Query 001310
Match_columns 1103
No_of_seqs 917 out of 4748
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 21:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 4.4E-72 9.6E-77 553.4 33.3 492 5-652 17-513 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.3E-61 2.9E-66 463.4 30.7 491 4-650 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 3E-59 6.5E-64 497.0 49.0 577 340-1010 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 2.8E-56 6.1E-61 474.4 46.0 589 292-966 18-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.2E-52 2.5E-57 429.1 62.8 576 337-1008 21-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 3.3E-51 7.2E-56 435.4 65.0 604 318-1071 38-708 (893)
7 KOG0318 WD40 repeat stress pro 100.0 1.4E-49 3.1E-54 406.5 58.7 541 327-965 52-602 (603)
8 KOG0306 WD40-repeat-containing 100.0 8.4E-49 1.8E-53 417.0 49.6 508 334-1013 65-669 (888)
9 KOG0306 WD40-repeat-containing 100.0 2.2E-48 4.8E-53 413.7 52.1 578 336-1071 23-663 (888)
10 KOG0271 Notchless-like WD40 re 100.0 9.8E-51 2.1E-55 398.4 28.1 333 324-714 105-479 (480)
11 KOG0291 WD40-repeat-containing 100.0 5.2E-46 1.1E-50 395.9 62.8 547 401-1073 19-613 (893)
12 KOG0271 Notchless-like WD40 re 100.0 1.8E-49 3.9E-54 389.4 29.2 367 392-914 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 1.5E-41 3.2E-46 358.3 40.3 618 337-1072 40-713 (1080)
14 KOG0273 Beta-transducin family 100.0 4.9E-41 1.1E-45 339.8 34.7 345 322-763 167-522 (524)
15 KOG1063 RNA polymerase II elon 100.0 3.4E-39 7.3E-44 341.5 47.0 606 340-1008 20-763 (764)
16 KOG1408 WD40 repeat protein [F 100.0 7.2E-40 1.6E-44 345.6 41.1 509 328-917 72-714 (1080)
17 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-41 3.6E-46 338.8 23.1 284 331-650 172-458 (459)
18 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-41 1.5E-45 334.5 22.3 285 394-714 173-458 (459)
19 KOG1539 WD repeat protein [Gen 100.0 1.1E-36 2.4E-41 329.1 55.7 583 336-1070 36-646 (910)
20 KOG0279 G protein beta subunit 100.0 3.6E-39 7.9E-44 305.0 31.2 298 326-652 7-313 (315)
21 KOG0276 Vesicle coat complex C 100.0 9.3E-38 2E-42 325.9 43.8 481 327-965 6-490 (794)
22 KOG0263 Transcription initiati 100.0 3.2E-39 6.9E-44 349.3 33.5 279 318-611 362-652 (707)
23 KOG0286 G-protein beta subunit 100.0 1.6E-38 3.4E-43 302.4 33.3 295 325-650 46-343 (343)
24 KOG1539 WD repeat protein [Gen 100.0 4.9E-36 1.1E-40 324.1 51.2 547 331-965 73-648 (910)
25 KOG0286 G-protein beta subunit 100.0 2.2E-37 4.8E-42 294.6 32.3 287 391-714 50-343 (343)
26 KOG0315 G-protein beta subunit 100.0 5.3E-37 1.2E-41 284.9 31.0 293 346-673 9-309 (311)
27 KOG0292 Vesicle coat complex C 100.0 6.5E-35 1.4E-39 316.0 47.8 582 330-1009 5-595 (1202)
28 KOG0276 Vesicle coat complex C 100.0 4.4E-35 9.4E-40 306.0 43.6 465 392-1007 9-489 (794)
29 KOG1063 RNA polymerase II elon 100.0 5.5E-35 1.2E-39 309.7 42.4 600 402-1072 20-763 (764)
30 KOG0279 G protein beta subunit 100.0 1.6E-35 3.4E-40 280.4 32.8 296 731-1072 12-313 (315)
31 KOG0295 WD40 repeat-containing 100.0 1.5E-36 3.2E-41 297.7 25.7 292 325-651 99-405 (406)
32 KOG2106 Uncharacterized conser 100.0 3.6E-32 7.8E-37 277.4 51.3 538 324-1007 56-625 (626)
33 KOG0285 Pleiotropic regulator 100.0 2.4E-35 5.1E-40 287.8 26.2 298 320-653 137-440 (460)
34 KOG0296 Angio-associated migra 100.0 1.1E-34 2.4E-39 285.0 30.9 336 324-716 54-398 (399)
35 KOG0296 Angio-associated migra 100.0 4.5E-34 9.7E-39 280.7 35.2 339 436-916 59-398 (399)
36 KOG0315 G-protein beta subunit 100.0 8.7E-34 1.9E-38 263.6 32.1 295 500-895 11-309 (311)
37 KOG2106 Uncharacterized conser 100.0 1.3E-31 2.9E-36 273.3 48.4 524 401-1071 70-625 (626)
38 KOG0645 WD40 repeat protein [G 100.0 2.3E-33 5E-38 264.5 32.4 292 326-652 6-311 (312)
39 KOG0273 Beta-transducin family 100.0 1.7E-33 3.7E-38 285.3 30.2 280 334-652 235-523 (524)
40 KOG0292 Vesicle coat complex C 100.0 9.6E-32 2.1E-36 291.6 45.6 498 392-1007 5-517 (1202)
41 KOG0265 U5 snRNP-specific prot 100.0 1.5E-33 3.2E-38 269.9 27.7 291 328-650 41-336 (338)
42 KOG0316 Conserved WD40 repeat- 100.0 1E-33 2.2E-38 260.8 24.9 292 321-650 4-297 (307)
43 KOG2048 WD40 repeat protein [G 100.0 6.8E-30 1.5E-34 271.2 54.2 502 396-1011 25-551 (691)
44 KOG0265 U5 snRNP-specific prot 100.0 7.6E-33 1.6E-37 265.0 27.8 287 391-712 42-334 (338)
45 KOG0295 WD40 repeat-containing 100.0 2E-33 4.3E-38 275.8 24.2 285 392-714 104-404 (406)
46 KOG0266 WD40 repeat-containing 100.0 1.4E-32 3E-37 311.7 33.2 294 327-652 151-454 (456)
47 KOG0284 Polyadenylation factor 100.0 4.7E-34 1E-38 284.1 17.5 284 333-652 95-380 (464)
48 KOG0293 WD40 repeat-containing 100.0 2.8E-33 6E-38 278.4 22.8 293 391-716 219-513 (519)
49 KOG0285 Pleiotropic regulator 100.0 1.8E-32 3.9E-37 267.7 26.5 295 391-765 146-440 (460)
50 KOG2048 WD40 repeat protein [G 100.0 1.2E-28 2.5E-33 261.9 55.0 551 330-965 21-601 (691)
51 KOG0263 Transcription initiati 100.0 5.9E-33 1.3E-37 300.9 22.8 264 733-1010 377-651 (707)
52 KOG0282 mRNA splicing factor [ 100.0 1.7E-33 3.7E-38 286.8 17.3 295 322-650 202-503 (503)
53 KOG0284 Polyadenylation factor 100.0 1.5E-32 3.2E-37 273.4 20.0 287 733-1077 95-385 (464)
54 KOG0281 Beta-TrCP (transducin 100.0 5.6E-33 1.2E-37 269.7 15.4 274 333-656 196-481 (499)
55 KOG0645 WD40 repeat protein [G 100.0 1.8E-30 3.9E-35 245.1 31.4 293 731-1072 11-311 (312)
56 cd00200 WD40 WD40 domain, foun 100.0 1.8E-30 3.8E-35 283.2 36.0 287 328-650 3-289 (289)
57 KOG0266 WD40 repeat-containing 100.0 2.4E-30 5.2E-35 293.4 32.4 291 394-716 157-454 (456)
58 KOG1445 Tumor-specific antigen 100.0 8.5E-30 1.8E-34 266.2 33.5 628 325-1010 70-846 (1012)
59 KOG0282 mRNA splicing factor [ 100.0 2.1E-31 4.6E-36 271.6 17.4 290 391-714 209-503 (503)
60 KOG0281 Beta-TrCP (transducin 100.0 1.2E-31 2.7E-36 260.4 14.0 278 395-724 196-485 (499)
61 KOG0278 Serine/threonine kinas 100.0 1E-30 2.2E-35 243.1 18.8 290 328-657 8-302 (334)
62 KOG0316 Conserved WD40 repeat- 100.0 6.5E-30 1.4E-34 235.7 23.4 268 391-676 12-282 (307)
63 PLN00181 protein SPA1-RELATED; 100.0 8.3E-29 1.8E-33 304.0 39.4 294 330-651 479-792 (793)
64 cd00200 WD40 WD40 domain, foun 100.0 2E-28 4.4E-33 266.9 35.7 285 392-714 5-289 (289)
65 KOG0310 Conserved WD40 repeat- 100.0 5.8E-29 1.3E-33 254.5 26.5 287 329-652 22-309 (487)
66 KOG0288 WD40 repeat protein Ti 100.0 5.6E-30 1.2E-34 255.7 18.4 298 319-649 160-458 (459)
67 KOG0640 mRNA cleavage stimulat 100.0 1.8E-28 3.9E-33 235.1 27.8 316 324-652 102-426 (430)
68 PLN00181 protein SPA1-RELATED; 100.0 1.1E-27 2.4E-32 294.1 41.3 323 356-763 457-792 (793)
69 KOG0275 Conserved WD40 repeat- 100.0 2.3E-29 5.1E-34 242.2 18.6 289 394-714 211-507 (508)
70 KOG0643 Translation initiation 100.0 2.4E-28 5.1E-33 230.1 23.3 287 329-653 5-318 (327)
71 KOG0973 Histone transcription 100.0 5.1E-28 1.1E-32 272.2 29.0 307 332-654 11-357 (942)
72 KOG1445 Tumor-specific antigen 100.0 1.1E-26 2.4E-31 243.0 36.0 638 390-1078 73-850 (1012)
73 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-26 2.9E-31 225.3 33.9 287 330-652 10-303 (311)
74 KOG0313 Microtubule binding pr 100.0 8.3E-28 1.8E-32 237.8 25.6 282 332-652 103-418 (423)
75 KOG1407 WD40 repeat protein [F 100.0 2.3E-27 5E-32 222.8 27.0 279 328-643 14-293 (313)
76 KOG0283 WD40 repeat-containing 100.0 5E-28 1.1E-32 265.5 25.7 310 325-654 257-578 (712)
77 KOG0278 Serine/threonine kinas 100.0 8.5E-29 1.8E-33 230.3 16.3 287 392-720 10-301 (334)
78 KOG0643 Translation initiation 100.0 6.5E-27 1.4E-31 220.4 27.7 286 391-716 5-317 (327)
79 KOG0641 WD40 repeat protein [G 100.0 6.3E-26 1.4E-30 207.7 32.1 309 324-652 23-349 (350)
80 PTZ00421 coronin; Provisional 100.0 3.2E-26 7E-31 257.3 36.1 288 333-633 19-314 (493)
81 KOG0640 mRNA cleavage stimulat 100.0 2.8E-27 6.1E-32 227.0 21.8 306 622-1007 112-425 (430)
82 KOG0274 Cdc4 and related F-box 100.0 1E-26 2.2E-31 260.9 29.7 284 332-660 206-490 (537)
83 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-25 3.7E-30 217.7 32.9 271 392-675 10-286 (311)
84 KOG0277 Peroxisomal targeting 100.0 7.3E-27 1.6E-31 218.5 21.8 285 337-651 11-308 (311)
85 KOG0305 Anaphase promoting com 100.0 2.5E-26 5.4E-31 246.5 28.3 280 336-654 179-463 (484)
86 KOG0973 Histone transcription 100.0 1.7E-26 3.7E-31 259.9 28.3 305 733-1076 12-359 (942)
87 KOG0310 Conserved WD40 repeat- 100.0 2.3E-26 5.1E-31 235.6 26.6 282 733-1071 25-308 (487)
88 KOG0647 mRNA export protein (c 100.0 5.8E-26 1.3E-30 218.1 27.3 277 332-641 25-312 (347)
89 KOG1407 WD40 repeat protein [F 100.0 6.9E-26 1.5E-30 212.9 27.2 254 392-660 16-269 (313)
90 KOG0299 U3 snoRNP-associated p 100.0 2.5E-26 5.4E-31 233.3 26.1 293 327-641 135-444 (479)
91 KOG0772 Uncharacterized conser 100.0 1.1E-26 2.4E-31 238.2 23.6 309 320-653 153-488 (641)
92 KOG0294 WD40 repeat-containing 100.0 1.2E-25 2.7E-30 217.1 28.5 240 799-1073 40-282 (362)
93 PTZ00420 coronin; Provisional 99.9 6.4E-25 1.4E-29 247.1 37.2 237 392-634 70-318 (568)
94 KOG0313 Microtubule binding pr 99.9 6E-26 1.3E-30 224.7 24.8 281 394-716 103-418 (423)
95 KOG0283 WD40 repeat-containing 99.9 5.3E-26 1.1E-30 249.6 26.2 278 732-1011 265-579 (712)
96 KOG2096 WD40 repeat protein [G 99.9 1.1E-25 2.4E-30 217.2 24.8 311 657-1008 79-402 (420)
97 KOG0288 WD40 repeat protein Ti 99.9 1.7E-26 3.8E-31 230.9 17.7 285 392-714 171-459 (459)
98 KOG0301 Phospholipase A2-activ 99.9 2.6E-25 5.6E-30 236.9 27.4 284 325-654 5-290 (745)
99 PTZ00421 coronin; Provisional 99.9 1.1E-24 2.3E-29 245.1 34.0 270 395-674 19-313 (493)
100 KOG1963 WD40 repeat protein [G 99.9 3E-23 6.5E-28 228.6 44.0 526 392-1017 12-592 (792)
101 KOG0274 Cdc4 and related F-box 99.9 2E-25 4.4E-30 250.5 27.7 279 395-721 207-487 (537)
102 KOG0308 Conserved WD40 repeat- 99.9 1.3E-25 2.8E-30 237.2 23.7 295 332-653 19-328 (735)
103 KOG0647 mRNA export protein (c 99.9 5.7E-25 1.2E-29 211.3 25.3 276 392-680 23-309 (347)
104 KOG0268 Sof1-like rRNA process 99.9 1.7E-26 3.7E-31 226.8 15.1 294 324-657 56-350 (433)
105 KOG0305 Anaphase promoting com 99.9 4.4E-25 9.5E-30 236.9 26.9 252 326-610 209-463 (484)
106 KOG0300 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 215.1 21.1 297 324-654 138-478 (481)
107 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.3E-30 237.8 21.0 250 395-656 20-289 (735)
108 KOG0289 mRNA splicing factor [ 99.9 1.6E-24 3.4E-29 218.1 28.2 283 334-651 219-505 (506)
109 KOG0772 Uncharacterized conser 99.9 2.7E-25 5.8E-30 228.1 23.2 292 392-713 163-484 (641)
110 KOG0641 WD40 repeat protein [G 99.9 9.8E-24 2.1E-28 193.4 30.3 299 393-764 29-349 (350)
111 KOG0299 U3 snoRNP-associated p 99.9 9.6E-25 2.1E-29 221.9 26.1 250 392-654 138-412 (479)
112 KOG0289 mRNA splicing factor [ 99.9 1.5E-24 3.3E-29 218.2 25.6 281 397-714 220-504 (506)
113 KOG0268 Sof1-like rRNA process 99.9 7.1E-26 1.5E-30 222.5 15.4 285 436-766 61-347 (433)
114 KOG0294 WD40 repeat-containing 99.9 9.2E-24 2E-28 204.3 27.6 244 391-654 38-283 (362)
115 KOG1036 Mitotic spindle checkp 99.9 1.9E-23 4.1E-28 202.1 27.1 270 334-642 13-294 (323)
116 KOG0277 Peroxisomal targeting 99.9 1.3E-24 2.9E-29 203.4 18.2 244 334-607 60-308 (311)
117 KOG1274 WD40 repeat protein [G 99.9 7.6E-21 1.6E-25 209.8 50.3 279 331-649 10-297 (933)
118 KOG0300 WD40 repeat-containing 99.9 6.6E-24 1.4E-28 204.4 23.1 330 612-1009 140-477 (481)
119 KOG1332 Vesicle coat complex C 99.9 1.6E-24 3.4E-29 201.8 17.3 252 391-652 6-286 (299)
120 PTZ00420 coronin; Provisional 99.9 1.1E-22 2.3E-27 229.2 35.7 251 414-675 50-317 (568)
121 KOG2096 WD40 repeat protein [G 99.9 6.6E-23 1.4E-27 198.1 27.8 319 467-872 63-400 (420)
122 KOG0301 Phospholipase A2-activ 99.9 3E-23 6.5E-28 221.3 26.2 275 731-1072 11-288 (745)
123 KOG1963 WD40 repeat protein [G 99.9 4.7E-21 1E-25 211.5 43.6 514 439-1078 14-589 (792)
124 KOG0264 Nucleosome remodeling 99.9 1.4E-23 3E-28 214.1 20.7 265 331-609 121-405 (422)
125 KOG1274 WD40 repeat protein [G 99.9 5.3E-20 1.2E-24 203.2 48.3 278 394-688 11-294 (933)
126 KOG0639 Transducin-like enhanc 99.9 4.1E-23 8.9E-28 211.0 21.2 282 733-1071 418-703 (705)
127 KOG2055 WD40 repeat protein [G 99.9 2.3E-22 5E-27 204.4 26.1 289 578-1008 213-512 (514)
128 KOG0639 Transducin-like enhanc 99.9 4.1E-23 8.8E-28 211.1 20.7 287 332-651 417-703 (705)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.9E-21 2.1E-25 207.7 40.9 279 591-1017 2-288 (300)
130 KOG1332 Vesicle coat complex C 99.9 4.4E-23 9.5E-28 192.2 18.5 255 329-608 6-286 (299)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-21 1E-25 210.3 37.3 289 349-673 3-299 (300)
132 KOG4283 Transcription-coupled 99.9 6.3E-22 1.4E-26 189.2 25.5 320 331-716 40-365 (397)
133 KOG1273 WD40 repeat protein [G 99.9 5E-22 1.1E-26 191.9 24.2 300 321-654 12-324 (405)
134 KOG0646 WD40 repeat protein [G 99.9 3.9E-22 8.5E-27 203.5 24.3 293 349-676 9-331 (476)
135 KOG2055 WD40 repeat protein [G 99.9 6.6E-22 1.4E-26 201.2 25.1 288 334-652 213-512 (514)
136 KOG1036 Mitotic spindle checkp 99.9 2E-21 4.4E-26 188.2 26.3 271 394-682 11-292 (323)
137 KOG1538 Uncharacterized conser 99.9 1E-20 2.2E-25 199.9 32.8 456 443-961 14-520 (1081)
138 KOG0646 WD40 repeat protein [G 99.9 1E-21 2.2E-26 200.5 24.4 255 347-633 51-330 (476)
139 KOG1273 WD40 repeat protein [G 99.9 9.5E-22 2.1E-26 190.0 22.6 266 399-677 26-306 (405)
140 KOG0264 Nucleosome remodeling 99.9 4.5E-22 9.9E-27 203.1 21.2 259 801-1072 123-404 (422)
141 KOG4328 WD40 protein [Function 99.9 2.6E-21 5.6E-26 196.8 24.8 306 325-653 177-496 (498)
142 KOG0650 WD40 repeat nucleolar 99.9 1.7E-21 3.7E-26 204.0 23.5 322 318-713 384-732 (733)
143 KOG0650 WD40 repeat nucleolar 99.9 1.6E-21 3.6E-26 204.1 21.2 324 389-761 393-732 (733)
144 KOG1538 Uncharacterized conser 99.9 4.3E-20 9.3E-25 195.2 31.8 273 336-653 14-294 (1081)
145 KOG0267 Microtubule severing p 99.9 8.2E-23 1.8E-27 218.7 10.6 237 392-644 24-260 (825)
146 KOG4283 Transcription-coupled 99.9 1.1E-20 2.4E-25 180.8 23.5 281 696-1007 54-364 (397)
147 KOG0269 WD40 repeat-containing 99.9 4.4E-21 9.5E-26 207.4 20.3 242 739-1010 92-342 (839)
148 KOG1034 Transcriptional repres 99.9 1.2E-19 2.7E-24 176.8 23.2 295 328-652 32-383 (385)
149 KOG2445 Nuclear pore complex c 99.9 3.9E-19 8.5E-24 171.8 26.0 256 392-653 9-319 (361)
150 KOG0321 WD40 repeat-containing 99.9 6.2E-20 1.3E-24 194.2 22.4 289 344-654 61-393 (720)
151 KOG0267 Microtubule severing p 99.9 1.7E-21 3.6E-26 208.8 10.7 238 328-599 22-259 (825)
152 KOG1009 Chromatin assembly com 99.9 1.6E-19 3.5E-24 181.3 24.2 308 329-655 9-375 (434)
153 KOG0269 WD40 repeat-containing 99.8 3.4E-20 7.3E-25 200.6 18.4 286 397-714 40-338 (839)
154 KOG0321 WD40 repeat-containing 99.8 1.6E-19 3.4E-24 191.1 22.8 287 746-1072 64-391 (720)
155 KOG2445 Nuclear pore complex c 99.8 5.7E-19 1.2E-23 170.7 24.6 268 331-619 10-332 (361)
156 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-19 5.6E-24 183.3 22.9 294 593-990 5-305 (673)
157 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.2E-21 184.4 49.4 373 436-917 60-443 (466)
158 COG2319 FOG: WD40 repeat [Gene 99.8 6.5E-17 1.4E-21 188.5 44.9 369 329-765 60-443 (466)
159 KOG0270 WD40 repeat-containing 99.8 1.4E-19 3E-24 183.8 18.9 244 407-658 191-455 (463)
160 KOG0302 Ribosome Assembly prot 99.8 4.4E-19 9.5E-24 176.1 20.7 258 800-1071 149-437 (440)
161 KOG4328 WD40 protein [Function 99.8 8.5E-19 1.9E-23 178.6 23.1 310 653-1009 175-496 (498)
162 KOG0307 Vesicle coat complex C 99.8 4.9E-20 1.1E-24 209.1 15.3 253 396-655 64-330 (1049)
163 KOG4378 Nuclear protein COP1 [ 99.8 9.9E-19 2.1E-23 179.1 22.5 289 357-676 12-305 (673)
164 KOG0302 Ribosome Assembly prot 99.8 1.7E-18 3.7E-23 171.9 20.9 259 331-601 148-432 (440)
165 KOG2919 Guanine nucleotide-bin 99.8 4.6E-18 1E-22 165.4 23.3 287 338-643 53-361 (406)
166 KOG1912 WD40 repeat protein [G 99.8 8.2E-17 1.8E-21 174.0 34.1 603 334-1010 15-743 (1062)
167 KOG4497 Uncharacterized conser 99.8 7.7E-18 1.7E-22 164.0 22.6 407 401-909 13-425 (447)
168 KOG1009 Chromatin assembly com 99.8 1.7E-17 3.6E-22 167.0 25.5 298 734-1071 13-371 (434)
169 KOG2919 Guanine nucleotide-bin 99.8 1.7E-17 3.7E-22 161.4 24.4 227 744-999 121-361 (406)
170 KOG1912 WD40 repeat protein [G 99.8 1.9E-16 4.2E-21 171.2 34.8 494 396-945 15-572 (1062)
171 KOG1034 Transcriptional repres 99.8 1.8E-17 3.9E-22 161.9 24.3 301 391-763 33-382 (385)
172 KOG0644 Uncharacterized conser 99.8 3E-19 6.5E-24 194.1 11.2 285 327-657 183-473 (1113)
173 KOG0270 WD40 repeat-containing 99.8 7.2E-18 1.6E-22 171.5 19.3 254 346-613 192-454 (463)
174 KOG0303 Actin-binding protein 99.8 4.4E-17 9.5E-22 162.9 23.4 237 391-633 76-320 (472)
175 KOG0303 Actin-binding protein 99.8 1.4E-17 3E-22 166.5 19.3 237 330-589 77-320 (472)
176 KOG1524 WD40 repeat-containing 99.8 1.6E-16 3.4E-21 164.8 27.2 229 394-642 12-246 (737)
177 KOG4497 Uncharacterized conser 99.8 1.4E-16 3.1E-21 155.3 23.4 337 535-1000 14-424 (447)
178 KOG4227 WD40 repeat protein [G 99.8 3.7E-17 8.1E-22 162.5 19.7 303 326-652 48-387 (609)
179 KOG0307 Vesicle coat complex C 99.8 3.9E-18 8.4E-23 193.9 14.2 250 336-611 66-330 (1049)
180 KOG0649 WD40 repeat protein [G 99.8 1E-15 2.3E-20 143.1 27.3 286 736-1070 12-314 (325)
181 KOG0642 Cell-cycle nuclear pro 99.8 8.7E-18 1.9E-22 176.2 14.9 262 391-663 289-572 (577)
182 KOG0322 G-protein beta subunit 99.8 3.8E-17 8.1E-22 154.7 17.5 307 569-915 8-322 (323)
183 KOG1334 WD40 repeat protein [G 99.8 7.6E-18 1.7E-22 173.0 13.5 302 325-654 133-468 (559)
184 KOG0322 G-protein beta subunit 99.7 5.2E-17 1.1E-21 153.8 15.6 293 323-651 3-322 (323)
185 KOG0649 WD40 repeat protein [G 99.7 2.3E-15 5E-20 140.8 26.2 278 336-649 12-313 (325)
186 KOG0642 Cell-cycle nuclear pro 99.7 3.4E-17 7.4E-22 171.8 15.7 271 326-619 286-572 (577)
187 KOG1524 WD40 repeat-containing 99.7 2.5E-15 5.3E-20 156.0 28.8 272 332-649 12-283 (737)
188 KOG4227 WD40 repeat protein [G 99.7 2.6E-16 5.7E-21 156.5 20.8 295 392-716 52-387 (609)
189 KOG1188 WD40 repeat protein [G 99.7 9.3E-17 2E-21 158.0 17.1 292 457-764 42-346 (376)
190 KOG0290 Conserved WD40 repeat- 99.7 1E-15 2.2E-20 147.1 23.3 290 327-649 38-362 (364)
191 PRK11028 6-phosphogluconolacto 99.7 8.8E-15 1.9E-19 161.5 34.6 198 806-1008 83-304 (330)
192 KOG2110 Uncharacterized conser 99.7 4.8E-15 1E-19 147.9 28.4 241 802-1075 5-251 (391)
193 KOG0644 Uncharacterized conser 99.7 1.8E-17 4E-22 180.4 12.2 288 567-919 182-471 (1113)
194 KOG2110 Uncharacterized conser 99.7 2E-14 4.3E-19 143.6 32.2 242 396-654 5-250 (391)
195 KOG1007 WD repeat protein TSSC 99.7 5.7E-16 1.2E-20 148.6 20.4 261 328-608 57-361 (370)
196 KOG1310 WD40 repeat protein [G 99.7 4.5E-16 9.7E-21 161.9 21.2 246 435-725 44-312 (758)
197 KOG1007 WD repeat protein TSSC 99.7 1.5E-15 3.2E-20 145.8 22.0 181 806-1008 174-361 (370)
198 KOG1188 WD40 repeat protein [G 99.7 4.6E-16 9.9E-21 153.2 18.9 275 349-652 42-346 (376)
199 PRK11028 6-phosphogluconolacto 99.7 3.2E-14 7E-19 157.0 33.9 275 348-652 3-304 (330)
200 KOG0771 Prolactin regulatory e 99.7 2.9E-16 6.3E-21 159.7 15.5 198 806-1009 148-355 (398)
201 KOG1517 Guanine nucleotide bin 99.7 1.2E-14 2.6E-19 163.0 26.0 194 814-1011 1178-1384(1387)
202 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-13 2.5E-18 151.0 31.8 322 501-923 8-354 (369)
203 KOG1517 Guanine nucleotide bin 99.7 1.7E-14 3.6E-19 161.8 25.2 298 331-654 1061-1383(1387)
204 PRK01742 tolB translocation pr 99.7 1E-14 2.2E-19 165.8 23.9 235 356-633 183-426 (429)
205 KOG1240 Protein kinase contain 99.7 3.9E-14 8.4E-19 161.7 27.4 257 392-656 1044-1338(1431)
206 KOG1587 Cytoplasmic dynein int 99.6 2.5E-14 5.4E-19 159.7 25.5 250 395-654 241-518 (555)
207 COG4946 Uncharacterized protei 99.6 4.6E-11 1E-15 123.0 45.7 240 733-1009 358-655 (668)
208 PF02239 Cytochrom_D1: Cytochr 99.6 2.3E-12 4.9E-17 140.9 38.1 335 455-883 6-356 (369)
209 KOG0290 Conserved WD40 repeat- 99.6 3.2E-14 6.9E-19 136.9 20.2 251 331-604 93-361 (364)
210 KOG1334 WD40 repeat protein [G 99.6 3E-15 6.6E-20 154.1 14.1 296 392-716 138-466 (559)
211 KOG0771 Prolactin regulatory e 99.6 5.9E-15 1.3E-19 150.3 15.6 197 847-1073 148-355 (398)
212 KOG1832 HIV-1 Vpr-binding prot 99.6 7.8E-16 1.7E-20 168.4 9.3 343 171-642 1014-1379(1516)
213 KOG0974 WD-repeat protein WDR6 99.6 1.2E-11 2.6E-16 140.3 42.1 196 335-565 88-290 (967)
214 KOG2139 WD40 repeat protein [G 99.6 5.4E-13 1.2E-17 132.6 26.5 288 336-652 100-431 (445)
215 KOG1587 Cytoplasmic dynein int 99.6 1.2E-13 2.5E-18 154.4 24.5 259 328-609 237-517 (555)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 2.8E-13 6.2E-18 141.4 24.7 169 811-988 182-384 (636)
217 KOG0974 WD-repeat protein WDR6 99.6 2.9E-11 6.4E-16 137.2 42.7 199 443-654 89-290 (967)
218 KOG1523 Actin-related protein 99.6 2.5E-13 5.3E-18 133.1 22.6 235 395-643 9-269 (361)
219 PRK01742 tolB translocation pr 99.6 6.9E-14 1.5E-18 159.0 22.2 230 321-589 190-426 (429)
220 KOG1310 WD40 repeat protein [G 99.6 2.3E-14 5.1E-19 149.3 15.9 245 326-616 42-311 (758)
221 KOG2139 WD40 repeat protein [G 99.6 1E-12 2.3E-17 130.6 26.2 300 624-1008 100-431 (445)
222 KOG2041 WD40 repeat protein [G 99.6 6.4E-12 1.4E-16 135.3 33.6 518 395-1006 13-617 (1189)
223 KOG1240 Protein kinase contain 99.6 2.4E-13 5.2E-18 155.4 24.0 365 654-1070 1038-1431(1431)
224 KOG2111 Uncharacterized conser 99.6 6.9E-12 1.5E-16 123.2 30.6 241 398-654 7-258 (346)
225 PF04762 IKI3: IKI3 family; I 99.6 7E-09 1.5E-13 126.1 62.4 439 394-967 73-566 (928)
226 KOG1523 Actin-related protein 99.6 3E-13 6.4E-18 132.5 20.0 238 333-599 9-269 (361)
227 PRK03629 tolB translocation pr 99.5 2.2E-12 4.7E-17 146.2 29.0 238 357-632 179-427 (429)
228 KOG2321 WD40 repeat protein [G 99.5 1.1E-12 2.3E-17 138.2 23.9 284 332-654 49-345 (703)
229 KOG2111 Uncharacterized conser 99.5 2.8E-12 6.2E-17 125.8 25.0 240 804-1075 7-259 (346)
230 PRK05137 tolB translocation pr 99.5 3.1E-12 6.7E-17 146.2 29.2 237 357-632 182-432 (435)
231 KOG1272 WD40-repeat-containing 99.5 4.1E-14 8.9E-19 145.0 11.5 269 395-686 128-401 (545)
232 PRK03629 tolB translocation pr 99.5 1.5E-12 3.2E-17 147.5 25.0 233 320-588 184-427 (429)
233 COG4946 Uncharacterized protei 99.5 2.7E-09 5.8E-14 110.3 45.3 397 326-863 70-507 (668)
234 KOG2041 WD40 repeat protein [G 99.5 1.4E-10 3E-15 125.2 37.6 539 336-968 16-622 (1189)
235 KOG1272 WD40-repeat-containing 99.5 7.4E-14 1.6E-18 143.1 11.3 274 334-648 129-405 (545)
236 PRK04922 tolB translocation pr 99.5 2.4E-12 5.2E-17 146.8 24.3 233 320-588 189-432 (433)
237 PRK04922 tolB translocation pr 99.5 3.4E-12 7.3E-17 145.6 25.4 238 357-632 184-432 (433)
238 PF04762 IKI3: IKI3 family; I 99.5 2.5E-08 5.4E-13 121.4 59.8 570 333-1013 74-689 (928)
239 PRK02889 tolB translocation pr 99.5 3.1E-12 6.7E-17 145.2 24.8 233 321-588 182-424 (427)
240 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-12 4.2E-17 135.3 20.7 277 336-657 125-457 (636)
241 COG5354 Uncharacterized protei 99.5 1.6E-11 3.4E-16 128.2 27.1 283 333-654 31-350 (561)
242 PRK02889 tolB translocation pr 99.5 5.4E-12 1.2E-16 143.3 25.9 223 392-632 191-424 (427)
243 KOG2315 Predicted translation 99.5 4.2E-11 9.2E-16 126.8 30.0 287 335-660 35-352 (566)
244 PF10282 Lactonase: Lactonase, 99.5 3.9E-10 8.5E-15 124.2 39.4 210 804-1015 88-331 (345)
245 KOG3881 Uncharacterized conser 99.5 7.3E-12 1.6E-16 126.4 22.0 273 334-633 55-342 (412)
246 COG5354 Uncharacterized protei 99.5 2E-10 4.3E-15 120.1 32.6 366 512-1000 15-421 (561)
247 KOG2314 Translation initiation 99.5 1.1E-10 2.5E-15 122.7 30.5 327 531-1009 212-574 (698)
248 KOG2315 Predicted translation 99.5 1.1E-10 2.5E-15 123.6 30.1 336 529-917 34-391 (566)
249 PRK05137 tolB translocation pr 99.4 1.3E-11 2.7E-16 141.2 25.0 233 320-588 187-432 (435)
250 PF10282 Lactonase: Lactonase, 99.4 1.6E-09 3.5E-14 119.3 40.3 298 554-986 12-345 (345)
251 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.3E-09 2.8E-14 115.8 37.1 247 742-1017 53-339 (352)
252 KOG2321 WD40 repeat protein [G 99.4 6.6E-11 1.4E-15 125.0 23.9 285 439-765 49-344 (703)
253 PF08662 eIF2A: Eukaryotic tra 99.4 4.4E-11 9.5E-16 118.5 21.6 155 847-1017 9-187 (194)
254 KOG2314 Translation initiation 99.4 1.8E-10 3.8E-15 121.3 26.7 325 398-866 212-559 (698)
255 KOG1409 Uncharacterized conser 99.4 5E-11 1.1E-15 118.2 21.0 338 567-1009 16-395 (404)
256 COG2706 3-carboxymuconate cycl 99.4 1.3E-09 2.8E-14 110.3 31.1 281 707-1013 15-328 (346)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.4E-14 116.4 31.9 270 357-660 27-338 (352)
258 KOG3881 Uncharacterized conser 99.4 8.1E-11 1.8E-15 119.0 20.7 208 801-1017 104-329 (412)
259 PRK01029 tolB translocation pr 99.3 2.3E-10 4.9E-15 129.0 26.5 237 324-589 174-425 (428)
260 PRK00178 tolB translocation pr 99.3 1.9E-10 4.1E-15 131.9 26.0 230 324-588 188-427 (430)
261 PRK01029 tolB translocation pr 99.3 6.4E-10 1.4E-14 125.4 28.9 228 392-634 180-426 (428)
262 COG2706 3-carboxymuconate cycl 99.3 6.3E-09 1.4E-13 105.4 32.1 250 801-1077 38-326 (346)
263 PRK04792 tolB translocation pr 99.3 1.6E-10 3.4E-15 131.6 23.7 230 324-588 207-446 (448)
264 KOG1354 Serine/threonine prote 99.3 4.7E-10 1E-14 111.3 22.4 170 842-1013 163-364 (433)
265 KOG1354 Serine/threonine prote 99.3 7E-10 1.5E-14 110.1 23.6 357 441-963 25-432 (433)
266 PRK04792 tolB translocation pr 99.3 8.7E-10 1.9E-14 125.5 27.8 223 392-632 213-446 (448)
267 KOG1409 Uncharacterized conser 99.3 5.6E-11 1.2E-15 117.9 15.4 358 476-875 15-395 (404)
268 PRK00178 tolB translocation pr 99.3 1.1E-09 2.5E-14 125.6 29.0 223 392-632 194-427 (430)
269 PF08662 eIF2A: Eukaryotic tra 99.3 3.6E-10 7.8E-15 112.0 20.9 163 400-571 9-186 (194)
270 TIGR02800 propeller_TolB tol-p 99.3 8.4E-10 1.8E-14 126.8 26.9 210 392-617 185-405 (417)
271 TIGR02800 propeller_TolB tol-p 99.3 3.9E-10 8.6E-15 129.5 24.0 216 324-572 179-405 (417)
272 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.1E-14 115.6 23.2 188 812-1009 3-221 (541)
273 KOG4547 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 117.4 20.3 194 405-609 2-221 (541)
274 TIGR03300 assembly_YfgL outer 99.2 4.2E-08 9.2E-13 110.6 34.2 207 821-1069 153-376 (377)
275 TIGR03300 assembly_YfgL outer 99.2 3.8E-08 8.2E-13 111.0 33.0 181 457-654 67-261 (377)
276 KOG2659 LisH motif-containing 99.2 1.4E-10 3E-15 110.9 10.7 169 3-183 24-204 (228)
277 KOG0280 Uncharacterized conser 99.1 5.1E-09 1.1E-13 102.1 18.1 251 336-610 71-335 (339)
278 PLN02919 haloacid dehalogenase 99.0 2E-07 4.4E-12 116.1 33.4 260 738-1012 571-892 (1057)
279 PLN02919 haloacid dehalogenase 99.0 2.6E-07 5.6E-12 115.2 32.5 256 806-1074 571-890 (1057)
280 PRK04043 tolB translocation pr 99.0 7.9E-08 1.7E-12 107.6 25.0 208 324-565 178-402 (419)
281 KOG1897 Damage-specific DNA bi 99.0 0.0002 4.4E-09 82.5 54.6 581 332-965 304-942 (1096)
282 PF15492 Nbas_N: Neuroblastoma 99.0 2.1E-07 4.6E-12 91.7 23.7 208 808-1017 3-268 (282)
283 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.4E-14 112.2 10.9 243 392-650 731-986 (1034)
284 KOG0280 Uncharacterized conser 99.0 1.2E-07 2.5E-12 92.8 21.0 198 805-1011 124-336 (339)
285 KOG3617 WD40 and TPR repeat-co 98.9 4.8E-08 1E-12 108.1 18.4 506 337-970 18-590 (1416)
286 KOG1064 RAVE (regulator of V-A 98.9 4.6E-09 1E-13 125.3 11.2 200 394-619 2206-2409(2439)
287 KOG0309 Conserved WD40 repeat- 98.9 9.1E-09 2E-13 112.1 11.9 211 389-609 107-340 (1081)
288 PRK11138 outer membrane biogen 98.9 4E-06 8.6E-11 94.9 33.4 212 821-1071 168-393 (394)
289 KOG4190 Uncharacterized conser 98.9 1.4E-08 3E-13 106.8 12.1 295 325-648 726-1032(1034)
290 KOG1064 RAVE (regulator of V-A 98.9 1.2E-08 2.6E-13 122.0 12.5 226 408-661 2180-2407(2439)
291 PRK04043 tolB translocation pr 98.9 1.4E-06 3E-11 97.7 28.5 213 824-1077 170-403 (419)
292 PF07433 DUF1513: Protein of u 98.9 1.8E-06 3.9E-11 88.4 26.3 183 807-998 55-276 (305)
293 KOG1897 Damage-specific DNA bi 98.9 0.00062 1.3E-08 78.7 54.6 607 403-1070 264-1002(1096)
294 KOG3914 WD repeat protein WDR4 98.8 3.9E-08 8.4E-13 100.7 13.6 165 336-526 64-232 (390)
295 KOG3914 WD repeat protein WDR4 98.8 5.2E-08 1.1E-12 99.8 12.8 158 848-1017 67-232 (390)
296 PF07433 DUF1513: Protein of u 98.8 8.1E-06 1.8E-10 83.7 27.8 205 806-1017 8-256 (305)
297 KOG3617 WD40 and TPR repeat-co 98.8 2.7E-06 5.9E-11 94.7 25.5 342 399-821 18-374 (1416)
298 PF15492 Nbas_N: Neuroblastoma 98.7 8.1E-06 1.7E-10 80.8 25.6 250 338-619 1-270 (282)
299 PRK11138 outer membrane biogen 98.7 1.4E-05 2.9E-10 90.5 31.9 153 457-617 71-232 (394)
300 KOG4532 WD40-like repeat conta 98.7 2.7E-06 5.9E-11 82.2 21.4 191 816-1011 131-334 (344)
301 KOG0309 Conserved WD40 repeat- 98.7 9E-08 1.9E-12 104.6 12.6 295 396-717 24-340 (1081)
302 PF13360 PQQ_2: PQQ-like domai 98.7 4E-06 8.6E-11 87.9 24.9 223 822-1079 2-237 (238)
303 KOG4532 WD40-like repeat conta 98.7 1.8E-06 3.8E-11 83.5 19.3 148 399-548 161-321 (344)
304 PF13360 PQQ_2: PQQ-like domai 98.7 6.1E-06 1.3E-10 86.5 25.9 224 782-1014 7-236 (238)
305 COG5170 CDC55 Serine/threonine 98.7 3E-07 6.4E-12 90.3 14.3 76 800-875 170-253 (460)
306 PF08450 SGL: SMP-30/Gluconola 98.7 4E-05 8.6E-10 80.5 31.0 221 739-997 4-244 (246)
307 PF06433 Me-amine-dh_H: Methyl 98.7 2E-05 4.4E-10 81.7 27.3 208 804-1017 96-329 (342)
308 KOG4714 Nucleoporin [Nuclear s 98.7 3.7E-07 8.1E-12 87.7 13.4 209 337-564 39-255 (319)
309 PF08450 SGL: SMP-30/Gluconola 98.7 2.4E-05 5.2E-10 82.1 28.3 221 401-641 4-244 (246)
310 KOG1832 HIV-1 Vpr-binding prot 98.6 2.7E-08 5.7E-13 110.6 4.9 216 392-639 1097-1318(1516)
311 PF06433 Me-amine-dh_H: Methyl 98.6 6E-05 1.3E-09 78.3 27.5 285 555-884 17-330 (342)
312 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00057 1.2E-08 66.4 31.5 136 500-646 24-159 (354)
313 KOG0882 Cyclophilin-related pe 98.6 1.6E-06 3.5E-11 89.9 15.5 309 733-1069 8-369 (558)
314 PRK02888 nitrous-oxide reducta 98.6 1.1E-05 2.4E-10 90.5 23.0 183 809-1009 199-405 (635)
315 KOG0882 Cyclophilin-related pe 98.5 1.9E-06 4.1E-11 89.4 15.3 258 395-661 8-314 (558)
316 KOG2695 WD40 repeat protein [G 98.5 2.9E-07 6.2E-12 92.1 8.9 168 338-529 215-388 (425)
317 KOG1920 IkappaB kinase complex 98.5 6.8E-05 1.5E-09 88.2 29.2 251 579-929 69-335 (1265)
318 PRK02888 nitrous-oxide reducta 98.5 1.9E-05 4E-10 88.7 23.7 104 810-917 284-405 (635)
319 COG5170 CDC55 Serine/threonine 98.5 3.7E-06 8.1E-11 82.8 15.2 251 395-652 25-367 (460)
320 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00019 4E-09 79.7 30.7 303 538-904 1-345 (353)
321 KOG4714 Nucleoporin [Nuclear s 98.5 3.5E-06 7.5E-11 81.2 14.1 202 855-1070 100-316 (319)
322 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0013 2.7E-08 64.1 31.0 101 554-661 32-132 (354)
323 PF00400 WD40: WD domain, G-be 98.5 6.3E-07 1.4E-11 62.5 6.8 39 876-914 1-39 (39)
324 KOG1275 PAB-dependent poly(A) 98.4 4.1E-06 8.9E-11 94.6 16.1 180 813-1006 146-340 (1118)
325 KOG1645 RING-finger-containing 98.4 4.8E-05 1E-09 78.3 20.6 251 391-652 188-461 (463)
326 KOG1920 IkappaB kinase complex 98.4 0.00011 2.5E-09 86.4 26.2 238 734-1012 68-326 (1265)
327 PF00400 WD40: WD domain, G-be 98.4 7.3E-07 1.6E-11 62.1 5.4 38 325-363 2-39 (39)
328 KOG3621 WD40 repeat-containing 98.4 7.9E-05 1.7E-09 82.6 23.2 139 334-493 33-178 (726)
329 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00045 9.7E-09 76.6 30.1 291 343-674 1-337 (353)
330 PF10607 CLTH: CTLH/CRA C-term 98.3 1.3E-06 2.7E-11 82.7 8.0 133 38-183 5-141 (145)
331 KOG0396 Uncharacterized conser 98.3 3.9E-06 8.5E-11 85.4 9.8 118 5-124 115-241 (389)
332 KOG1645 RING-finger-containing 98.3 5.2E-05 1.1E-09 78.0 17.4 250 327-608 186-461 (463)
333 cd00216 PQQ_DH Dehydrogenases 98.2 0.0022 4.8E-08 74.4 32.7 155 849-1017 222-433 (488)
334 PF14583 Pectate_lyase22: Olig 98.2 0.0042 9E-08 66.3 31.2 279 340-650 41-379 (386)
335 KOG2066 Vacuolar assembly/sort 98.2 7.8E-05 1.7E-09 83.8 17.9 188 844-1072 40-233 (846)
336 KOG1275 PAB-dependent poly(A) 98.1 4.9E-05 1.1E-09 86.3 15.5 186 457-652 149-342 (1118)
337 KOG2695 WD40 repeat protein [G 98.1 7.8E-06 1.7E-10 82.1 7.7 142 326-484 245-387 (425)
338 cd00216 PQQ_DH Dehydrogenases 98.1 0.0046 1E-07 71.7 31.5 138 500-644 62-238 (488)
339 KOG2114 Vacuolar assembly/sort 98.1 0.00072 1.6E-08 76.9 23.0 202 341-572 30-252 (933)
340 KOG2066 Vacuolar assembly/sort 98.0 0.00041 8.9E-09 78.3 20.4 186 736-965 41-233 (846)
341 PF06977 SdiA-regulated: SdiA- 98.0 0.0024 5.3E-08 65.1 23.8 197 328-547 15-239 (248)
