- . ....++..+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 35799999999999999999998763 234444421 1110 0 110 0 111245566666677889
Q ss_pred EEEEcccc
Q 001309 898 VVFVDEVD 905 (1103)
Q Consensus 898 ILfIDEID 905 (1103)
+++++|+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 99999984
No 400
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.44 E-value=1.4 Score=54.24 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=16.5
Q ss_pred CceEEEEcCCCChHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAk 854 (1103)
..++++.||+|+|||..+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3689999999999998773
No 401
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.43 E-value=0.21 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||+|+|||+|++.|+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33458999999999999999999876
No 402
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.41 E-value=0.71 Score=53.32 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
...++|+||+|+|||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3579999999999999999998764
No 403
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.35 E-value=1.2 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+++++.+|+|+|||..+-..+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 47999999999999876665543
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.29 E-value=1.1 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..|+|.|++|+|||+|+.++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999999753
No 405
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.28 E-value=0.24 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGAN 863 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~ 863 (1103)
.-+-|.||+|+|||||++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 458899999999999999999988754
No 406
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.01 E-value=0.24 Score=52.33 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||+|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345689999999999999999998764
No 407
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.78 E-value=0.86 Score=51.42 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
...|.|.|+||+|||+|+.+++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3579999999999999999998776 55554444
No 408
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.65 E-value=0.47 Score=48.44 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
+-+.|.|++|+|||+|+..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999998876 45555444
No 409
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.57 E-value=0.34 Score=50.00 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANF 864 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~f 864 (1103)
...++||.|++|+|||++|.++... |..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 3468999999999999999999874 4443
No 410
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.57 E-value=0.46 Score=52.38 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
++.-|.|.||+|+|||||++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345689999999999999999998875
No 411
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.50 E-value=1 Score=53.99 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.++||.+|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 578999999999999887776554
No 412
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.39 E-value=2 Score=53.96 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+..-++|.||.|+|||++.+.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456999999999999999999754
No 413
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.47 Score=47.43 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+...|++.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998653
No 414
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.35 E-value=1.1 Score=46.79 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHH
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLA 853 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LA 853 (1103)
..+|+++.-.+.+.+.|.+.= +..+.-+....+ ....+.+++.+|+|+|||..+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 346888776677777665521 111111110000 011257999999999999863
No 415
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.28 E-value=2.3 Score=45.24 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
+...|+|.|.+|+|||+|+.++..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 345799999999999999999864
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.26 E-value=0.33 Score=51.35 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.-|.|.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999983
No 417
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.17 E-value=0.34 Score=58.61 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 871 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg----~~fi~v~~s~ 871 (1103)
.-|+|.|++|+|||++|++++..++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 5689999999999999999999885 7788887543
No 418
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.14 E-value=1.9 Score=48.19 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHH
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LAkAIA 857 (1103)
..+|+++.-.+.+.+.|.+.= +..+.-+....+ ....+.+++.+|+|+|||..+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346888776777776665521 111111100000 0012469999999999998654433
No 419
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.11 E-value=0.31 Score=54.39 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 834 KPCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 834 ~p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.+...+.|.||+|+|||+|++.|+..+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 3445699999999999999999998873
No 420
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.08 E-value=1.1 Score=57.18 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVA 857 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA 857 (1103)
.-++|.||.|+|||++.+.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999984
No 421
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.01 E-value=0.14 Score=55.04 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA-GANF 864 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el-g~~f 864 (1103)
++.-|.|.|++|+||||+++.|+..+ +..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999998 4333
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.96 E-value=0.44 Score=48.54 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=48.5
Q ss_pred HHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHH
Q 001309 288 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 367 (1103)
Q Consensus 288 ~~~l~~~i~~~~~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA 367 (1103)
+..++..-++.+--..|||+|-+. +.+.+.++..+.. .+.. +... ...+.|||.||+|| .+.+||+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~l~G~~Gt--GKT~la~~i~ 75 (202)
T 2w58_A 7 ESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRFAER-FVAE-----YEPG--KKMKGLYLHGSFGV--GKTYLLAAIA 75 (202)
T ss_dssp HHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHHHHH-HHHH-----CCSS--CCCCEEEEECSTTS--SHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHHHHH-HHHH-----hhhc--cCCCeEEEECCCCC--CHHHHHHHHH
Confidence 344556666666567799998654 3233333332211 1111 1000 01278999999999 6999999999
Q ss_pred hhc---CCeEEEEec
Q 001309 368 KHF---SARLLIVDS 379 (1103)
Q Consensus 368 ~~f---~a~LL~lDs 379 (1103)
+++ +.+.+.++.
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 76 NELAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHTTTCCEEEEEH
T ss_pred HHHHHcCCeEEEEEh
Confidence 988 455555543
No 423
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.94 E-value=3.1 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
+.+++.+|+|+|||..+-..+.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999986644433
No 424
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.89 E-value=1.9 Score=53.04 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.2
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKA 855 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkA 855 (1103)
..++++.||+|+|||+.+..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 46899999999999998743
No 425
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.85 E-value=0.64 Score=47.87 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhcC
Q 001309 343 MCPRILLSGPAGSEIYQETLAKALAKHFS 371 (1103)
Q Consensus 343 ~s~rILLsgp~GsE~Yqe~LakALA~~f~ 371 (1103)
..+.|||+||+|| .+.+||+++|+.+.
T Consensus 51 ~~~~~ll~G~~G~--GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKS--GRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTS--SHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 3578999999999 69999999998775
No 426
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.75 E-value=0.2 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=16.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHH-HHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVA-TEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA-~elg 861 (1103)
+..-+.|.||+|+|||+|++.|+ ....
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 33458999999999999999999 7653
No 427
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.71 E-value=0.39 Score=55.71 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 870 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~~s 870 (1103)
.+||.+|+|+|||..+-.++...+.+++.+-..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888887777666554
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.60 E-value=0.62 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
++.-+.|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44569999999999999999999876
No 429
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.32 E-value=0.69 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 430
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.26 E-value=1.4 Score=49.71 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 869 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el----g~~fi~v~~ 869 (1103)
+++|.+|+|+|||..+-.++... +..++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999887776554 555555544
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.18 E-value=0.56 Score=49.37 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
.-|.|.|++|+|||++++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 458899999999999999999887 46665544
No 432
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.99 E-value=0.35 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001309 838 GILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
-.+|+||.|+|||+|++||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988775
No 433
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.90 E-value=0.4 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
++.-+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 434
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.70 E-value=0.4 Score=53.43 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345589999999999999999998763
No 435
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.66 E-value=0.67 Score=52.65 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAV 856 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAI 856 (1103)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999944443
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.57 E-value=0.35 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+.-+-|.||+|+|||||++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34589999999999999999998775
No 437
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=86.47 E-value=0.58 Score=56.96 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..+|.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999877776554
No 438
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.39 E-value=0.24 Score=58.12 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg---~~fi~v~ 868 (1103)
+..|+|.|.||+|||++++.++..++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 35699999999999999999999874 3444444
No 439
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.24 E-value=0.91 Score=48.39 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=39.2
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcC---CeEEEEe
Q 001309 302 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVD 378 (1103)
Q Consensus 302 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~---a~LL~lD 378 (1103)
+.||++|- --|+..+.++..+..+ .....-|||.||+|| -+++||||+|++.. .+++.++
T Consensus 2 ~~~f~~~i-g~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~Gt--GKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 2 AEYKDNLL-GEANSFLEVLEQVSHL--------------APLDKPVLIIGERGT--GKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp ---------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTS--CHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred Ccccccce-eCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCC--cHHHHHHHHHHhcCccCCCeEEEe
Confidence 35788874 3455555555433321 012367999999999 69999999999875 6788888
Q ss_pred ccCC
Q 001309 379 SLLL 382 (1103)
Q Consensus 379 s~~~ 382 (1103)
.+.+
T Consensus 65 ~~~~ 68 (265)
T 2bjv_A 65 CAAL 68 (265)
T ss_dssp GGGS
T ss_pred cCCC
Confidence 7654
No 440
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.17 E-value=0.51 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+...|++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999753
No 441
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.08 E-value=0.51 Score=45.96 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=32.2
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEeccCCCC
Q 001309 343 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 384 (1103)
Q Consensus 343 ~s~rILLsgp~GsE~Yqe~LakALA~~f---~a~LL~lDs~~~~g 384 (1103)
...-|||.||+|| -+++||||++++. +.+++ +|...+..