342 KOG2114 Vacuolar assembly/sort 98.0 0.00046 1E-08 78.4 20.0 203 808-1017 29-252 (933)
343 KOG3621 WD40 repeat-containing 98.0 0.00097 2.1E-08 74.3 21.9 199 625-917 36-245 (726)
344 PF14583 Pectate_lyase22: Olig 98.0 0.01 2.2E-07 63.5 27.9 229 402-643 41-303 (386)
345 smart00668 CTLH C-terminal to 98.0 5.1E-06 1.1E-10 63.9 2.6 53 37-90 4-56 (58)
346 PF02897 Peptidase_S9_N: Proly 97.9 0.018 3.9E-07 65.9 32.9 253 336-614 125-410 (414)
347 PF11768 DUF3312: Protein of u 97.9 0.00069 1.5E-08 74.5 18.9 115 802-919 205-332 (545)
348 COG0823 TolB Periplasmic compo 97.9 0.00078 1.7E-08 75.1 19.9 198 324-550 182-390 (425)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.055 1.2E-06 63.0 34.7 149 867-1017 272-499 (527)
350 PF11768 DUF3312: Protein of u 97.8 0.03 6.4E-07 62.2 29.9 94 557-654 238-331 (545)
351 PF08513 LisH: LisH; InterPro 97.8 2.9E-05 6.2E-10 47.7 3.8 27 6-32 1-27 (27)
352 PF08596 Lgl_C: Lethal giant l 97.8 0.0046 9.9E-08 68.3 23.8 255 336-597 3-325 (395)
353 PRK13616 lipoprotein LpqB; Pro 97.8 0.0049 1.1E-07 72.0 25.2 210 844-1091 350-587 (591)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.13 2.7E-06 60.1 36.7 61 823-885 441-501 (527)
355 COG3391 Uncharacterized conser 97.8 0.01 2.2E-07 66.4 26.4 208 803-1017 74-292 (381)
356 COG0823 TolB Periplasmic compo 97.8 0.0028 6.1E-08 70.7 21.4 175 824-1012 174-362 (425)
357 smart00667 LisH Lissencephaly 97.8 3.6E-05 7.7E-10 51.5 4.1 32 4-35 2-33 (34)
358 PF08596 Lgl_C: Lethal giant l 97.7 0.01 2.2E-07 65.7 24.8 241 398-650 3-333 (395)
359 PF06977 SdiA-regulated: SdiA- 97.7 0.015 3.2E-07 59.5 24.2 201 801-1005 20-247 (248)
360 PF04053 Coatomer_WDAD: Coatom 97.7 0.0056 1.2E-07 68.6 22.8 222 393-653 29-263 (443)
361 PF08553 VID27: VID27 cytoplas 97.7 0.0076 1.6E-07 71.2 24.7 212 855-1071 492-723 (794)
362 PF04841 Vps16_N: Vps16, N-ter 97.7 0.016 3.4E-07 65.2 26.4 199 808-1017 34-255 (410)
363 PF04053 Coatomer_WDAD: Coatom 97.7 0.0052 1.1E-07 68.8 22.2 219 737-1010 35-264 (443)
364 COG3490 Uncharacterized protei 97.7 0.012 2.5E-07 58.6 21.4 206 807-1017 72-319 (366)
365 COG3490 Uncharacterized protei 97.7 0.03 6.4E-07 55.9 24.2 256 580-914 69-346 (366)
366 PF04841 Vps16_N: Vps16, N-ter 97.7 0.042 9E-07 61.9 29.2 230 397-661 81-323 (410)
367 PF02897 Peptidase_S9_N: Proly 97.7 0.038 8.3E-07 63.2 29.6 250 397-656 124-408 (414)
368 PRK13616 lipoprotein LpqB; Pro 97.6 0.003 6.5E-08 73.7 19.4 184 803-1001 350-561 (591)
369 COG3391 Uncharacterized conser 97.6 0.17 3.6E-06 56.7 32.5 250 398-660 32-291 (381)
370 PF00780 CNH: CNH domain; Int 97.4 0.081 1.7E-06 56.6 26.3 235 744-1017 5-264 (275)
371 KOG1008 Uncharacterized conser 97.4 5.7E-05 1.2E-09 82.5 1.8 205 334-563 56-275 (783)
372 PF00780 CNH: CNH domain; Int 97.4 0.15 3.2E-06 54.6 28.0 231 406-662 5-265 (275)
373 PF03178 CPSF_A: CPSF A subuni 97.3 0.074 1.6E-06 58.3 25.2 174 823-1008 2-202 (321)
374 COG3386 Gluconolactonase [Carb 97.2 0.1 2.2E-06 55.5 23.5 214 448-673 31-263 (307)
375 COG3386 Gluconolactonase [Carb 97.2 0.089 1.9E-06 56.0 22.9 224 340-597 30-274 (307)
376 PF03178 CPSF_A: CPSF A subuni 97.2 0.12 2.5E-06 56.7 25.0 217 357-604 2-261 (321)
377 KOG1008 Uncharacterized conser 97.2 0.00011 2.5E-09 80.2 1.2 203 487-716 58-275 (783)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.25 5.5E-06 54.5 26.2 84 530-619 308-409 (415)
379 KOG2817 Predicted E3 ubiquitin 97.2 0.0023 5E-08 66.9 9.9 105 7-113 118-235 (394)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.1 2.2E-06 57.6 22.1 82 837-919 301-401 (415)
381 KOG4640 Anaphase-promoting com 97.1 0.0023 5.1E-08 70.5 9.2 94 335-451 21-115 (665)
382 PRK10115 protease 2; Provision 97.0 0.85 1.8E-05 55.3 31.8 245 397-654 127-396 (686)
383 KOG2395 Protein involved in va 97.0 0.028 6.1E-07 61.0 16.5 206 858-1071 348-572 (644)
384 KOG4640 Anaphase-promoting com 97.0 0.0035 7.5E-08 69.2 9.8 93 844-945 21-114 (665)
385 PF05096 Glu_cyclase_2: Glutam 97.0 0.46 9.9E-06 48.4 23.6 185 804-997 46-249 (264)
386 smart00320 WD40 WD40 repeats. 96.9 0.0027 6E-08 43.3 5.7 39 876-914 2-40 (40)
387 PF10647 Gmad1: Lipoprotein Lp 96.8 0.18 3.9E-06 52.6 21.0 147 803-954 24-183 (253)
388 PRK10115 protease 2; Provision 96.8 2.2 4.7E-05 51.8 33.4 244 336-611 128-397 (686)
389 PF10647 Gmad1: Lipoprotein Lp 96.8 0.45 9.7E-06 49.7 23.1 146 845-1000 25-187 (253)
390 smart00320 WD40 WD40 repeats. 96.7 0.0031 6.7E-08 43.0 4.8 38 325-363 3-40 (40)
391 TIGR03074 PQQ_membr_DH membran 96.7 2.4 5.2E-05 51.5 41.3 205 457-661 196-486 (764)
392 PF14870 PSII_BNR: Photosynthe 96.7 1.1 2.4E-05 47.5 26.8 157 841-1005 142-301 (302)
393 PF08553 VID27: VID27 cytoplas 96.6 0.061 1.3E-06 63.9 16.5 146 453-607 492-646 (794)
394 PF07995 GSDH: Glucose / Sorbo 96.5 1.7 3.7E-05 47.6 26.5 113 336-465 3-135 (331)
395 PHA02713 hypothetical protein; 96.4 0.27 5.8E-06 58.0 21.2 195 855-1084 303-543 (557)
396 PF14727 PHTB1_N: PTHB1 N-term 96.4 2.1 4.6E-05 47.6 31.9 276 745-1071 36-359 (418)
397 COG3204 Uncharacterized protei 96.4 0.95 2.1E-05 46.2 21.2 205 732-962 83-309 (316)
398 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.1 2.2E-06 44.9 12.4 102 337-468 2-109 (111)
399 PF05694 SBP56: 56kDa selenium 96.4 0.67 1.5E-05 50.4 21.2 237 745-997 86-392 (461)
400 PHA02713 hypothetical protein; 96.4 0.23 5E-06 58.6 20.0 201 452-663 303-544 (557)
401 KOG2395 Protein involved in va 96.3 0.099 2.1E-06 56.9 14.8 144 407-562 344-499 (644)
402 PF15390 DUF4613: Domain of un 96.3 0.21 4.5E-06 55.6 17.4 159 844-1010 20-188 (671)
403 PF14727 PHTB1_N: PTHB1 N-term 96.3 1.8 3.9E-05 48.1 25.0 285 590-917 37-361 (418)
404 KOG4441 Proteins containing BT 96.2 0.38 8.2E-06 56.6 20.7 235 407-655 284-549 (571)
405 PF05694 SBP56: 56kDa selenium 96.2 1.7 3.7E-05 47.4 23.1 266 498-820 86-391 (461)
406 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.29 6.2E-06 42.2 13.6 100 889-1003 2-109 (111)
407 PF07995 GSDH: Glucose / Sorbo 96.0 1.6 3.5E-05 47.7 23.0 104 804-908 3-135 (331)
408 TIGR03074 PQQ_membr_DH membran 95.9 2.6 5.7E-05 51.2 25.6 204 813-1017 194-486 (764)
409 KOG4499 Ca2+-binding protein R 95.8 2.2 4.8E-05 41.8 19.3 208 458-673 30-262 (310)
410 KOG2079 Vacuolar assembly/sort 95.7 0.028 6.1E-07 66.3 8.1 104 407-516 98-202 (1206)
411 KOG1916 Nuclear protein, conta 95.7 0.01 2.2E-07 68.2 4.4 195 865-1071 110-322 (1283)
412 PF12894 Apc4_WD40: Anaphase-p 95.7 0.029 6.2E-07 40.1 4.9 34 334-369 11-44 (47)
413 PF05096 Glu_cyclase_2: Glutam 95.6 3.2 7E-05 42.5 23.7 192 735-954 45-248 (264)
414 KOG1898 Splicing factor 3b, su 95.6 7.8 0.00017 46.8 32.4 105 808-916 939-1048(1205)
415 PF14870 PSII_BNR: Photosynthe 95.5 4.3 9.4E-05 43.1 32.6 153 801-962 143-301 (302)
416 PRK13684 Ycf48-like protein; P 95.4 4.7 0.0001 44.1 23.6 156 843-1007 172-330 (334)
417 PF12894 Apc4_WD40: Anaphase-p 95.4 0.068 1.5E-06 38.2 6.0 32 395-426 10-41 (47)
418 KOG4499 Ca2+-binding protein R 95.4 2.5 5.5E-05 41.4 18.2 138 441-589 108-264 (310)
419 KOG4441 Proteins containing BT 95.1 1.3 2.7E-05 52.3 19.3 215 780-1013 303-551 (571)
420 COG3204 Uncharacterized protei 95.1 4.8 0.0001 41.4 23.7 171 840-1011 82-266 (316)
421 PF15390 DUF4613: Domain of un 95.0 8.1 0.00018 43.7 28.4 58 940-997 342-403 (671)
422 KOG2444 WD40 repeat protein [G 95.0 0.07 1.5E-06 51.9 6.9 103 815-917 71-178 (238)
423 KOG2079 Vacuolar assembly/sort 94.9 0.085 1.8E-06 62.5 8.5 102 500-607 100-202 (1206)
424 PF14761 HPS3_N: Hermansky-Pud 94.8 1.5 3.3E-05 42.9 15.3 159 890-1071 21-213 (215)
425 PF12234 Rav1p_C: RAVE protein 94.3 1.1 2.4E-05 52.1 15.6 113 443-563 31-156 (631)
426 PHA03098 kelch-like protein; P 94.2 2.2 4.7E-05 50.7 18.7 188 812-1013 293-516 (534)
427 PHA03098 kelch-like protein; P 94.1 2.3 4.9E-05 50.6 18.7 153 498-655 342-514 (534)
428 PF12234 Rav1p_C: RAVE protein 94.1 1.5 3.2E-05 51.2 15.9 122 839-964 25-155 (631)
429 KOG2444 WD40 repeat protein [G 94.0 0.18 3.9E-06 49.1 7.2 106 407-518 69-178 (238)
430 KOG2280 Vacuolar assembly/sort 93.7 4.9 0.00011 46.6 18.6 180 824-1017 65-255 (829)
431 PHA02790 Kelch-like protein; P 93.6 3.3 7.2E-05 48.1 18.2 185 812-1012 270-474 (480)
432 cd08044 TAF5_NTD2 TAF5_NTD2 is 93.6 0.081 1.8E-06 48.6 3.9 79 72-150 29-113 (133)
433 PRK13684 Ycf48-like protein; P 93.5 14 0.00031 40.4 31.2 152 802-963 172-329 (334)
434 TIGR03118 PEPCTERM_chp_1 conse 93.4 11 0.00024 39.1 24.0 214 443-662 24-289 (336)
435 PF03022 MRJP: Major royal jel 93.4 11 0.00025 40.0 20.2 188 805-996 3-253 (287)
436 TIGR03118 PEPCTERM_chp_1 conse 93.4 11 0.00025 39.0 22.4 243 624-885 24-290 (336)
437 PF10168 Nup88: Nuclear pore c 93.3 12 0.00026 45.2 22.3 136 356-519 41-181 (717)
438 KOG2280 Vacuolar assembly/sort 93.3 6.7 0.00014 45.6 18.7 207 335-573 44-256 (829)
439 COG4257 Vgb Streptogramin lyas 93.2 11 0.00023 38.3 18.0 148 845-1010 63-220 (353)
440 PF10168 Nup88: Nuclear pore c 93.2 2 4.4E-05 51.6 15.7 94 978-1084 84-191 (717)
441 PF04494 TFIID_90kDa: WD40 ass 93.2 0.1 2.2E-06 48.6 3.9 57 72-128 40-96 (142)
442 COG3823 Glutamine cyclotransfe 92.9 5.4 0.00012 38.6 14.7 177 813-996 55-247 (262)
443 KOG3630 Nuclear pore complex, 92.9 1 2.2E-05 54.2 12.1 146 802-953 100-260 (1405)
444 COG1520 FOG: WD40-like repeat 92.9 10 0.00022 42.5 20.2 201 810-1018 65-278 (370)
445 PF03022 MRJP: Major royal jel 92.8 15 0.00034 39.0 20.2 167 466-640 35-253 (287)
446 TIGR02604 Piru_Ver_Nterm putat 92.6 4 8.7E-05 45.5 16.4 149 844-997 14-202 (367)
447 KOG2377 Uncharacterized conser 92.2 3.8 8.3E-05 44.3 14.2 159 845-1010 24-187 (657)
448 PLN00033 photosystem II stabil 92.1 9.6 0.00021 42.5 18.2 146 805-962 241-396 (398)
449 TIGR02604 Piru_Ver_Nterm putat 91.8 10 0.00022 42.3 18.5 103 887-997 14-142 (367)
450 PF10214 Rrn6: RNA polymerase 91.6 43 0.00094 41.5 28.2 174 801-1010 78-278 (765)
451 KOG1916 Nuclear protein, conta 91.1 0.33 7.2E-06 56.4 5.5 145 823-970 153-328 (1283)
452 PF11725 AvrE: Pathogenicity f 90.8 35 0.00075 44.1 22.2 150 332-518 360-517 (1774)
453 PF14761 HPS3_N: Hermansky-Pud 90.7 12 0.00026 36.9 14.9 146 857-1008 29-214 (215)
454 KOG2377 Uncharacterized conser 90.6 1.7 3.6E-05 46.9 9.6 123 333-475 65-187 (657)
455 PHA02790 Kelch-like protein; P 90.4 14 0.0003 43.0 18.4 148 498-654 318-472 (480)
456 PF08728 CRT10: CRT10; InterP 90.3 8.3 0.00018 45.6 15.9 173 814-1007 49-245 (717)
457 PF10313 DUF2415: Uncharacteri 90.2 0.81 1.8E-05 31.7 4.6 33 335-367 1-35 (43)
458 KOG1900 Nuclear pore complex, 89.9 5.8 0.00013 49.2 14.5 151 863-1017 96-282 (1311)
459 COG5276 Uncharacterized conser 89.8 26 0.00057 36.1 26.7 276 579-916 87-369 (370)
460 COG1520 FOG: WD40-like repeat 89.5 40 0.00087 37.7 23.1 202 407-619 68-279 (370)
461 COG3292 Predicted periplasmic 89.4 30 0.00065 39.2 18.1 272 336-648 166-443 (671)
462 COG3292 Predicted periplasmic 89.4 44 0.00094 38.0 24.9 64 440-510 163-227 (671)
463 PF10313 DUF2415: Uncharacteri 89.3 1.3 2.8E-05 30.7 5.0 32 397-428 1-35 (43)
464 PF07676 PD40: WD40-like Beta 89.3 1.1 2.5E-05 30.5 5.1 33 330-362 4-38 (39)
465 KOG4460 Nuclear pore complex, 89.2 7.9 0.00017 42.8 13.5 100 978-1085 103-211 (741)
466 PLN00033 photosystem II stabil 89.1 43 0.00092 37.5 28.7 149 846-1005 241-396 (398)
467 COG4590 ABC-type uncharacteriz 88.9 1.7 3.6E-05 46.8 8.1 157 801-967 219-388 (733)
468 KOG1900 Nuclear pore complex, 88.8 5.7 0.00012 49.3 13.4 172 318-518 63-273 (1311)
469 COG3823 Glutamine cyclotransfe 88.6 13 0.00028 36.1 12.8 150 498-657 55-209 (262)
470 TIGR03548 mutarot_permut cycli 88.4 42 0.00092 36.6 21.6 71 498-568 123-199 (323)
471 PF13449 Phytase-like: Esteras 88.4 38 0.00083 37.0 18.9 151 801-953 18-231 (326)
472 PRK14131 N-acetylneuraminic ac 88.4 48 0.001 37.2 20.5 40 602-643 314-353 (376)
473 KOG3630 Nuclear pore complex, 87.9 4.9 0.00011 48.7 11.9 147 443-595 102-260 (1405)
474 COG4257 Vgb Streptogramin lyas 87.6 35 0.00077 34.8 20.4 234 397-654 62-307 (353)
475 PF07569 Hira: TUP1-like enhan 87.6 3.1 6.7E-05 42.1 9.0 77 894-970 18-100 (219)
476 PF13449 Phytase-like: Esteras 87.3 49 0.0011 36.1 24.0 164 843-1008 19-249 (326)
477 PF05935 Arylsulfotrans: Aryls 87.0 66 0.0014 37.3 23.3 157 457-620 117-313 (477)
478 COG5167 VID27 Protein involved 86.4 27 0.00059 38.7 15.4 150 447-608 472-632 (776)
479 PF12657 TFIIIC_delta: Transcr 86.2 3.7 8E-05 39.9 8.5 31 397-427 86-122 (173)
480 PF07569 Hira: TUP1-like enhan 86.2 5 0.00011 40.6 9.7 74 942-1016 16-103 (219)
481 TIGR03606 non_repeat_PQQ dehyd 86.1 23 0.0005 40.1 15.5 112 885-999 28-166 (454)
482 KOG4659 Uncharacterized conser 86.0 1.1E+02 0.0023 38.7 33.5 24 733-756 660-683 (1899)
483 KOG1983 Tomosyn and related SN 85.9 11 0.00024 47.5 14.4 69 938-1012 200-268 (993)
484 PF02333 Phytase: Phytase; In 85.8 60 0.0013 35.7 23.7 188 457-654 70-292 (381)
485 PF02333 Phytase: Phytase; In 85.4 63 0.0014 35.5 20.8 191 744-966 66-291 (381)
486 PF07250 Glyoxal_oxid_N: Glyox 85.4 17 0.00037 37.2 12.9 148 512-662 49-207 (243)
487 PF05935 Arylsulfotrans: Aryls 84.7 77 0.0017 36.8 19.7 147 864-1020 126-313 (477)
488 PRK13614 lipoprotein LpqB; Pro 84.7 91 0.002 36.7 20.1 157 804-967 344-520 (573)
489 KOG2247 WD40 repeat-containing 84.4 0.16 3.5E-06 54.8 -2.0 143 739-912 39-184 (615)
490 TIGR03606 non_repeat_PQQ dehyd 84.3 81 0.0018 35.9 28.4 66 330-408 25-90 (454)
491 PRK13613 lipoprotein LpqB; Pro 84.1 1E+02 0.0022 36.8 20.9 189 804-1002 364-576 (599)
492 KOG1983 Tomosyn and related SN 84.1 24 0.00052 44.7 16.0 33 335-368 36-68 (993)
493 PF08728 CRT10: CRT10; InterP 83.6 4.4 9.5E-05 47.8 8.8 133 336-472 102-245 (717)
494 COG5167 VID27 Protein involved 83.5 29 0.00063 38.5 14.0 142 812-965 477-632 (776)
495 PF12657 TFIIIC_delta: Transcr 83.0 7.2 0.00016 37.9 9.0 31 887-917 86-122 (173)
496 PRK13615 lipoprotein LpqB; Pro 82.8 1.1E+02 0.0023 36.0 22.7 151 846-1008 336-502 (557)
497 PF14781 BBS2_N: Ciliary BBSom 81.9 40 0.00087 30.5 13.1 120 889-1017 1-134 (136)
498 smart00036 CNH Domain found in 81.7 81 0.0018 34.0 29.1 238 344-618 11-280 (302)
499 PF11725 AvrE: Pathogenicity f 81.1 1.9E+02 0.0042 37.9 26.7 131 820-963 620-770 (1774)
500 COG5290 IkappaB kinase complex 81.0 98 0.0021 36.7 17.5 478 524-1071 11-535 (1243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-72 Score=553.36 Aligned_cols=492 Identities=21% Similarity=0.313 Sum_probs=414.8
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhh
Q 001310 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1103)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~ 81 (1103)
+-|++||+.|+|..+||.+|+.+||.|||+.+. ++.|.+++++|+|+.++..+..+. ++++....++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999998764 3335556679999999999
Q ss_pred hhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCcccccc
Q 001310 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1103)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1103)
||++..|...+|+.+||+...++. ++.++|++|+.-+..++-....+... .......|++|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988886 57788999988766544322222111 112357899999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001310 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1103)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (1103)
+|++||++||+||+++|+++|.||| ..+..|||.||.|.+ .+ +|+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~----------------- 214 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPS----------------- 214 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCc-----------------
Confidence 9999999999999999999999999 555689999999987 33 233
Q ss_pred CcccccccccCCCCCCcceeccCCCCCCccccCCccccccccCCcccccCcccCCCCCCCCCcchhhccccccCCccccC
Q 001310 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1103)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~~~~~~~~~~~~~~~~~~ 321 (1103)
T Consensus 215 -------------------------------------------------------------------------------- 214 (519)
T KOG0293|consen 215 -------------------------------------------------------------------------------- 214 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1103)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1103)
...++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.- ...+.||..+|..
T Consensus 215 ---qt~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 215 ---QTWQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred ---hhhhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 33467889999999999999999 699999999999999876554221 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1103)
Q Consensus 402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1103)
+.||||.+||++|+.+..+.+||+.+|+...... .+|...+.+++|.|||. .+++|+.|++|..||++ |..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998766432 24668999999999999 79999999999999954 5556666
Q ss_pred ecCC-CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1103)
++-. ..|.++++ +.||.++++.+.|..|++++..+...+. +.....+|++++.|.|++++++.-. +..+++|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 6544 55888888 5588999999999999999988765554 3345568999999999999988765 4459999
Q ss_pred eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEE
Q 001310 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~ 639 (1103)
|++....++.+.||......|.++.-..+..++++||+|+.|+||+..+|+++..+.+|. ..|++|+|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEecCCCCHHHhhc
Confidence 999999999999998666667766555666899999999999999999999999999885 4699999999 5678999
Q ss_pred EECCCeEEEEEcC
Q 001310 640 IANENRIKILETP 652 (1103)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1103)
+++||+|+||...
T Consensus 501 asDDgtIRIWg~~ 513 (519)
T KOG0293|consen 501 ASDDGTIRIWGPS 513 (519)
T ss_pred cCCCCeEEEecCC
Confidence 9999999999765
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-61 Score=463.42 Aligned_cols=491 Identities=18% Similarity=0.279 Sum_probs=401.5
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhh
Q 001310 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1103)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q 79 (1103)
-..||||||.|||+|+.+++++++||+|+++++| ++.|.+.|.+|+||++++.++++ +++.+.+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4568999999999999999999999999999998 89999999999999999999988 5666678999999
Q ss_pred hhhhhhcCCCHHHHHHHHHhhccc---cCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCc
Q 001310 80 NFFEALDGHDIAKALNILKKDLKD---FAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP 156 (1103)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~---~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~ 156 (1103)
..+||+|.++...|..+||+ ..| +.+.++++|-+|+.||..+.++..+.+. +..++.|+. .|.+.+..++
T Consensus 80 ivlEliELREL~tAR~~lRQ-TdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV 152 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQ-TDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEV 152 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhc-cCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCce
Confidence 99999999999999999997 344 4556899999999999999999888733 245777763 3444444433
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccC
Q 001310 157 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 236 (1103)
Q Consensus 157 ~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 236 (1103)
- .+||+||..||+||++||+++.+.|..+ ...||..-....
T Consensus 153 ~--------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K----------------------------- 193 (508)
T KOG0275|consen 153 H--------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMK----------------------------- 193 (508)
T ss_pred E--------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhh-----------------------------
Confidence 3 2899999999999999999997665311 012222000000
Q ss_pred CCCCcCcccccccccCCCCCCcceeccCCCCCCccccCCccccccccCCcccccCcccCCCCCCCCCcchhhccccccCC
Q 001310 237 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316 (1103)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~~~~~~~~~~~~~ 316 (1103)
...|..||.+..
T Consensus 194 ----------------------------------------------~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 194 ----------------------------------------------DQEEERYPTQLA---------------------- 205 (508)
T ss_pred ----------------------------------------------hhHhhhchHHhh----------------------
Confidence 001223443331
Q ss_pred ccccCCccceeEecc-cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCC
Q 001310 317 TSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1103)
Q Consensus 317 ~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 395 (1103)
+.++ +.+..+.|..|||||+ +|++|+.||.|.+||..+|+..+..++..-| -+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeec
Confidence 2222 4456789999999999 6999999999999999999987754432111 13347
Q ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+. +.|+..|+|+.||.|+. .+++++.|.+++|.-+.+|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999988532 38999999999999999 6999999999999999999
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC--ccEEEEEEccC-CCEEEEEecCCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSAN-GRRLFSCGTSKE 552 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~d-g~~l~~~~~~~~ 552 (1103)
+++..++||...|+...| +++|..+++++.||+|++|+..+.++..+++..+ .+|.++..-|. ...+++|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999998 5588999999999999999999999888776543 47788877774 456777754
Q ss_pred CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
.+++++.++. |+.++.+.......+...++..+|.|.++++.++|+.++.|...+|++..++..|.. .+..++-+|
T Consensus 414 -sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 5569998874 788888876654566777888999999999999999999999999999999988754 578999999
Q ss_pred CCCEEEEEECCCeEEEEE
Q 001310 633 NGTLLAVIANENRIKILE 650 (1103)
Q Consensus 633 ~g~~l~~~~~dg~i~iw~ 650 (1103)
..+.+++-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-59 Score=496.96 Aligned_cols=577 Identities=18% Similarity=0.252 Sum_probs=494.2
Q ss_pred EEecCCCceEEEEEcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCC
Q 001310 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 418 (1103)
++||++|+ +|++... ..|.+-|+.+++.. .. .-.+....+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 6777654 46899999999863 21 1234567899999999999999999999
Q ss_pred eEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC
Q 001310 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1103)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1103)
.+++|++.+|+.++ .++. |..||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 4556 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc
Q 001310 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1103)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1103)
+...|++|..|+++++||+..... ...+..|...+++++|++|+..+++++. +..+.+||+.+-+..+.+...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996554 6688889999999999999999999987 6679999998777777766544
Q ss_pred cCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 577 ~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
.+.++.+-++ +.+++++|.+|.+++||.++++++....... ...+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777777777 6799999999999999999998887665443 233666666666667777788899999999
Q ss_pred CCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCc
Q 001310 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1103)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 731 (1103)
++.+....+-+..+.|..+.|- .|+.++++.++..+.+|+++.. ...|..+ .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----e
Confidence 9999999999999999988886 5788899999999999999665 3334422 4
Q ss_pred cccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1103)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 811 (1103)
+|...|.++....+|-.|++++.|.++++|.++.+...... + -...+|.+.|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~------------------~----a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC------------------V----AQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh------------------h----hhhcccccccceeeec
Confidence 69999999998888899999999999999998433210000 0 0122699999999998
Q ss_pred cCC-CEEEEEc-CCeEEEEEcCCcee-----e----EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310 812 KND-AYLFSAS-GGVISLYIVMTFKT-----I----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1103)
Q Consensus 812 ~d~-~~l~~~~-dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1103)
..+ .++++++ |.++++|++...+. . .+...|...|++++++| +.+++|+|+.|++.+||+++......
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 765 6777777 89999999975211 1 12346899999999999 88999999999999999999999999
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeE
Q 001310 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1103)
Q Consensus 881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v 959 (1103)
++.||...|.++.|+|..+.|||+|.|++|+||.+++.. +++++.||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 999999999999999999999999999999999999955 8889999987 8999999999999998 599999
Q ss_pred EEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
++|++.+++|..+ +..|+..|++++.++++.+++||+.||.|.+|.=.|.
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999998 7899999999999999999999999999999975553
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-56 Score=474.36 Aligned_cols=589 Identities=13% Similarity=0.177 Sum_probs=480.5
Q ss_pred ccc-CCCCCCCCCcchhhccccccCCccccCCccce-eE-ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC
Q 001310 292 VSL-KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-AQ-TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1103)
Q Consensus 292 ~~~-~s~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~-~~-~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~ 368 (1103)
++| |.-..|++++..+......... .++.-+... +. .-.+-.+.+++++.+||++ +|++++....+++|++.+|+
T Consensus 18 piYtGG~~~~s~nG~~L~t~~~d~Vi-~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 18 PIYTGGPVAWSSNGQHLYTACGDRVI-IIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGK 95 (775)
T ss_pred ceecCCceeECCCCCEEEEecCceEE-EEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccch
Confidence 344 4458888888887766543110 111112222 11 1234567899999999998 68999999999999999998
Q ss_pred eeeeeeeeEeeccccccceeeeeccC-CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEE
Q 001310 369 KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447 (1103)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~ 447 (1103)
.++. ++. |+++|.-++|+|.|..||+|+.|+.++|||+..+.+.. .|+||.+.|.++
T Consensus 96 ~irs-------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl 153 (775)
T KOG0319|consen 96 LIRS-------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSL 153 (775)
T ss_pred HhHh-------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEE
Confidence 8765 444 99999999999999999999999999999999987666 799999999999
Q ss_pred EEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec
Q 001310 448 AFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1103)
Q Consensus 448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1103)
.|.|+-....|++|+.|+++++||+.+.. ++.++..|.+.|+++++.+ |+..+++++.|..+.+||+..-+.....+
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheec
Confidence 99999887789999999999999999654 4888999999999999954 67899999999999999996655554444
Q ss_pred CCCccEEEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310 527 APGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1103)
Q Consensus 527 ~~~~~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 601 (1103)
.. ..+.++.+-++ |.++++++. ++.+++||..+++.+....... ...+..+...+....++....|..
T Consensus 232 ~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQn 304 (775)
T KOG0319|consen 232 LY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQN 304 (775)
T ss_pred hh-hheeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccce
Confidence 32 35666677666 668888875 6779999999998876665543 233666666677778888889999
Q ss_pred EEEEECCCCeeEEEEcCCCCCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceee
Q 001310 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1103)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 680 (1103)
+.++|.++.+....+-+.. ..|..++|- |+.+++++++..+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 305 l~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~------- 374 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW------- 374 (775)
T ss_pred EEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------
Confidence 9999999999988887653 458888875 67899999999999999998887666 888999999888743
Q ss_pred eeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC-cEEEEeecCceEE
Q 001310 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHL 759 (1103)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~ 759 (1103)
..|.++++++.|+++++|.++.... .........+|.+.|.+++++..+ ..+++++.|++++
T Consensus 375 ---------------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 375 ---------------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred ---------------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 4577899999999999998832211 111122336799999999998766 4678888999999
Q ss_pred EeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEE
Q 001310 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 838 (1103)
Q Consensus 760 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~ 838 (1103)
+|+++..+.... .. ..........|...|+|++++|+.+++|+|+ |.+.+||+++.+....+
T Consensus 438 ~W~l~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 438 LWDLPKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred EecCCCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 999987321000 01 1111122335999999999999999999999 89999999999999999
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 001310 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1103)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~ 918 (1103)
+.+|...|.++.|+| ..+.+|+++.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|+++++
T Consensus 501 LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999999999 7889999999999999999999999999999999999999999999999999999999999997
Q ss_pred ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCC
Q 001310 919 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 966 (1103)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~ 966 (1103)
+ +...+..|.. .|.+++.+|.+.++++ +.|+.|.+|.=.+
T Consensus 580 e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 580 E-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred h-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 6 7778888887 9999999999999998 4999999997544
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-52 Score=429.08 Aligned_cols=576 Identities=15% Similarity=0.196 Sum_probs=464.7
Q ss_pred ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1103)
Q Consensus 337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 416 (1103)
-.-+.-.|.|+.+|.+.+ ..|.+-++++...... +.+|...++-..|||.|-|+|+|..
T Consensus 21 ~~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~ 79 (603)
T KOG0318|consen 21 PIIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDV 79 (603)
T ss_pred ceEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCC
Confidence 344556788888887755 6788888887765433 7889999999999999999999999
Q ss_pred CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE--cCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1103)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1103)
.|.|+|||....+.+. ..+++.-.++|..++|++|+++ ++.. +.++..+++-.++|..+..+.||...|.++.|-
T Consensus 80 sG~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~K 156 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFK 156 (603)
T ss_pred cCcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeecc
Confidence 9999999998744332 2356677889999999999996 4433 344445555556899999999999999999997
Q ss_pred ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc
Q 001310 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1103)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1103)
|+.. -++++|+.|++|.+|+-...+-...+..|..-|.++.|+|||.++++++. |+.+++||-.+|+.+..+...
T Consensus 157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCC
Confidence 7643 58999999999999987777777788889999999999999999999987 667999999999999999966
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC-CCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
..|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|. ...|++.+.+|.|.+++...
T Consensus 232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccC
Confidence 6677999999999999999999999999999999999999987654311 12344554 56899999999999999999
Q ss_pred CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccc
Q 001310 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1103)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 733 (1103)
...+..+.+|...|+++..+ +|++++.+++.||.|.-|+...+..... ....|
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~~-----~g~~h 362 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDRL-----AGKGH 362 (603)
T ss_pred CChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccccc-----ccccc
Confidence 99999999999999999997 7889999999999999999876544432 23458
Q ss_pred cccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1103)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 813 (1103)
...|.+++.+..+. +++.+.|.++++.++..+...... . .+ ......+++..+|
T Consensus 363 ~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d 416 (603)
T KOG0318|consen 363 TNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSD 416 (603)
T ss_pred cceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCC
Confidence 99999999887666 788888889988776443220000 0 01 2334458899999
Q ss_pred CCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEeccCCCCEEE
Q 001310 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTG 891 (1103)
Q Consensus 814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~V~~ 891 (1103)
+.+++.+.++.|.+..-.++ +.++. ..-...++|++| ++..+|+|+.||.|+||.+..++.. ..+..|.++|++
T Consensus 417 ~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred CCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 88888888766666542222 22222 334678999999 9999999999999999999976533 455679999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEE
Q 001310 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL 970 (1103)
Q Consensus 892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~ 970 (1103)
+++|||+.+||++...+.+.+||+.+.+...... .-|. +.|.+++|||+..++|+| -|..|.||+++.....
T Consensus 493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999999999999999999999977532111 1122 379999999999999996 8999999999987766
Q ss_pred EEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
......|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 566 i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 66678898889999995 45678889999999999974
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-51 Score=435.43 Aligned_cols=604 Identities=17% Similarity=0.284 Sum_probs=458.9
Q ss_pred cccCCccceeEecc-cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC
Q 001310 318 SFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1103)
Q Consensus 318 ~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1103)
++.++-+..-.+|. .+...|++++.||+|. +|++....|...+-++.....++.++| +
T Consensus 38 sv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k 96 (893)
T KOG0291|consen 38 SVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------K 96 (893)
T ss_pred EEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------c
Confidence 33444444444543 5567999999999997 677778889999999998888877554 4
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
.+|.|+.|||||+++|+|.. +.+.||....... +....+..+|...|.++.|+.|.+ ++++|+.|.++++|+
T Consensus 97 ~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFG 173 (893)
T ss_pred CccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEE
Confidence 78999999999999999854 4699998754322 223446778999999999999999 899999999999999
Q ss_pred CCCCce--eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310 472 AVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 472 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
++..+. .+.+.+|.+.|.++-|. .+...+++.+.||.+.+|..+.......-. .. ..+|.--.-.-.
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~-~k--------d~eg~~d~~~~~ 242 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKA-EK--------DEEGSDDEEMDE 242 (893)
T ss_pred eccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccc-cc--------cccccccccccc
Confidence 987666 57789999999988874 466789999999999999876431111000 00 001100000000
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
+++....-..|-. ..+.+-... ...|++.+|++..+.|++|-..|...+|.+....+++.+.... ..|..++
T Consensus 243 ~~Eek~~~~~~~k----~~k~~ln~~--~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~--~~I~t~~ 314 (893)
T KOG0291|consen 243 DGEEKTHKIFWYK----TKKHYLNQN--SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD--QKILTVS 314 (893)
T ss_pred cchhhhcceEEEE----EEeeeeccc--ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc--ceeeEEE
Confidence 0010000112211 001111111 2679999999999999999999999999999999999998653 3589999
Q ss_pred EecCCCEEEEEECC-CeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310 630 FNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1103)
Q Consensus 630 ~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1103)
|+..|.+++.|+.. |.+.+|+..+...+
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYV--------------------------------------------------- 343 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYV--------------------------------------------------- 343 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeecccee---------------------------------------------------
Confidence 99999999999875 78999988754322
Q ss_pred ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1103)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1103)
+..++|...+.+++++|||+++++|+.||.|+||| ..+|
T Consensus 344 -------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----------------------~~Sg 382 (893)
T KOG0291|consen 344 -------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----------------------TQSG 382 (893)
T ss_pred -------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEe----------------------ccCc
Confidence 22345788899999999999999999999888776 5667
Q ss_pred CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCCCEEEEEeCCC
Q 001310 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDS 866 (1103)
Q Consensus 789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg 866 (1103)
.|+.++. .|.+.|+.+.|+..|+.+++.+ ||+|+.||+..++..+++..+. ....|++..| .|.++++|+.|.
T Consensus 383 fC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~ 457 (893)
T KOG0291|consen 383 FCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDS 457 (893)
T ss_pred eEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccce
Confidence 7787765 4999999999999999999998 9999999999999999998655 3678899999 899999999887
Q ss_pred -eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001310 867 -TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1103)
Q Consensus 867 -~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 945 (1103)
.|++|++++|+.+..+.||.++|.+++|+|+|..|||+|.|++|++||+-.... ....++... .+..++|+
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i~s-------dvl~vsfr 529 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEIRS-------DVLAVSFR 529 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEeecc-------ceeEEEEc
Confidence 899999999999999999999999999999999999999999999999976421 111222222 58999999
Q ss_pred CCCCEEEEE-eCCeEEEEECCCceEEEEee------C-------------CCCcCeEEEEEccCCCEEEEEecCCcEEEE
Q 001310 946 KDQTRFLLV-HETHLAIYEAEELTCLKQWF------P-------------ISSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus 946 ~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~------~-------------~h~~~v~~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
|||+.||++ -||.|.+||+..+..+..+- . ......+.+++|+||..+++||....|++|
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 999999995 89999999998776653311 0 125788999999999999999999999999
Q ss_pred eCCCceeEEeeccccccCCC---------------C----CC-----Cceee-----------EeeccCCceeeEEEEEC
Q 001310 1006 EASNLEVQCRILSTAYLRPT---------------T----SH-----DKILC-----------FCYCSCLHVYPHAIAAH 1050 (1103)
Q Consensus 1006 d~~~~~~~~~~~~~~~~~~~---------------~----~~-----~~~~~-----------~~~~~~~~v~~~~~~~~ 1050 (1103)
++.++-++++|..+....-. . +. ...+- -.+.....|...++.|+
T Consensus 610 ~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fs 689 (893)
T KOG0291|consen 610 DVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFS 689 (893)
T ss_pred ECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEEC
Confidence 99999998887733321110 0 00 00000 00122335777899999
Q ss_pred CCCCcEEEEEecCCcEEEEcc
Q 001310 1051 PLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1051 p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
|. |+-+++++..| |.||.+
T Consensus 690 Pt-graFAaatTEG-l~IYsl 708 (893)
T KOG0291|consen 690 PT-GRAFAAATTEG-LLIYSL 708 (893)
T ss_pred CC-cCeeeeecccc-eEEEec
Confidence 99 89999999888 677776
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-49 Score=406.46 Aligned_cols=541 Identities=12% Similarity=0.200 Sum_probs=433.2
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
...+.+|...++-..|||.|- ++|+|...|+|+|||....+.+...+|+ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 466789999999999999997 7999999999999999876655544433 3568999999999
Q ss_pred CCCEEEEEeCC--CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
|+++|++.+.. +..+++-+.+|..+. .+.||...|++++|-|.... .++||++|++|.+|+-.--+-..+++.|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 99999887543 334444444554455 68899999999999987665 8999999999999985555666778889
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1103)
...|.++.|+| ||.++++++.||.+.+||-.+++....+. .|.+.|.+++|+||++.+++++. +..++|||
T Consensus 190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 99999999955 78999999999999999999999988887 78889999999999999999987 55699999
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
+.+.++++++.....-......+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|++++.+||+++|++|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence 99999999987654222344455564 5689999999999999999999888888774 5699999999999999999
Q ss_pred CCCeEEEEEcCCCCeeEec-cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCC
Q 001310 642 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1103)
Q Consensus 642 ~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 720 (1103)
.||.|.-|+...+..-+.. +.|...|.+++.+ +...+++.+.|.++++.++.....
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence 9999999999988665443 6788888877775 235577888889998887654332
Q ss_pred ccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCC
Q 001310 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 800 (1103)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1103)
.....+.+. ..-.+++..+++..++.+...+.+.+-+... +... .
T Consensus 397 t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~ 441 (603)
T KOG0318|consen 397 TKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----P 441 (603)
T ss_pred cccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----c
Confidence 222222221 2233788888887777776665554432211 1111 1
Q ss_pred CCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1103)
......++|++|+++.+|+|+ |+.+++|.+...... ..+..|.++|++++||| |+.+||+|+..+.+.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence 455778999999999999998 799999999865533 34566999999999999 99999999999999999999987
Q ss_pred eEE-EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC
Q 001310 878 VIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1103)
Q Consensus 878 ~~~-~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 956 (1103)
... .+.-|+..|.+++|||+.+++|||+-|-.|.||+++... ..+.....|.. .|..+.|-.+...+-+|.|
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCc
Confidence 643 334499999999999999999999999999999998733 12444555554 6999999998888888999
Q ss_pred CeEEEEECC
Q 001310 957 THLAIYEAE 965 (1103)
Q Consensus 957 ~~v~iwd~~ 965 (1103)
..|++|.+.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999864
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-49 Score=416.95 Aligned_cols=508 Identities=14% Similarity=0.218 Sum_probs=400.7
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
+.+|+|+.-+||.- +||+|..||.|+||+..++..+.+ +.||...|+++.|...|..||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 35899999999986 899999999999999998876654 8899999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1103)
|+.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.++++++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998754333 7899999999999998777 8999999999999999999999999999999999999
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCee------------E-EecCCCccEEEEEEccCCCEEEEEecCC---------
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGAR------------V-DYDAPGLGCTRMAYSANGRRLFSCGTSK--------- 551 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------- 551 (1103)
.+ ..+++++.|+.+++|++...... - ......+....++..++++++++-+.+.
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 54 58999999999999998211000 0 0000111122233333334333332111
Q ss_pred -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001310 552 -----------------------------------------------------------------EGESFLVEWNESE-G 565 (1103)
Q Consensus 552 -----------------------------------------------------------------~~~~~i~iwd~~~-~ 565 (1103)
-.++.+..|.+.. +
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0022344444332 1
Q ss_pred ee--------EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310 566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1103)
Q Consensus 566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 637 (1103)
.. ...+.+|. ..|++++++.+...+++|+ .+.+++|+..+.+++.++... .+.+..|-|.++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCccccccceeeeccch---hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 11 12344555 8999999998876555554 688999999999999999754 47889999999999
Q ss_pred EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
++|...|.+.+||+.+...+.+++.|.+.++.++.+ ||++.+++++.|.+|++|+...
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEEE
Confidence 999999999999999998888888888888777775 6777777788888888887652
Q ss_pred cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCC
Q 001310 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1103)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1103)
.... ++.... ++..-.. .+.
T Consensus 486 ~~~~---------~gt~~k------------~lsl~~~------------------------------------rtL--- 505 (888)
T KOG0306|consen 486 VVSV---------PGTQKK------------VLSLKHT------------------------------------RTL--- 505 (888)
T ss_pred Eecc---------Ccccce------------eeeeccc------------------------------------eEE---
Confidence 1100 000000 0000000 011
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001310 798 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1103)
Q Consensus 798 ~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1103)
.-...|.|+.+||||++||++- |+++++|-+.+.+....+.+|.-+|.|+.+|| |++++++|+.|.+|++|-++-|
T Consensus 506 --el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 506 --ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred --eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc
Confidence 1467899999999999999997 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC
Q 001310 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1103)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 956 (1103)
.|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-+.-+
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe------------------------------------- 625 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE------------------------------------- 625 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-------------------------------------
Confidence 9999999999999999999999999999999999999887622
Q ss_pred CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
++.. +.+|...|++++.+|+|.+++++|.|.+|++|......++
T Consensus 626 ------------~iq~-L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 626 ------------EIQK-LDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred ------------hhee-eccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 2222 5678889999999999999999999999999998774443
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-48 Score=413.73 Aligned_cols=578 Identities=15% Similarity=0.178 Sum_probs=444.7
Q ss_pred CceEEEe-cCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 336 ~V~~v~~-spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
++..+.. +..|+++.+ +.-..|.+||+.+|+..... +...-...|+|+.-+||.-.||+|
T Consensus 23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence 3433333 346874333 33468999999999654321 122344689999999999999999
Q ss_pred eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1103)
..||.|+||+..++.... .+.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..++||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875433 7889999999999999999 89999999999999999989999999999999988874
Q ss_pred ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-------e-
Q 001310 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-------A- 566 (1103)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-------~- 566 (1103)
. +..++++.+.|+.|++||+++..+..+...+...+..+++.+ +.+++++. +..+.+|++... .
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 3 457999999999999999999999999999999999999988 67777765 334999988211 0
Q ss_pred ----eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE--------cCC---------------
Q 001310 567 ----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--------DAG--------------- 619 (1103)
Q Consensus 567 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~--------------- 619 (1103)
....+.... ++....++..++++++++-+.|..+.++.+.+.+.+... ..+
T Consensus 231 ~s~~~~G~~~rqs--k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQS--KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeecc--CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 111121111 344555666778889999999999999988653211000 000
Q ss_pred ---------CCCCCCceEEEecCCC---EEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCc
Q 001310 620 ---------GGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1103)
Q Consensus 620 ---------~~~~~v~~v~~s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 687 (1103)
.....+.++.|-|.++ .|+. -.++++.+|.++......
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~----------------------------- 358 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS----------------------------- 358 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-----------------------------
Confidence 0112344555655432 2222 445556665554310000
Q ss_pred eEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1103)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~ 767 (1103)
+.....-.+...+|...|+++++|.+...+++++. +.+++|
T Consensus 359 --------------------------------p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW------ 399 (888)
T KOG0306|consen 359 --------------------------------PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW------ 399 (888)
T ss_pred --------------------------------ccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEE------
Confidence 00001111222459999999999999886655554 455555
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCe
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA 846 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 846 (1103)
+..+.+|+.+.. ...+.+..|-|.++++++|. .|.+.+||+.+...+.++++|.+.|
T Consensus 400 ----------------n~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 400 ----------------NRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred ----------------EccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 566677777753 34788999999999999998 5999999999999999999999999
Q ss_pred eEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----ceeE--------EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310 847 TSLAFNPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1103)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~~~~--------~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw 913 (1103)
.+++.+| |++.+++|+.|.+|++||..- |... .+++ -.+.|.|+.+||||++||.+=-|.+|+||
T Consensus 458 Wsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 458 WSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 9999999 999999999999999999752 2211 1122 45789999999999999999999999999
Q ss_pred EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCE
Q 001310 914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 992 (1103)
Q Consensus 914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 992 (1103)
-+++-+ ..-.+-||.- +|.|+..|||++++++| .|.+|+||-++=|.|-.++ -+|...|.++.|.|+..+
T Consensus 536 flDtlK-----FflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 536 FLDTLK-----FFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLPKTHL 606 (888)
T ss_pred Eeccee-----eeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEccccee
Confidence 999833 4455677776 99999999999999995 8999999999999999984 479999999999999999
Q ss_pred EEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 993 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 993 l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
+.|+|.|+.|+-||-+..+.+..+. +|...|+++++. |+ |.++++++.|.+|++|+-
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L~-------------------~H~~ev~cLav~--~~-G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKLD-------------------GHHSEVWCLAVS--PN-GSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEEecCcceEEeechhhhhhheeec-------------------cchheeeeeEEc--CC-CCeEEeccCCceeEeeec
Confidence 9999999999999999999888777 788889977665 44 899999999999999985
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-51 Score=398.36 Aligned_cols=333 Identities=20% Similarity=0.320 Sum_probs=305.0
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
..|...+.||.+.|-|++|||+|+ .||+|+.|.++++||+.+..+.++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 578888999999999999999998 599999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-----CCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6889999999999965 556 7999999999999999999999
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEc-----------cCCC-----
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 542 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~dg~----- 542 (1103)
..+.+|+.+|+|++|- ...++++++.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwG---G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG---GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc---CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 23599999999999999999999999999999999999887 2233
Q ss_pred --------------------EEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310 543 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1103)
Q Consensus 543 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 601 (1103)
.|++++. +..+++|+... .+++..+.+|. ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 66799999764 44778888888 89999999999999999999999
Q ss_pred EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeee
Q 001310 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1103)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 681 (1103)
|++||..+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999977 5679999999999999999999999999999999999999999999999997
Q ss_pred eccCCceEecCCCCCCCccceeecccccccccc
Q 001310 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1103)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~ 714 (1103)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 8899999999999999995
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-46 Score=395.92 Aligned_cols=547 Identities=13% Similarity=0.164 Sum_probs=434.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
.+.|++||..+++-..+ .|.++|+...+... ..-.+...|.+++.||+|. ++++...+|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~T---l~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYT---LPLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCccee---EEeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 48899999999987544 59999998865332 2235778899999999999 899999999999999888888887
Q ss_pred eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--------eEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
+. ...+|.+++|+| ||.+++.+ ..+.+.||....... ..++.++-..|.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 567899999965 66665554 467899997654322 3356677789999999999999999876
Q ss_pred CceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001310 553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 609 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------- 609 (1103)
|...++|++...+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 66799999887665 55667777 9999999999999999999999999997761
Q ss_pred --Cee---------EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310 610 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1103)
Q Consensus 610 --~~~---------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 678 (1103)
++. ....-.......+.+.+|++..+.|++|-..|...+|+++.-..+..+..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi---------------- 305 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------------- 305 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence 111 00111111224578888888888888988888888888876655544321
Q ss_pred eeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ce
Q 001310 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV 757 (1103)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~ 757 (1103)
...+|..++|+..|..++.++.. |.
T Consensus 306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence 23567888899999999998886 99
Q ss_pred EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee
Q 001310 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1103)
Q Consensus 758 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~ 836 (1103)
+.||+|+.+.. . +...+|...++++++||||+++|+|+ ||+|+|||..++-|+
T Consensus 332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 99999877543 1 22336999999999999999999998 799999999999999
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC-CCCEEEEEEccCCCEEEEEeCCC-eEEEEE
Q 001310 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDA-QIFVWD 914 (1103)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~dg-~I~iwd 914 (1103)
.++..|...|+.+.|+. .++.+++.+-||+|+.||+..++..+++... .-...|++..|.|.++..|+.|. .|.+|+
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 99999999999999999 8999999999999999999999999998853 33457888888899999988886 599999
Q ss_pred cCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEE
Q 001310 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 993 (1103)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1103)
+++|+ .+..+.||.. +|.+++|+|+|..||++ -|.+|++||+-........+ .+...+..++|+|||+-|
T Consensus 465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence 99987 6778888886 99999999999999995 89999999996543222212 246789999999999999
Q ss_pred EEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEee-ccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCY-CSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 994 ~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
++++.||.|.+||+..+.....+.....+..+......+-... ..+... ..+++++| |..+++||....|++|++.
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F--tti~ySaD-G~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF--TTICYSAD-GKCILAGGESNSICIYDVP 612 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce--EEEEEcCC-CCEEEecCCcccEEEEECc
Confidence 9999999999999999988877765544433332222222111 122222 57899998 9999999999999999975
Q ss_pred C
Q 001310 1073 E 1073 (1103)
Q Consensus 1073 ~ 1073 (1103)
+
T Consensus 613 ~ 613 (893)
T KOG0291|consen 613 E 613 (893)
T ss_pred h
Confidence 4
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-49 Score=389.45 Aligned_cols=367 Identities=20% Similarity=0.289 Sum_probs=295.2
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77899999999999999999999999999999999975444 8899999999999999999 899999999999999
Q ss_pred CCCCcee-EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
..+|+++ ..+.+|...|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 688999999999998653 23466667777765
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
|+.++|||+..++++..+.+|. .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5558889988899999999998 999999998764 899999999999999999999999998876 5888888
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1103)
Q Consensus 631 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1103)
+.|- .|-+|..|.+=+-....+......+... +.+
T Consensus 297 sTdy-~LRtgaf~~t~~~~~~~se~~~~Al~rY-~~~------------------------------------------- 331 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGRKPKSFSEEQKKALERY-EAV------------------------------------------- 331 (480)
T ss_pred cchh-hhhccccccccccCCChHHHHHHHHHHH-HHh-------------------------------------------
Confidence 8642 2333333321111000000000000000 000
Q ss_pred ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc
Q 001310 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1103)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1103)
.-..+..+++++.|.++.+|+-...+. +
T Consensus 332 -------------------------------~~~~~erlVSgsDd~tlflW~p~~~kk---------------------p 359 (480)
T KOG0271|consen 332 -------------------------------LKDSGERLVSGSDDFTLFLWNPFKSKK---------------------P 359 (480)
T ss_pred -------------------------------hccCcceeEEecCCceEEEeccccccc---------------------c
Confidence 001224456666666666665221110 0
Q ss_pred eeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 001310 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1103)
Q Consensus 791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1103)
+ ..+ .+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-+.|..++|+. |.++|++|+.|.+++
T Consensus 360 i--~rm--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 I--TRM--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred h--hhh--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 0 011 25999999999999999999999 89999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1103)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd 914 (1103)
+|++.+.++...+.||.++|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999994
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-41 Score=358.35 Aligned_cols=618 Identities=14% Similarity=0.150 Sum_probs=417.9
Q ss_pred ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-
Q 001310 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1103)
Q Consensus 337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~- 415 (1103)
-..++.+|-.. ++|- -....|.+||+...++-+ ++..|..+++++|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566666654 3332 123789999988766543 3667889999999999999999984
Q ss_pred -CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCceEEEE
Q 001310 416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1103)
Q Consensus 416 -~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1103)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+... .|.+||++.......- .-...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEE
Confidence 56679999999876555 6789999999999999999 788777544 5778887655443322 1345677888
Q ss_pred eeecCCccEEEEEECCCeEEEEEcCCCCeeEE---ecCCCcc--------EEEEEEc----cCCCEEEEEecCCCCceeE
Q 001310 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLG--------CTRMAYS----ANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~--------i~~~~~s----~dg~~l~~~~~~~~~~~~i 557 (1103)
| +++|.++++.+ ...|++|.++....... +.+...- ...++.- .+..+.++. .|.+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL 243 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL 243 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence 8 66888888876 46799999887652221 1111100 0011100 011111111 1112
Q ss_pred EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------------
Q 001310 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------------------ 619 (1103)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------ 619 (1103)
. ...+.+++.++..-. ....+|++.+ .++|++|+.+|.|++|+..+-.-+.+++..
T Consensus 244 v--EFSsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 244 V--EFSSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred e--eechhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 1 122222222222111 1334566654 578999999999999998765444333211
Q ss_pred ----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee---EeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1103)
Q Consensus 620 ----~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1103)
...+....+.|++....|.+...|..+++||+..-..+ ..+-.|...|+.+..-|....-. ....
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac--- 389 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC--- 389 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc---
Confidence 11233456889999999999999999999999876443 33445777777766554211100 0000
Q ss_pred CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1103)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 772 (1103)
.|.+ .+++++.|++||+|+++.........- .| ++.+-..++.. |+...+-.
T Consensus 390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR---------Ni----ls~~l~ki~y~--d~~~q~~~---------- 441 (1080)
T KOG1408|consen 390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR---------NI----LSANLSKIPYE--DSTQQIMH---------- 441 (1080)
T ss_pred --CCcc-ceeEecCCCcEEEeecccccccceeec---------cc----chhhhhcCccc--cCchhhhh----------
Confidence 1333 378999999999999885332222110 00 11111111111 11000000
Q ss_pred ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEE
Q 001310 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 851 (1103)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 851 (1103)
.....++|-.... .......+.++++||+|++||+|. .|.+++|++...+.+..+.+|..+|.|+.|
T Consensus 442 ----d~~~~~fdka~~s--------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 442 ----DASAGIFDKALVS--------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred ----hccCCcccccchh--------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 0001111111100 012567899999999999999998 599999999999999999999999999999
Q ss_pred cCC--CCCEEEEEeCCCeEEEEEcCC-ceeEEEeccCCCCEEEEEEccCC--CEEEEEeCCCeEEEEEcCC---Cceeee
Q 001310 852 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDG---WGIQTC 923 (1103)
Q Consensus 852 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~l~s~s~dg~I~iwd~~~---~~~~~~ 923 (1103)
|-. ..++||+++.|..|.|||+.. ..+++++.+|+..|+++.|...| ..++++|.|+.|.+--... |.+..
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~- 588 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP- 588 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc-
Confidence 853 357999999999999999975 46788999999999999999887 7899999999765432221 11111
Q ss_pred eeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCC
Q 001310 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
+..++. ++ ..+..|+..|..+++++ +.|..|+||++.+|+....+... |.+..-.+...|.|-|||+...|.
T Consensus 589 r~t~t~-~k----tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 589 RHTQTL-SK----TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred cccccc-cc----ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 011111 11 35889999999999999 58999999999999999886554 456777889999999999999999
Q ss_pred cEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1001 TLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1001 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
++.++|..+|++++++. ||+..|. .+.|.+| -..|++++.||.|.||.++
T Consensus 664 tl~~~Df~sgEcvA~m~-------------------GHsE~VT--G~kF~nD-CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMT-------------------GHSEAVT--GVKFLND-CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEeccchhhhhhc-------------------Ccchhee--eeeeccc-chhheeecCCceEEEEECc
Confidence 99999999999999988 8888886 5678877 7889999999999999964
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-41 Score=339.79 Aligned_cols=345 Identities=19% Similarity=0.267 Sum_probs=289.4
Q ss_pred CccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC--CCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
+|....+.+. |+.+|.+.+|+|-..-++|+|+.|-+.++|++.. ........+ ..|...--+ -...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence 5666667777 9999999999997765899999999999999864 111110000 000000000 11134689
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
++++|+.+|..||+|+.||.++||+..++. +. ++..|.++|.++.|+.+|. ++++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998743 32 6889999999999999999 89999999999999999999999
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+..|..+-..+.|. +...+++.+.|+.|+++.+....+..++.+|.++|.++.|.|.|.+|++++. |+++.|
T Consensus 313 ~f~~~s~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEe---cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 999999886667764 2247999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
|+.........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999998888999888 899999999975 46899999999999999999999999766 457999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1103)
Q Consensus 631 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1103)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999987776554
Q ss_pred ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1103)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~ 763 (1103)
..+.|..+.|+.+|..+.++..||.+++-|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2344778888989998888888888888764
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.4e-39 Score=341.47 Aligned_cols=606 Identities=14% Similarity=0.150 Sum_probs=426.1
Q ss_pred EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC---EEEEEeC
Q 001310 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~---~las~~~ 416 (1103)
..|.|.+ ++|.|.. ..|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 4566544 789999987653333 2889999999999999888 8999999
Q ss_pred CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc--eeEEeecCCCceE--EEE
Q 001310 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC 492 (1103)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~--~~~ 492 (1103)
|+.|++|.++. +.+.....+.+|...+.|+ ..... ...+...|+++.+||.+..+ ++..+....+.+. +++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 3445555777776655554 43222 22333789999999985555 3333333333333 344
Q ss_pred eeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001310 493 PHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1103)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1103)
+.+.++.-.++.|+.+..|.++.-.+.+ ....+.+|...|.+++|...+. +|++++ .|.+|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 4443444456677778888888655433 4457889999999999988655 445544 37889999765322
Q ss_pred --------------------eE----------EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEE
Q 001310 567 --------------------IK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1103)
Q Consensus 567 --------------------~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~ 614 (1103)
.. ..+.||. +.|.++.|+|.+..|++++.|.++.+|...+. --+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 11 1123555 99999999999999999999999999987654 2222
Q ss_pred EEcC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC---CeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310 615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1103)
Q Consensus 615 ~~~~---~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 688 (1103)
.... .+........-|+|+++.+++-+..|..++|..... .....+.+|...|+.+++.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 2221 122234688999999999999999999999994433 2344568999999999997
Q ss_pred EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc
Q 001310 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1103)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 768 (1103)
|.|.++++.+.|.+-|++-... .......+..| +.|...+.+++|-+....+++++....+++|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~wg-~q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARWG-RQQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeecccc-cccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 6788999999999999977552 22222333222 46899999999999766688888889999999876432
Q ss_pred ----------------ccccccccc---cCCeee--cCCCCCc------------------------eeecc-----CCC
Q 001310 769 ----------------TLSTEATTK---VPPRLY--QPRHGPQ------------------------FMVND-----TTD 798 (1103)
Q Consensus 769 ----------------~~~~~~~~~---~~~~~~--~~~~~~~------------------------~~~~~-----~~~ 798 (1103)
.+.+..... ..-.++ +..+|.. +.... -+.
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 001000000 000000 1111111 11100 013
Q ss_pred CCCCCCeeEEEEecCCCEEEEEcC------CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310 799 SNSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 799 ~~~~~~v~~l~~s~d~~~l~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1103)
.||...|.+++.+|+|+++|+++. ..|++|+..+....+.+.+|.-.|+.++||| |+++|++.+.|.++.+|.
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeee
Confidence 479999999999999999999962 3499999999999999999999999999999 999999999999999998
Q ss_pred cCCce----eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-
Q 001310 873 ARSSE----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD- 947 (1103)
Q Consensus 873 ~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d- 947 (1103)
..... .....+.|+.-|.++.|+||++++||+|.|++|++|......... +... ....++..|+.+++.|-
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~---i~~~-a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY---ISRF-ACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh---hhhh-chhccCCceeeEEeeccc
Confidence 86532 123467899999999999999999999999999999998863111 1110 11222347889988763
Q ss_pred ----CCEEEEE-eCCeEEEEECCC-------ceEE--EE--eeCCCCcCeEEEEEccC----------CCEEEEEecCCc
Q 001310 948 ----QTRFLLV-HETHLAIYEAEE-------LTCL--KQ--WFPISSVPISQATFSCD----------CRMVFTSFVDGT 1001 (1103)
Q Consensus 948 ----g~~l~~~-~d~~v~iwd~~~-------~~~~--~~--~~~~h~~~v~~l~fs~d----------g~~l~t~~~dg~ 1001 (1103)
+..+++| ..|.|.+|.... +... .. -..+|...|..+.|+|- ...|++|++|.+
T Consensus 677 ~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~ 756 (764)
T KOG1063|consen 677 HNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDES 756 (764)
T ss_pred cccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccce
Confidence 2255667 789999999651 1110 00 12346788999999964 235799999999
Q ss_pred EEEEeCC
Q 001310 1002 LSIHEAS 1008 (1103)
Q Consensus 1002 v~vWd~~ 1008 (1103)
+|++++.
T Consensus 757 vri~nv~ 763 (764)
T KOG1063|consen 757 VRIFNVD 763 (764)
T ss_pred eEEeecc
Confidence 9999874
No 16
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.2e-40 Score=345.63 Aligned_cols=509 Identities=15% Similarity=0.193 Sum_probs=379.4
Q ss_pred EecccCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
+.+..|...++|++|||+|+ ++|+|- ....++||++.....+.. +..|...|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 34567788999999999998 689986 456799999998876665 66799999999999
Q ss_pred CCCCEEEEEeC--CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE----
Q 001310 406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1103)
Q Consensus 406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~---- 479 (1103)
|.++|+++.+. |-.|.+||+....... -..-...|.+++|+.||. ++++.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998765 4468899887643222 223456799999999999 788888 5679999987665210
Q ss_pred ---------Ee------------------------ecC-----------------CCceEEEEeeecCCccEEEEEECCC
Q 001310 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1103)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1103)
.+ .|| ...-.+|+. +.++|++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 001 011123333 346899999999
Q ss_pred eEEEEEcCCCCeeEEec------------------------CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 510 KIKAWLYDSLGARVDYD------------------------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 510 ~i~iwd~~~~~~~~~~~------------------------~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
.|++++..+..-..++. ..-....++.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 99999866533222111 00112456788988888888875 666999999876
Q ss_pred eeEEEEecccccCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCeeEEEE------------c-----
Q 001310 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI------------D----- 617 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~----- 617 (1103)
..+.+....-.|...|+.+.--|- ...+++++.|++|++||++.+..-..+ .
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 554433322223356666554431 235889999999999999763211100 0
Q ss_pred ------------------CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCcee
Q 001310 618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1103)
Q Consensus 618 ------------------~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 679 (1103)
.-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++-..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122357899999999999999999999999999999999999999999999998321
Q ss_pred eeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC--cEEEEeecCce
Q 001310 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 757 (1103)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~dg~ 757 (1103)
-..++|++++.|.-|.++|.... ..+.....+|...|+++.|...| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 23578999999999999997632 22222335699999999999888 77899999976
Q ss_pred EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee
Q 001310 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1103)
Q Consensus 758 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~ 836 (1103)
+.. +..... ...+++--.+. . -....+..+++.|..+++++++ |..|+||++.+++..
T Consensus 573 imF-r~~qk~----------~~g~~f~r~t~--------t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMF-RVNQKA----------SSGRLFPRHTQ--------T--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hhe-ehhccc----------cCceecccccc--------c--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 653 221100 01111110000 0 1456788999999999999998 799999999999999
Q ss_pred EEecC---CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310 837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1103)
Q Consensus 837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw 913 (1103)
+.|++ |.+....+...| .|-|||+...|+++.++|+.+|+++.+..||...|+.+.|++|.+.|++.+.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99986 556788899999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q 001310 914 DVDG 917 (1103)
Q Consensus 914 d~~~ 917 (1103)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9875
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=338.82 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.6
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC--C
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 408 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g 408 (1103)
.|.+.+|..+.||+|++ ++|+||-+|.++||+..++..+.+ +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36778999999999998 799999999999999999977665 8899999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
..+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876555 7889999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
.+++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999965 7789999999999999999999999999999999999999999999999976 778999999999999
Q ss_pred EEEecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
..+..|. +.|..+.|+| .|.+|++++.|++++||...+..+++++.+|.. .|.++.+++|+.++++++.|++++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999998 9999999998 688999999999999999999999999998855 599999999999999999999999
Q ss_pred EEE
Q 001310 648 ILE 650 (1103)
Q Consensus 648 iw~ 650 (1103)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-41 Score=334.46 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.4
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1103)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+. ++.||...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 466799999999999999999999999999999875444 89999999999999998422379999999999999999
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||+.+........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6689999999999999999999999999999999999999999999999986
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1103)
|..-+|||+++|+.+..+.+|. .+|.+++|+|+|..+++||.|++++|||++..+.+.+++.|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6668999999999999999988 9999999999999999999999999999999999999988854 599999998
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1103)
Q Consensus 633 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1103)
.|.+|++++.|++++||...+..+++.+.+|...|.++.++ +|+..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999997 78999999999999999
Q ss_pred cc
Q 001310 713 EK 714 (1103)
Q Consensus 713 w~ 714 (1103)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
No 19
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=329.08 Aligned_cols=583 Identities=16% Similarity=0.159 Sum_probs=434.6
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
.|- ..|..-|..++++.+-+.+..+||.+.-..+.. -+.+...|+|++=..+ +..+++
T Consensus 36 ~VP-~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~ 93 (910)
T KOG1539|consen 36 GVP-FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVAS 93 (910)
T ss_pred CCc-eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEec
Confidence 444 555555666788888899999999887766653 2357788998886544 444443
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-cee----EEeecCCCceEE
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYS 490 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~~~~~v~~ 490 (1103)
.. .|.+|.- |+.++. .+.+|...|.-+. +-|. .++++..++.+.||+...+ ..+ .-++...+.|++
T Consensus 94 g~-~i~~~~r--gk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ita 164 (910)
T KOG1539|consen 94 GN-KIYAYAR--GKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITA 164 (910)
T ss_pred Cc-EEEEEEc--cceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceee
Confidence 33 3666543 433332 4567777777664 3466 6889999999999998874 221 222333334777
Q ss_pred EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1103)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1103)
+. ||+---+.++.|+.+|.+.+|++++++...++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+
T Consensus 165 l~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 165 LL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMS 239 (910)
T ss_pred Ee-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEE
Confidence 64 44444457899999999999999999999999999999999999998889999876 66799999999999999
Q ss_pred EecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310 571 YQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1103)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 648 (1103)
|+... +.|+.++|..||+.+++ |+..|.+-+||++..+.+..+. .| ...+....|.|....+++++.|+.+++
T Consensus 240 Fk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 240 FKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKV 314 (910)
T ss_pred EEccc---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeE
Confidence 99766 89999999999976655 6677999999999988877665 34 345889999999999999999999998
Q ss_pred EEcCCC----CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccce
Q 001310 649 LETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1103)
Q Consensus 649 w~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1103)
|-.+++ +.++...+|..+..++.|. ...|..+.+++.|++.+.+.+......+..
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l 373 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQEL 373 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence 866543 5667778899999988887 467888999999999988876532111110
Q ss_pred eeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCC
Q 001310 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1103)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1103)
.. ......++ .+.+. . ... -.-.+
T Consensus 374 ~~-------------~~~~~~~k---------k~~~~----------------------~--------~~~----~k~p~ 397 (910)
T KOG1539|consen 374 GQ-------------LHNKKRAK---------KVNVF----------------------S--------TEK----LKLPP 397 (910)
T ss_pred cc-------------cccccccc---------ccccc----------------------c--------hhh----hcCCc
Confidence 00 00000000 00000 0 000 01223
Q ss_pred eeEEEEecC-----CCEEEEE-cCCeEEEEEcCCcee-eEEec-----CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310 805 VPCFALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 805 v~~l~~s~d-----~~~l~~~-~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1103)
|..+++... ...++.. ++...+.|+...... ...+. .....+++++.++ .|++.+.|+..|.|.+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEE
Confidence 344443321 1222222 356788899876544 22222 2346899999999 999999999999999999
Q ss_pred cCCceeEEEe---ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 873 ARSSEVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 873 ~~~~~~~~~l---~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
+++|-....+ ..|.++|++++...-++.+++++.+|.++.||.+....... +.. ...+.++..+....
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~--l~l-------~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS--LRL-------GSSITGIVYHRVSD 547 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee--ecc-------CCCcceeeeeehhh
Confidence 9999988888 57999999999988889999999999999999998553221 111 12578888898888
Q ss_pred EEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCC
Q 001310 950 RFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSH 1028 (1103)
Q Consensus 950 ~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1103)
.+|++ .|-.|.++|+.+.+.++. +.+|+..|+.++|||||++|++++.|++|++||+.++.++..+...
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--------- 617 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--------- 617 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------
Confidence 88885 677899999998888887 7789999999999999999999999999999999999999776621
Q ss_pred CceeeEeeccCCceeeEEEEECCCCCcEEEEEecC-CcEEEEc
Q 001310 1029 DKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIE 1070 (1103)
Q Consensus 1029 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~vw~ 1070 (1103)
.-+.+++|+|+ |++|+++..| ..|++|.
T Consensus 618 -------------~~~~sls~SPn-gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 618 -------------SPCTSLSFSPN-GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -------------CcceeeEECCC-CCEEEEEEecCceEEEEE
Confidence 22568899999 9999999999 6899996
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-39 Score=305.03 Aligned_cols=298 Identities=19% Similarity=0.286 Sum_probs=254.8
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
..-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......- . ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~--~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------V--PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------c--eeeeeeccceEecceEEc
Confidence 45689999999999999999877999999999999999876422110 0 112288999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC-
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 484 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~- 484 (1103)
+||.+.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .+++|+.|++|++||+. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996554 6889999999999999999 69999999999999954 5555665444
Q ss_pred -CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999988899999999999999999999999999999999999999999999999875 6679999999
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-------CCCCceEEEecCCCE
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 636 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~ 636 (1103)
.++.+..+... ..|.+++|+|+...| ++..+..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998777653 589999999986554 444556699999999988877654321 233567899999999
Q ss_pred EEEEECCCeEEEEEcC
Q 001310 637 LAVIANENRIKILETP 652 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~ 652 (1103)
|+.|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-38 Score=325.87 Aligned_cols=481 Identities=17% Similarity=0.265 Sum_probs=360.3
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
.+++..|++.|.++.|+|... ++.++-..|.|.|||.++...++.+++ ...+|++..|-+
T Consensus 6 krk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfia 65 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIA 65 (794)
T ss_pred hhHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeee
Confidence 355667999999999999998 566677889999999999998876433 567999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeecCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 485 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~ 485 (1103)
-.+++++|+.|..|+||+..+++.++ .+..|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++++||.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 99999999999999999999998766 7889999999999999988 8999999999999999865 7789999999
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC--CEEEEEecCCCCceeEEEEeCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
..|.+++|+|. |...+++++.|++|++|.+....+..++.+|...|+|+.+-+-| .+|++++. |..+.+||.+
T Consensus 141 HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQ 215 (794)
T KOG0276|consen 141 HYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQ 215 (794)
T ss_pred eEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecc
Confidence 99999999986 55799999999999999999999999999999999999998844 68998875 7789999999
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 643 (1103)
+..+++++.||. ..|..+.|+|.-..+++|++||+++||+..+.+...++... ...+++++-.+.++.+++|.+.