T Consensus 23 ~~~~vll~G~~Gt--GKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 23 TDIAVWLYGAPGT--GRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp CCSCEEEESSTTS--SHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 4456999999999 6999999999987 77887 88766544
No 442
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.81 E-value=0.39 Score=51.24 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||+|+|||||++.|+...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44568999999999999999998654
No 443
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.80 E-value=0.45 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..+++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 444
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.74 E-value=0.52 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.-+.|.|++|+|||+|++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998765
No 445
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.68 E-value=1.2 Score=50.05 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHH
Q 001309 797 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKA 855 (1103)
Q Consensus 797 ~~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~~~l--~~p~~gVLL~GPpGTGKT~LAkA 855 (1103)
..+|+++.-.+.+.+.|.+.= +..+..+....+ ....+.+++.+|+|+|||..+-.
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 457777777777777765521 111111111000 01124699999999999986443
No 446
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.66 E-value=0.51 Score=48.35 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 447
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.63 E-value=0.42 Score=50.49 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
-.|-|+|..|||||++++.++. +|++++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3589999999999999999988 999887655
No 448
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.60 E-value=0.61 Score=52.30 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.+.-+.|.||+|+||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345689999999999999999998875
No 449
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.58 E-value=0.4 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||+|+|||||++.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998654
No 450
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.55 E-value=0.54 Score=48.33 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
..++|.|++|+|||+|+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998863
No 451
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.50 E-value=0.82 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999875
No 452
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.38 E-value=1.5 Score=49.14 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||||+|||+|.++++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33568999999999999999998765
No 453
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.29 E-value=1.6 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.9
Q ss_pred ceEEEEcCCCChHHHHH-HHHH
Q 001309 837 KGILLFGPPGTGKTMLA-KAVA 857 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LA-kAIA 857 (1103)
+.+|+.||+|+|||..+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999965 4443
No 454
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.20 E-value=2 Score=42.84 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..|+|.|++|+|||+|+.++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 455
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.18 E-value=0.85 Score=52.97 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhc----CCCCCCCceEEEEcCCCChHHHHH
Q 001309 798 VTFDDIGALENVKDTLKELVMLPLQRPELFCK----GQLTKPCKGILLFGPPGTGKTMLA 853 (1103)
Q Consensus 798 ~sfddI~G~e~ik~~L~e~V~~pl~~pe~f~~----~~l~~p~~gVLL~GPpGTGKT~LA 853 (1103)
.+|+++.-.+.+.+.|.+. -+..|..+.. .-+..+.+.+|+.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 4677777777776666541 1111111100 001123468999999999999863
No 456
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.07 E-value=0.37 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||+|+|||||++.|+...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458899999999999999998654
No 457
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.93 E-value=0.75 Score=49.01 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 868 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el-------g~~fi~v~ 868 (1103)
..-|.|.|++|+|||++++.+++.+ +.+++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 3458999999999999999999887 55665444
No 458
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.57 E-value=0.71 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
....|+|.|++|+|||+|+.++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999999975
No 459
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.56 E-value=1 Score=47.62 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~~fi~v~ 868 (1103)
.-|.|.|++|+|||++++.++..++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 46899999999999999999999987544333
No 460
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.55 E-value=1.2 Score=47.71 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAK 854 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAk 854 (1103)
+.+++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998644
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.53 E-value=0.56 Score=45.25 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.49 E-value=0.47 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||+|+|||||++.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998654
No 463
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.48 E-value=0.53 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
.-+.|.||+|+|||||.+.|+....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999997653
No 464
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.44 E-value=2.3 Score=47.71 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
....+.|.|+||+|||+++.+++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998765
No 465
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.32 E-value=0.55 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..|++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 466
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.22 E-value=0.5 Score=56.33 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAGA 862 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg~ 862 (1103)
..|.|.|.+|+||||+++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999975
No 467
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.19 E-value=0.5 Score=51.26 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||+|+|||||++.|+....