T Consensus 216 tk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccC
Confidence 999999999999 89999999999999999999999999999998888887755 3468999999988899999998
Q ss_pred CeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccc
Q 001310 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1103)
Q Consensus 644 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~ 723 (1103)
|.|.+ .+....+...+. +.|+. +|-..
T Consensus 291 g~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~------- 317 (794)
T KOG0276|consen 291 GSVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH------- 317 (794)
T ss_pred CcEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC-------
Confidence 87654 232221111110 11111 11100
Q ss_pred eeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCC-CC
Q 001310 724 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN-SQ 802 (1103)
Q Consensus 724 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 802 (1103)
+.|..+.. -+.+.++ ++..|+.+. ...+..+ -.
T Consensus 318 -----------~ei~~~~~-------ks~~~~~---------------------------ev~DgErL~-LsvKeLgs~e 351 (794)
T KOG0276|consen 318 -----------SEIQAVNL-------KSVGAQK---------------------------EVTDGERLP-LSVKELGSVE 351 (794)
T ss_pred -----------ceeeeeec-------eeccCcc---------------------------cccCCcccc-chhhhccccc
Confidence 11111100 0000000 111222110 0000000 11
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
-....++-+|+|+++++++||.-.||..-..+ ....+......|++ |....|+-..++.|+++ ...+..+.+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi 423 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI 423 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence 12345788999999999999998888743222 12345667788999 77788888888999998 566655555
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iw 962 (1103)
...- + ...--.|.+|...+ ++.+++||-++++.... +.. ....+.|+.+|.+++++.|...+++
T Consensus 424 ~~~~--~--~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrr--I~v---------~~k~v~w~d~g~lVai~~d~Sfyil 487 (794)
T KOG0276|consen 424 RPDM--S--AEGIFGGPLLGVRS-SDFLCFYDWESGELVRR--IEV---------TSKHVYWSDNGELVAIAGDDSFYIL 487 (794)
T ss_pred cccc--c--eeeecCCceEEEEe-CCeEEEEEcccceEEEE--Eee---------ccceeEEecCCCEEEEEecCceeEE
Confidence 4211 1 11112355555555 45599999999775442 222 2347999999999999888776666
Q ss_pred ECC
Q 001310 963 EAE 965 (1103)
Q Consensus 963 d~~ 965 (1103)
...
T Consensus 488 ~~n 490 (794)
T KOG0276|consen 488 KFN 490 (794)
T ss_pred Eec
Confidence 554
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-39 Score=349.31 Aligned_cols=279 Identities=18% Similarity=0.259 Sum_probs=244.5
Q ss_pred cccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeee--------eeeeeEe----ecccccc
Q 001310 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVW----DIGACSM 385 (1103)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~--------~~~~~~~----~~~~~~~ 385 (1103)
....+|.-|..++..-...++|..||+|++ ++|.|..|..|++|.+...+... ......- |...-..
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 357788999999988888999999999998 89999999999999998533111 0000000 1111112
Q ss_pred ceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310 386 LFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 386 ~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
......+.||+++|..+.|+||.++|++|+.|++|++|.+.+..++. ...||..+|+++.|+|-|- ++||+|.|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~ 515 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ 515 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence 23344588999999999999999999999999999999999987665 6789999999999999998 899999999
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1103)
+.++|......+++.+.+|-+.|.|+.||| +..++++||.|.+||+||..++..+..+.+|..+|.+++|||+|++|+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 999999999999999999999999999987 557999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
+++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 594 Sg~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 594 SGDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9975 7779999999999999999997 999999999999999999999999999987543
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=302.38 Aligned_cols=295 Identities=17% Similarity=0.250 Sum_probs=268.1
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
...++|+||.+.|.++.|++|.+ .++++|.||.++|||.-|...++- ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 34489999999999999999998 589999999999999988876654 3336789999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCC--C-ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1103)
+|.|+++|+|+-|+...||++.+. + ..+....+.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 999999999999999999999865 2 2344457899999999999999886 999999999999999999999999
Q ss_pred ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1103)
.+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. ++..++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999875 7789999999999999999999999999999999999999999999999975 67799999
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 99999998888533 456899999999999999999999999999999999999998754 699999999999999999
Q ss_pred CCCeEEEEE
Q 001310 642 NENRIKILE 650 (1103)
Q Consensus 642 ~dg~i~iw~ 650 (1103)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=324.14 Aligned_cols=547 Identities=13% Similarity=0.149 Sum_probs=405.8
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 410 (1103)
..+.+.|+|++-..+-- ++|.| ..|.+|. .|+.+.. +..+|...|.-+.. =|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence 46788999999887753 34443 4566665 3433321 25567777776653 4889
Q ss_pred EEEEeCCCeEEEEEecCC-CccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 411 las~~~d~~i~iwd~~~~-~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
++++..++.+.||+..++ +.......+. .....|+++. +|..--..++.|+.+|.+.+|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999885 2211111222 2222377764 454321258889999999999999999999999999999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
+++.-+|.- ..++.|..+|+|.+++++..+....++...++|++++|..||..+.+.+. ..|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 999876544 58999999999999999999999999988899999999999998877654 2566999999998887
Q ss_pred EEEe-cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CC--eeEEEEcCCCCCCCCceEEEe-cCCCEEEEEEC
Q 001310 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1103)
Q Consensus 569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~ 642 (1103)
.... .|. +.+....|.|....+++++.|+.+++|=.+ +| +.++.-. +|..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence 7776 444 789999999999999999999999988554 34 2333333 345667899988 68999999999
Q ss_pred CCeEEEEEcCCCCeeEeccc------------------cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceee
Q 001310 643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1103)
Q Consensus 643 dg~i~iw~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1103)
|++++.+++.....-+.+.. .-.+|..+++.-... ....+.+..-
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE-----------------~~W~Nv~~~h 418 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE-----------------KEWDNVITAH 418 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh-----------------hhhcceeEEe
Confidence 99999888753211111100 011122122110000 1122333344
Q ss_pred ccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeec
Q 001310 705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784 (1103)
Q Consensus 705 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 784 (1103)
-.+...+.|+......++...-.-+.......+.+++.++.|++.+.|.+.|.|.+|+++.+-.
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------------- 482 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------------- 482 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------
Confidence 4556788899876555443332222223457789999999999999999999999988776421
Q ss_pred CCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 001310 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1103)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1103)
...+- ....|..+|+.++...-++.+++++ +|-+++||......+..+. -...++++..+. ...++|.+.
T Consensus 483 ------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ 553 (910)
T KOG1539|consen 483 ------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIAL 553 (910)
T ss_pred ------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhc
Confidence 11110 1124999999999999899999887 8999999999888777766 445778888887 677999999
Q ss_pred CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
.|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.+.....+. .+..++.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls 624 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLS 624 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeE
Confidence 9999999999999999999999999999999999999999999999999999998865533222 2578999
Q ss_pred EcCCCCEEEEE-eC-CeEEEEECC
Q 001310 944 FHKDQTRFLLV-HE-THLAIYEAE 965 (1103)
Q Consensus 944 fs~dg~~l~~~-~d-~~v~iwd~~ 965 (1103)
|||.|.+||++ .| ..|++|.-.
T Consensus 625 ~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 625 FSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ECCCCCEEEEEEecCceEEEEEch
Confidence 99999999996 34 569999754
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=294.56 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=265.8
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ ++++|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 388999999999999999999999999999999998875444 4556677899999999999 89999999999999
Q ss_pred eCCCC------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCE
Q 001310 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1103)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 543 (1103)
++.+. +..+.+.+|.+.+.++.|.. ...|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34567899999999999864 35899999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
+++++. +...++||++.+..++.|.+|+ ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 5569999999999999999999 999999999999999999999999999999999999998777777
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
+|++++||..|++|.+|..|..+.+||.-.++.+..+.+|.+.|.++.++ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999997 78888999
Q ss_pred ecccccccccc
Q 001310 704 VEAENKSEVEK 714 (1103)
Q Consensus 704 ~~~d~~i~~w~ 714 (1103)
|+.|..+|+|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=284.90 Aligned_cols=293 Identities=17% Similarity=0.279 Sum_probs=251.7
Q ss_pred CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEe
Q 001310 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 425 (1103)
Q Consensus 346 g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~ 425 (1103)
..-+|++++.|.+|++|...+|.+.++ +....+.|..+.+.||+++||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 335899999999999999999999987 333568999999999999999997665 999999
Q ss_pred cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE
Q 001310 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1103)
Q Consensus 426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1103)
.++..- +..++.+|...|+++.|..||+ .+++||.||+++|||++...+.+.++ |..+|+++.++| +..-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEee
Confidence 998753 5668999999999999999999 89999999999999999977777665 779999999977 44689999
Q ss_pred ECCCeEEEEEcCCCCeeEEe-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------eEEEEecccccC
Q 001310 506 SVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH 578 (1103)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~ 578 (1103)
..+|.|++||+.+......+ ......|.+++..|||.+++.+.. .|..++|++-++. ++.+++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 99999999999988665544 344568999999999999999865 6679999987643 345566666
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
+.+..+.++|++++|+++|.|.+++||+.++. +....+.++ ...+..++||.||++|++++.|+..++|++..++.+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 88999999999999999999999999999988 444444444 457899999999999999999999999999999999
Q ss_pred EeccccccceeeeEEe
Q 001310 658 DAAGVLSDNLRKLSVN 673 (1103)
Q Consensus 658 ~~~~~~~~~i~~~~~~ 673 (1103)
....+|.....|++..
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 9999998888777664
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-35 Score=315.96 Aligned_cols=582 Identities=16% Similarity=0.229 Sum_probs=401.1
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
++..+..|..++|+|... ++.++-..|.|.+||..-+.++.. +.+|.++|+.++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 345567999999999987 577888899999999999998876 778999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1103)
++++|+.|..|+||+.++.+++. ++.||.+.|..+.|++.-. +++|+|+|.+|+||++.+++++..++||...|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987766 7889999999999999877 899999999999999999999999999999999
Q ss_pred EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1103)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1103)
|..|+|+.| .++++|-|.+||+||+...+....-.+ ++.=...+..+. .-++--..--...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998764 899999999999999876443322211 000000111100 0011111122345
Q ss_pred EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1103)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 649 (1103)
.+.||. ..|+.++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|..+++++.+.|++|++|
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 677888 89999999999999999999999999999865544444444556789999999999999999999999999
Q ss_pred EcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCC-----CCCCccceeeccccccccccccccCCccce
Q 001310 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1103)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1103)
|+...+.++.++...+..+.++..|.....+.|-+.|.+.|.-+. .-.++.+...- |..|+.+|+.+.......
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence 999999999999999999999999999999999999988884331 12233343333 788899998875555555
Q ss_pred eeeccCccccccEEEEEEecCCcEEEEee--cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC
Q 001310 725 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 802 (1103)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1103)
.++.+.. ...+..++.++|....++.++ ..|...++.++......... ... -..
T Consensus 357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~------------~~~-----------~k~ 412 (1202)
T KOG0292|consen 357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG------------KDV-----------KKG 412 (1202)
T ss_pred eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc------------hhh-----------hcC
Confidence 4443332 346788999999877665553 34666666665432100000 000 011
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
....++-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+. ....|.++|+...+.+..+
T Consensus 413 tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si 487 (1202)
T KOG0292|consen 413 TGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSI 487 (1202)
T ss_pred CCCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEE
Confidence 222223233332222222234444444432 222333222 2333444444 5555543 3457999999988877777
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iw 962 (1103)
+ ...|.-+.||+|..++|--+. .+|.|.+.+-.- +...... -.|.+-+|..+|-+|.+..+.-= |
T Consensus 488 ~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~l------~~sihEt----iriksgawde~gVfiYtT~nHik--Y 552 (1202)
T KOG0292|consen 488 K--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLEL------LCSIHET----IRIKSGAWDEDGVFIYTTLNHIK--Y 552 (1202)
T ss_pred e--cCceeEEEEcCccchhhhccc-ceEEEEecchhh------eecchhe----eEeeeceeccCceEEEEehhhhh--h
Confidence 6 457889999999988877664 458888765411 1111111 14677888888888877543211 1
Q ss_pred ECCCce--EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 963 EAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 963 d~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
-+.+|. .+.+ + ..++.-.. -.|..++.-..|+.+.+.+++.
T Consensus 553 al~~GD~GIikT-L---d~~iyitk--v~gn~V~cl~rd~~~~~~~IDp 595 (1202)
T KOG0292|consen 553 ALENGDSGIIKT-L---DKPIYITK--VKGNKVFCLNRDGEIECLTIDP 595 (1202)
T ss_pred hhccCCcceEEe-c---ccceEEEE--eeCCEEEEEecCCCeEEEeech
Confidence 111111 1111 1 11222122 2466666667777777777764
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-35 Score=306.00 Aligned_cols=465 Identities=15% Similarity=0.219 Sum_probs=343.6
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+..|+.+|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44589999999999999999999999999999999987776 5666778999999998777 899999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEcc-CCCEEEEEec
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1103)
..|++.+..|..|.+.|++++.||.. .+++++|.|-+|++||++.. .+..++.+|.+-|.+++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998864 69999999999999999876 45678999999999999999 6778888887
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
|++|.+|.+.+..+..++.+|. ..|+++.+-+- .+++++|++|.+|+|||..+..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6679999999999999999998 89999999764 47999999999999999999999999998854 5999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
+.|+|.-..+++|+.||+++||+..+-+....+....+.++|++..
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~---------------------------------- 278 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAH---------------------------------- 278 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeec----------------------------------
Confidence 9999999999999999999999988776655555444445544444
Q ss_pred cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1103)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1103)
+.+..++.|..+|.+.+=
T Consensus 279 ------------------------------------k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 279 ------------------------------------KGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred ------------------------------------CCCCeEEEeccCCcEEEE--------------------------
Confidence 333334444444433320
Q ss_pred CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC--CeEEEE------EcCCceee----EEecCCCCCeeEEEEcCCC
Q 001310 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTI----LTIMPPSPTATSLAFNPHD 855 (1103)
Q Consensus 788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d--g~i~iw------d~~~~~~~----~~~~~~~~~i~~l~~s~~d 855 (1103)
.......+..++.|+.+-+... -.+.+- +++.|+.+ +.+-...-....++-+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0001112222333322222110 001111 22222221 11111112335678899 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1103)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1103)
|+++++++ ||.-.||..-..+ ..+.+.-....|++|.+..|+--.++.|+++ ++.+..+ .+..
T Consensus 363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k--si~~------- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK--SIRP------- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc--cccc-------
Confidence 88777665 8888888632211 1244566778999998888888888889988 4433222 1111
Q ss_pred CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
-..+.+--.|.+|.+..++.+++||.++++.++.+- -....+.|+.+|.+++.++.| ..++..+
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~----v~~k~v~w~d~g~lVai~~d~-Sfyil~~ 489 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIE----VTSKHVYWSDNGELVAIAGDD-SFYILKF 489 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEe----eccceeEEecCCCEEEEEecC-ceeEEEe
Confidence 111333345677777899999999999999998743 245678999999988887755 3455543
No 29
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.5e-35 Score=309.67 Aligned_cols=600 Identities=15% Similarity=0.188 Sum_probs=405.8
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCc-eEEEEEcCCCceEEEeCCCC--cee
Q 001310 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTG--SRT 478 (1103)
Q Consensus 402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~--~~~ 478 (1103)
.+|.| +..+|.| ....|.+||.... .....+.||..+|+|+.|-|+.+. ..+++|+.|+.|.+|.++.. .++
T Consensus 20 ~sw~~-~~~vafG-a~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i 94 (764)
T KOG1063|consen 20 SSWGP-GGLVAFG-AGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI 94 (764)
T ss_pred ccccc-cceEEec-CCceEEEeCcccc---eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence 34544 3345555 4567999998775 233478899999999999987651 15899999999999998843 345
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCc--cEEEEEEcc-CCCEEEEEecCCCC
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKEG 553 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~s~-dg~~l~~~~~~~~~ 553 (1103)
.++.+|...+.++.-.. ....+...|+++.+||.+..+. ...+....+ -..|+++.+ .+.++.+++.+
T Consensus 95 ~~~~g~~~~~~cv~a~~----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--- 167 (764)
T KOG1063|consen 95 YTIQGHCKECVCVVARS----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--- 167 (764)
T ss_pred EeecCcceeEEEEEeee----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence 67777776666553211 1223337899999999855441 112222222 234566666 45555555432
Q ss_pred ceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCe-----------------
Q 001310 554 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ----------------- 611 (1103)
Q Consensus 554 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~----------------- 611 (1103)
+..|.++.-... +.+..+.||. +.|.+++|...+. +++++|.|..||||.+.-+.
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 556777655433 5567788888 9999999986554 77889999999999764322
Q ss_pred ----eEEEEc--------CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC--eeEeccccccceeeeEEecCCc
Q 001310 612 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPIST 677 (1103)
Q Consensus 612 ----~~~~~~--------~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 677 (1103)
....+. ..+|..-|.++.|+|.+..|.+++.|.++.+|.-.+.. .+...+.....
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g----------- 313 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG----------- 313 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc-----------
Confidence 111111 11445679999999999999999999999999877552 22222211000
Q ss_pred eeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCce
Q 001310 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1103)
Q Consensus 678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 757 (1103)
|...| -+.+-.+|++..+++-+..|..++|. +.+.......... .+|.+.|..++|.|.|.++++.+.|.+
T Consensus 314 ----g~a~G--F~g~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 314 ----GSAGG--FWGGLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred ----ccccc--eeeEEEcCCCCEEEEecccCcEEEEe--ccCccceeecccc-ccccccceeeeecCCCCEEEEeccccc
Confidence 00000 11122257888899999999999998 2233333332222 479999999999999999999999998
Q ss_pred EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC-CeEEEEEcCC----
Q 001310 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---- 832 (1103)
Q Consensus 758 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-g~i~iwd~~~---- 832 (1103)
-+++---..+. -|.- +... +-|...++|+++-+....+++|.| ..+++|+...
T Consensus 385 TRlFa~wg~q~-------------~wHE-----iaRP----QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 385 TRLFARWGRQQ-------------EWHE-----IARP----QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred eeeeccccccc-------------ceee-----eccc----ccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence 88875221100 0211 1111 138888999999885555666654 5578887421
Q ss_pred ---------------------------------------cee---------------------------------eEEec
Q 001310 833 ---------------------------------------FKT---------------------------------ILTIM 840 (1103)
Q Consensus 833 ---------------------------------------~~~---------------------------------~~~~~ 840 (1103)
|.. ++.+.
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 000 01345
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001310 841 PPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 915 (1103)
Q Consensus 841 ~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~ 915 (1103)
+|...|.+++.+| +++++|+++.. ..|++|+..+...++.+.+|+-.|+.++|||||++|++++.|+++.+|+.
T Consensus 523 GHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 7888999999999 89999998754 48999999999989999999999999999999999999999999999998
Q ss_pred CCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc--eEEEE-eeCCCCcCeEEEEEcc---
Q 001310 916 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL--TCLKQ-WFPISSVPISQATFSC--- 988 (1103)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~--~~~~~-~~~~h~~~v~~l~fs~--- 988 (1103)
..+...... +...+.|. .-|.++.|+||+.++|++ .|.+|.+|..... +.+.. -...++.+|+++++.|
T Consensus 602 ~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 602 QEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred ecccchhhh-hccccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 764432221 22233443 368999999999999995 8999999999887 55444 2345689999999987
Q ss_pred -C-CCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCC---------CCcEE
Q 001310 989 -D-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPL---------KPTQF 1057 (1103)
Q Consensus 989 -d-g~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~---------~~~~l 1057 (1103)
+ +..+++|-+.|.|.+|....-....... ... ....+|...+|.+.|.. +.+.|- +...|
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~-~~~------~~~~l~~~~~~~~aV~r--l~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVG-TFN------LDTRLCATIGPDSAVNR--LLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccce-eee------eccccccccChHHhhhe--eEeccccccccccccceeEE
Confidence 2 2367888899999999976222111111 000 11223334456666764 444442 13467
Q ss_pred EEEecCCcEEEEccC
Q 001310 1058 AVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1058 ~~~~~dg~v~vw~~~ 1072 (1103)
++|++|..++++++.
T Consensus 749 a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 749 AVGGDDESVRIFNVD 763 (764)
T ss_pred eeecccceeEEeecc
Confidence 999999999999873
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-35 Score=280.42 Aligned_cols=296 Identities=16% Similarity=0.161 Sum_probs=247.6
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEE
Q 001310 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1103)
Q Consensus 731 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 809 (1103)
.+|.+.|..++..+. ...++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 569999999999887 456778888999999998764 2334433333 22 5999999999
Q ss_pred EecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-CCC
Q 001310 810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK 887 (1103)
Q Consensus 810 ~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 887 (1103)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|++|++........... |++
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999998 89999999999999999999999999999999 899999999999999999886544433333 388
Q ss_pred CEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEEC
Q 001310 888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEA 964 (1103)
Q Consensus 888 ~V~~l~~s~d--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~ 964 (1103)
.|.|+.|+|+ ..+++++|.|++|++||+.+.+ ....+.||.. .++.+++||||.+.+.| .||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 9999999998 7899999999999999999844 4556666665 89999999999999995 8999999999
Q ss_pred CCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee
Q 001310 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP 1044 (1103)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1044 (1103)
+.++.+.. .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+....-.+ . .-.+.+.|
T Consensus 222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s-----------~~~~~~~c 286 (315)
T KOG0279|consen 222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-S-----------SKAGDPIC 286 (315)
T ss_pred cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-c-----------cccCCcEE
Confidence 99999775 4578999999999998777765 46679999999999887666332211 1 12345778
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1045 HAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1045 ~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
++++|+++ |+.|.+|..|+.|++|.+.
T Consensus 287 lslaws~d-G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSAD-GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcCC-CcEEEeeecCCcEEEEEee
Confidence 99999998 9999999999999999984
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=297.68 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.0
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
+..+.|.+|...|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 55677889999999999999987 899999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
+..|++||+++.|-.+.+||..+. .+....+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.+++++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233446789999999999999998 8999999999999999999999999999
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC---------------CEEEEEec
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 549 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------------~~l~~~~~ 549 (1103)
...|..+.. ..||.++++++.|.++++|-+.++.+...+..|..+|.+++|.|.. .++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 6689999999999999999999999999999999999999997742 46666655
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
|+.|++||+.++.++.++.+|. +.|..++|+|.|++|+++.+|+++++||+.+++++..+..|.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999999 9999999999999999999999999999999999999998765 489999
Q ss_pred EecCCCEEEEEECCCeEEEEEc
Q 001310 630 FNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
|+.+..++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999963
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=277.38 Aligned_cols=538 Identities=12% Similarity=0.164 Sum_probs=386.0
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
-+-+.-++|+. -=..+-+-|.|..+...+ +.+.+++++...+.+ +.||+..|.|++
T Consensus 56 LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~ 111 (626)
T KOG2106|consen 56 LEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMA 111 (626)
T ss_pred eEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEe
Confidence 34445566664 334556778887433333 456777876533322 779999999999
Q ss_pred ECCCCCEEEEEeCCC--------eEEEEEecCCCccccceEeccccccEEEEEEecCC--CceEEEEEcCCCceEEEeCC
Q 001310 404 WSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAV 473 (1103)
Q Consensus 404 ~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~--~~~~l~s~~~d~~i~iwd~~ 473 (1103)
.+||.-.+|+|-..| .++|||..+-..+. .+......|+|++|++-+ ..+..+--+.+..+.|||..
T Consensus 112 vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq 188 (626)
T KOG2106|consen 112 VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ 188 (626)
T ss_pred ecCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhch
Confidence 999999999874444 49999977644333 566667789999999853 32233334566789999999
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE---ecC-CCccEEEEEEccCCCEEEEEec
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
.+......+.....|....|+|... .++++ ...|.+.+|+++.+..... +.. ....|.|++|.++|..+-.
T Consensus 189 k~~~~~~vk~sne~v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg--- 263 (626)
T KOG2106|consen 189 KKAKLGPVKTSNEVVFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG--- 263 (626)
T ss_pred hhhccCcceeccceEEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee---
Confidence 9998888888888899999998743 44444 4568899999988765442 222 2257999999999987643
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
|.++.|.||+..+.+..+....|. +.|.+++.-.+|. |++|+.|..|..|| ..-+.++....+.....+..++
T Consensus 264 --DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 264 --DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred --cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEe
Confidence 447789999998888777777666 9999999998885 56699999999999 5555566665555555566555
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1103)
-...+ |++|+..+.|..=.++++-.+
T Consensus 337 e~~~d--i~vGTtrN~iL~Gt~~~~f~~---------------------------------------------------- 362 (626)
T KOG2106|consen 337 EGKGD--ILVGTTRNFILQGTLENGFTL---------------------------------------------------- 362 (626)
T ss_pred cCCCc--EEEeeccceEEEeeecCCceE----------------------------------------------------
Confidence 43322 677766665544333322111
Q ss_pred cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCC
Q 001310 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789 (1103)
Q Consensus 710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1103)
...+|......++..|+...+++++.|+.+++|+ ..+ ..|...
T Consensus 363 -------------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~--- 405 (626)
T KOG2106|consen 363 -------------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI--- 405 (626)
T ss_pred -------------------EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE---
Confidence 0123666777888899999999999999999998 211 123211
Q ss_pred ceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeE
Q 001310 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1103)
Q Consensus 790 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1103)
...+..|+.|.|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|
T Consensus 406 -----------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 406 -----------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHI 471 (626)
T ss_pred -----------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeE
Confidence 45678899999999 888887 6999999999855554444 488999999999 99999999999999
Q ss_pred EEEEcCCc-eeEEEec-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeee-e-----------eeecCCCccc
Q 001310 869 LIYNARSS-EVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC-R-----------SLQTPDGVMT 934 (1103)
Q Consensus 869 ~iwd~~~~-~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~-~-----------~~~~~~~~~~ 934 (1103)
+||.+... ....... .|..+|+.+.||+|+++|.+-+.|-.|..|....-+.... + -+....+ .
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s 549 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--S 549 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--c
Confidence 99998764 3333332 2448999999999999999999999999994333221110 0 0011111 1
Q ss_pred CCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc--eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 935 LAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 935 ~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
....+..++-|.+.+++|++ ..|+|++|...-. +.....+.+|++-|++++|+.+...|++.+.|.+|..|++
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 11245667778888899998 5689999987633 3333446789999999999999999998889999999986
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=287.76 Aligned_cols=298 Identities=18% Similarity=0.256 Sum_probs=268.6
Q ss_pred cCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
+..|-.+.+.+.+|.+.|.|+++.|-.+ ++++|+.|++++|||+.+|++..+ +.||-..|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v 196 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV 196 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence 4556788899999999999999999987 799999999999999999998876 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+.
T Consensus 197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence 999999999999999999999999999998777 6779999999999999888 89999999999999999999999
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|..
T Consensus 272 ~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~ 344 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQ 344 (460)
T ss_pred EecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----ccee
Confidence 99999999999988654 3579999999999999999999999999999999999999999999998753 3999
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc---CCC---CCCCCceEEEecC
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKN 633 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~ 633 (1103)
|++..|..+..+.+|. ..+++++.+.|+ ++++|+++|.+.+||.++|-..+... .++ ....|.+.+|...
T Consensus 345 w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 345 WKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred ccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 9999999999988888 899999998775 78999999999999999886655442 221 2245788999999
Q ss_pred CCEEEEEECCCeEEEEEcCC
Q 001310 634 GTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 634 g~~l~~~~~dg~i~iw~~~~ 653 (1103)
|..|+++..|.+|++|.-..
T Consensus 421 g~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred CceEEeccCCcceEEEeccc
Confidence 99999999999999997654
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=284.95 Aligned_cols=336 Identities=15% Similarity=0.187 Sum_probs=290.6
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
...+.++..|++.|.+++.+|+.+ ++|+|+.|....||+..+|+.... +.+|+..|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345688999999999999999776 899999999999999999997655 889999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
||.||.+||+|+-+|.|.||+..++.... .+..-...|.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999986544 4555667899999999888 899999999999999999888899999
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-CccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
|..++++=.|.| +|+.++++..||+|++|+..++.....+... .....++.++.++..++.|.. ++.+++-+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999955 6899999999999999999999988877643 446778899999999998865 556888888
Q ss_pred CCCeeEEEEec--------ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310 563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1103)
Q Consensus 563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 634 (1103)
.+|+.+....+ +......|..+.++..-+..++|+-||+|.|||+...+........ ..|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence 88888777663 2322344555666666778899999999999999987777766554 3489999998 7
Q ss_pred CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccc
Q 001310 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~ 714 (1103)
.+|++++.+|.|+.||..++++.....+|...|.+++++ |+++++++++.|++.++++
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999997 7889999999999999887
Q ss_pred cc
Q 001310 715 PL 716 (1103)
Q Consensus 715 ~~ 716 (1103)
..
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 53
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-34 Score=280.66 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=287.5
Q ss_pred EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEE
Q 001310 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1103)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1103)
.+..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.|+ .+|.+|++|+.+|.|+||.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6789999999999999777 89999999999999999999999999999999999995 4789999999999999999
Q ss_pred cCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1103)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1103)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+++++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999988877888999999999999999876 6669999999988889999988 89999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecC
Q 001310 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1103)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~ 675 (1103)
+..||+|++|+..+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876554 4568899999999999999999888877665543322110
Q ss_pred CceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC
Q 001310 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1103)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1103)
.+..+-....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCce
Q 001310 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 834 (1103)
Q Consensus 756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~ 834 (1103)
.....|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0223344445555666777887 8999999998776
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1103)
Q Consensus 835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd 914 (1103)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 655554 888899999986 46899999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 001310 915 VD 916 (1103)
Q Consensus 915 ~~ 916 (1103)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.7e-34 Score=263.61 Aligned_cols=295 Identities=17% Similarity=0.259 Sum_probs=252.2
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEeccccc
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1103)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||++++. ++..+.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 5799999999999999999999999999999999999999999999987 4569999999875 588899988
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
..|.++.|..+|+++++||+||+++|||++...+.+.+... .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999997666666543 67999999999999999999999999999876333
Q ss_pred EeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccE
Q 001310 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737 (1103)
Q Consensus 658 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 737 (1103)
..+- | .....|
T Consensus 160 ~~li-------------------------------------------------------------------P--e~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------P--EDDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------C--CCCcce
Confidence 2221 1 123568
Q ss_pred EEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEE
Q 001310 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 817 (1103)
Q Consensus 738 ~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l 817 (1103)
.++++.|||..++++...|..++|++...... ..+. ...++ ..|...+....+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l~-------P~~k~--~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SELE-------PVHKF--QAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccce-------Ehhhe--ecccceEEEEEECCCCcEE
Confidence 89999999999999999999999998663210 0000 11111 2589999999999999999
Q ss_pred EEEc-CCeEEEEEcCCc-eeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEc
Q 001310 818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1103)
Q Consensus 818 ~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1103)
|+++ |.+++||+.++. +.-..+.+|...+...+||. |++||++|+.|+.+++|++..++.+....+|.....|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9997 899999999987 66677889999999999999 99999999999999999999999999999998888887764
No 37
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=273.27 Aligned_cols=524 Identities=13% Similarity=0.168 Sum_probs=376.0
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--------ceEEEeC
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 472 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--------~i~iwd~ 472 (1103)
.+-+-|.|..+... .+.+.+++++... +..+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfv--A~V~Vl~n~ee~~----Qr~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV--AAVGVLYNWEERS----QRHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEe--ccEEEEEeehhhh----cccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 35677888776554 3346677776532 124679999999999999865 566554333 5999999
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEE--ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
.+-..++.+......|.+++|++.+.|.++... +.+..+.+||+..+............+....|.|.+..++....
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888888889999999998888777765 34566899999988877777777778889999996655544432
Q ss_pred CCCceeEEEEeCCCCeeEEE---EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 551 KEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
.+.++.|+.+.+...+. +..++ +..|.+++|.++|. +++|..+|.|.||+..+.+..+....| ...|.+
T Consensus 221 ---k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~ 292 (626)
T KOG2106|consen 221 ---KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFS 292 (626)
T ss_pred ---CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEE
Confidence 67799999998876554 44444 46799999999875 789999999999999888777766655 446899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
++.-.+|.+|- |+.|..|..|| ..-+.++..+.
T Consensus 293 L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~el--------------------------------------------- 325 (626)
T KOG2106|consen 293 LCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETEL--------------------------------------------- 325 (626)
T ss_pred EEEecCccEee-cCccceEEecc-ccccccccccC---------------------------------------------
Confidence 99999997666 99999999999 22222221111
Q ss_pred cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1103)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1103)
|. ..+.|+.++-.. .-++.+...+.|..=.++ .
T Consensus 326 ---------------------Pe--~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~----------------------~ 358 (626)
T KOG2106|consen 326 ---------------------PE--QFGPIRTVAEGK--GDILVGTTRNFILQGTLE----------------------N 358 (626)
T ss_pred ---------------------ch--hcCCeeEEecCC--CcEEEeeccceEEEeeec----------------------C
Confidence 00 122333332211 114444444333321111 1
Q ss_pred CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001310 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1103)
Q Consensus 788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1103)
+..+. ..+|......++..|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .| .+|.|+..|
T Consensus 359 ~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G 428 (626)
T KOG2106|consen 359 GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATG 428 (626)
T ss_pred CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccc
Confidence 11111 125778888999999998888887 89999999 444444433 456889999999 77 999999999
Q ss_pred eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC
Q 001310 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1103)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 946 (1103)
...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.++.+...-. .+....+ .+|+.+.||+
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS~ 501 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWSS 501 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeecC
Confidence 999999999666555444 88999999999999999999999999999987553322 2222222 3799999999
Q ss_pred CCCEEEE-EeCCeEEEEECCCceEEE-----------------EeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 947 DQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 947 dg~~l~~-~~d~~v~iwd~~~~~~~~-----------------~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
|+++|.+ +.|-.|..|.......+. .+...|+..|..++-|.+.+++|+|.+.|.|++|...
T Consensus 502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 9999999 678889999443221111 1123457777788888899999999999999999886
Q ss_pred CceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1009 NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
--...+.+- .-.+|++.|.++ +|.-. ...+++.+.|.+|..|++
T Consensus 582 c~s~rA~~h----------------e~~ghs~~vt~V--~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 582 CSSPRAPSH----------------EYGGHSSHVTNV--AFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCCCcccce----------------eeccccceeEEE--EEeeC-CceEEecCCCceEEEEEe
Confidence 554443332 112688888754 45444 456666669999999987
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=264.53 Aligned_cols=292 Identities=22% Similarity=0.339 Sum_probs=240.2
Q ss_pred eeEecccCCcCceEEEecCC-CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..+++++|++.|+.++|+|- |. +||+|+.|..|+||+...+.-... +..+-.+|+..|+++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 45789999999999999998 86 899999999999999985432211 12234579999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC---ceeEEe
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 481 (1103)
+|.|++||+++.|.++.||.-..++ +.....+.||...|.|++|+++|. +||+++.|+.|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999887654 555668999999999999999999 8999999999999998754 467888
Q ss_pred ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC---CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
+.|...|..+.|||+.+ +|++++.|++|++|+-... .+..++.++...+.+++|++.|..|++++. ++++.
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998764 9999999999999987632 357788899999999999999999999975 66799
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------eEEEEcCCCCCCCCceEEEec
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
||-..+ .+.+. |...+..+.|. ...|++++.|+.|++|.-...- .+.. ..+.+...|+++.|+|
T Consensus 221 Iw~~~~-----~~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYT-----DLSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeecc-----Ccchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcC
Confidence 997542 22221 24788999998 4579999999999999765421 1111 1122344799999999
Q ss_pred C-CCEEEEEECCCeEEEEEcC
Q 001310 633 N-GTLLAVIANENRIKILETP 652 (1103)
Q Consensus 633 ~-g~~l~~~~~dg~i~iw~~~ 652 (1103)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-33 Score=285.26 Aligned_cols=280 Identities=20% Similarity=0.318 Sum_probs=253.0
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
...|++++|+.+|. +||+|+.||.++||+.. |.++.+ +..|+++|.++.|+.+|.||++
T Consensus 235 nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~t-------------------l~~HkgPI~slKWnk~G~yilS 293 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIST-------------------LGQHKGPIFSLKWNKKGTYILS 293 (524)
T ss_pred cCCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhh-------------------hhccCCceEEEEEcCCCCEEEe
Confidence 35899999999998 89999999999999965 555544 7779999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1103)
++.|+++.+||..+|+..+ .+.-|..+-..+.|-.+.. +++++.|+.|+|+-+....++.++.+|.++|.++.|
T Consensus 294 ~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred ccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 9999999999999987655 4566888777889987775 999999999999999999999999999999999999
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC---------EEEEEecCCCCceeEEEEeCCC
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESE 564 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~---------~l~~~~~~~~~~~~i~iwd~~~ 564 (1103)
.| .+.+|++++.|+++++|..........+..|...|..+.|+|.|. .+++++. +++|++||+..
T Consensus 368 n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~ 441 (524)
T KOG0273|consen 368 NP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVES 441 (524)
T ss_pred CC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccC
Confidence 65 568999999999999999999889999999999999999999653 5677765 77899999999
Q ss_pred CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 644 (1103)
+.++..|..|. .+|.+++|+|++.++++|+.||.|.+|+..+++..+.....+. |..++|+.+|..+..+..|+
T Consensus 442 gv~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 442 GVPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCC
Confidence 99999999988 9999999999999999999999999999999999999976543 89999999999999999999
Q ss_pred eEEEEEcC
Q 001310 645 RIKILETP 652 (1103)
Q Consensus 645 ~i~iw~~~ 652 (1103)
.+.+.|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99998864
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-32 Score=291.55 Aligned_cols=498 Identities=16% Similarity=0.205 Sum_probs=355.0
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+...+.+|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|..++|+|.+. +++|||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34467889999999999999999999999999999988776 6889999999999999998 999999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
..+.+|+.++.||-+.|+.+.||+. -.+|+++|.|.+|+||++.+.+++..+.+|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999864 479999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE---EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1103)
|.+|++||+..-+....-.+.- ...+ .+... +.|+.|-. ....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~DaV----------VK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDAV----------VKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCee----------eeeeeccc--ccccceE
Confidence 6679999986533222111100 0011 11111 12222222 22344544 4569999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCC--eeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1103)
Q Consensus 629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1103)
+|+|.-.++++|++|..|++|.+...+ .+.+.++|.+.|.++-|. |..+++++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999998664 456789999999999997 66788999999
Q ss_pred ccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCC
Q 001310 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 786 (1103)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1103)
|+++|+||+......+++.- ..++...++..|..+.++++...| +.+|.+..
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDsG-m~VFkleR--------------------- 322 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLER--------------------- 322 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCCc-eEEEEEcc---------------------
Confidence 99999999987665555432 457788899999999666555554 45555432
Q ss_pred CCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee--eEEecCC---CCCeeEEEEcCCCCCEEEE
Q 001310 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI 861 (1103)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las 861 (1103)
..+. .++ ++..|....+..|+-+|+.+.+. +..++.. ..+..++.++|..+..|++
T Consensus 323 ---------------Erpa--~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 323 ---------------ERPA--YAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ---------------cCce--EEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 1222 222 34455555688999999987543 3334433 3678999999955555554
Q ss_pred EeC-CCeEEEEEcCCceeE----EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310 862 GMD-DSTILIYNARSSEVI----SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1103)
Q Consensus 862 g~~-dg~v~iwd~~~~~~~----~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1103)
... .|.-.++.+...... .... ......++ |-...++.+---.+..+.+-++.+....+ +..+.
T Consensus 384 s~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtkk---l~~~~------ 452 (1202)
T KOG0292|consen 384 SNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTKK---LLLPE------ 452 (1202)
T ss_pred eccCCCeEEEEEecCcccccCCchhhh-cCCCCceE-EEEecceEEEEecCcceEEecccchhhhc---ccCcc------
Confidence 443 345555555432110 0000 11122222 22222333322335566666666533111 22221
Q ss_pred CCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 937 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 937 ~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
....+-+..+|.+|+. +...|.+||+.....+.++. -..|..+.||+|..+++--+ ..+|.|.+-
T Consensus 453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~-Kh~i~i~~k 517 (1202)
T KOG0292|consen 453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLS-KHTITIADK 517 (1202)
T ss_pred -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhcc-cceEEEEec
Confidence 2445666666766554 45679999999888887754 45788899999998877554 356777664
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=269.86 Aligned_cols=291 Identities=18% Similarity=0.236 Sum_probs=251.9
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
..|.+|+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 45789999999999999998 79999999999999975432211 127799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
+..|++++.|.+|+.||+++|++.+ .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998776 67899999999985555665 78999999999999999999888875 4567
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 564 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--- 564 (1103)
++++.|. ..+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+. +..+++||++.
T Consensus 177 ltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 8888884 45678999999999999999999999999999999999999999999998876 77899999874
Q ss_pred -CeeEEEEecccc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 565 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 565 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
.+++..+.++.. .......++|+|+++.+-+|+.|..+++||......+..+++|. ..|+++.|+|...++.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 345788887651 12345678999999999999999999999999989999998774 46999999999999999999
Q ss_pred CCeEEEEE
Q 001310 643 ENRIKILE 650 (1103)
Q Consensus 643 dg~i~iw~ 650 (1103)
|.+|.+=+
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99988743
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=260.79 Aligned_cols=292 Identities=15% Similarity=0.224 Sum_probs=254.1
Q ss_pred CCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1103)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1103)
.+|...+++|..|.++|.++.|+-||+ +..+++.|.+|++||...|.++++ +.+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 457778899999999999999999999 577788899999999999999987 789999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC--cee
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRT 478 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~ 478 (1103)
.++.+.|...+++|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++. +++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998777 7899999999999999998 9999999999999998754 678
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
+.+......|.++.+ .+..|++|+.||+++.||++.++....+ .+.+|++++|++|++..++++. +..++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888899999987 4468999999999999999887665444 4568999999999999998876 66799
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
+.|-.+|++++.+++|......+ .++++....++++|++||.|++||+.....+..+..+.. ..+..++++|.-..++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 99999999999999998333333 445677778999999999999999999999998887654 4578999999887777
Q ss_pred EEECCCeEEEEE
Q 001310 639 VIANENRIKILE 650 (1103)
Q Consensus 639 ~~~~dg~i~iw~ 650 (1103)
++...+ +..|.
T Consensus 287 ~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 287 TATGHG-DLFWY 297 (307)
T ss_pred EecCCc-eecee
Confidence 777644 55554
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.8e-30 Score=271.22 Aligned_cols=502 Identities=12% Similarity=0.130 Sum_probs=368.5
Q ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
...|+++|||.+.+.||.+-.+|.|.||++..+-... ..+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 4689999999999999999999999999999864333 245555 45799999997665 99999999999999999
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE--EecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
++.++.+....+.|++++.++.. ..++.|+.||.+..++...+.... .+....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997754 689999999977777776666554 33445578999999999999999976
Q ss_pred CceeEEEEeCCCCeeEEEEe----cccc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 553 GESFLVEWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
++.|++||..++..+.... +... ...-|.++.|-.+ ..+++|...|+|.+||...+.+++.+..+. ..|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--cceeE
Confidence 7789999999998776222 1110 1235778877755 579999999999999999999999988774 46999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
++..+++.++++++.|+.|..+...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988877654220
Q ss_pred cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1103)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1103)
|-.. .....|...|++++..++ .+++++.|..+.+-.....+ ..+-
T Consensus 281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h-- 326 (691)
T KOG2048|consen 281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH-- 326 (691)
T ss_pred -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh--
Confidence 1000 011237777888888877 68888888877763322100 0000
Q ss_pred CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee---------eEEecCCCCCeeEEEEcCCCCCE
Q 001310 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNV 858 (1103)
Q Consensus 788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~ 858 (1103)
.+.... ... .-+...|..++++.-.+..+.+|.+.+... .+-.......|.+.+.|| +|++
T Consensus 327 ---~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 327 ---RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred ---hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 000000 011 123445666666666788888998865521 122233556899999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCceeEEE-----eccCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCceeeeeeeecCCCc
Q 001310 859 IAIGMDDSTILIYNARSSEVISK-----LEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1103)
Q Consensus 859 lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1103)
++.+. -..++||.+.....+.. .....-.+..+.|+-|+..++.++ .+..+.+.++++........++.. ..
T Consensus 397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~ 474 (691)
T KOG2048|consen 397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK 474 (691)
T ss_pred EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence 99876 34688888875322221 222334577889999998888888 677888888887554332222222 11
Q ss_pred ccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCc
Q 001310 933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 933 ~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
...|..++.||||++||+ +..+.|.+|++++++.-.... .-...|+.++|+| +-..|+.+..|+.|.-||++..
T Consensus 475 ---~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 475 ---CPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred ---CCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 147999999999999999 589999999999887655422 2358999999995 5567888999999999999654
Q ss_pred e
Q 001310 1011 E 1011 (1103)
Q Consensus 1011 ~ 1011 (1103)
+
T Consensus 551 ~ 551 (691)
T KOG2048|consen 551 N 551 (691)
T ss_pred h
Confidence 4
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.6e-33 Score=264.99 Aligned_cols=287 Identities=18% Similarity=0.297 Sum_probs=249.9
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 378999999999999999999999999999999976543 34447889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
|+++|++++.+++|...|+++... ..+-.++.+++.||++++||++......++.. ..+++++.|..++..+++++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence 999999999999999999999843 23446788999999999999998777665542 347899999999999999987
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCCCC--C
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLP--E 624 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~ 624 (1103)
++.|.+||++.+.....+.||. +.|+.+..+++|.++++-+.|.++++||++.. .++..+.++.+.. .
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 4459999999999999999999 99999999999999999999999999998753 4467776654432 2
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceee
Q 001310 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1103)
Q Consensus 625 v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1103)
...++|+|+++.+..|+.|..+++||......+..+.+|...|.+++|.| ....+.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence 45789999999999999999999999999999999999999999999984 55566777
Q ss_pred cccccccc
Q 001310 705 EAENKSEV 712 (1103)
Q Consensus 705 ~~d~~i~~ 712 (1103)
+.|++|.+
T Consensus 327 ~sdk~i~l 334 (338)
T KOG0265|consen 327 SSDKTIYL 334 (338)
T ss_pred ccCceeEe
Confidence 77777655
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=275.79 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=263.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
.++ -++++.+.+|...|.+++|.|.+ .+|++++.|.+|+.|+++++-+..++.+|...+..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999998764 69999999999999999999999999999999999999999999999976
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~ 615 (1103)
+.++++|-..++++...++.|+ .+|.+++|.|. +.++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6779999999999999999988 89999999763 25888999999999999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCC
Q 001310 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1103)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1103)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.++++...+..|..-++++.|.
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 998854 69999999999999999999999999999999999999999999999887
Q ss_pred CCCccceeecccccccccc
Q 001310 696 EDVKPEISVEAENKSEVEK 714 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~ 714 (1103)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3445889999999999996
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=311.67 Aligned_cols=294 Identities=21% Similarity=0.349 Sum_probs=256.6
Q ss_pred eEecccC-CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC--eeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
.+++.+| ...|.++.|||||+ .+++++.|+.+++|+..+++ .+.. +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666665 78999999999999 59999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEe-cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+.+++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCc--cEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
+|.+.|.+++| .+++.+|++++.|+.|++||+.++.. ...+..+.. +++++.|+|+++++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 45778999999999999999999883 455554444 5999999999999999986 66799
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..|. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999988222245555667889999999999999999999999999988875 45688999999999999
Q ss_pred EEE--CCCeEEEEEcC
Q 001310 639 VIA--NENRIKILETP 652 (1103)
Q Consensus 639 ~~~--~dg~i~iw~~~ 652 (1103)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.7e-34 Score=284.08 Aligned_cols=284 Identities=21% Similarity=0.320 Sum_probs=248.3
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+- .| ..++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCEEE
Confidence 3458999999999996 789999999999996321 11 124778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
+|+.+|.|++|+..-.. ++ .+.+ |...|.+++|+|+.. .+++++.||+|+|||....+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987643 22 2344 558999999999888 79999999999999999999989999999999999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
.|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+..+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999875 59999999999999999999999999999999999999999999999986 667999999999999999
Q ss_pred ecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310 572 QGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
++|. ..+.++.|+|-.. .|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.
T Consensus 303 r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 RGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeec
Confidence 9988 8999999999754 556699999999999986666655543 3445799999999999999999999999997
Q ss_pred cC
Q 001310 651 TP 652 (1103)
Q Consensus 651 ~~ 652 (1103)
-.
T Consensus 379 r~ 380 (464)
T KOG0284|consen 379 RN 380 (464)
T ss_pred cC
Confidence 54
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=278.41 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=252.7
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
++..|+..|.-+.||++|+|||+++.|.+..+|.+.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3778999999999999999999999999999999987777777778999999999999999999 89999999999999
Q ss_pred eCCCCceeEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
|+.+|.+...+. ++...+.+++|.| ||..+++|+.|+++..||++......--......|.+++.++||+++++...
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 999999987774 4568899999955 7789999999999999999865432222223356899999999999999875
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
+..|++++..+.........+ .+|++++.+.+++++++.-.+..+.+||++....+..+.+|.....+..-+
T Consensus 375 ----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 375 ----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 556999998876655444443 589999999999999999999999999999888888888876655555666
Q ss_pred Eec-CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310 630 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1103)
Q Consensus 630 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1103)
|.- +..++++|++|+.|+||+..+++++..+.+|...+++++++| .+...+|++++||
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDg 505 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDG 505 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCC
Confidence 664 558999999999999999999999999999999999999996 4677799999999
Q ss_pred cccccccc
Q 001310 709 KSEVEKPL 716 (1103)
Q Consensus 709 ~i~~w~~~ 716 (1103)
+||+|...
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999865
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=267.72 Aligned_cols=295 Identities=15% Similarity=0.238 Sum_probs=258.6
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478999999999999999999999999999999999996444 7899999999999999877 89999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++......+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998865 48999999999999999999999999999999999999998889999976
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
|.+|++||+..|+....+..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+.++. ..+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeee
Confidence 6679999999999998888887 899999999999888888876 58999999999998887664 45889998
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1103)
Q Consensus 631 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1103)
+.|| ++++|+++|.+.+||..++..++....... | |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq--------p-----------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ--------P-----------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCccccccccccc--------C-----------------------------Cc-----
Confidence 8877 888999999999999998865544321000 0 00
Q ss_pred ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~ 765 (1103)
......|.+.+|...|.+|+++..|.+|++|.-+.
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 01345688899999999999999999999998443
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-28 Score=261.90 Aligned_cols=551 Identities=16% Similarity=0.167 Sum_probs=376.8
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeecc-CCCccEEEEEECCCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDG 408 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg 408 (1103)
..--..+|.++|||.+.+ .||.+-.||.|.||++..+-... ..+. +....|.+++|+ +|
T Consensus 21 ~d~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~ 80 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EG 80 (691)
T ss_pred EeeeccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cC
Confidence 334456999999999998 58999999999999998754332 1233 445789999999 56
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE--EeecCCC
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGA 486 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~ 486 (1103)
..|.+.+.+|+|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+..++...++..+ .+....+
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred CeEEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 677788899999999999986554 6677788999999999998 78999999988888888777664 3445568
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-----C---CCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
.|.++.|++ ++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .+++| |..|.|.
T Consensus 156 RvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~ 228 (691)
T KOG2048|consen 156 RVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVT 228 (691)
T ss_pred eEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEE
Confidence 899998854 66789999999999999999888766221 1 22246778877665 45554 4477899
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCCCCCCCceEEEecCCCE
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTL 636 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~g~~ 636 (1103)
.||...+.+++.+..|. ..|.+++..++++++++++.|+.|.-+...++.. +.......+...+.+++..++ .
T Consensus 229 FWd~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~ 303 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A 303 (691)
T ss_pred EEcccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence 99999999999998888 8999999999999999999999999998776543 222222223346889998876 8
Q ss_pred EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
+++|+.|.++.+-....-+... |... ...|.+..... ...+++..--.+..+.+|.+.
T Consensus 304 l~sgG~d~~l~i~~s~~~~~~~----h~~~----~~~p~~~~v~~--------------a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSREFKNMD----HRQK----NLFPASDRVSV--------------APENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred EEecceeeEEEEccccccCchh----hhcc----ccccccceeec--------------CccceEEEEeccccccceecc
Confidence 9999999988876554321111 1100 00011111100 111222233334556666655
Q ss_pred ccCCc------cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc
Q 001310 717 FARPS------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1103)
Q Consensus 717 ~~~~~------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1103)
..... ....+. ......|.+.+.||+|+.++.+.-. ..++|.++.... +++-...
T Consensus 362 S~~~~g~~~~~~Llkl~---~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~-----------vk~~~v~---- 422 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLF---TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN-----------VKVINVD---- 422 (691)
T ss_pred CcccccccChhhheeee---cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc-----------eeEEEec----
Confidence 43111 111111 1235678999999999977766544 677777765321 1111111
Q ss_pred eeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCc--eeeEEec--CCCCCeeEEEEcCCCCCEEEEEeC
Q 001310 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF--KTILTIM--PPSPTATSLAFNPHDNNVIAIGMD 864 (1103)
Q Consensus 791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~--~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~ 864 (1103)
+.+ ...-....+.|+-|+..++.++ ...+.+++..+. +.+..+. +....|..++.|| +|+++|+.+.
T Consensus 423 ----~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t 495 (691)
T KOG2048|consen 423 ----DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIST 495 (691)
T ss_pred ----cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEec
Confidence 111 1334667788998888777776 467888877654 3333332 2346899999999 9999999999
Q ss_pred CCeEEEEEcCCceeEEEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeee---cCCCcccCCCCce
Q 001310 865 DSTILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ---TPDGVMTLAPSET 940 (1103)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~v~ 940 (1103)
+|.|.+|++.+.+.......-...|++++|+| +.+.|+.+..++.+.-+|++..+........ .+.........+.
T Consensus 496 ~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~ 575 (691)
T KOG2048|consen 496 RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIP 575 (691)
T ss_pred cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCc
Confidence 99999999998875544434457899999995 5688999999999999999553322211111 1111111224688
Q ss_pred EEEEcCCCCEEEEE-eCCeEEEEECC
Q 001310 941 HIQFHKDQTRFLLV-HETHLAIYEAE 965 (1103)
Q Consensus 941 ~l~fs~dg~~l~~~-~d~~v~iwd~~ 965 (1103)
.+.|+|........ ..+-+.+.|..
T Consensus 576 gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 576 GISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred eEEeCCCCccEEEEEcCcEEEEEecC
Confidence 89998877665554 33445555543
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.9e-33 Score=300.87 Aligned_cols=264 Identities=14% Similarity=0.197 Sum_probs=230.9
Q ss_pred ccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccc---------ccccccccCCeeecCCCCCceeeccCCCCCCCC
Q 001310 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL---------STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1103)
....+.|..|++|+..++.|..|..|++|.+...++.+ .....+.......|...+..... + .+|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCC
Confidence 34678999999999999999999999999998644211 11111222234455444442332 2 36999
Q ss_pred CeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
+|....|+|+.++|++++ |+++++|.+.+..++..+.+|..+|..+.|+| -|.++|+++.|++.++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 69999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEE
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI 961 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~i 961 (1103)
.+|.+.|.|+.|+|+..++++||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++|++| .|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999977 5677788886 99999999999999996 8999999
Q ss_pred EECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
||+.++..+.. +.+|.+.|.++.||.||..||+|+.|++|++||+..-
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 6689999999999999999999999999999999754
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=286.84 Aligned_cols=295 Identities=16% Similarity=0.253 Sum_probs=253.0
Q ss_pred CccceeEecccCCcCceEEEecC-CCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
+|...+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. +.++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 58899999999999999999999 665 999999999999999976 777776 78999999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
..++|+++|..+++++.|+.|++||+++|+++.. +. -...+.|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 9999999999999999999999999999987653 21 2346889999999955 78899999999999999999999
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
.+..|-+.|..+.|. +++..+++.+.|++++||+.+...... ..........++..+|+++++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 999999999999995 477899999999999999998776554 33444557788999999999998765 66788
Q ss_pred EEeCCCC---eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC-C
Q 001310 559 EWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G 634 (1103)
Q Consensus 559 iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-g 634 (1103)
++.+... ...+.+.+|... +.-..+.|+|||.+|++|+.||.+.+||..+-+.+..+..|. ..+..+.|+|. .
T Consensus 411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP 487 (503)
T ss_pred EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence 8876532 334567777632 345678999999999999999999999999999999998874 46899999994 5
Q ss_pred CEEEEEECCCeEEEEE
Q 001310 635 TLLAVIANENRIKILE 650 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~ 650 (1103)
..+|+++.+|.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6899999999999996
No 53
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=273.42 Aligned_cols=287 Identities=18% Similarity=0.275 Sum_probs=243.9
Q ss_pred ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
....|..+.|.|+|+.|++++..|.+.+|+... ..++....+|..+|+++.+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------------------------fnFEtilQaHDs~Vr~m~ws~ 148 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------------------------FNFETILQAHDSPVRTMKWSH 148 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce--------------------------eeHHHHhhhhcccceeEEEcc
Confidence 346789999999999999999999999998522 122222335999999999999
Q ss_pred CCCEEEEEc-CCeEEEEEcCCceeeEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEE
Q 001310 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890 (1103)
Q Consensus 813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 890 (1103)
+|.++++|+ +|.|++|+.+-.. ++.+..| ...|++++||| ....+++++.||+|+|||....+.-..+.||.-.|.
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 999999998 6999999987443 4444544 48999999999 677899999999999999999988889999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceE
Q 001310 891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 969 (1103)
Q Consensus 891 ~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~ 969 (1103)
+++|+|...++|++|.|..|++||..+|. ++.++.+|.. .|..+.|+|++++|++ +.|..++++|+++.+.
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 99999999999999999999999999977 6667777776 8999999999999999 5899999999998877
Q ss_pred EEEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEE
Q 001310 970 LKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIA 1048 (1103)
Q Consensus 970 ~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1048 (1103)
+.. +.+|...|+++.|+| ...+|.+|+.||.|..|.+...+.+..+. .+|-..|+ +++
T Consensus 299 l~~-~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------------------~AHd~~iw--sl~ 357 (464)
T KOG0284|consen 299 LFT-YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------------------PAHDGEIW--SLA 357 (464)
T ss_pred HHH-hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------------------ccccccee--eee
Confidence 776 778999999999999 45678899999999999998544443333 25777787 678
Q ss_pred ECCCCCcEEEEEecCCcEEEEccCCCCCC
Q 001310 1049 AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1077 (1103)
Q Consensus 1049 ~~p~~~~~l~~~~~dg~v~vw~~~~~~~~ 1077 (1103)
+||- |.+|++|+.|.++++|.-.-++.+
T Consensus 358 ~hPl-Ghil~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 358 YHPL-GHILATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred cccc-ceeEeecCCCcceeeeccCCCCCc
Confidence 9999 999999999999999986555544
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.6e-33 Score=269.75 Aligned_cols=274 Identities=22% Similarity=0.323 Sum_probs=234.5
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
..+.|.|+++..+ .+++|..|++|+|||..+-++++. +.||++.|-|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 4679999999643 379999999999999998887765 8899999999999 467999
Q ss_pred EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee---EEeecCCCceE
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVY 489 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~ 489 (1103)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.+|.+||+.....+ +.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 67799999999999853 7999999999999999876543 56789999999
Q ss_pred EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1103)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1103)
.+.| +.+++++++.|.+|++|+..+.+...++.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4569999999999999999999999999999999877765 5788888875 7789999999999999
Q ss_pred EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---------EEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPENPRICFNKNGTLLAVI 640 (1103)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~v~~s~~g~~l~~~ 640 (1103)
.++||+ .-|.++.|. .+.+++|+.||+|++||+..+... ..+. .+...|..+.|. ...+++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvss 465 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISS 465 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEec
Confidence 999999 899999995 578999999999999999876432 2222 223456677774 6688999
Q ss_pred ECCCeEEEEEcCCCCe
Q 001310 641 ANENRIKILETPESNS 656 (1103)
Q Consensus 641 ~~dg~i~iw~~~~~~~ 656 (1103)
+.|.+|.|||..++..
T Consensus 466 sHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGPP 481 (499)
T ss_pred cCCCeEEEEEcCCCCc
Confidence 9999999999987743
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=245.10 Aligned_cols=293 Identities=16% Similarity=0.213 Sum_probs=236.7
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEE
Q 001310 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1103)
Q Consensus 731 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 809 (1103)
.+|.+++..++|+|. |..|++++.|..|++|+..... -|. |. ..+ ..+|...|+++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-----ck--~vl-d~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-----CK--TVL-DDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-----EE--Eec-cccchheeeeee
Confidence 458889999999999 8899999999999999865311 011 01 111 126999999999
Q ss_pred EecCCCEEEEEc-CCeEEEEEcC--CceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEec
Q 001310 810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 883 (1103)
Q Consensus 810 ~s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 883 (1103)
++|.|++||+++ |.++.||.-. +.+++.++.+|.++|.+++|++ +|.+||+++.|+.|.||.+..+ ++...+.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 8999999876 4578999999999999999999 9999999999999999999854 5788999
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEE
Q 001310 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 962 (1103)
Q Consensus 884 ~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iw 962 (1103)
.|+..|..+.|+|...+|+|+|.|.+|++|+-..+. ...+.+.+.+|.. .|.+++|++.|..|+++ .|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 999999999999999999999999999999887322 2446777888775 79999999999999985 88999999
Q ss_pred ECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCce
Q 001310 963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHV 1042 (1103)
Q Consensus 963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1042 (1103)
... ..+...|++++..+.|. ...|++++.|+.|++|.-.....-..+... + .....|...|
T Consensus 223 ~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~-----------~~~~aHe~dV 283 (312)
T KOG0645|consen 223 RLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-A-----------KKEGAHEVDV 283 (312)
T ss_pred eec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-H-----------hhhccccccc
Confidence 865 22344578899999998 457999999999999987643222222100 0 0112477767
Q ss_pred eeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1043 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1043 ~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
. ++.++|...++|++|++||.|++|++.
T Consensus 284 N--sV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 N--SVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c--eEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 678888668999999999999999974
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-30 Score=283.19 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.6
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+++++|.++|++++|+|+++ ++++|+.||.|.+||+.+++.... +.+|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 688999999999999998875543 5578899999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
+++|++++.+|.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678988999999999977 7888888999999999999999999999999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
+.++++++. +.++++++.||.|++||+...+....+..+...+.+++|+|+++.+++++. ++.+.+||+.+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999764 568888888999999999988888888888889999999999999998875 56699999999988
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
+..+..+. ..+.++.|+|++..+++++.+|.|++|++.+++....+..+ ...+.+++|+|+++++++++.|+.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 79999999999888888888999999999999888888754 34689999999999999999999999
Q ss_pred EEE
Q 001310 648 ILE 650 (1103)
Q Consensus 648 iw~ 650 (1103)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 995
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.4e-30 Score=293.43 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC-
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 472 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~- 472 (1103)
.|...|.++.||+||+++++++.++.+++|+..+.+. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3478999999999999999999999999999977662 12335689999999999999999 8999999999999999
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
..+..++++++|...|++++|++ +++++++|+.|++|++||+.+++....+..|...|.+++|++++++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999976 5589999999999999999999999999999999999999999999999865
Q ss_pred CceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC-CCCceEE
Q 001310 553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 629 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 629 (1103)
++.|++||+.++. +...+.++.... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7779999999999 567888877333 7999999999999999999999999999999999988877553 1334555
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeEecccc-ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec--c
Q 001310 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 706 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 706 (1103)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++.+ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 6789999999999999999999999999999999 7777777776 5566677776 6
Q ss_pred cccccccccc
Q 001310 707 ENKSEVEKPL 716 (1103)
Q Consensus 707 d~~i~~w~~~ 716 (1103)
|+.+++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 7889999754
No 58
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.98 E-value=8.5e-30 Score=266.19 Aligned_cols=628 Identities=17% Similarity=0.169 Sum_probs=354.5
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..+-.|.+|++.|+.+.|||-...|||+||.|..|+||.+..|-...- .-....+.+..-.|.++.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 455678899999999999997777999999999999999985532210 0122235555678899999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCceeEEeec
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEG 483 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 483 (1103)
+|...-|...+..|+++|||+.+++.+. .+.+|...|.++.|+.||+ +|++.+.|+.|+|||.+ .++.+++.++
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977666666788999999999986554 7889999999999999999 89999999999999987 4678888888
Q ss_pred CCCce-EEEEeeecCCccEEEEEECC----CeEEEEEcCCCCe-eEEecCC-CccEEEEEEccCCCEEEEEecCCCCcee
Q 001310 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1103)
Q Consensus 484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1103)
|.+.- ..+.| .++-..|++.+.+ ..|++||...-.. ..++... ...|.---|.||.++|+.++ .++..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87652 22334 3444566666654 4589999876433 2232221 22455667899999998876 35777
Q ss_pred EEEEeCCCCeeEEE--EecccccCCceEEEEEcCCCCEEEE---------------------------------------
Q 001310 557 LVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILA--------------------------------------- 595 (1103)
Q Consensus 557 i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~--------------------------------------- 595 (1103)
++.+.+...+..-. ++..- .......++-|....-+.
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~ 364 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETR 364 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCcccc
Confidence 88888765443110 00000 000011111111000000
Q ss_pred EeCCCc-EEEEECCCCeeEEEEcC------CCCC----------------CCCceEEEec--------------C-CCEE
Q 001310 596 AGDDHV-IKIWDMNKVQLLTTIDA------GGGL----------------PENPRICFNK--------------N-GTLL 637 (1103)
Q Consensus 596 ~~~dg~-i~iwd~~~~~~~~~~~~------~~~~----------------~~v~~v~~s~--------------~-g~~l 637 (1103)
|..-+. ---|=-.+.+.+..... |+.. ..+......| | ...-
T Consensus 365 G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qp 444 (1012)
T KOG1445|consen 365 GAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQP 444 (1012)
T ss_pred CCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCC
Confidence 000000 00011111111111100 0000 0000000000 0 0000
Q ss_pred EEEECCCeEEEEEcC-----CC----C-eeEeccccccceeeeE------EecCCcee--------eeeccCCceEecCC
Q 001310 638 AVIANENRIKILETP-----ES----N-SVDAAGVLSDNLRKLS------VNPISTVT--------GAGIANGSVSVNED 693 (1103)
Q Consensus 638 ~~~~~dg~i~iw~~~-----~~----~-~~~~~~~~~~~i~~~~------~~~~~~~~--------~~~~~~~~~~~~~~ 693 (1103)
++. ....++-.+.. .+ . .....++....+..+. ..|....+ ..++..+. .. ++
T Consensus 445 aV~-~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~k-sv-Pe 521 (1012)
T KOG1445|consen 445 AVP-KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGK-SV-PE 521 (1012)
T ss_pred CcC-cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccc-cC-CC
Confidence 000 00000000000 00 0 0000000111110000 00000000 00000000 00 00
Q ss_pred CCCC--Cccce-------eecc------ccccccccccccCCcc----ceeeeccCccccccEEEEEEecCCcEEE--Ee
Q 001310 694 PKED--VKPEI-------SVEA------ENKSEVEKPLFARPSE----CQSLLLPSKVKANKISRLTYNNGGQAIF--AL 752 (1103)
Q Consensus 694 ~s~d--~~~l~-------s~~~------d~~i~~w~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~--~~ 752 (1103)
..|. |..+- +.+. -|.+.-+.-..+.... ...++--...-.+.-.. |..+..+++ ..
T Consensus 522 ~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnG--fcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 522 QPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNG--FCANNKRVAVPLA 599 (1012)
T ss_pred CCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCc--eeeccceEEEEec
Confidence 0000 00000 0000 0111111100000000 00000000000111122 222333333 34
Q ss_pred ecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec-CCCEEEEEc-CCeEEEEEc
Q 001310 753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSAS-GGVISLYIV 830 (1103)
Q Consensus 753 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~~-dg~i~iwd~ 830 (1103)
+..|.|-||+++.....+++.... .-....|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~----------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPG----------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccc----------------------cccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 567999999998876655555332 12566788999998 677888887 699999999
Q ss_pred CCce-------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEE
Q 001310 831 MTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 903 (1103)
Q Consensus 831 ~~~~-------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 903 (1103)
..+. .-..+..|...|+++.|+|--...|++++.|-+|++||+.+++....+.+|++.|..++|||||+.+|+
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 7543 234567899999999999976789999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-E----eCCeEEEEECCCce--EEEEeeCC
Q 001310 904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V----HETHLAIYEAEELT--CLKQWFPI 976 (1103)
Q Consensus 904 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~v~iwd~~~~~--~~~~~~~~ 976 (1103)
.+.||+|++|+...++. .+..-.+. ....-..+.|.-||+++++ | ++.+|.+||..+.. .+.+....
T Consensus 738 VcKDg~~rVy~Prs~e~----pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQ----PVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred eecCceEEEeCCCCCCC----ccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 99999999999988652 22222222 2234567899999999987 5 34579999987543 22221110
Q ss_pred CCcCeEEEEEccCCCE-EEEEecCCcEEEEeCCCc
Q 001310 977 SSVPISQATFSCDCRM-VFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 977 h~~~v~~l~fs~dg~~-l~t~~~dg~v~vWd~~~~ 1010 (1103)
-...+.--.+.+|... ++||-.|..|.+|++...
T Consensus 812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 1111122234456654 667778999999998654
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.1e-31 Score=271.56 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=253.3
Q ss_pred eccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecC-CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4889999999999999 899999999999999999987 65565 7889999999999999999 799999999999
Q ss_pred EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
+||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++....+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 45678899998875 57999999999999999999999889999999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEEcCCCCCCCC
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 625 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 625 (1103)
. +..+++|+...+-.+....... .....++..+|+++++++-+.|+.|.++.+...- ..+.+.+|.-...-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5569999999887776655544 3467889999999999999999999999865432 22344555433345
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1103)
..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|. ....+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence 67999999999999999999999999999999999999999999999974 345689999
Q ss_pred ccccccccc
Q 001310 706 AENKSEVEK 714 (1103)
Q Consensus 706 ~d~~i~~w~ 714 (1103)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.2e-31 Score=260.44 Aligned_cols=278 Identities=16% Similarity=0.256 Sum_probs=235.1
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
....|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4468999988 56789999999999999999987766 688999999999984 45 899999999999999999
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+..... ...+.+|...|+.+.|+. ++++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999984 24999999999999999987663 335678888999888864 58988865
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
+.+|++|++.+++.++.+.+|. ..|.|+.+ .++.+++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 78888776 578999999999999999999999999998855 58999996
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCe---------eEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310 632 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1103)
.+.+++|+.||+|++||+..+.. +..+..|.+.|..+.|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 67899999999999999987632 33444566666655553 56688
Q ss_pred eeccccccccccccccCCccce
Q 001310 703 SVEAENKSEVEKPLFARPSECQ 724 (1103)
Q Consensus 703 s~~~d~~i~~w~~~~~~~~~~~ 724 (1103)
+.+.|.+|.+||+..+.+....
T Consensus 464 sssHddtILiWdFl~~~~~~~~ 485 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPSAAE 485 (499)
T ss_pred eccCCCeEEEEEcCCCCccccc
Confidence 9999999999998765554433
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=243.12 Aligned_cols=290 Identities=16% Similarity=0.214 Sum_probs=255.1
Q ss_pred EecccCCcCceEEEecC---CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 328 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~sp---dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
.+-.||+.+|..++||| +| ++|++++.|+.-.+-+-++|.=+.+ +.||.+.|+...+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34589999999999985 77 5899999999999999999988876 7799999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeec
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 483 (1103)
..+..+-|+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.++.+||+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 33 5888999999999999 79999999999999998765 4578899
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
|.+.|..+.|.. ..+.+++.+.|++||+||.+++.....+.. ..+++++.++++|++|..+.. +.|..||..
T Consensus 142 htg~Ir~v~wc~--eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCH--EDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEec--cCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence 999999998864 336788889999999999999998887764 458999999999999988753 349999999
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
+-..++.+.... .|.+..++|+...+++|++|..++.||..+|+.+..+ .+| ..+|.|+.|+|+|...++|+.
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCC
Confidence 999988887654 7899999999999999999999999999999999886 433 467999999999999999999
Q ss_pred CCeEEEEEcCCCCee
Q 001310 643 ENRIKILETPESNSV 657 (1103)
Q Consensus 643 dg~i~iw~~~~~~~~ 657 (1103)
||+|++|....++..
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998766443
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-30 Score=235.75 Aligned_cols=268 Identities=20% Similarity=0.314 Sum_probs=236.6
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ +..+|...|..++.+.|+. .+++|+.|+.|.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 477899999999999999999999999999999999998777 7889999999999999998 69999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
|+++|+.++.+.+|.+.|+.+.|+ ++...+++|+.|..+++||.++.. +++.+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999999999999994 466799999999999999988654 445566666677777664 45677776
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1103)
. +++++.||++.|+....+.+ .+|+++.|+++++..++++.|+++++.|-.+|++++.+.+|.....-..+
T Consensus 163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 5 67799999999998777776 45999999999999999999999999999999999999988776555678
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccc-eeeeEEecCC
Q 001310 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPIS 676 (1103)
Q Consensus 629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~ 676 (1103)
+++.....+++|++||.+.+||+.....+..+..+... +..+++.|.-
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 88888889999999999999999999999888888777 7788887643
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.3e-29 Score=303.99 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.2
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg 408 (1103)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 799999999999999864211000 0 000000122 346899999987 58
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
.+||+++.||+|++||+.+++.+. .+.+|...|++++|+| ++. +|++|+.|++|++||+.++.++..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876554 6789999999999997 667 8999999999999999999999888755 67
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1103)
|.++.|.+ +++.++++|+.||.|++||+++.. ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7888888875 667999999743
Q ss_pred -----eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-----------CCCCCCCceEE
Q 001310 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1103)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1103)
..+..+.+|. ..+..++|++++.+|++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888877 8899999999999999999999999999876654433211 12234589999
Q ss_pred EecCCCEEEEEECCCeEEEEEc
Q 001310 630 FNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
|+|++..|++|+.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2e-28 Score=266.89 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.4
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.++|.+++|+|++++|++++.+|.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876433 5678999999999999997 799999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+.+++.+..+..|...+.++.+++. +.++++++.||.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998899999999999999999754 568888888999999999988888888888889999999999998888763
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
++.|++||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+..++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 5569999999998888888766 789999999999999999999999999999988888775543 368999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1103)
|++.++++++.++.+++|+..+++....+..+...+.+++++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888888888887 6788899999999999
Q ss_pred ccc
Q 001310 712 VEK 714 (1103)
Q Consensus 712 ~w~ 714 (1103)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.8e-29 Score=254.51 Aligned_cols=287 Identities=19% Similarity=0.225 Sum_probs=243.5
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
..+.|. .|++++|||...+=+|+.+. -.+.||+..+....++ +......|.++.|-.||
T Consensus 22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence 345565 99999999966543444433 6799999988776654 33456789999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
++||+|+..|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|.+.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 999999999999999977644444 57899999999999998876 89999999999999999999877999999999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-e
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I 567 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~ 567 (1103)
.+.+++|. ++..+++|+.||.|++||.+.......--.|+.+|..+.+-|.|..++++++ +.+++||+.+|. .
T Consensus 157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL 230 (487)
T ss_pred EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence 99999875 5579999999999999999998666666678899999999999999999874 349999999654 4
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
+..+..|. ..|+|+++..++..|++|+-|+.+++||+.+.+.+..+... .+|.+++.+|++..++.|..+|.+.
T Consensus 231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceee
Confidence 44444466 89999999999999999999999999999999999998776 4589999999999999999999887
Q ss_pred EEEcC
Q 001310 648 ILETP 652 (1103)
Q Consensus 648 iw~~~ 652 (1103)
+-+..
T Consensus 305 ~rr~~ 309 (487)
T KOG0310|consen 305 IRRRE 309 (487)
T ss_pred eehhh
Confidence 76433
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.6e-30 Score=255.71 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=257.1
Q ss_pred ccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1103)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1103)
-+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..+.
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCC
Confidence 36678999999999999999999999966 489999999999999987762221 127788899
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
|+++.|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++||+..+.|.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999876554 7889999999999998776 5999999999999999999988
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
.++- ....+.+|+.. ...+++|-.|+.|++||.++.........++ .|+++..+++|..+.+++. +..+.
T Consensus 297 kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~ 366 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLK 366 (459)
T ss_pred cccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCcee
Confidence 7764 33344555542 3578999999999999999999888888776 9999999999999999976 55699
Q ss_pred EEeCCCCeeEEEEeccccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310 559 EWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 637 (1103)
+.|+++.+....+...... ....+.+.|+|++.++++||.||.|+||++.++++...+......+.|.+++|+|.|..+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 9999999988887654321 234888999999999999999999999999999999999877665579999999999999
Q ss_pred EEEECCCeEEEE
Q 001310 638 AVIANENRIKIL 649 (1103)
Q Consensus 638 ~~~~~dg~i~iw 649 (1103)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999998
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-28 Score=235.12 Aligned_cols=316 Identities=17% Similarity=0.212 Sum_probs=243.9
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
......|..|++++.+.+|||||. ++|+|+.|..|+|.|++..-.. ...++..-+.....+.+. .+-.|...|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccce
Confidence 344567889999999999999998 8999999999999999721000 000000000001111122 377899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 481 (1103)
.|+|-...|++|+.|++|+++|+......+....+ ....+|.++.|.|.|. +|+.|....++++||+++-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 99999999999999999999999765433333222 3456899999999999 8888998899999999998886543
Q ss_pred --ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-CC-CccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-AP-GLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 482 --~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
..|.+.|+++.++ +.+.+.++++.||.|++||--+++++.++. .| +..|.+..|+.+|+++++.+. +..+
T Consensus 256 Pd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 4689999999885 467899999999999999988888877654 33 347999999999999999875 6779
Q ss_pred EEEeCCCCeeEEEEecccccC--CceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310 558 VEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1103)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 634 (1103)
++|.+.+++.+..+.|....+ ..-+...|+....+++.-. ..+.+.-||.+++..+..+.. ++...+..+.-||.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 999999999999998763111 1223345777777777644 457899999999887776654 344678999999999
Q ss_pred CEEEEEECCCeEEEEEcC
Q 001310 635 TLLAVIANENRIKILETP 652 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~ 652 (1103)
.-+++++.|...++|--.
T Consensus 409 p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred Cceeeecccceeeeeeec
Confidence 999999999999999643
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.1e-27 Score=294.09 Aligned_cols=323 Identities=14% Similarity=0.173 Sum_probs=247.9
Q ss_pred CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC----Ccc
Q 001310 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1103)
Q Consensus 356 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~----~~~ 431 (1103)
+|.+++|+..+-...... +..-+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888887764433211 11114469999999999999999999999999999998642 111
Q ss_pred c-cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCe
Q 001310 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1103)
Q Consensus 432 ~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1103)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3467999999886433 7999999999999999999999999999999999999753 5679999999999
Q ss_pred EEEEEcCCCCeeEEecCCCccEEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-eEEEEecccccCCceEEEEEcC
Q 001310 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
|++||+.++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988877766644 578899995 57999999875 6679999998765 456677776 889999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1103)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1103)
++..+++++.|++|++||+..+ ..+..+..|. ..+..++|+|++++|++|+.|+.|.+|+......+.....