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999987654
No 468
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.18 E-value=0.54 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 469
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.14 E-value=1.2 Score=48.03 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999754
No 470
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=84.13 E-value=1.8 Score=56.20 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 868 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~ 868 (1103)
..+|+.||+|+|||..+...+... +...+.+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~ 234 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 234 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 479999999999999765443332 44444443
No 471
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.04 E-value=3 Score=45.87 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=36.8
Q ss_pred cccccccccccchhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 001309 302 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 372 (1103)
Q Consensus 302 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a 372 (1103)
..+|++|.- .++.+..+..+.... ..+.|||.||+|| .+.+||||+|+.++-
T Consensus 20 ~~~f~~i~G--~~~~~~~l~~~~~~~---------------~~~~vLl~G~~Gt--GKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVG--QEDMKLALLLTAVDP---------------GIGGVLVFGDRGT--GKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCS--CHHHHHHHHHHHHCG---------------GGCCEEEECCGGG--CTTHHHHHHHHHSCC
T ss_pred CCCchhccC--hHHHHHHHHHHhhCC---------------CCceEEEECCCCc--cHHHHHHHHHHhCcc
Confidence 357888544 366776665544321 1234999999999 699999999999864
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.99 E-value=0.9 Score=51.66 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 869 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~el---g~~fi~v~~ 869 (1103)
..++++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4579999999999999999997654 667777764
No 473
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.98 E-value=0.65 Score=52.50 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATEAGAN 863 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~elg~~ 863 (1103)
...+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3569999999999999999999987654
No 474
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.95 E-value=0.53 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 475
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.95 E-value=0.44 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
..+.|.|++|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999988763
No 476
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.94 E-value=0.62 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 477
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.92 E-value=0.59 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..|++.|++|+|||+|+.+++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.92 E-value=0.6 Score=50.75 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+..-+.|.||.|+|||||++.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999875
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.86 E-value=0.53 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||+|+|||||++.|+...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44568999999999999999998654
No 480
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.78 E-value=0.56 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+..-+.|.||+|+|||||++.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999874
No 481
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.71 E-value=0.4 Score=50.32 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.-+.|.||+|+|||||++.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 482
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.63 E-value=0.5 Score=56.90 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCcc
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSI 872 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg----~~fi~v~~s~L 872 (1103)
+...+.|.|++|+|||||+++|+..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 335689999999999999999999884 34545655443
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=83.57 E-value=0.68 Score=45.95 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
..++|.|++|+|||+|+.+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 484
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.57 E-value=0.66 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997543
No 485
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=83.55 E-value=0.5 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||.|+|||||.+.|+...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998765
No 486
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=83.45 E-value=0.96 Score=56.79 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.++|.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999877776554
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=83.44 E-value=0.56 Score=51.15 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||+|+|||||++.|+....
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445689999999999999999987653
No 488
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.44 E-value=0.49 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+..-+.|.||.|+|||||++.|+...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998654
No 489
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=83.41 E-value=0.51 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||+|+|||||.+.|+....
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334588999999999999999987653
No 490
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=83.30 E-value=0.61 Score=56.64 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
+.++|.|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999988876554
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=83.28 E-value=0.64 Score=52.05 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 865 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg~~fi 865 (1103)
...++||.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3478999999999999999999775 54443
No 492
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=83.21 E-value=0.53 Score=50.63 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||+|+|||||++.|+....
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999987653
No 493
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.21 E-value=0.63 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001309 836 CKGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 836 ~~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 494
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=83.19 E-value=0.58 Score=50.91 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||+|+|||||++.|+....
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 334688999999999999999987653
No 495
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=83.17 E-value=1.9 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
.-++|.||.|+|||++.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46899999999999999999753
No 496
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=83.10 E-value=0.56 Score=54.90 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVAT 858 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~ 858 (1103)
+-.++.|+||||||+++..++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4579999999999999988764
No 497
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.05 E-value=0.65 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001309 838 GILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 838 gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 498
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=83.05 E-value=3.1 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001309 837 KGILLFGPPGTGKTMLAKAVATE 859 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~e 859 (1103)
+.+|+.+|+|+|||..+-..+.+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999876655443
No 499
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.05 E-value=0.7 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001309 837 KGILLFGPPGTGKTMLAKAVATEA 860 (1103)
Q Consensus 837 ~gVLL~GPpGTGKT~LAkAIA~el 860 (1103)
..|++.|++|+|||+|+.++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 500
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.00 E-value=0.54 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001309 835 PCKGILLFGPPGTGKTMLAKAVATEAG 861 (1103)
Q Consensus 835 p~~gVLL~GPpGTGKT~LAkAIA~elg 861 (1103)
+..-+.|.||.|+|||||.+.|+....
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334588999999999999999987653
Done!