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566776653 4578999999999999999999999999765533221110
Q ss_pred cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1103)
Q Consensus 663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 742 (1103)
... + .+ .. .....+...|.+++|
T Consensus 749 ~~~-------------------------------~-----------~~-------------~~--~~~~~~~~~V~~v~w 771 (793)
T PLN00181 749 KTI-------------------------------D-----------PV-------------SG--LEVDDASQFISSVCW 771 (793)
T ss_pred ccC-------------------------------C-----------cc-------------cc--cccCCCCcEEEEEEE
Confidence 000 0 00 00 000124567999999
Q ss_pred ecCCcEEEEeecCceEEEeec
Q 001310 743 NNGGQAIFALASNGVHLMWRW 763 (1103)
Q Consensus 743 s~~g~~l~~~~~dg~i~vw~~ 763 (1103)
++++..+++++.+|.|++|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999985
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=242.21 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=250.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcccc-----ceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~-----~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
|....+.|..|||||+||++|+.||.|.+||..+|+..+. ...+--+..+|.|+.||.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 4566788999999999999999999999999999875331 223445778999999999999 899999999999
Q ss_pred EEeCCCCceeEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 469 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 469 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
||.+.+|.|++.|. .|...|+++.|+ .|+..+++++.|.++++.-+.+++....+.+|..-|+...|++||.+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FS--rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFS--RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEc--cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 899999999995 567789999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCC-CCCCCC
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 625 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 625 (1103)
+. +++|++|+..+.+++.+|+... .+.+|+.+-.-|. ..+++++...++|+|.++. |+.++.+... ......
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 86 6679999999999999988654 3467888877765 4678888899999999985 6777777543 223346
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1103)
.+++.+|.|.++.+.+.|+.++.|...++..-..+..|...+..++-. |..+.+++-+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----------------------PHqNllAsYs 498 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----------------------PHQNLLASYS 498 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----------------------cccchhhhhc
Confidence 788899999999999999999999999999999999888888777766 6778899999
Q ss_pred ccccccccc
Q 001310 706 AENKSEVEK 714 (1103)
Q Consensus 706 ~d~~i~~w~ 714 (1103)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999996
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-28 Score=230.05 Aligned_cols=287 Identities=10% Similarity=0.098 Sum_probs=238.6
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
.|+||..+++.+.|+.+|. ||.+++.|.++.||=..+|+++.+ +.||++.|+|++.+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4689999999999999999 899999999999999999999987 88999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-----CCCceEEEeCC-------CCc
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~ 476 (1103)
++|++|+.|.++++||+++|+++. .+ ....+|..+.|+++|. +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la---~~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLA---TW-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEE---Ee-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 999999999999999999998765 33 3556899999999998 333332 33579999987 455
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1103)
+...+..+...++.+.|.+ -+++|++|..||.|.+||++++.... .-..|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 6788888889999999966 45799999999999999999986655 44778889999999999999999986 55
Q ss_pred eEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc--EE------------EEECCCCeeEEEEcCCCC
Q 001310 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IK------------IWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~ 621 (1103)
+-.+||..+-+.++++.... +|++.+++|...+++.|+.-.. |. +|++-..+.+..+.+|
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-- 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-- 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--
Confidence 68999999999999998744 9999999999888888663221 21 2222222334445544
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
..+|++++|+|+|+..++|+.||.|++.-.+.
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 56899999999999999999999999986553
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.1e-28 Score=272.18 Aligned_cols=307 Identities=19% Similarity=0.247 Sum_probs=248.6
Q ss_pred cCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
.+...|..++.+|||. .+|+|+ .|+.+.||+.+.=-.- .+-++.. .+-....+..|.+.|.|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 3456789999999998 589999 7999999997531100 0001110 1111223667999999999999999
Q ss_pred EEEEEeCCCeEEEEEecC---C------------CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
+||+|+.|+.|.||.... + +..+....+.+|...|..++|+|++. +|++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 899999999999999999
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC------ccEEEEEEccCCCEEEEEe
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~ 548 (1103)
.+.+..+++|.+.|..+.|.| -|+++++-+.|++|++|+..+-.....+..+- ..+..+.|||||.+|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 999999999999999999955 67899999999999999977655555444332 2578899999999999987
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-------------CC----EEEEEeCCCcEEEEECCCCe
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-------------KD----QILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~ 611 (1103)
.-..+...+.|.+-.+.+.-..+.||. .++.+++|+|. .+ .+++|+.|++|-||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 766677889999998888889999999 89999999972 11 46679999999999998888
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
++.....-.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7765543322 46899999999999999999999999998754
No 72
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-26 Score=243.02 Aligned_cols=638 Identities=16% Similarity=0.164 Sum_probs=358.3
Q ss_pred eeccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCc--c-ccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310 390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD--A-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 390 ~~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~--~-~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
.++.+|+..|+.+.||| +..+||+|+.|..|+||.+..|-. + .....+.+..-.|.++.|+|.... +++ .+..|
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g 150 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG 150 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence 35889999999999999 777999999999999999985432 1 112233344457899999997774 444 44578
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCc-cEEEEEEccCCCE
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRR 543 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~i~~~~~s~dg~~ 543 (1103)
+++|||+.+++.+..+.+|...|.++.| +.||.+|++.+.|..|+|||.+.... ......|++ .-..+.|..+-..
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 9999999999999999999999999998 66899999999999999999886543 344455544 3345677766667
Q ss_pred EEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEE--EcCC
Q 001310 544 LFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTT--IDAG 619 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~--~~~~ 619 (1103)
|++.+.+......+++||.+. +..+.++.-.. ...+.---|.||.+.++. |-.+.++..+.+...++... +...
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~t 306 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELT 306 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhc
Confidence 777776555566799999875 33444444322 234555568898877665 44678888888876554311 1111
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEe--------------------------------ccccccce
Q 001310 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA--------------------------------AGVLSDNL 667 (1103)
Q Consensus 620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------~~~~~~~i 667 (1103)
.. ......+.-|...+-+..+. ..+++.+.....+.. +.+....+
T Consensus 307 le-~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~v 383 (1012)
T KOG1445|consen 307 LE-EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVV 383 (1012)
T ss_pred ch-hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccc
Confidence 00 01122333332221111111 112222221111100 01111111
Q ss_pred eeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc-------------ccCCccceeeeccCcccc
Q 001310 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL-------------FARPSECQSLLLPSKVKA 734 (1103)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~-------------~~~~~~~~~~~~~~~~~~ 734 (1103)
..+.+.|........+ +..-|....--+++. +.+.-.. ...+..... +.....
T Consensus 384 qKvSl~Pa~r~h~~~p--------p~~~P~p~~a~t~sf---~~v~~ppaaP~~~~n~~~~~~~~Pd~~~q---paV~~~ 449 (1012)
T KOG1445|consen 384 QKVSLAPAQRSHSPPP--------PEPVPTPKVAQTPSF---VPVPTPPAAPRPMSNNNSSSNNVPDVQEQ---PAVPKK 449 (1012)
T ss_pred cccccCchhccCCCCC--------CCCCCCcccccCCCC---ccccCCCCCCCccccccccccCCCccccC---CCcCcc
Confidence 1122211111100000 000010000001110 0000000 000000000 000000
Q ss_pred ccEEEEEEec----CC---------------cEEEEeecCc----------------eEEEeecCCCcccc----c--cc
Q 001310 735 NKISRLTYNN----GG---------------QAIFALASNG----------------VHLMWRWPRNDLTL----S--TE 773 (1103)
Q Consensus 735 ~~i~~~~~s~----~g---------------~~l~~~~~dg----------------~i~vw~~~~~~~~~----~--~~ 773 (1103)
..++.+..-| .| ..+-+.+... +..+..-...+..+ . +.
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~ 529 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGK 529 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCC
Confidence 1111111110 00 0000000000 00000000000000 0 00
Q ss_pred -ccc------c----------cCCeeecCCCCCceeec----cCCCCCCCCCeeEEEEecCCCEEEEE---cCCeEEEEE
Q 001310 774 -ATT------K----------VPPRLYQPRHGPQFMVN----DTTDSNSQEAVPCFALSKNDAYLFSA---SGGVISLYI 829 (1103)
Q Consensus 774 -~~~------~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~l~~s~d~~~l~~~---~dg~i~iwd 829 (1103)
..+ . +.+.-|.-..|...... .+......-+-.+=-|..+.+++|+- +.|.|.||+
T Consensus 530 ~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~e 609 (1012)
T KOG1445|consen 530 PISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYE 609 (1012)
T ss_pred CccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEE
Confidence 000 0 00000111111100000 00000000011122244566666653 368999999
Q ss_pred cCC-ceeeEE-ec--CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------eeEEEeccCCCCEEEEEEccC-
Q 001310 830 VMT-FKTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLVFSDA- 897 (1103)
Q Consensus 830 ~~~-~~~~~~-~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d- 897 (1103)
+.. |++... +. .....|+.+.|.|.|...||+++.||.|++|.+..+ +.-..+.+|...|+++.|+|-
T Consensus 610 l~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA 689 (1012)
T KOG1445|consen 610 LNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA 689 (1012)
T ss_pred cCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh
Confidence 974 332221 11 134579999999999999999999999999998764 345678899999999999995
Q ss_pred CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCC
Q 001310 898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI 976 (1103)
Q Consensus 898 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~ 976 (1103)
...|++++.|.+|++||+.+++.. ..+.+|.. .|..++|||||+.+|+ +.||+|++|+-++++.....-.+
T Consensus 690 advLa~asyd~Ti~lWDl~~~~~~-----~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 690 ADVLAVASYDSTIELWDLANAKLY-----SRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred hhHhhhhhccceeeeeehhhhhhh-----heeccCcC---ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 468999999999999999986632 34566665 8999999999999998 79999999999887765321222
Q ss_pred C-CcCeEEEEEccCCCEEEEEecC----CcEEEEeCCCceeE--EeeccccccCCCCCCCceeeEeeccCCceeeEEEEE
Q 001310 977 S-SVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQ--CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAA 1049 (1103)
Q Consensus 977 h-~~~v~~l~fs~dg~~l~t~~~d----g~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1049 (1103)
. ..+-..+.|.-||+++++.+-| ..|.+||.++.... .... .+..+ ..+.-.+
T Consensus 762 pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~-lDvap-------------------s~LvP~Y 821 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV-LDVAP-------------------SPLVPHY 821 (1012)
T ss_pred CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee-ecccC-------------------ccccccc
Confidence 1 3444568899999999888766 45889998875532 1111 00000 0122356
Q ss_pred CCCCCcEEEEEecCCcEEEEccCCCCCCC
Q 001310 1050 HPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1078 (1103)
Q Consensus 1050 ~p~~~~~l~~~~~dg~v~vw~~~~~~~~w 1078 (1103)
++|.+.++++|-.|..|..|++.....-.
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEecCCCcee
Confidence 67777899999999999999986555543
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-26 Score=225.28 Aligned_cols=287 Identities=16% Similarity=0.240 Sum_probs=237.6
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
+..-.+.|.++.|+++|. ++++++.|.+++|||..+|+++++ ...+...|..+.|.....
T Consensus 10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 344567999999999999 577788999999999999998876 445677888999988877
Q ss_pred EEEEEeC--CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 410 ~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
.++.++. |.+|+.-++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777766 7899999999998777 7899999999999999998 8999999999999999999988877655555
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEec---CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+. +| ++.|-++|++...+.|++||++.-. +..++. ......+.+.|||||++++.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 54 44 5577888888888899999998642 233333 33557899999999999999875 567999999
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
-+|.....+.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ...++.++.|+|.-..+++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~- 294 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS- 294 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC-
Confidence 999999999988744444467889999999999999999999999999999999875 345688999999876666655
Q ss_pred CCeEEEEEcC
Q 001310 643 ENRIKILETP 652 (1103)
Q Consensus 643 dg~i~iw~~~ 652 (1103)
..+.+|-..
T Consensus 295 -s~l~fw~p~ 303 (311)
T KOG1446|consen 295 -SNLVFWLPD 303 (311)
T ss_pred -ceEEEEecc
Confidence 467788544
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8.3e-28 Score=237.78 Aligned_cols=282 Identities=20% Similarity=0.366 Sum_probs=234.4
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC---C
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 408 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g 408 (1103)
-|.+.|.++... ++ .+.+|++||.++|||.. |+..+. +.||.++|.+++|--. .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 577899999999 44 58999999999999965 555544 7799999998888643 3
Q ss_pred CEEEEEeCCCeEEEEEecCCCccc-cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC--------------
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-------------- 473 (1103)
..+++++.|.++++|.++.++... ......||...|-+++..++|. .+++|+.|.+|.||+..
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 369999999999999998876432 2223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC
Q 001310 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1103)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~ 542 (1103)
++.++-++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.. ...+.++..+|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc
Confidence 1234567889999999999965 35899999999999999999888776654 45789999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCe---eEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-eEEEEc
Q 001310 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1103)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~ 617 (1103)
+|++++. +..|++||.+++. ....+.+|. +.|.++.|+|... +|++|+.|+++++||+++.. ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999986 6679999999764 346677877 8999999999865 46679999999999999877 888888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
.|. ..|.++.|+. +..+++|+.|++|+|+...
T Consensus 387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 774 4589999985 6799999999999998644
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=222.79 Aligned_cols=279 Identities=16% Similarity=0.246 Sum_probs=240.4
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp- 406 (1103)
+.+.+|...|..|+|+.+|. -||+|+.|+++.+|+++....... ....+|.+.|-.++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCC
Confidence 56789999999999999998 499999999999999998854433 12678999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
...++++++.|.+|++||+..+++.... ... +.=..+.|+|+|. +++.++.|..|.+.|.++.+.....+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 6789999999999999999999876633 222 2334678999999 79999999999999988887766554 445
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
.+..++|+. ++.+++....-|+|.|..+...+.+..+..|...+.|+.|+|+|+++++|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 577788873 3456777777899999999999999999999999999999999999999987 6679999999999
Q ss_pred eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 643 (1103)
+++.+..+. -+|+.+.|+.+|++|++||+|..|-|=++++|..+..++..+ +...|+|+|...+||.+.+|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 999999888 999999999999999999999999999999999999998764 46899999999999988775
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5e-28 Score=265.45 Aligned_cols=310 Identities=15% Similarity=0.186 Sum_probs=225.3
Q ss_pred ceeEecc-cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
...|.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+.... ..-+.+.....+. . .+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~-----~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYN-----A-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccchhhhhhh-----h-ccccCccc
Confidence 4456666 9999999999999999 699999999999999977544211 0000000000000 0 00011111
Q ss_pred ECC---CCC--EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++||+|++...+|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 011 11112222222222211111123455788999999999999876 6999999999999999999999
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
..|. |.+.|+|++|+|. |.+++++|+-||.+|||++...+...-.. ...-|++++|.|||++.++|+. +|.++
T Consensus 404 ~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEeccc-CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 9999999999997 55899999999999999998755544433 3478999999999999999987 66699
Q ss_pred EEeCCCCeeEEEEeccc-----ccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 559 EWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
+|+....+....+.-+. .....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 99998877765544322 112379999999754 358889999999999999999998888766555567889999
Q ss_pred CCCEEEEEECCCeEEEEEcCCC
Q 001310 633 NGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 633 ~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998644
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=8.5e-29 Score=230.34 Aligned_cols=287 Identities=14% Similarity=0.182 Sum_probs=253.8
Q ss_pred ccCCCccEEEEEECC---CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 392 ~~~h~~~V~~~~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 668999999999996 89999999999988777777876665 7899999999999988877 689999999999
Q ss_pred EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEE
Q 001310 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
|||.-+|..+++|. |...|.+++| +.|..+|++|+.+..+|++|++..+. ...+.++.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 8899999999 45778999999999999999987654 45788899999999999999999987
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
+. ++.|++||.+++..++.+... .+|+++..+++|++|.+ ...+.|.+||..+...++.+..+.. |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---ccc
Confidence 54 666999999999999999874 48999999999876544 4567899999999999999887643 789
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEec-cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1103)
.+.+|+...+++|+.|..++.||..++..+... ++|..+|.|+.|+ |||...++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999998885 9999999999997 78888999999
Q ss_pred ccccccccccccCC
Q 001310 707 ENKSEVEKPLFARP 720 (1103)
Q Consensus 707 d~~i~~w~~~~~~~ 720 (1103)
||+|++|....++.
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999775443
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-27 Score=220.40 Aligned_cols=286 Identities=13% Similarity=0.154 Sum_probs=239.3
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+. ++.||++.|+|+..+-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998888666 7899999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-----CCeEEEEEcC-------CCCeeEEecCCCccEEEEEEc
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 538 (1103)
|+++|+++.+++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 567899999965 4455555433 3569999987 344566777788899999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310 539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
|-+++|++|.. ++.|.+||.++|.. +..-+.|. ..|+.+.++++..++++++.|.+-++||+.+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 56699999999854 44445555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCeEEEEE--------------cCCCCeeEeccccccceeeeEEecCCceeeeec
Q 001310 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILE--------------TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1103)
Q Consensus 618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 683 (1103)
.. .++++.+++|....++.|+.....-+=- +-..+.+...++|..+|++++++
T Consensus 230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 65 4589999999888887776543332221 11223456778999999999997
Q ss_pred cCCceEecCCCCCCCccceeecccccccccccc
Q 001310 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
|+|+..++|+.||.||+...+
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999986544
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.3e-26 Score=207.71 Aligned_cols=309 Identities=17% Similarity=0.208 Sum_probs=238.4
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeee-eeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
..++.+|+.. ..|.+++|+|.|. +.|+|+...+.+|-....-..++. .+- ..-.+...-..-+.|.+.|.|.
T Consensus 23 f~~i~~l~ds-qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea-----~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 23 FEAINILEDS-QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEA-----AKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred eEEEEEecch-hheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccc-----ccCCCeEEeeeccccCccEEEE
Confidence 3566777765 4999999999998 789999999999876543221110 000 0000011111245689999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecC--CCccccceEeccccccEEEEEEecC---CCceEEEEEc-CCCceEEEeCCCCc
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGS 476 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~ 476 (1103)
+|||+|.+||+|++|.+|++.-.+. ........++.-|.+.|..++|-.+ +.. +|++++ .|..|++-|..+|+
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCC
Confidence 9999999999999999999876543 3334444567889999999999654 222 566655 57788888999999
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC-------CCccEEEEEEccCCCEEEEEec
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
..+.+.+|.+-|.++-- -++..+++|+.|.+|++||++-..+..++.. ....|.+++..|.|++|+++..
T Consensus 175 ~~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred cceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 99999999999988742 2667999999999999999998877765532 2247899999999999999876
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCCCCCC
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPEN 625 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v 625 (1103)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... -.+.....| ...+
T Consensus 252 ----dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~ 322 (350)
T KOG0641|consen 252 ----DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKA 322 (350)
T ss_pred ----CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCce
Confidence 5558899999999999999988 89999999999999999999999999998642 112222223 3457
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
..+.|+|..--+++.+.|.+..+|.+.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 789999998889999999999999764
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.2e-26 Score=257.33 Aligned_cols=288 Identities=12% Similarity=0.123 Sum_probs=224.8
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 411 (1103)
|-..|....+++|+. .+++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 445777888899976 36777778888899877664321 11111111122334789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1234468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCcc-EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
|.+++|++ ++.+|++++.|++|++||+++++....+..|... ...+.|.+++..+++++.++..++.|.+||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998888787777654 45678999988888877665567889999998754
Q ss_pred -eEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310 567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1103)
Q Consensus 567 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1103)
.+.....+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ..++..++|.|.
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 333333222 24566678999999999887 59999999999998877665432 245788888885
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.8e-27 Score=226.99 Aligned_cols=306 Identities=13% Similarity=0.198 Sum_probs=236.9
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1103)
Q Consensus 622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1103)
..++.+.+|+|||.++++|+.|..|+|+|++..-.... +.. +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence 45688999999999999999999999999874311100 000 0
Q ss_pred eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCe
Q 001310 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1103)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 781 (1103)
..+ .+....++....-.|..+|+.+.|.|....|++++.|+++++||+........ .+
T Consensus 154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------~K 211 (430)
T KOG0640|consen 154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------FK 211 (430)
T ss_pred ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------HH
Confidence 000 00000111111123889999999999999999999999999999876432100 00
Q ss_pred eecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC-CeEEEEEcCCceeeEEec---CCCCCeeEEEEcCCCCC
Q 001310 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN 857 (1103)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~ 857 (1103)
++ ....+|.++.|.|.|.+|++|.| .++++||+++.++...-. .|.+.|+++.+++ .++
T Consensus 212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 10 25678999999999999999987 789999999998876643 4778999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEecc-CCC-CEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310 858 VIAIGMDDSTILIYNARSSEVISKLEG-HSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~-~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1103)
+.++|+.||.|++||--+++++.++.. |.+ .|.+..|+.+|+++++.|.|..+++|++.++.......=....|...
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~- 353 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK- 353 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh-
Confidence 999999999999999999999988864 654 78899999999999999999999999999987544222111112111
Q ss_pred CCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 936 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
--+...|.....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+..+.||+.|..+|+|--
T Consensus 354 --~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 354 --HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred --hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 23456677778887773 45679999999999999889999999999999999999999999999999964
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1e-26 Score=260.93 Aligned_cols=284 Identities=17% Similarity=0.288 Sum_probs=249.0
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.|...+.+..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 367789999999 44 489999999999999999987754 177999999999999889999
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
++|+.|.+++|||..+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998877 78899999999987543 68899999999999999999999999999999999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eeEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1103)
..+ +.++++|+.|++|++||+.+.++...+.+|...|.++.+.+. ..+++++. +..|++||+.+. +++..
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 569999999999999999999999999999999999988776 88999887 566999999999 99999
Q ss_pred EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
+.+|. ..+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.++.+++||
T Consensus 409 l~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 66655544 5689999999999999999999999999874 23445666654 46899999999999999
Q ss_pred cCCCCeeEec
Q 001310 651 TPESNSVDAA 660 (1103)
Q Consensus 651 ~~~~~~~~~~ 660 (1103)
+.++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999777655
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=217.66 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=230.2
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC--CCceEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~i 469 (1103)
+..-.+.|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44567899999999999999999999999999999998766 6667778899999988877 5666665 889999
Q ss_pred EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
-++.+.+.++.|.||...|.+++.+|.+ ..+++++.|++|++||++..++...+.....++ .+|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997755 689999999999999999888887777666555 789999999999875
Q ss_pred CCCCceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC-c
Q 001310 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1103)
...|.+||++.- .+...+.-........+.+.|+|||+.++.+...+.+++.|.-+|..+.++..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 336999999853 344455443223468899999999999999999999999999999999888776543322 4
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccc-cccceeeeEEecC
Q 001310 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 675 (1103)
Q Consensus 627 ~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~ 675 (1103)
..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 788999999999999999999999999999998888 5778888888754
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.3e-27 Score=218.48 Aligned_cols=285 Identities=17% Similarity=0.247 Sum_probs=226.8
Q ss_pred ceEEEecC--CCceEEEEEcC-----CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-C
Q 001310 337 PMSMDFHP--VQHTLLLVGTN-----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1103)
Q Consensus 337 V~~v~~sp--dg~~llasgs~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g 408 (1103)
=.++.||| +++..+|++.. .|++.|-++..++.+.. +.-+ .-+..+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 36789999 44422333332 47899999865544432 1111 14578999999995 5
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
..+++++.||++++||+... -.++..++.|...|.++.|++-.++ .+++++-|++|++|+...++.++++.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999996543 3566678899999999999998776 67777999999999999999999999999999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-e
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-A 566 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~-~ 566 (1103)
....|+|. ...+++++|.|+++++||++.......+..|...+.++.|+.-.. .|++++. ++.|++||++.- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999987 457999999999999999999888888999999999999998555 4555543 778999999864 4
Q ss_pred eEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-eEEEEcCCCCCCCCceEEEec-CCCEEEEEECC
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 643 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d 643 (1103)
++..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...| ...+..+.||+ ++.++|+.+-|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence 566777777 899999999975 567789999999999998543 44555544 34577888887 67799999999
Q ss_pred CeEEEEEc
Q 001310 644 NRIKILET 651 (1103)
Q Consensus 644 g~i~iw~~ 651 (1103)
+.+.||+-
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999973
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-26 Score=246.46 Aligned_cols=280 Identities=18% Similarity=0.263 Sum_probs=241.1
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
...-+.||..+ +||+|.. ..|++|+..++..... ..-++..|+++.|+++|.+||+|.
T Consensus 179 Y~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~ 236 (484)
T KOG0305|consen 179 YLNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGT 236 (484)
T ss_pred hhhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEee
Confidence 34567888665 5677653 6899999999985543 122478999999999999999999
Q ss_pred CCCeEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE-eecCCCceEEEEe
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 493 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 493 (1103)
.+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|
T Consensus 237 ~~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred cCCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 99999999999877665 5667 99999999998 34 699999999999999998877655 8899999999999
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEe
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1103)
+ +++.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++ ..|++|++||..+|+.+..+.
T Consensus 310 s--~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 310 S--PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred C--CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccc
Confidence 5 4778999999999999999988899999999999999999999 5667777765 558899999999999988776
Q ss_pred cccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310 573 GLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
.. ..|..+.|++..+-+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|+
T Consensus 386 tg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 386 TG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 53 58999999999877777 5577899999999999999998774 4699999999999999999999999999
Q ss_pred cCCC
Q 001310 651 TPES 654 (1103)
Q Consensus 651 ~~~~ 654 (1103)
+-+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8764
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.7e-26 Score=259.92 Aligned_cols=305 Identities=17% Similarity=0.233 Sum_probs=237.4
Q ss_pred ccccEEEEEEecCCcEEEEee--cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310 733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 810 (1103)
+...|.++..+|+|..+++++ .||.+.||+...--. ....++..-...+.. ...|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~----m~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT----MDDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee----eccccCceeEEEE
Confidence 445689999999999999999 899999998654211 011122210111111 1149999999999
Q ss_pred ecCCCEEEEEcC-CeEEEEEcCC------------------ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310 811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1103)
Q Consensus 811 s~d~~~l~~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1103)
+|||++||+|+| +.|.||+... ++....+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6689998762 346778899999999999999 89999999999999999
Q ss_pred EcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1103)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 951 (1103)
+..+.+.+.++++|.+.|-.+.|.|-|++|||-+.|++|+||++.+..+.+ .+..+..+.........+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987744333 333333333333468899999999999
Q ss_pred EEE--eC---CeEEEEECCCceEEEEeeCCCCcCeEEEEEcc--------CC-----C----EEEEEecCCcEEEEeCCC
Q 001310 952 LLV--HE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 952 ~~~--~d---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~dg~v~vWd~~~ 1009 (1103)
++. .+ ..+.|.+-.+.+.-.. +.||..++..+.|+| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 983 22 3688888876666555 668999999999997 11 1 578999999999999876
Q ss_pred ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310 1010 LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
.+.+..+.. . .+..| ++++|+|| |..|.+++.||+|.+..+.+.+.
T Consensus 314 ~RPl~vi~~--l----------------f~~SI--~DmsWspd-G~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 314 PRPLFVIHN--L----------------FNKSI--VDMSWSPD-GFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCchhhhhh--h----------------hcCce--eeeeEcCC-CCeEEEEecCCeEEEEEcchHHh
Confidence 665533330 0 11112 68999999 89999999999999999866554
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=235.55 Aligned_cols=282 Identities=15% Similarity=0.206 Sum_probs=230.7
Q ss_pred ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
..+.|.+++|+|...+=++....-.+.+|+..... ....+ . .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~----------------------~~k~~--s--rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS----------------------VRKTF--S--RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh----------------------hhhhH--H--hhccceeEEEeec
Confidence 45789999999977665555555566666643221 11111 0 1467889999999
Q ss_pred CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1103)
Q Consensus 813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1103)
||+++|+|+ .|.|++||+++...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999998 4999999988877889999999999999999999999999999999999999999877789999999999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEE
Q 001310 892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970 (1103)
Q Consensus 892 l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~ 970 (1103)
.+|+|- +.+++|||.||+|++||+.... ........| .+|..+.|-|.|..+|++....|++||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999986 4589999999999999998743 122333222 3799999999999999999999999999976655
Q ss_pred EEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEEC
Q 001310 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAH 1050 (1103)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1050 (1103)
......|...|+|+++..|++.|++++-|+.|++||+.+.+.+-.+... ++| ++++-+
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--------------------~pv--Lsiavs 288 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--------------------GPV--LSIAVS 288 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc--------------------cce--eeEEec
Confidence 5545569999999999999999999999999999999999998888722 235 456666
Q ss_pred CCCCcEEEEEecCCcEEEEcc
Q 001310 1051 PLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1051 p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
|+ ++.++.|..+|.+.+=+.
T Consensus 289 ~d-d~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 289 PD-DQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CC-CceEEEecccceeeeehh
Confidence 76 789999999998887754
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.8e-26 Score=218.08 Aligned_cols=277 Identities=18% Similarity=0.242 Sum_probs=221.2
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 410 (1103)
...+.|.+++|||....+++.||-|++|++|+++. |..+. .....|.++|-+++|+.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 44679999999996666888999999999999987 34332 125569999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEE
Q 001310 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1103)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1103)
+++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+|||.|++|+.||.+...++.++. -.+.+++
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 999999999999999998533 46789999999999887665689999999999999999999988886 4566777
Q ss_pred EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-c-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--e
Q 001310 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--A 566 (1103)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~ 566 (1103)
+.. .-.+++.+..+..|.+|++++....... . .-.-.+.|++..+|....+.|+- +|++.+..+..+ +
T Consensus 162 ~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 162 ADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPK 233 (347)
T ss_pred hhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCcc
Confidence 754 2357899999999999999876544322 1 12336889999998888888876 555666666655 4
Q ss_pred eEEEEeccccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310 567 IKRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1103)
Q Consensus 567 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 640 (1103)
.-..|+.|... -..|++++|+|....|+++|.||++.+||-.....+...+.+ ..+|++.+|+.+|.+++.+
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence 44556666521 246888999999999999999999999999887777776655 4579999999999998866
Q ss_pred E
Q 001310 641 A 641 (1103)
Q Consensus 641 ~ 641 (1103)
.
T Consensus 312 ~ 312 (347)
T KOG0647|consen 312 L 312 (347)
T ss_pred e
Confidence 4
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=6.9e-26 Score=212.92 Aligned_cols=254 Identities=16% Similarity=0.242 Sum_probs=214.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|...|.+++|+.+|.+||+|+.|+++.+|++...+... .....+|.+.|-.++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 66799999999999999999999999999999999875433 3357799999999999997766 799999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+.++++...+....+.+. ++| +++|.+++.++.|..|.+.|.++.+...... ....+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEec---
Confidence 999999998876555554 344 5678899999999999999988766554333 223567788988888777664
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
|.|.|.|.....-+.+..++.|. ....|+.|+|+|+++++|+.|-.+.+||++.--+++.+.... -+|..++||
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 36779999999999999999988 888999999999999999999999999999988888887553 469999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeEec
Q 001310 632 KNGTLLAVIANENRIKILETPESNSVDAA 660 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1103)
.||++||++++|..|-|=++++|..+..+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEe
Confidence 99999999999999999988888655444
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=233.35 Aligned_cols=293 Identities=14% Similarity=0.197 Sum_probs=237.4
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEee----ccccccceeeeeccCCCccEEEE
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
.+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|. ++....+++..- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 466778888999999999999 589999999999999999985521 111 111233344332 4899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988766 6889999999999987666 69999999999999999999999999
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+|.+.|.++.... -+..+..|+.|+++++|++ ....+..+.++...+.|++|-.+. .+++|+. +|.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999997643 3345566669999999999 455667778888899999997654 5667765 667999999
Q ss_pred CCCeeEEEEeccc-c--------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCCCCCCceEE
Q 001310 563 SEGAIKRTYQGLQ-L--------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 563 ~~~~~~~~~~~~~-~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1103)
.+.+++......+ . +...|++++..|..+.+++|+.+|.|++|-+..+ +++..++.. ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 9998877665322 1 1127999999999999999999999999999887 444555533 4589999
Q ss_pred EecCCCEEEEEE
Q 001310 630 FNKNGTLLAVIA 641 (1103)
Q Consensus 630 ~s~~g~~l~~~~ 641 (1103)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776663
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=238.19 Aligned_cols=309 Identities=18% Similarity=0.230 Sum_probs=242.0
Q ss_pred cCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
..+|..+-..|.+|+..|+++++.|.|.+ +++|+.|.+|++||+........ .| ..+.......|
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~f-------------r~l~P~E~h~i 217 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SF-------------RQLQPCETHQI 217 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hh-------------hccCccccccc
Confidence 44688888899999999999999999996 89999999999999976432211 11 12244566789
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCc---------cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+++||+.|..|++.+....++|+|-.+-+. +.-...-+||...++|.+|.|+.+. .++|++.||++|||
T Consensus 218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIW 296 (641)
T ss_pred ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEE
Confidence 9999999999999998888899999765332 3333445799999999999999988 79999999999999
Q ss_pred eCCCCce-eEEee-----cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCc--cEEEEEEcc
Q 001310 471 DAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYSA 539 (1103)
Q Consensus 471 d~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--~i~~~~~s~ 539 (1103)
|+...+. +..++ +..-++++++| ++++.+|++|..||.|.+|+........ .-..|.. .|+|++||+
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 9986543 33332 23446777888 5578899999999999999975543322 2334444 899999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCee
Q 001310 540 NGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQL 612 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~ 612 (1103)
||++|++-+. +..+.+||++.. +++....+.. ....-+.++|+|+.+.|++|. ..|++.+||..+.+.
T Consensus 375 dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 375 DGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred ccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 9999998765 667999999865 3444444433 224567789999999999975 457899999999999
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
+..+... ...|..+.|+|.-+.+.+++.||.+++|--.+
T Consensus 450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 9998876 35688999999999999999999999985543
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=217.13 Aligned_cols=240 Identities=19% Similarity=0.275 Sum_probs=206.5
Q ss_pred CCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001310 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 799 ~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~ 875 (1103)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 369999999998 689999998 89999999999999999999999999999998 544 899999999999999999
Q ss_pred ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe
Q 001310 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1103)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~ 955 (1103)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+.-....+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999987444323222 235699999999999999
Q ss_pred CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEe
Q 001310 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035 (1103)
Q Consensus 956 d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1103)
...|-+|.+++......... ...+.++.| -++..|++|+.|+.|.+||.+++...+.+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~------------------ 246 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL------------------ 246 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeee-cCCceEEEecCCceEEEeccCCCccceeee------------------
Confidence 99999999987766654332 345667776 456789999999999999999877776666
Q ss_pred eccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 1036 YCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 1036 ~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
+|.++|..+..--.|+ +.+|++++.||.|+|||+..
T Consensus 247 -AH~~RVK~i~~~~~~~-~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 247 -AHENRVKDIASYTNPE-HEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred -cchhheeeeEEEecCC-ceEEEEeccCceEEEEEccc
Confidence 7889999877666777 89999999999999999953
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.4e-25 Score=247.12 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.6
Q ss_pred ccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCCCc-c----ccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986432 1 123357899999999999999874 568999999
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEE-----EEEccC
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 540 (1103)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.+ ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999965 6789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
+.++++++.++..++.|++||++. ++.+..+..+. ..+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655556899999985 55555543322 12334444445568888999999999999998764 3334333
Q ss_pred CCCCCCceEEEecCC
Q 001310 620 GGLPENPRICFNKNG 634 (1103)
Q Consensus 620 ~~~~~v~~v~~s~~g 634 (1103)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 344567889999964
No 94
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6e-26 Score=224.67 Aligned_cols=281 Identities=15% Similarity=0.205 Sum_probs=233.4
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeC
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
-|...|.++... ++.|++|+.||.+++||..+. ... .+.||.++|.+++|.- +...-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388899999888 899999999999999999864 232 6789999999888743 322225999999999999998
Q ss_pred CCCcee----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-------------------------CCCeeE
Q 001310 473 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 523 (1103)
Q Consensus 473 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------------------~~~~~~ 523 (1103)
+.++.. ..-.||...|.++.. .+++..+++|+.|.+|++|+.. ++.+..
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 877543 344599999999987 4577899999999999999832 122345
Q ss_pred EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1103)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 603 (1103)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+..+.+. ..+.++..+|..+.|++|+.|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788999999999988 667777775 778999999999998888874 4899999999999999999999999
Q ss_pred EEECCCCe---eEEEEcCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCCC-eeEeccccccceeeeEEecCCce
Q 001310 604 IWDMNKVQ---LLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 678 (1103)
Q Consensus 604 iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 678 (1103)
+||.+++. ...++.+| ...|.++.|+|. ..+|++++.|+++++||+.+.. ++..+.+|.+.|.++.++
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 99998764 23445544 557999999995 5578899999999999999887 899999999999999987
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
++..+++|+.|.+++++...
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------------------CCceEEeccCcceEEEeccc
Confidence 67889999999999998643
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-26 Score=249.65 Aligned_cols=278 Identities=14% Similarity=0.176 Sum_probs=212.8
Q ss_pred cccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc------c---------ccc----------ccc---------cc
Q 001310 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T---------LST----------EAT---------TK 777 (1103)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~---------~~~----------~~~---------~~ 777 (1103)
.|.+.|.++.||+||++|++++.||.|+||.+..... . ..+ ... ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999977211 0 000 000 00
Q ss_pred cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC
Q 001310 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1103)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1103)
.+..+.+.....-....-....||...|..+.||.++-+|-+.-|.+|++|++...+++..|. |...|||++|+|-|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 000001100000000000113379999999999998655444449999999999999999997 9999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1103)
|+++|+-||.|+||++...+.+.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+......
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999999999999999987766555544 789999999999999999999999999999988777666665555444444
Q ss_pred CceEEEEcCCCC--EEEEEeCCeEEEEECCCceEEEEeeCCCC-cCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 938 SETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPISS-VPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 938 ~v~~l~fs~dg~--~l~~~~d~~v~iwd~~~~~~~~~~~~~h~-~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
.|+.+.|.|... .|+++.|.+|+|||..+...+..+...|+ ..-....|+.||++|+++++|..|++|+++...
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 799999998654 77788999999999988787777443342 333567899999999999999999999986544
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=217.15 Aligned_cols=311 Identities=13% Similarity=0.164 Sum_probs=235.2
Q ss_pred eEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccccc
Q 001310 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1103)
Q Consensus 657 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 736 (1103)
+..+++|...|++++|+ .||+.+++++.|++|++|++..-...+.+.++..- ..+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCC
Confidence 34678999999999997 79999999999999999998753332222222211 2246
Q ss_pred EEEEEEecCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310 737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1103)
Q Consensus 737 i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 815 (1103)
.+.++|+||-+.+++... ...+++|.+...+- |...- +.--||... + ...|.-.+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f-~~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------F-ERKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------c-chhcccceEEEeecCCce
Confidence 788999999887766655 46889998754321 11110 111122100 1 113677788888889999
Q ss_pred EEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c-----eeEEEeccCC
Q 001310 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS 886 (1103)
Q Consensus 816 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~ 886 (1103)
+|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++..-.|++|..-- | ..+..++||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 999998887777778899999 999999999999999998742 2 2356789999
Q ss_pred CCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee--eeeeeecCCCcc-cCCCCceEEEEcCCCCEEEEEeCCeEEEEE
Q 001310 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1103)
Q Consensus 887 ~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd 963 (1103)
..|..++||++...++|.|.||+++|||.+-.... ....++...... ...+....+++||.|+.||++....+.+|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999998752211 111222221110 111345689999999999999999999999
Q ss_pred CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
.++|+....+...|+..|++++|++||++++|++ |..+++..-.
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 9999998888888999999999999999999986 7889887633
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=230.89 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=240.7
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 233346788889999999999999 799999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+...+...++.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..++. ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986443 349999999999999999866655433 22344445544 445666655
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC--CCCCceEE
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1103)
+..|+.||.++.........+ +.|+++..++++..+++.+.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 556999999999998888874 4899999999999999999999999999999988888865432 23478899
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccc--eeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
|||++.|+++|+.||.|+||++.++++...+...... |++++|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999988887766555 8989887 568888999999
Q ss_pred ccccccc
Q 001310 708 NKSEVEK 714 (1103)
Q Consensus 708 ~~i~~w~ 714 (1103)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9998883
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.6e-25 Score=236.87 Aligned_cols=284 Identities=18% Similarity=0.298 Sum_probs=241.2
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE-EE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~ 403 (1103)
.+.+.|.||...|..+++.+.. .++++|.||++++|+-..++-+.+. .+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence 4668899999999999988876 4789999999999998766655432 25678888877 88
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
+-+ |+-.|++|+.|++|.+|...+...+. .+.||...|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 875 66679999999999999999886555 7899999999999877775 99999999999994 577788899
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+|...|++++..+.. .+++|+.|.+|++|. .++...++.+|..-|..+++-+++.++ +|+. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFL-SCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeE-eecC----CceEEEEec
Confidence 999999999886543 899999999999994 477888999999999999999887655 5544 778999998
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
+|+.+..+.+|. .-+.++....++..++++++|++++||+.. ++.+.+..++. .++++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999998 899999988888899999999999999976 77788876643 488898888885 778888
Q ss_pred CCeEEEEEcCCC
Q 001310 643 ENRIKILETPES 654 (1103)
Q Consensus 643 dg~i~iw~~~~~ 654 (1103)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999988754
No 99
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.1e-24 Score=245.07 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=211.2
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc----------ccceEeccccccEEEEEEec-CCCceEEEEEcC
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~ 463 (1103)
|-..|.....++|+..+++++.+..+..|+..++..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3456666777888777778777777777876554321 11224779999999999999 777 8999999
Q ss_pred CCceEEEeCCCC-------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1103)
Q Consensus 464 d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1103)
|++|++||+.++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCe-
Q 001310 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~- 611 (1103)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999876 6679999999999998888876 23355678899888888754 47999999998754
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccc-cccceeeeEEec
Q 001310 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1103)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~ 674 (1103)
.+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333322 23455677899999999887 599999999998876655433 233455555554
No 100
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3e-23 Score=228.61 Aligned_cols=526 Identities=12% Similarity=0.113 Sum_probs=335.4
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCc-eEEEEEcCCCceEEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iw 470 (1103)
+.|-...-..-.||+|++++.....+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 44444444556799999999887554 69999999999887 78899999999999887664 478899999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeee------------cCCccEEEEEECC--CeEEEEEcCCCCee-EEecCCCccEEEE
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGAR-VDYDAPGLGCTRM 535 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~l~s~~~d--g~i~iwd~~~~~~~-~~~~~~~~~i~~~ 535 (1103)
|...+..+.++..+.. +.++.+.+ ..+-..+.+.+.+ +.++-+.+.+.... ..+......-.++
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9999999988864432 22222210 1111111111111 11111111111000 0011111113567
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE-EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cee
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 612 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~ 612 (1103)
.+++.|.+...+. +..+.+|+..++..... ...+..|...+++.+++|+++++++|..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877776 34488999887652111 111222335589999999999999999999999996433 222
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1103)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1103)
...-..|-|...|.+++|+++|.+|++|+..+.+.+|.+.+++.. -+.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP------------------------------- 289 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP------------------------------- 289 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc-------------------------------
Confidence 222223344567999999999999999999999999999887411 111
Q ss_pred CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1103)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 772 (1103)
.-...|..+.+|||+...+....|+.|.+-........
T Consensus 290 ---------------------------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--- 327 (792)
T KOG1963|consen 290 ---------------------------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--- 327 (792)
T ss_pred ---------------------------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---
Confidence 03467888999999999888888988888765432210
Q ss_pred ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEE-EcCCeEEEEEcCCceeeEEec-----CCC---
Q 001310 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS-ASGGVISLYIVMTFKTILTIM-----PPS--- 843 (1103)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~dg~i~iwd~~~~~~~~~~~-----~~~--- 843 (1103)
.++.-..+.+.. . ......-.+.++++|--+.++- +-.|.|++||+.+.+.+..+. .+.
T Consensus 328 -----~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 328 -----STISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred -----hhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 011111111000 0 0013445567888884444444 447999999998877666543 112
Q ss_pred ---CCeeEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCcee----EEE-eccCCCCEEEEEEcc-CCC-EEEE
Q 001310 844 ---PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----ISK-LEGHSKRVTGLVFSD-ALN-ILVS 903 (1103)
Q Consensus 844 ---~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~~-l~~h~~~V~~l~~s~-dg~-~l~s 903 (1103)
-.+++++.+. .|.+++++- .|| .+++|-...... ... ...|...+.+.+|.+ ... .+++
T Consensus 396 n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 396 NIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred eeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 2578888888 699999863 233 678897765432 222 235887777766654 333 7999
Q ss_pred EeCCCeEEEEEcCCCceee-----eeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCC
Q 001310 904 SGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS 978 (1103)
Q Consensus 904 ~s~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~ 978 (1103)
++.||.++||-+.+.+... ..+.....-|. .++.+++||.||..|+++.++.|.+||..+...+........
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence 9999999999985432111 11222221122 378999999999999999999999999998433322233334
Q ss_pred cCeEEEEEccCC--CEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 979 VPISQATFSCDC--RMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 979 ~~v~~l~fs~dg--~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.++..+.|.... ...++....+.+.+|++-++.+.-.+.
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s 592 (792)
T KOG1963|consen 552 WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNLS 592 (792)
T ss_pred cchHhHhhhcccccccceeeccCceEehHhhhhhheecchh
Confidence 455555554321 112333456889999999988776333
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2e-25 Score=250.47 Aligned_cols=279 Identities=17% Similarity=0.243 Sum_probs=241.9
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
|...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56778888888 77899999999999999999875552 3889999999999987555 899999999999999999
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
|+|..++.+|...|.++.. ...++++|+.|.+|++|++.++.....+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 34578899999999999999999999999999999999988 889999987 5
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCCCCceEEEecC
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 633 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 633 (1103)
+.|.+||+.++++++.+.+|. ..|.++.+... +++++|+.|++|++||+.++ +++.++..|... +..+. ..
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l~--~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSLL--LR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccccc--cc
Confidence 579999999999999999988 99999988765 89999999999999999999 899999887543 43333 45
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeEeccc-cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310 634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1103)
Q Consensus 634 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1103)
+++|++++.|++|++||..++++++.+.+ +...+..+++. ...+++++.|+++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 78999999999999999999999999988 45666555443 355788899999999
Q ss_pred ccccccCCc
Q 001310 713 EKPLFARPS 721 (1103)
Q Consensus 713 w~~~~~~~~ 721 (1103)
||+..+...
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998865443
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=237.19 Aligned_cols=295 Identities=18% Similarity=0.213 Sum_probs=238.0
Q ss_pred cCCcCce---EEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 332 ~h~~~V~---~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
.|...|. ++..++.+.++|.+|+.||.|++|++........ .+ ....+..|...|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence 4555666 5666655555799999999999999865433211 00 011266799999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEE-ecCCCceEEEEEcCCCceEEEeCCCCc--eeEE-----
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTYS----- 480 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~----- 480 (1103)
+.|+++|.|.+|++|+...+. .....+++.|.+.|.|++. .++.. ++|+||-|+.|.+||+++|. .+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999998874 1222367899999999999 66666 89999999999999999883 3322
Q ss_pred ---ee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1103)
Q Consensus 481 ---~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1103)
+. |+...|++++.+ +.|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 22 788899999984 46689999999999999999999999999999999999999999999999986 778
Q ss_pred EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001310 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1103)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 636 (1103)
|++||+...+++.++..|. ..|.++..+|+-.++++|+.||.|+.=|+.+......+-.. ..+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCC
Confidence 9999999999999999988 77999999999999999999999999999885333222211 234667777755555
Q ss_pred EEEEECCCeEEEEEcCC
Q 001310 637 LAVIANENRIKILETPE 653 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~ 653 (1103)
+-+++.|+.|+-|....
T Consensus 312 ~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceeeeccccceecCCcc
Confidence 57788889999997663
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.7e-25 Score=211.33 Aligned_cols=276 Identities=16% Similarity=0.165 Sum_probs=218.1
Q ss_pred ccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 392 ~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
-...++.|.+++||| ...++++++.|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 556666889999999999987432222 24567999999999999998 79999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
|+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|++||.+......++..++ .+.++. --...++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~D--v~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAAD--VLYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehh--ccCceeEEEec-
Confidence 999994 5667789999999999877777799999999999999999888877776554 333332 23345555554
Q ss_pred CCCceeEEEEeCCCCeeE-EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEEcCCCC------
Q 001310 551 KEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGG------ 621 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~------ 621 (1103)
+..|.+|+++.+... +.....- +..+++++...+....+.|+-+|.+.|..++.+. .-.++..|..
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 455999999765432 2222222 3578999999998888999999999999988763 3334444432
Q ss_pred -CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceee
Q 001310 622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1103)
Q Consensus 622 -~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 680 (1103)
...|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..|...+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 34578999999999999999999999999998888888899999999999997776654
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=226.82 Aligned_cols=294 Identities=11% Similarity=0.154 Sum_probs=233.9
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
.+-+..|.||.++|.|++=+|..-..+|+|+.||.|+|||+.+..++.+ +..|.+.|..++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4455677999999999999998844689999999999999999888876 667999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
+.. ..+++++.|.+|+.|.+... ...++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~----p~~tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP----PLHTILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC----cceeeec-cccccccccccccc--cccccCc--eeeecccccCCccceeec
Confidence 987 77888899999999998863 2223332 23455666555555 6888887 499999999999999988
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
....|.++.|+|... ..|++++.|+.|.+||++.......... ....+.++|+|.+-.++++.. |..++.+|++
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhh
Confidence 889999999988644 5888899999999999998877654432 224567899996666666543 6779999987
Q ss_pred CC-eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
.- +.+..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence 53 3455555555 9999999999999999999999999999987765433321 22346899999999999999999
Q ss_pred CCeEEEEEcCCCCee
Q 001310 643 ENRIKILETPESNSV 657 (1103)
Q Consensus 643 dg~i~iw~~~~~~~~ 657 (1103)
|+.|++|.....+.+
T Consensus 336 d~nvRlWka~Asekl 350 (433)
T KOG0268|consen 336 DGNVRLWKAKASEKL 350 (433)
T ss_pred Ccceeeeecchhhhc
Confidence 999999988755443
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-25 Score=236.90 Aligned_cols=252 Identities=19% Similarity=0.305 Sum_probs=220.8
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccC-CCccEEEEEE
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVW 404 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~ 404 (1103)
+......+.+.|+++.|+++|+ +||+|..+|.|.|||..+.+.+.. +.+ |...|.+++|
T Consensus 209 v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 209 VTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAW 268 (484)
T ss_pred eEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEec
Confidence 3333344488999999999999 699999999999999998887765 556 9999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
. +..+.+|+.++.|..+|+...+.... .+.+|...|..++|++|+. ++++|+.|+.+.|||.....++..+..|
T Consensus 269 ~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H 342 (484)
T KOG0305|consen 269 N--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEH 342 (484)
T ss_pred c--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEecc
Confidence 8 78899999999999999998875543 3789999999999999999 8999999999999999888999999999
Q ss_pred CCceEEEEeeecCCccEEEEE--ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 485 GAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
.+.|.+++|+|-.. .+||+| +.|++|++||..++....... .+..|.++.|++..+-++++... .+..|.||+.
T Consensus 343 ~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~--s~n~i~lw~~ 418 (484)
T KOG0305|consen 343 TAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY--SENQITLWKY 418 (484)
T ss_pred ceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC--CCCcEEEEec
Confidence 99999999998755 478876 579999999999776655443 55689999999999888887653 3557999999
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 610 (1103)
.+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++-..
T Consensus 419 ps~~~~~~l~gH~---~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 419 PSMKLVAELLGHT---SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cccceeeeecCCc---ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999 88999999999999999999999999998764
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=215.06 Aligned_cols=297 Identities=14% Similarity=0.187 Sum_probs=243.1
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
..+.+.|.||+++||.++...... ++.+++.|.+.+||.+++|.++.+ +.||.+.|.+++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 356678899999999999987776 899999999999999999999986 889999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEec------C--------C-----------------------CccccceEeccccccEEE
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYH------G--------G-----------------------SDARQQLEIDAHVGNVND 446 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~------~--------~-----------------------~~~~~~~~l~~h~~~v~~ 446 (1103)
|++.+.++++++.|++..||... . + ....+...+.+|...|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99999999999999999999721 1 0 001124467899999999
Q ss_pred EEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC-eeEEe
Q 001310 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDY 525 (1103)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~ 525 (1103)
+.|...|+ .+++++.|.+..+||+++|..+..+.||....+.++-+| ...++++.+.|-+.++||++..- ....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 699999999999999999999999999999999998876 44799999999999999998543 34478
Q ss_pred cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001310 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1103)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 604 (1103)
.+|...|+++.|..|.+ +++++. +.+|.+||+++.+ .+..+... .+++.++.+..++.++.--++..|++
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEE
Confidence 99999999999988765 556553 7789999998754 45555542 58889999888888888888899999
Q ss_pred EECCCCeeEEEEc---CCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCC
Q 001310 605 WDMNKVQLLTTID---AGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 654 (1103)
Q Consensus 605 wd~~~~~~~~~~~---~~~~~~~v~~v~~s~~g--~~l~~~~~dg~i~iw~~~~~ 654 (1103)
||+..... ..++ ..++...|.|++|..+. .-|++++-|..+.-|.+...
T Consensus 425 fDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 425 FDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99975443 3332 22344568899998653 34778888999999987643
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=237.77 Aligned_cols=250 Identities=21% Similarity=0.251 Sum_probs=212.1
Q ss_pred CCccEE---EEEEC-CCCCEEEEEeCCCeEEEEEecCCCcc---ccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 395 PGVSVN---RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 395 h~~~V~---~~~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
|...|. ++..+ |.++||.+|+.||.|++|++...... .....+..|...|+.++...+++ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444454 44555 46788999999999999998754321 12446788999999999999998 79999999999
Q ss_pred EEEeCCCC--ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eE--------Eec-CCCccEEE
Q 001310 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTR 534 (1103)
Q Consensus 468 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~ 534 (1103)
++|+...+ -++.++..|.+.|.++++. ..+...+++|+.|+.|.+||+.++.. .. .+. ++...|.+
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 99999887 6888999999999999984 33567999999999999999997633 11 122 56668999
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 001310 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1103)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (1103)
++.++.|..+++|+. ++.|++||.++++.+..++||. ..|..+..++||++++++|.||+|++||+...+++.
T Consensus 177 LA~N~t~t~ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred eecCCcceEEEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 999999988888876 4459999999999999999998 999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1103)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 656 (1103)
++..|.. .|+++..+|+-..+++|+.||.|..=|+.+...
T Consensus 250 T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 250 TYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 9988855 489999999999999999999999988887533
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=218.12 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=244.5
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
...+.++...|... .+.+|+.|..+.++|..+++.+.. ++||...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 34788888888844 689999999999999999988865 8899999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC--CCceEEE
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSL 491 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~ 491 (1103)
++.|..|+||......... ....|..+|+.+...|.|. +|++++.|++..+.|+++|.++...... .-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998765433 5678999999999999999 8999999999999999999998776542 3457888
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
+||| ||.++.+|..||.++|||+.+......+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+..+++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8976 7789999999999999999999988999999999999999999999999986 555999999998888888
Q ss_pred ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 649 (1103)
.... ...+.++.|.+.|.+++.++.|=.|++++-.+. .++..+..+ ....+++.|....+++++++.|..++++
T Consensus 428 ~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 428 QLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEe
Confidence 7766 457999999999999999988777777775544 444444444 3457899999999999999999998887
Q ss_pred Ec
Q 001310 650 ET 651 (1103)
Q Consensus 650 ~~ 651 (1103)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 54
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=228.07 Aligned_cols=292 Identities=14% Similarity=0.273 Sum_probs=218.8
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc-cccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1103)
+.+|+..|.++++.|.|.+|++|+.|.+|++||+..-.. .+.+..+. .....|.++.|++.|.++++++| ...++|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqakl 240 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAKL 240 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--CcceeE
Confidence 788999999999999999999999999999999976432 11111221 23346999999999996444444 557899
Q ss_pred EeCCCCceeE-------------EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-c-----CCCc
Q 001310 470 WDAVTGSRTY-------------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-----APGL 530 (1103)
Q Consensus 470 wd~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-----~~~~ 530 (1103)
+| +.|..+. .-+||...+++.+|+|... ..+++++.||++|+||+.+.+..... . +..-
T Consensus 241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99 4454332 2357999999999998754 57899999999999999876654422 1 2223
Q ss_pred cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE--EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
+++.++|++||+.+|++.. +|.|.+|+......- ..+...+.....|+++.|+++|++|++-+.|+++++||++
T Consensus 319 ~~tsC~~nrdg~~iAagc~----DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCL----DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CceeeecCCCcchhhhccc----CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 6899999999999998876 666999997544322 2222222123489999999999999999999999999998
Q ss_pred CC-eeEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeee
Q 001310 609 KV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1103)
Q Consensus 609 ~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 681 (1103)
.. +++.....-.....-..++|||+.+++++|+. .|.+.+||..+-..+..+......|..+.|+
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh-------- 466 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH-------- 466 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec--------
Confidence 75 34444433333345678999999999999864 4789999999988888888888888888887
Q ss_pred eccCCceEecCCCCCCCccceeeccccccccc
Q 001310 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVE 713 (1103)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w 713 (1103)
|.-+.++.++.||+++++
T Consensus 467 --------------pkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 467 --------------PKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred --------------chhhheeeecCCCceEEE
Confidence 445556667777777664
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.8e-24 Score=193.40 Aligned_cols=299 Identities=15% Similarity=0.209 Sum_probs=233.0
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEec------CCCc--cc----cceEeccccccEEEEEEecCCCceEEEE
Q 001310 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------GGSD--AR----QQLEIDAHVGNVNDLAFSAPCKQISVIT 460 (1103)
Q Consensus 393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~------~~~~--~~----~~~~l~~h~~~v~~~~~s~d~~~~~l~s 460 (1103)
-..+..|.+++|+|.|.+.|+|++..+.+|--.. .+.. .. ....-+.|.+.|.|.+|+|+|+ ++++
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat 106 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT 106 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence 3467789999999999999999999998876432 1111 01 1123356899999999999999 9999
Q ss_pred EcCCCceEEEeCCCCcee-----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310 461 CGDDKTIKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1103)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1103)
|++|++|++.-.+...+. ..+.-|.+.|..++|...+
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-------------------------------------- 148 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-------------------------------------- 148 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC--------------------------------------
Confidence 999999999765543332 2344566666666653221
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 615 (1103)
...|..|++++ .++..|++-|..+|+..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-..++.+
T Consensus 149 --~s~~~il~s~g---agdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~ 219 (350)
T KOG0641|consen 149 --ESGGAILASAG---AGDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT 219 (350)
T ss_pred --CcCceEEEecC---CCcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee
Confidence 12344566655 357889999999999999999998 666655 334678899999999999999999888887
Q ss_pred EcCCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310 616 IDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1103)
Q Consensus 616 ~~~~~~-----~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 690 (1103)
+....+ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|+
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs----------------- 282 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS----------------- 282 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-----------------
Confidence 753321 2468899999999999999999999999999999999999999999999997
Q ss_pred cCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecC
Q 001310 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1103)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~ 764 (1103)
|...++++++.|..|++-|+...-..+...+... .|...+..+.|.|..-.+++.+.|.++.+|.++
T Consensus 283 -----p~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 283 -----PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -----CCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6778899999999999999875433333333333 388889999999999999999999999999754
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.6e-25 Score=221.88 Aligned_cols=250 Identities=22% Similarity=0.287 Sum_probs=212.8
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcccc--------------ceEe-ccccccEEEEEEecCCCce
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--------------QLEI-DAHVGNVNDLAFSAPCKQI 456 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~--------------~~~l-~~h~~~v~~~~~s~d~~~~ 456 (1103)
...|.-+|.+++++||+++..+++.+++|.=|++.+|...+. ...- .+|...|.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 557999999999999999999999999999999998864311 0011 37888999999999999
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1103)
+|++|+.|..|.|||..+.+.++.+++|.+.|.+++|.. ....+++++.|+.|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999964 445799999999999999999888889999999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 616 (1103)
...-++.+-+++. |.++++|++.. +....+.++. +.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888877766 66799999944 3334566666 78999999754 68999999999999999999888766
Q ss_pred cCCCCC----------CCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 617 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 617 ~~~~~~----------~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
....+. ..|++++..|...++++|+.+|.|++|.+.++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 432111 15778999999999999999999999998876
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=218.24 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=241.2
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1103)
..+.++...|....+++|+.|.++.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987666 7899999999999999998 79999999999999998888
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC--CccEEEEEEccCCCEEEEEecCCCCc
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
+......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999976 5579999999999999999998887655543 346899999999999998876 7
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 634 (1103)
+.+.+||+.++..+..|.+|. ++|..++|+.+|-+++++++|+.|++||++.-+..+++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 779999999999999999988 99999999999999999999999999999999988888877654 78999999999
Q ss_pred CEEEEEECCCeEEEEEcCCC--CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310 635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1103)
.+|+.++.+=.|++++-.+. ..+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 99999988766666664443 4455555666666666665 55677888888877666
Q ss_pred cc
Q 001310 713 EK 714 (1103)
Q Consensus 713 w~ 714 (1103)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 53
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.1e-26 Score=222.53 Aligned_cols=285 Identities=14% Similarity=0.224 Sum_probs=235.1
Q ss_pred EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEE
Q 001310 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1103)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1103)
.|.||.+.|.|++=.|..-. .+++|+.||.|+|||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998632 699999999999999999999999999999999999954 5799999999999998
Q ss_pred cCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1103)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1103)
++.. ...++. ....+..+.-+..+..+++|+. .|.|||.....+++.+.-.. ..|.++.|+|....++.
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222322 2334556666667778888864 39999999888998888766 78999999998766554
Q ss_pred -EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeEeccccccceeeeEEe
Q 001310 596 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1103)
Q Consensus 596 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~ 673 (1103)
++.|+.|.+||++.+.+++.+...-. -+.++|+|++-.+++|++|..++.+|+... .++....+|...+..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 66999999999999999988765533 478999998888999999999999999865 5677788888888888886
Q ss_pred cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEee
Q 001310 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753 (1103)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 753 (1103)
|-|+-+++|+.|.+||+|....+........ .....|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYht-----kRMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-----KRMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhH-----hhhheeeEEEEeccccEEEecC
Confidence 6788899999999999999875544433221 1456789999999999999999
Q ss_pred cCceEEEeecCCC
Q 001310 754 SNGVHLMWRWPRN 766 (1103)
Q Consensus 754 ~dg~i~vw~~~~~ 766 (1103)
.|+.|++|.-...
T Consensus 335 dd~nvRlWka~As 347 (433)
T KOG0268|consen 335 DDGNVRLWKAKAS 347 (433)
T ss_pred CCcceeeeecchh
Confidence 9999999986543
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.2e-24 Score=204.28 Aligned_cols=244 Identities=17% Similarity=0.247 Sum_probs=204.2
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+..|.++|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 377899999999996 9999999999999999999876555 67789999999999988642259999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
+.....++.++++|.+.|+.++++|++ .+.++.+.|+.++.||+-.++.-........ .+.+.|+|.|.+++.++.
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~- 188 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGR- 188 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEec-
Confidence 999999999999999999999998854 7889999999999999998887666554433 334899999999888874
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
..|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|. ..|..+.+
T Consensus 189 ----~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~ 257 (362)
T KOG0294|consen 189 ----NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIAS 257 (362)
T ss_pred ----cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEE
Confidence 34899998877665555443 246666664 56789999999999999999988888888774 45777774
Q ss_pred --ecCCCEEEEEECCCeEEEEEcCCC
Q 001310 631 --NKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 631 --s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
.|++.+|++++.||.|++||+...
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999865
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.9e-23 Score=202.13 Aligned_cols=270 Identities=20% Similarity=0.272 Sum_probs=214.4
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
.+.|+.|.|+|.+.. |++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 579999999999885 56667999999999988754432 23899999999997 567889
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1103)
|+.||.|+.+|+.++... .+..|..+|.|+.+++... .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 3678999999999998766 79999999999999988766655554 3347888865
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecC--CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC----ee
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 567 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~----~~ 567 (1103)
.+..|+.|+.|..+.+||+++.....+... -.-.+.++++-|++.-.++++- +|+|.+=.+... ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 556899999999999999998776553322 2337899999998887887766 444554333333 33
Q ss_pred EEEEecccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 568 KRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 568 ~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
...|+.|.. ...+|++++|+|-...+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 344555542 1257999999999999999999999999999999888887654 23589999999999999997
Q ss_pred C
Q 001310 642 N 642 (1103)
Q Consensus 642 ~ 642 (1103)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 6
No 116
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-24 Score=203.41 Aligned_cols=244 Identities=15% Similarity=0.264 Sum_probs=201.5
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLG 412 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~la 412 (1103)
.+.+..++||++....+++++.||+++|||+.-... +...++.|...|.++.|++ +++.++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccccceeEE
Confidence 568999999998887899999999999999543221 1122788999999999999 667788
Q ss_pred EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEE
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1103)
+++.|++|++|+..-+..+. ++.||...|...+|+|.... ++++++.|+++++||++..-....+..|...+.++.
T Consensus 122 tsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD 197 (311)
T ss_pred eeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence 88999999999998876555 78999999999999998766 899999999999999986555555999999999999
Q ss_pred eeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCe-eEE
Q 001310 493 PHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGA-IKR 569 (1103)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~-~~~ 569 (1103)
|+.. +...+++|+.|+.|+.||++..+. ...+.+|+-.|..+.|||... .|++++. |-++++||...+. .+.
T Consensus 198 w~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 198 WSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPERQDSAIE 272 (311)
T ss_pred cccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccccchhhhh
Confidence 9754 557999999999999999988654 557888999999999999654 5666665 7789999988543 444
Q ss_pred EEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001310 570 TYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 607 (1103)
+...|. .-+..+.|++- +.++++.+.|+.++||+.
T Consensus 273 ~~~~Ht---EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHT---EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccc---eEEeccccccccCceeeecccccceeeecc
Confidence 555555 77888888874 568888999999999984
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.6e-21 Score=209.82 Aligned_cols=279 Identities=16% Similarity=0.217 Sum_probs=226.4
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC-CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
..|+.+-+.++|.|+|. ++.+++.||.|++|+..+. +...+ ..-++..|.+++- ++.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--ccc
Confidence 47888999999999999 7889999999999998776 32221 2226677777665 456
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1103)
+|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999886433 3445667899999999999 899999999999999999999999999999999
Q ss_pred EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC--------CccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1103)
++.++| ++.+|++.+.||.|++|+++++.....+..- ...+..++|+|+|..+++... ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999965 6689999999999999999988776654332 235678999999766666654 66799999
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
..+++....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-.. |.....|.+++|.|+.+.+-...
T Consensus 217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 9999988888765522 3499999999999999999999999999998222 33345689999999988776666
Q ss_pred CCCeEEEE
Q 001310 642 NENRIKIL 649 (1103)
Q Consensus 642 ~dg~i~iw 649 (1103)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 55555444
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.6e-24 Score=204.38 Aligned_cols=330 Identities=11% Similarity=0.149 Sum_probs=238.8
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1103)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1103)
.++.+.+| ...|+.++.......+.+++.|.+-+||.++++.++....+|.+.|+++.|+
T Consensus 140 lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh------------------ 199 (481)
T KOG0300|consen 140 LVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH------------------ 199 (481)
T ss_pred ehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec------------------
Confidence 33444444 4568888888777789999999999999999999999999988888888887
Q ss_pred CCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccc
Q 001310 692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771 (1103)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 771 (1103)
+.+.++++++.|++..+|..... ...|.......+ |.... + -. .|...+- .+
T Consensus 200 ----~s~~L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE-~-e~-sDe~~~d---------~d 251 (481)
T KOG0300|consen 200 ----NSGLLLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE-E-EH-SDEHNRD---------TD 251 (481)
T ss_pred ----cccceEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh-h-hc-ccccccc---------cc
Confidence 45667778888888888875421 111110000000 00000 0 00 0000000 00
Q ss_pred cccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEE
Q 001310 772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA 850 (1103)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 850 (1103)
+.. ...|..+...-....+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++
T Consensus 252 ~~~----------~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 252 SSE----------KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred ccc----------ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence 000 0111111111112235999999999999999999999 89999999999999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC
Q 001310 851 FNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 929 (1103)
Q Consensus 851 ~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 929 (1103)
-+| ..+++++.+.|.+.++||+... ..+..|.||.+.|+++.|.-| ..+++|+.|.+|++||+.+-. ..+.+.
T Consensus 322 tHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATI 395 (481)
T KOG0300|consen 322 THP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATI 395 (481)
T ss_pred cCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----Ccceee
Confidence 999 8999999999999999999853 457889999999999999876 578899999999999998732 122222
Q ss_pred CCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEE---EeeCCCCcCeEEEEEccCC--CEEEEEecCCcEE
Q 001310 930 DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLS 1003 (1103)
Q Consensus 930 ~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~dg~v~ 1003 (1103)
.-. .++..++.+..+..||+- .+..|++||+......+ +-..+|..-|.+++|+.+- .-|++++-|..+.
T Consensus 396 Rtd----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 396 RTD----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred ecC----CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 221 368899999999999996 55689999998443322 1245789999999998765 3488999999999
Q ss_pred EEeCCC
Q 001310 1004 IHEASN 1009 (1103)
Q Consensus 1004 vWd~~~ 1009 (1103)
-|++..
T Consensus 472 gW~in~ 477 (481)
T KOG0300|consen 472 GWKINT 477 (481)
T ss_pred eeEecc
Confidence 999864
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-24 Score=201.80 Aligned_cols=252 Identities=20% Similarity=0.340 Sum_probs=208.6
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec--CCCceEEEEEcCCCceE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 468 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~ 468 (1103)
+...|+..|..+...--|++||+|+.|++|+|+.+..+.......+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3567999999999888999999999999999999998877677789999999999999977 677 899999999999
Q ss_pred EEeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC---eeEEecCCCccEEEEEEccC---
Q 001310 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN--- 540 (1103)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d--- 540 (1103)
||.-.+|+ ..+....|...|++++|.|..-|..|++++.||.|.+.+++... .......|.-.+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977774 34566789999999999999999999999999999999988762 23355677788999999986
Q ss_pred C-----------CEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 001310 541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 603 (1103)
Q Consensus 541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~ 603 (1103)
| +.|++++. |..|.||+...++ ..+.+.+|. +.|+.++|.|.- .++++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 5 56888876 6679999988763 334577777 999999999974 5789999999999
Q ss_pred EEECCCC-e-eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 604 IWDMNKV-Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 604 iwd~~~~-~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
||..... + -..++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9977632 1 11111 11223458899999999999999999999999754
No 120
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.1e-22 Score=229.22 Aligned_cols=251 Identities=12% Similarity=0.171 Sum_probs=189.2
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCc--------eeEEeecC
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~ 484 (1103)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 33478899999999999997 56 89999999999999997642 34567899
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1103)
...|.+++|+|.. ..++++++.|++|++||+.++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998753 2356899999999999999888766665 4568999999999999998865 56799999999
Q ss_pred CeeEEEEecccccC--CceEEEEEcCCCCEEEEEeCCC----cEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310 565 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1103)
Q Consensus 565 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l 637 (1103)
++.+..+.+|.... ..+....|++++.++++++.|+ .|++||++. ++++.....+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999998887211 1122334568999999988664 799999995 5666666555443323333334568899
Q ss_pred EEEECCCeEEEEEcCCCCeeEecc-ccccceeeeEEecC
Q 001310 638 AVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 675 (1103)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~ 675 (1103)
++|..|+.|++|++..+.....-. .+..+..+++|.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 999999999999998763222111 13445566666653
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.6e-23 Score=198.10 Aligned_cols=319 Identities=15% Similarity=0.171 Sum_probs=225.2
Q ss_pred eEEEeCCCCcee-----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE----EecCCCccEEEEEE
Q 001310 467 IKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAY 537 (1103)
Q Consensus 467 i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~ 537 (1103)
++-|+....+.. ..+++|.+.|++++| +.||.+|++++.|++|++|+++...... .....-...+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE
Confidence 445555444432 456899999999999 5688999999999999999998643321 12222335678999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCC---eeE------EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 538 SANGRRLFSCGTSKEGESFLVEWNESEG---AIK------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~---~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
+||.+-++....++ ..+++|.+... ... ..+.-+..|.-.+..+-...++.+|++++.|..|.+|++.
T Consensus 141 apDc~s~vv~~~~g---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 141 APDCKSVVVSVKRG---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred CCCcceEEEEEccC---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence 99999887766533 35888865422 111 1111222233456667777788999999999999999998
Q ss_pred CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1103)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 688 (1103)
|+.+..+... ...-...+.||+|+++++++-.-.+++|..--+
T Consensus 218 -Gq~L~~idtn--q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~---------------------------------- 260 (420)
T KOG2096|consen 218 -GQLLQSIDTN--QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT---------------------------------- 260 (420)
T ss_pred -Cceeeeeccc--cccccceeeCCCCcEEEEecCCCCceEEEEEec----------------------------------
Confidence 8888888654 234577899999999999999888999974311
Q ss_pred EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc
Q 001310 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1103)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 768 (1103)
.||..- ...|++. ..+|...|..++|+++..++++.+.||.+++||.+..-.
T Consensus 261 -------kdG~fq------ev~rvf~---------------LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 261 -------KDGTFQ------EVKRVFS---------------LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred -------cCcchh------hhhhhhe---------------eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 111110 1112222 246999999999999999999999999999999765321
Q ss_pred ccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEec-CCCCCee
Q 001310 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTAT 847 (1103)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~ 847 (1103)
.. ..+++ +.....+..........++++|+|+.||.+....++++..++++...++. .|...|.
T Consensus 313 ~~-------qDpk~--------Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 313 AG-------QDPKI--------LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred cC-------CCchH--------hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCcee
Confidence 00 00111 11111111123334458999999999999999999999999998877775 4889999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310 848 SLAFNPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg~v~iwd 872 (1103)
+++|++ +|+++++++ |..+++..
T Consensus 378 ~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEecC-CCcEEeeec-ceeeeeec
Confidence 999999 999999887 67788775
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3e-23 Score=221.30 Aligned_cols=275 Identities=15% Similarity=0.214 Sum_probs=220.3
Q ss_pred ccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE-EE
Q 001310 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA 809 (1103)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~ 809 (1103)
.+|...|..+++.+.. .+++++.||++++|+-..... +... ...++.+-|.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~--~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETH--AFEGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccce--ecccCcceeeccce
Confidence 4588888888876554 689999999999997322111 1101 11135666665 77
Q ss_pred Eec-CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC
Q 001310 810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1103)
Q Consensus 810 ~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1103)
+.+ ++-.+++|+ |.+|.+|.......+.++.+|...|.++.... ++. +++|+.|.++++|-. +++...+.+|+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 764 444466666 89999999999999999999999999999887 665 999999999999965 466677999999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001310 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1103)
Q Consensus 888 ~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~ 967 (1103)
.|+++++-|++ .++|||.|++|++|.-.+ .++++.||.. -|+.+++-+++.+|-++.||.|++|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999987 889999999999998755 7788999887 899999999999999999999999999 68
Q ss_pred eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEE
Q 001310 968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAI 1047 (1103)
Q Consensus 968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1047 (1103)
+++.+ ..+|..-|.++....++..++++++|+++++|+.. ++.+.+. +| +-.|++..+
T Consensus 210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lP---------------ttsiWsa~~ 267 (745)
T KOG0301|consen 210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LP---------------TTSIWSAKV 267 (745)
T ss_pred ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cC---------------ccceEEEEE
Confidence 88887 66899999999999999999999999999999988 5555555 11 112554333
Q ss_pred EECCCCCcEEEEEecCCcEEEEccC
Q 001310 1048 AAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1048 ~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
-.+ ..+++|+.||.|+||...
T Consensus 268 L~N----gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLN----GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeC----CCEEEeccCceEEEEEec
Confidence 333 348999999999999874
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.7e-21 Score=211.47 Aligned_cols=514 Identities=16% Similarity=0.182 Sum_probs=322.7
Q ss_pred cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcC
Q 001310 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 517 (1103)
Q Consensus 439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 517 (1103)
|-...-....||+|++. ++.+. +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333445579999994 44333 558999999999999999999999999999877654 678899999999999999
Q ss_pred CCCeeEEecCCCccEEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeeE-----EEEecccc----cCCceEEEE
Q 001310 518 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQL----QHNSVSVVH 585 (1103)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~~----~~~~v~~~~ 585 (1103)
.+....++..... +..+.+.| +....+..+. +....+........... .++..+.. ....-..+.
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 9888777665433 32333322 1111221111 00000111111111111 11111110 001135677
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEE--cCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccc
Q 001310 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1103)
Q Consensus 586 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1103)
+++.+.+....- +..+.+|...++...... ....+...++++++||+++++|++..||.|.+|.--.. ...
T Consensus 168 ~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~~ 240 (792)
T KOG1963|consen 168 DNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SDD 240 (792)
T ss_pred EcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------ccc
Confidence 777776655544 566888988875511111 01122334789999999999999999999999974421 000
Q ss_pred ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe
Q 001310 664 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 743 (1103)
Q Consensus 664 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 743 (1103)
... .++.=| |...|.+++|+
T Consensus 241 ~~t-----------------------------------------~t~lHW-------------------H~~~V~~L~fS 260 (792)
T KOG1963|consen 241 SET-----------------------------------------CTLLHW-------------------HHDEVNSLSFS 260 (792)
T ss_pred ccc-----------------------------------------ceEEEe-------------------cccccceeEEe
Confidence 000 011112 66789999999
Q ss_pred cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C
Q 001310 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G 822 (1103)
Q Consensus 744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d 822 (1103)
++|.+|++|+..|.+.+|.+.+++. .. ++ .-.++|..+.+|||+.+.+... |
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEecC
Confidence 9999999999999999998765432 11 11 1578999999999998887775 8
Q ss_pred CeEEEEEcCCceeeEEecC---C--------CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec--------
Q 001310 823 GVISLYIVMTFKTILTIMP---P--------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------- 883 (1103)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~---~--------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-------- 883 (1103)
+.|.+....+.....++.+ . .+-.+.++++| .-+.++..+..|.|.+||+.+.+.+..+.
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 9999888766555444433 2 23457789999 67788889999999999999877665543
Q ss_pred ---cCCCCEEEEEEccCCCEEEEEeC--------CC--eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEE-cCCCC
Q 001310 884 ---GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF-HKDQT 949 (1103)
Q Consensus 884 ---~h~~~V~~l~~s~dg~~l~s~s~--------dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f-s~dg~ 949 (1103)
.+.-.+++++.+-.|.+++|.-. || .+++|-.................|.. .+...+| ++...
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~---~~vat~~~~~~rs 469 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN---AFVATIFLNPTRS 469 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc---eeEEEEEecCccc
Confidence 12335788888989999998742 33 47889776644322211122222221 3333333 33333
Q ss_pred -EEEE-EeCCeEEEEECCCc----------eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC-ceeEEee
Q 001310 950 -RFLL-VHETHLAIYEAEEL----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1103)
Q Consensus 950 -~l~~-~~d~~v~iwd~~~~----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~-~~~~~~~ 1016 (1103)
..++ +.||.+++|-..+. .|... -..|..++++++||.||..|++ +.|++|.+||..+ .++.+..
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred ceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhhccc
Confidence 4555 59999999998332 22221 2247899999999999977665 5788999999999 6666555
Q ss_pred ccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCCCC
Q 001310 1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1078 (1103)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~w 1078 (1103)
....+-- +.+| + .+-.+. .........+.+.+|++....-.|
T Consensus 548 ~~~~~~~------~~~~---------~---~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 548 GSRNWPI------AELL---------F---TAQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cccccch------HhHh---------h---hccccc--ccceeeccCceEehHhhhhhheec
Confidence 5222111 0011 0 011111 122233456789999998777777
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.4e-23 Score=214.09 Aligned_cols=265 Identities=16% Similarity=0.246 Sum_probs=211.9
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-CC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS 409 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~ 409 (1103)
-.|.++|..+.+-|....++|+++..+.|.|||..+-.-.... .+.| .....+.||+..=..++|++. .-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------~~~~---~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------SGEC---RPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------cccC---CCceEEEeecccccccccccccce
Confidence 4688999999999999889999999999999998764322210 0001 122348899988888999994 55
Q ss_pred EEEEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC--CCceeEEeec
Q 001310 410 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 483 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~ 483 (1103)
+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.....+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 789999999999999976543 5566678999999999999998776 79999999999999999 5666778899
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
|.+.|.+++|+|. ++..||+||.|++|.+||+++... ...+..|...|..+.|||....+++.+. .++.+.+||+
T Consensus 271 h~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDl 346 (422)
T KOG0264|consen 271 HSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDL 346 (422)
T ss_pred cCCceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEec
Confidence 9999999999987 468999999999999999998664 5588999999999999997665554432 2778999998
Q ss_pred CCCeeE-----------EEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001310 563 SEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1103)
Q Consensus 563 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 609 (1103)
..-... ..+-.|.+|...|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 743222 123334445599999999999887655 88999999999863
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.3e-20 Score=203.23 Aligned_cols=278 Identities=13% Similarity=0.178 Sum_probs=233.4
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC-CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
.|...-+.++|.|+|.+|.+++.||.|++|+.... +... .+.-+...|.+++... . .|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEeeC
Confidence 58899999999999999999999999999998776 2222 3333777888887643 4 6999999999999999
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
..++.-..+....-+++.+++ +.+|.+++.||.|-.|++-+..+......+.+|..+|.++.|+|++++||+.+.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--- 158 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--- 158 (933)
T ss_pred CCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence 988876666667788999998 457789999999999999999999999999999999999999999999999876
Q ss_pred CceeEEEEeCCCCeeEEEEeccccc-----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 553 GESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
+|.|++||+.++.+...+.+-... ...+..++|+|++..++..+.|+.|++|+..+.+....+........+..
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 677999999999887776654321 23467789999999999999999999999999999988877655555889
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 688 (1103)
+.|+|+|+|||+++.+|.|.|||.++.. .......|.+++|.|....+..-...+..
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeecccc
Confidence 9999999999999999999999999722 14456778999999988777655444433
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.1e-23 Score=211.04 Aligned_cols=282 Identities=12% Similarity=0.173 Sum_probs=225.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
|..-|.++++|...+.+.+++. |.|+|||+..... . .+ ... +.-....+.|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-----k---~P-----------vsq--Ldcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-----K---SP-----------VSQ--LDCLNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-----C---Cc-----------ccc--ccccCcccceeeeEecC
Confidence 7888899999999998887765 5899999875421 0 00 111 11112567889999999
Q ss_pred CCCEEEEEcC-CeEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE
Q 001310 813 NDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 889 (1103)
Q Consensus 813 d~~~l~~~~d-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 889 (1103)
||+.|++|+. .++.|||+...... .++........+++.+| |.++.+++..||.|.|||+.+...++.|.||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 9999999985 78999999865443 33444445678899999 89999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCce
Q 001310 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 968 (1103)
Q Consensus 890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~ 968 (1103)
.||.+++||..|-||+-|.+|+.||+..+.... ... +...|.++..+|.+.+|++| .++.+.|..+...+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 999999999999999999999999999866322 111 11368999999999999998 67788888877554
Q ss_pred EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEE
Q 001310 969 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIA 1048 (1103)
Q Consensus 969 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1048 (1103)
.-. +..|...|.++.|++.|+++++.+.|.-+-.|.+.-|..+.... -.+.|.+.+++
T Consensus 626 kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------------------E~SsVlsCDIS 683 (705)
T KOG0639|consen 626 KYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------------------ESSSVLSCDIS 683 (705)
T ss_pred cee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------------------ccCcceeeeec
Confidence 433 45689999999999999999999999999999999887765544 12336667777
Q ss_pred ECCCCCcEEEEEecCCcEEEEcc
Q 001310 1049 AHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1049 ~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
++ ..++|||+.|..-.||++
T Consensus 684 ~d---dkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FD---DKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cC---ceEEEecCCCcceEEEEE
Confidence 76 789999999988888876
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=204.43 Aligned_cols=289 Identities=15% Similarity=0.225 Sum_probs=222.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001310 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1103)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~ 654 (1103)
.+.|+++.|+|....+++++.||+++||.+... ..++.+... ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 368999999999999999999999999988643 344555443 45789999999999 8888888889999998765
Q ss_pred CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccc
Q 001310 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1103)
Q Consensus 655 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1103)
+....-. +
T Consensus 291 k~~k~~~----------------------------------~-------------------------------------- 298 (514)
T KOG2055|consen 291 KVTKLKP----------------------------------P-------------------------------------- 298 (514)
T ss_pred ccccccC----------------------------------C--------------------------------------
Confidence 3221100 0
Q ss_pred ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
. |. ....+..+.+||++
T Consensus 299 ----------~------------------------------------------g~-----------e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 299 ----------Y------------------------------------------GV-----------EEKSMERFEVSHDS 315 (514)
T ss_pred ----------C------------------------------------------Cc-----------ccchhheeEecCCC
Confidence 0 00 12234456677777
Q ss_pred CEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC-CEEEE
Q 001310 815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL 892 (1103)
Q Consensus 815 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l 892 (1103)
++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|.+.+.+|.|++||+....++.++....+ .-+++
T Consensus 316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~ 393 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL 393 (514)
T ss_pred CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence 7887776 5788888888888888776 567899999998 888888899999999999999999888874221 23568
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCce-eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE---eCCeEEEEECCCce
Q 001310 893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT 968 (1103)
Q Consensus 893 ~~s~dg~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~v~iwd~~~~~ 968 (1103)
+.|++|.+||+|+..|.|.|||.++.-. ...+++....... ..|++++|++|+++||++ ....+++..+.+..
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 8889999999999999999999776221 1122333333333 379999999999999984 56789999999887
Q ss_pred EEEEeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
....|.... -+.|++++|||.|.+||+|..+|.|.+|.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 776654432 4678999999999999999999999999874
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.1e-23 Score=211.08 Aligned_cols=287 Identities=14% Similarity=0.179 Sum_probs=228.1
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.|..-|.++++|...+ .+.+|+. |-|+|||+....... +....-......-|+++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence 5777889999999988 5888877 889999996542110 11110012245789999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
++|+.-.++.|||+..... +....+..-.-...+++.+||.+ +.+++..||.|.|||+.....++.|+||.+.+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223333334567889999999 89999999999999999999999999999999999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
.+ +++|..|.+|+-|++||.||++.+....... ....|.++.++|.+.+|++|-. ++.+.+..... .....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~sk-p~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSK-PEKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecCC-ccceee
Confidence 88 5688999999999999999999876655433 2347889999999999999976 44466665433 333444
Q ss_pred ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
..|. ..|.++.|.+.|+++++.+.|+.+..|...-|..+..... ...|.++.+|.|.+++++|+.|..-.+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4455 8999999999999999999999999999998887766643 356899999999999999999988888764
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=9.9e-21 Score=207.74 Aligned_cols=279 Identities=17% Similarity=0.231 Sum_probs=201.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEeccccccceee
Q 001310 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1103)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~ 669 (1103)
..+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS------- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------
Confidence 467889999999999999999888887543 35789999999876 5566788999998776532211100
Q ss_pred eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1103)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1103)
T Consensus 72 -------------------------------------------------------------------------------- 71 (300)
T TIGR03866 72 -------------------------------------------------------------------------------- 71 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEE
Q 001310 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 827 (1103)
Q Consensus 750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~i 827 (1103)
+ ..+..++++|+++.+++++ ++.+++
T Consensus 72 ---------------------------------------------------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 72 ---------------------------------------------------G-PDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------C-CCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 0 0122455667776555442 577888
Q ss_pred EEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEE-e
Q 001310 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 905 (1103)
Q Consensus 828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-s 905 (1103)
||+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 88887777666652 33467899999 888999888775 567889998877665442 2346789999999988644 4
Q ss_pred CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE--EeCCeEEEEECCCceEEEEeeCCCCcCeEE
Q 001310 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 983 (1103)
Q Consensus 906 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~ 983 (1103)
.++.|++||+.+++............+. .......++|+|||+++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 6999999999987654322221111010 0113457899999998665 356789999999988876543 3457899
Q ss_pred EEEccCCCEEEEE-ecCCcEEEEeCCCceeEEeec
Q 001310 984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 984 l~fs~dg~~l~t~-~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
++|+|||++|+++ +.++.|++||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999988887
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.4e-23 Score=192.22 Aligned_cols=255 Identities=16% Similarity=0.213 Sum_probs=204.4
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 406 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-- 406 (1103)
+-.+|.+-|..+...--|++ ||+++.|++|+|+.+++.....- ...|.||+++|..++|..
T Consensus 6 idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeecccc
Confidence 44689999999999888984 89999999999999987654211 112889999999999987
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC---ceeEEeec
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG 483 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 483 (1103)
-|.+||+++.||.|.||.-++| ...+......|...|++++|.|.+-.+.|++++.||.|.|.+.+.. ........
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 8999999999999999999988 4445556778999999999999988889999999999999987654 22344578
Q ss_pred CCCceEEEEeeecCC-c-----------cEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccCC----CEEE
Q 001310 484 HGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLF 545 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg----~~l~ 545 (1103)
|.-.|+++++.|..- | ..|++|+.|+.|+||+.++..- ...+..|...|+.++|.|.- .+++
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 999999999977521 1 5699999999999999988642 23578889999999999964 4688
Q ss_pred EEecCCCCceeEEEEeCCCC--ee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 546 SCGTSKEGESFLVEWNESEG--AI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~--~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
+++. ++.+.||-.... .. ...+... ...+..+.|+..|+.|+.++.|+.|.+|.-.
T Consensus 228 S~Sq----Dg~viIwt~~~e~e~wk~tll~~f---~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 228 SCSQ----DGTVIIWTKDEEYEPWKKTLLEEF---PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecC----CCcEEEEEecCccCcccccccccC---CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 8875 667999976522 11 1122222 2679999999999999999999999999754
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.7e-21 Score=210.34 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=212.0
Q ss_pred EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE-EEEeCCCeEEEEEecC
Q 001310 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1103)
Q Consensus 349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~iwd~~~ 427 (1103)
++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999999887654 3333 346789999999987 5667889999999998
Q ss_pred CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC
Q 001310 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1103)
Q Consensus 428 ~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1103)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 86544 3333333 567899999984 345556789999999999888877753 3345677775 47778888887
Q ss_pred CC-eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc----cCCceE
Q 001310 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1103)
Q Consensus 508 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1103)
++ .+.+||..+......... ......++|+|+|+++++++. .++.|++||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877665443332 234567899999999876542 256799999999988776653210 011235
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEec
Q 001310 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 660 (1103)
Q Consensus 583 ~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~ 660 (1103)
.++|+|+++++++ .+.++.+.+||..+++.+..+... ..+.+++|+|+|++|+++ ..++.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 455678999999998877665432 247899999999999886 45899999999999888877
Q ss_pred cccccceeeeEEe
Q 001310 661 GVLSDNLRKLSVN 673 (1103)
Q Consensus 661 ~~~~~~i~~~~~~ 673 (1103)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 653 333555544
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.3e-22 Score=189.24 Aligned_cols=320 Identities=13% Similarity=0.192 Sum_probs=234.7
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~ 409 (1103)
..|.+.|..+.+.+...+++++|+.||.|.+||+++...-...-+ +-+ ..|. .....-.+|.-.|..+.|-| |.-
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 468899999999987666899999999999999986542111000 000 0111 12222568999999999999 778
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCC-ceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
.+.+++.|.+++|||.++-+... .+ .-.+.|.+-++||-.. ..++++|..|-.|++-|+.+|.+-+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 89999999999999999865433 22 2456788888888543 3367888888899999999999999999999999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
.++.|+|..+ -.|++|+.||.|++||++.. .+.+++.|...++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCccC
Confidence 9999998744 68899999999999998742 112444454444333
Q ss_pred EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC---C-CCCCCceEEEecCCCEEEEEECCC
Q 001310 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG---G-GLPENPRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~-~~~~v~~v~~s~~g~~l~~~~~dg 644 (1103)
..++....|.+.|+.++|+.++.++++.+.|..+++|+..+|+....-.++ . ....-..+. +.+...++.--.++
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 333333344589999999999999999999999999999988654322111 0 000001122 33445566666678
Q ss_pred eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
.+.++++-++..++.+..|-..+.|.++. |+-+...+++.|+.+..|-..
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 99999999999999999998888877776 566777888899998888753
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5e-22 Score=191.85 Aligned_cols=300 Identities=15% Similarity=0.194 Sum_probs=223.8
Q ss_pred CCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1103)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1103)
..|.++-.+|.... -.|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 45666767776443 78999999998 799999999999999998764433 889999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
+++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-.++..+++-- +..-.+-++..++....
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVL 144 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeec
Confidence 9999999999999999999999999999876643 256789999999987764454443 44455555544322111
Q ss_pred eecCCCceEEE--EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-ccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 481 ~~~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
-....+..... +-..+..|+++++|...|.+.++|..+.++...++... ..|..+.++..|+.++..+. +..|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 11111111111 11235677899999999999999999998888777665 68999999999999999876 7779
Q ss_pred EEEeCCCC-------ee--EEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
+.|+++.- +. .++++.-- .+..-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99987621 11 12222111 123456788999999998876 456799999999999999987654 35678
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
+.|+|-...+++. ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988777777 6789999987643
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.9e-22 Score=203.55 Aligned_cols=293 Identities=15% Similarity=0.219 Sum_probs=230.3
Q ss_pred EEEEEcCCC-cEEEEECCCCCeeeeeeeeEeeccccccceeee-eccCCCccEEEEEECCCCCEEEEEeC-CCeEEEEEe
Q 001310 349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA-LVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY 425 (1103)
Q Consensus 349 llasgs~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~spdg~~las~~~-d~~i~iwd~ 425 (1103)
++.+++.|. ++.+||+.+|....++. .. .+.+|.- -+. .+.|++++.. ...|.+|.+
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~yk--------------g~~~a~~~sl----~~l--~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYK--------------GSYLAQAASL----TAL--NNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEec--------------Ccccccchhh----hhh--chhheeeecccCcccccccc
Confidence 344444454 59999999998765411 00 0111111 011 2467777754 457999999
Q ss_pred cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE
Q 001310 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1103)
Q Consensus 426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1103)
.......+.. --.++|.+++-+|+|. +|+.|+..|.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++|
T Consensus 69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg 141 (476)
T KOG0646|consen 69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG 141 (476)
T ss_pred Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence 8765444222 2456799999999998 7888879999999999999999999999999999999 5688999999
Q ss_pred ECCCeEEEEEcC---------CCCeeEEecCCCccEEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc
Q 001310 506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1103)
Q Consensus 506 ~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1103)
+.||.|++|++. +......+..|.-+|+.+...+. ..++++++. |.++++||+..|..+..+...
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence 999999999763 23455677888889999888765 457888765 778999999999999888764
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------eeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
. .+.+++.+|.+..+++|+.+|.|.+.++..- ..+..+.+|.+...|+|++++-||.+|+
T Consensus 218 ~----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 S----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred C----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 4 8999999999999999999999998876532 2344555565555899999999999999
Q ss_pred EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 676 (1103)
+|+.||.+.|||..+.++++++....++|+.+.+.|..
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999998888999999887653
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.6e-22 Score=201.15 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=232.8
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC-EEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 412 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~la 412 (1103)
.++|++|.|+|.-. +|.+++.|++++||.+.......... +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 35999999999997 89999999999999987543222111 112357899999999999 888
Q ss_pred EEeCCCeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
+++....++.||+.+.+..+ ...+.++. ..+.....|++++ +|+..|..|.|.+.-..+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999976433 22444554 3577888999999 89999999999999999999999887 56788999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc-cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 564 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------ 564 (1103)
+|+ .++..|++.+.+|.|.+||++...+...+...+. .-+++|.+++|.+||+|+. .|.|.|||.++
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 985 5778999999999999999999988887766554 4578899999999999975 67799999653
Q ss_pred CeeEEEEecccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEE
Q 001310 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
.+++..+.... ..|+++.|+++.+.|+.+| .+..+++-.+.+......++.. .....++|++|||.|.++|+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 34555555544 7899999999999888876 5678999998887666555433 2345689999999999999999
Q ss_pred CCCeEEEEEcC
Q 001310 642 NENRIKILETP 652 (1103)
Q Consensus 642 ~dg~i~iw~~~ 652 (1103)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999864
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2e-21 Score=188.21 Aligned_cols=271 Identities=14% Similarity=0.104 Sum_probs=211.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1103)
.....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 357899999999999999999999999999999874332 235899999999998765 9999999999999999
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
++.... +..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++.
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS---- 153 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----
Confidence 888654 45699999999987543 479999999999999998744444444333 6666554 5677777765
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCC-------C
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------L 622 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~ 622 (1103)
+..+.+||+++......... ..-+..++++++-|++.-+++++-||.|.+=.++.. +....+..|.. .
T Consensus 154 ~r~v~iyDLRn~~~~~q~re-S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRE-SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred CceEEEEEcccccchhhhcc-ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 55699999987654332111 112367899999999888999999999988666554 23334443321 2
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeee
Q 001310 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1103)
Q Consensus 623 ~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 682 (1103)
.+|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 368999999999999999999999999999999999888888889999998665555444
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=1e-20 Score=199.93 Aligned_cols=456 Identities=13% Similarity=0.132 Sum_probs=290.9
Q ss_pred cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee
Q 001310 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1103)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1103)
.|..++|.|||.+++++.+ ..+.+||...|..++++++|.+.|+++++ +.||..+++|+.|..|.+|+-......
T Consensus 14 ci~d~afkPDGsqL~lAAg---~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---SRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecC---CEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 7999999999997444433 36999999999999999999999999999 568899999999999999975433322
Q ss_pred EEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001310 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1103)
Q Consensus 523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 602 (1103)
. -.|+..|.|+.|+|-...|++|+-+. .-+|........ ..+. ...+.+++|..||.+++.|-.+|+|
T Consensus 89 k--YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~-K~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 K--YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVS-KHKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred e--eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHH-hhhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 2 34777899999999999999998643 667876544322 2221 2568999999999999999999999
Q ss_pred EEEECCCCeeEEEEcCCCCCCCCceEEEecCC-----CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCc
Q 001310 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1103)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 677 (1103)
.+-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99875443333333333445689999999963 46777777788888776643 22222221222223333
Q ss_pred eeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCce
Q 001310 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1103)
Q Consensus 678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 757 (1103)
-++|.+++.|+.|+.+.++..+....+. . ......|..++..|+++.++.|+.||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLGT-----v--g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLGT-----V--GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeEEee-----c--cccceeEEEEEEccCCceEEEEEccCe
Confidence 3788899999999988888654211110 0 114567999999999999999999999
Q ss_pred EEEeecCCCcccc---------------------ccc---------------------cccccCCeeecCCCCCce-eec
Q 001310 758 HLMWRWPRNDLTL---------------------STE---------------------ATTKVPPRLYQPRHGPQF-MVN 794 (1103)
Q Consensus 758 i~vw~~~~~~~~~---------------------~~~---------------------~~~~~~~~~~~~~~~~~~-~~~ 794 (1103)
+..|++-...... .+. +.-...+.+|...++... +..
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY 366 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHY 366 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchh
Confidence 9999886654300 000 000111223332222200 000
Q ss_pred cCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEE--EcCCCCCEEEEEeCCCeEEEEE
Q 001310 795 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 795 ~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~--~s~~d~~~lasg~~dg~v~iwd 872 (1103)
.+.. .......+--+--.+..++.+.+..+..+|...-+. +... -.+-|+-+. =.|.+..-|+.|..||.|.-.=
T Consensus 367 ~v~e-kI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 367 RVKE-KIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred HHHH-HHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 0000 000011111111134455556666677777642111 1100 000011111 1122556788898888765444
Q ss_pred cCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE
Q 001310 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1103)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 952 (1103)
+++.-++-.. .....|.|+..+...+.||+..+.++..++|+.+++.. ++.+ .+.+++|.....-++
T Consensus 444 ~dN~~PiLl~-~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL----~QEp--------g~nSV~wNT~~E~Ml 510 (1081)
T KOG1538|consen 444 VDNLFPILLL-KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL----FQEP--------GANSVAWNTQCEDML 510 (1081)
T ss_pred ecCCchhhee-cccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE----eecC--------CCceEEeeccccceE
Confidence 4443333222 24567999999999999999999999999999997732 2222 477899988765544
Q ss_pred E-EeCCeEEE
Q 001310 953 L-VHETHLAI 961 (1103)
Q Consensus 953 ~-~~d~~v~i 961 (1103)
+ +..|.+.|
T Consensus 511 cfT~~g~L~V 520 (1081)
T KOG1538|consen 511 CFTGGGYLNV 520 (1081)
T ss_pred EEecCCceEE
Confidence 4 55565544
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=200.50 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=205.0
Q ss_pred ceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEec
Q 001310 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1103)
Q Consensus 347 ~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~ 426 (1103)
.+++++-.....+.+|.+....... +..+ -.++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~----------------q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV----------------QYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhh----------------hhcc---cccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 3444443445567777776544332 1112 34689999999999999999999999999999
Q ss_pred CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---------CCceeEEeecCCCceEEEEeeecC
Q 001310 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKE 497 (1103)
Q Consensus 427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1103)
+|..+. .+.+|=..|+|+.|+.||. +++|||.||.|.+|++. +-++++.|..|.-+|+++...+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 998776 5689999999999999999 89999999999999863 346788999999999999987766
Q ss_pred CccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-------------
Q 001310 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------------- 564 (1103)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------------- 564 (1103)
-..+++++|.|.++++||+..+.....+.. ...+.+++.+|.++.+++|+. +|.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 667999999999999999999877766654 457899999999999999976 55677665532
Q ss_pred ---CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310 565 ---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1103)
Q Consensus 565 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1103)
+..+..+.||. ....|+|++.+-||..|++|+.||.|+|||+.+.++++++... ..+|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred ccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 23455667776 1138999999999999999999999999999999999888732 346888888664
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.5e-22 Score=189.96 Aligned_cols=266 Identities=15% Similarity=0.235 Sum_probs=204.9
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7799999999999999999999999999975433 6789999999999999999 8999999999999999999999
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc----cEEEEEEccCCCEEEEEecCCCCc
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
+.+. ...+|+.+.|+|......+++--... -.+-++.............+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 77899999999987765555544333 44445554322221111111 1233468999999999975 7
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------eeE--EEEcCCCCCCCC
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 625 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 625 (1103)
|.+.++|..+-+++..++-.. ...|..+.++..|+.++.-+.|..||.|++..- +.. +.+..--+...-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 779999999999988887644 467899999999999999999999999997631 111 111110111234
Q ss_pred ceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeEeccccc-cceeeeEEecCCc
Q 001310 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPIST 677 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~ 677 (1103)
.+++|+.+|.+++.++. ...++||....|..++.+.+.. .....+.+.|...
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence 68999999999988775 4679999999999999998877 5566677775443
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=4.5e-22 Score=203.07 Aligned_cols=259 Identities=13% Similarity=0.173 Sum_probs=204.4
Q ss_pred CCCCeeEEEEecCCCEEEEE-c-CCeEEEEEcCCcee----------eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeE
Q 001310 801 SQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKT----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~-~-dg~i~iwd~~~~~~----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1103)
|.+.|..+.+-|....|+++ + .+.|.|||..+..- -.++.+|...-.+|+|++...-.|++|+.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 88999999999987666654 3 58899999874321 226778888888899999777899999999999
Q ss_pred EEEEcCCce-------eEEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCce
Q 001310 869 LIYNARSSE-------VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1103)
Q Consensus 869 ~iwd~~~~~-------~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1103)
++||+.... ....+.+|.+.|..++|++- ..++++++.|+.+.|||+.+++ ..+.....+|.. .+.
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---~~~~~~~~ah~~---~vn 276 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---SKPSHSVKAHSA---EVN 276 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---CCCcccccccCC---cee
Confidence 999998532 35678899999999999985 4788999999999999999742 223344444443 899
Q ss_pred EEEEcCCCCEEEE-E-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 941 HIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 941 ~l~fs~dg~~l~~-~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+++|+|-+.+|++ + .|++|.+||+++.......+.+|...|..|.|||+. ..||+++.|+.+.|||+..-.......
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999997766554 4 799999999998776655588999999999999966 578999999999999997543322211
Q ss_pred cccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1018 STAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
. ...+....+-...||...|. .++|+|.++-.|+++++|+.++||+..
T Consensus 357 ---d--a~dgppEllF~HgGH~~kV~--DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 ---D--AEDGPPELLFIHGGHTAKVS--DFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ---h--hccCCcceeEEecCcccccc--cccCCCCCCeEEEEecCCceEEEeecc
Confidence 1 11123345556678999885 889999999999999999999999984
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.6e-21 Score=196.78 Aligned_cols=306 Identities=17% Similarity=0.197 Sum_probs=229.9
Q ss_pred ceeEecccCCcCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
......+-|.++|++++|+|... .++|+|+..|+|-+||+.+.+...... .++..|+++|.++.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK 241 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence 34455667888999999999876 789999999999999996444333211 23778999999999
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce-eEEe
Q 001310 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF 481 (1103)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~ 481 (1103)
|+| +-..+++.+.||+|+.-|++++. ......+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence 999 56788899999999999999864 222223333455678888988887 677787778999999998765 5667
Q ss_pred ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee----EEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
.-|...|.+++++|... .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|
T Consensus 319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I 393 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI 393 (498)
T ss_pred hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence 78999999999998744 79999999999999999865433 345567889999999998888887765 6679
Q ss_pred EEEeCC----CCeeEEEEecccccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
+|||.. .-.....+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..+....-..-..|+
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999983 2333333332221112 2345679999999999999999999999999988876554332222345799
Q ss_pred cCCC-EEEEEECCCeEEEEEcCC
Q 001310 632 KNGT-LLAVIANENRIKILETPE 653 (1103)
Q Consensus 632 ~~g~-~l~~~~~dg~i~iw~~~~ 653 (1103)
|-+. +++-++..|.|+||..+.
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccccceeccCCccceEEEEecCC
Confidence 9877 445555678888886543
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.7e-21 Score=203.97 Aligned_cols=322 Identities=12% Similarity=0.169 Sum_probs=245.8
Q ss_pred cccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
....||..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+ .+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------DS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------cc
Confidence 445677889999999999999999999998 799999999999999999999987443 35
Q ss_pred cEEEEEECCCCC--EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE----cCCCceEEEe
Q 001310 398 SVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIKVWD 471 (1103)
Q Consensus 398 ~V~~~~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~----~~d~~i~iwd 471 (1103)
.|.|++|+|.+. .||++-... +.|-+..-|..+.. +.+ .. .|+++ ..|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceeec
Confidence 899999999765 455554444 66666655532221 000 00 12222 2355778887
Q ss_pred CCCCc----eeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310 472 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 472 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1103)
-.... -++..-.|...|..+.||. .|.+|++...+ ..|.|.++.....+..+....+.+.++.|+|...+|
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 54221 1344456899999999975 66799887654 458899998877777777777889999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCC
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLP 623 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~ 623 (1103)
++++ ...|++||+..++.++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|. .
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~ 651 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K 651 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence 9887 4459999999988887776655 78999999999999999999999999999854 4566666663 4
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcC------CC---CeeEeccccccc----eeeeEEecCCceeeeeccCCceEe
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVSV 690 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~ 690 (1103)
.+.+|+|++.-.++++|+.||++.|+-.. .+ -++..+++|... |..+.|+
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH----------------- 714 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH----------------- 714 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc-----------------
Confidence 68999999999999999999999988432 11 345566777655 5555555
Q ss_pred cCCCCCCCccceeeccccccccc
Q 001310 691 NEDPKEDVKPEISVEAENKSEVE 713 (1103)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w 713 (1103)
|...++++++.||+|++|
T Consensus 715 -----P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 -----PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----CCCceEEecCCCceEEee
Confidence 677889999999999998
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.6e-21 Score=204.12 Aligned_cols=324 Identities=13% Similarity=0.171 Sum_probs=237.7
Q ss_pred eeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 389 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
..++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.|++.. ...+.|.|++|+|.+...+|+.+- ...+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 3458899999999999999999999999999999999999988743 234579999999998864455444 44466
Q ss_pred EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE----ECCCeEEEEEcCCCC----eeEEecCCCccEEEEEEccC
Q 001310 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN 540 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d 540 (1103)
|-+..-|..+..-. ....|+++ ..++.+..|.-.... .+.....+...|..+.|+.+
T Consensus 468 ivnp~~G~~~e~~~---------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP---------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcc---------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 76655553221110 00111111 234566778654222 12345567789999999999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 620 (1103)
|.||++...++ +...|.|.++........|.... +.+.++.|+|...++++++. ..|+|||+..+..++.+...
T Consensus 533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg- 606 (733)
T KOG0650|consen 533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG- 606 (733)
T ss_pred CceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence 99999987654 36678999988776666665544 78999999999999988875 67999999987777665433
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310 621 GLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1103)
Q Consensus 621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1103)
...|..++.+|.|..|++++.|+.+..+|+.-. ++.+.++.|...++.+++++ .-.
T Consensus 607 -~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~----------------------ryP 663 (733)
T KOG0650|consen 607 -SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK----------------------RYP 663 (733)
T ss_pred -CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc----------------------ccc
Confidence 346889999999999999999999999999855 67889999999999999984 445
Q ss_pred cceeeccccccccccccccCCccceeeeccC---cccccc----EEEEEEecCCcEEEEeecCceEEEe
Q 001310 700 PEISVEAENKSEVEKPLFARPSECQSLLLPS---KVKANK----ISRLTYNNGGQAIFALASNGVHLMW 761 (1103)
Q Consensus 700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~---~~~~~~----i~~~~~s~~g~~l~~~~~dg~i~vw 761 (1103)
++++++.|+++.++.-..........+..|. .+|... |....|+|...+|++++.||+|++|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 5677777787777653321111111111111 234444 8888999999999999999999998
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=4.3e-20 Score=195.21 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=203.7
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
.|..++|-|||..+++.++ ..+.|||+..|..+.+ +++|.+.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 7999999999987665543 6899999999998876 889999999999999999999999
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeee
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1103)
.|..|.+|+.+-...++ ..|.+.|.|+.|+|-.. .|+|++-. ..-+|..+..... .|...+..++.++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976543232 26999999999999988 68888754 4678986554433 2444444444444
Q ss_pred cCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCee
Q 001310 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
+.||.+++.|-.+|+|.+-+-. ++....+. +...+|.+++|+|... .+++.-- ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7899999999999999987543 33333333 3556899999999642 2222211 222333333 3444
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
+..-+... ....|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++.... ..|+.++..|+++.++.|..||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeee
Confidence 33322222 45678889999999999999999999974 566666665432 4689999999999999999999999
Q ss_pred EEEcCC
Q 001310 648 ILETPE 653 (1103)
Q Consensus 648 iw~~~~ 653 (1103)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.2e-23 Score=218.68 Aligned_cols=237 Identities=17% Similarity=0.287 Sum_probs=213.2
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+..|...|.++..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34588999999987789999999999999999987654443 6889999999999999988 899999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999976 5578999999999999999999999999999999999999999999999875
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
+..+.+||...|+....|.+|. +.+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6779999999999999999998 89999999999888888999999999999998888776654 4579999999
Q ss_pred cCCCEEEEEECCC
Q 001310 632 KNGTLLAVIANEN 644 (1103)
Q Consensus 632 ~~g~~l~~~~~dg 644 (1103)
|++..+++|....
T Consensus 248 ~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 248 PDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeecCchhh
Confidence 9999998887653
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.1e-20 Score=180.77 Aligned_cols=281 Identities=16% Similarity=0.155 Sum_probs=207.5
Q ss_pred CCCccceeeccccccccccccccCCc---------cceeeeccCccccccEEEEEEecCC-cEEEEeecCceEEEeecCC
Q 001310 696 EDVKPEISVEAENKSEVEKPLFARPS---------ECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~ 765 (1103)
..|+++++|+.||.+.+||++....- .|........+|...|.++.|-|-. ..+.+++.|.++++||.++
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 57999999999999999998764411 1222222336788999999998854 4556667799999988654
Q ss_pred CccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC---CEEEEEc-CCeEEEEEcCCceeeEEecC
Q 001310 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND---AYLFSAS-GGVISLYIVMTFKTILTIMP 841 (1103)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~---~~l~~~~-dg~i~iwd~~~~~~~~~~~~ 841 (1103)
.. ....+. ....|.+-++||-. -++|+|. +-.|++.|+.+|...+++.+
T Consensus 134 lQ----------------------~a~~F~-----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 134 LQ----------------------EAVDFK-----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred ce----------------------eeEEee-----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 32 122222 34456666666643 3566666 46799999999999999999
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEE--------------eccCCCCEEEEEEccCCCEEEEEeC
Q 001310 842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISK--------------LEGHSKRVTGLVFSDALNILVSSGG 906 (1103)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~--------------l~~h~~~V~~l~~s~dg~~l~s~s~ 906 (1103)
|.+.|.++.|+|...-.||+|+.||.|++||++.. .+... -.+|.+.|..++|+.||.++++++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 99999999999976778999999999999999864 22222 2357889999999999999999999
Q ss_pred CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE-EEeCCeEEEEECCCceEEEEeeCCCCcCeEEEE
Q 001310 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCLKQWFPISSVPISQAT 985 (1103)
Q Consensus 907 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~-~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~ 985 (1103)
|..+++|+...|+-......+........ ..+. +. +-+...++ .-.++.+.++.+-+|+.+.. ...|...|.+.+
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~-l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTS-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRR-LSTHLKRINCAA 342 (397)
T ss_pred ccceEEeecccCccccccccccccccccc-ceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEe-eecccceeeEEe
Confidence 99999999998874332222221111110 0111 23 33333333 34678999999999999987 567899999999
Q ss_pred EccCCCEEEEEecCCcEEEEeC
Q 001310 986 FSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 986 fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
|-||=+.+.++..|+.|..|-.
T Consensus 343 ~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 343 YRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCchhhhhccccCCccccccc
Confidence 9999999999999999999976
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.4e-21 Score=207.39 Aligned_cols=242 Identities=16% Similarity=0.235 Sum_probs=197.4
Q ss_pred EEEEec-CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC-CE
Q 001310 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 816 (1103)
Q Consensus 739 ~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~ 816 (1103)
.+.|.. +.++|++++..|.|.+||+..... ...+.. +. .|...+.++.|++-. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccE
Confidence 344442 456788999999999999876311 000111 11 499999999999864 66
Q ss_pred EEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccCCCCEEEEEE
Q 001310 817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 894 (1103)
Q Consensus 817 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 894 (1103)
|++|+ ||.|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 77777 8999999999999999999888999999999988899999999999999999864 567888999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-E---eCCeEEEEECCCceEE
Q 001310 895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCL 970 (1103)
Q Consensus 895 s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~---~d~~v~iwd~~~~~~~ 970 (1103)
+|++.+|||||.|++|+|||..+++.....++.+.. ++.++.|-|+-.+.++ + .|..|+|||++..-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 999999999999999999999987765555555543 6999999999876554 2 6889999999988777
Q ss_pred EEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCc
Q 001310 971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
...+..|...++.++|-. |-..|.+++.||+|..-.+++.
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777888999999999965 5567889999999877665544
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.2e-19 Score=176.84 Aligned_cols=295 Identities=15% Similarity=0.260 Sum_probs=214.2
Q ss_pred EecccCCcCceEEEecC----CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~sp----dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
+.+++|..+|..++|.+ +...++|+.+. ..+.||......-+.. ++...-..|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence 45678989999999984 33335565544 6788998865432211 12222335888899999
Q ss_pred ECCCC----CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
|+-|. -+||+|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ +++++|.|.+|++||+++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 98753 478999999999999999987766 67899999999999999877 89999999999999999999998
Q ss_pred Ee---ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE------Ee----------------------cCC
Q 001310 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP 528 (1103)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~----------------------~~~ 528 (1103)
.| .+|.+.|.++.|+. +|.+|++++.|.++++|++...+... .+ ..|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 57999999999965 66799999999999999997432111 00 112
Q ss_pred CccEEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCee-------------EEEEecccccCCceEEE--EEcCCCCE
Q 001310 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQ 592 (1103)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~~--~~~~~~~~ 592 (1103)
...|.|+.|- |.++++-+. ++.|..|.. +-++. +..+.-. ...+.-+ +|.|-++.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence 2222233332 456665443 557999987 22221 1222222 2445444 45566889
Q ss_pred EEEEeCCCcEEEEECCCCeeE--EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 593 ILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
|+.|...|.|++||++..++. .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999876652 333333444678999999999999999999999999854
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.9e-19 Score=171.83 Aligned_cols=256 Identities=13% Similarity=0.164 Sum_probs=191.0
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCC-ccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1103)
-.+|..-|+++.|.+-|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 45799999999999999999999999999999965432 33444567899999999999663 66 899999999999
Q ss_pred EEeCCC---------CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE------ec-------
Q 001310 469 VWDAVT---------GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------YD------- 526 (1103)
Q Consensus 469 iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~------- 526 (1103)
||.-.. .....++......|++++|.|..-|-.+++++.||.+|||+......... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 12345667788899999999999999999999999999998754332221 11
Q ss_pred CCCccEEEEEEccC---CCEEEEEecCC-CCceeEEEEeCCCCe----eEEEEecccccCCceEEEEEcCCC----CEEE
Q 001310 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1103)
Q Consensus 527 ~~~~~i~~~~~s~d---g~~l~~~~~~~-~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 594 (1103)
.+..+..|+.|+|. ..++++++.+. ...+.++||....+. .+..+.++. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23346788899873 45677776431 122356677654332 344455555 999999999973 4678
Q ss_pred EEeCCCcEEEEECCCCe-----------------eEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 595 ~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
+++.|| |+||.+.... .+..+. ..+|...|..+.|+-.|..|++.++||.+++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 111221 234456799999999999999999999999997653
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=6.2e-20 Score=194.18 Aligned_cols=289 Identities=17% Similarity=0.212 Sum_probs=206.3
Q ss_pred CCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q 001310 344 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1103)
Q Consensus 344 pdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iw 423 (1103)
|+.+.+||.+..||.|.++|.....-... ...|. ....|.+.|..+.|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~e-----------e~~lk--~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLE-----------ERQLK--KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchh-----------hhhhc--ccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34556899999999999999865432200 00111 155799999999999977789999999999999
Q ss_pred EecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc---------------------------
Q 001310 424 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------------- 476 (1103)
Q Consensus 424 d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------------------------- 476 (1103)
|++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||+.-..
T Consensus 128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998876543 47799999999999999876 89999999999999985322
Q ss_pred eeEEeecCCCceEE-EEeeecCCccEEEEEEC-CCeEEEEEcCCCCeeEE--------ecCC---CccEEEEEEccCCCE
Q 001310 477 RTYSFEGHGAPVYS-LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSANGRR 543 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~~~~s~dg~~ 543 (1103)
.+.....+...|.+ +......|...|++++. |+.|+|||++....... +..+ ...+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 01112234444433 11111235678888887 99999999987654332 2222 235778888888899
Q ss_pred EEEEecCCCCceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-EEEcCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTIDAGG 620 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~ 620 (1103)
|++... |+.|+.||+.+- ..+..+.++......+. -..+|++.++++|+.|...++|.+.+.+.- ..+.+
T Consensus 286 L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G-- 358 (720)
T KOG0321|consen 286 LFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG-- 358 (720)
T ss_pred EEEEec----CCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhC--
Confidence 887765 666999999754 33445555441112222 346899999999999999999999876543 33333
Q ss_pred CCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCC
Q 001310 621 GLPENPRICFNKN-GTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 621 ~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
+...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3556899999873 234666699999999999655
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.7e-21 Score=208.80 Aligned_cols=238 Identities=11% Similarity=0.206 Sum_probs=212.3
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+..--.+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44567888999999866665 899999999999999865544432 7799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
..+|++|+.+|+|++||++.++.++ +|.||...+..+.|+|-+. +.++|+.|+.+++||+....|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999987766 7889999999999999999 7899999999999999999999999999999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
|..+.|. ++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+. +..+.+||+++.+.
T Consensus 157 v~~l~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEeec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 9999995 58899999999999999999999999999999999999999999988888876 66799999999888
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEEeCC
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 599 (1103)
+....... ..|.+.+|+|++..+++|...
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchh
Confidence 87777665 789999999999988887654
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.6e-19 Score=181.29 Aligned_cols=308 Identities=15% Similarity=0.170 Sum_probs=219.0
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
.+..|+ +|..+.|.+++...+|+|+.|..|+||.++.+..-... ........|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 345665 99999999988756999999999999999765433210 0001123488999999999999999
Q ss_pred CEEEEEeCCCeEEEEEec--------C-----CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999877 3 122223446789999999999999999 8999999999999999999
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-------------------CCC----ccE
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC 532 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~i 532 (1103)
..+..+..|...|..++|.|. ++++++-+.|...+.+.+.......... .|. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 999999999999999999664 4788888888866666554332211100 000 124
Q ss_pred EEEEEccCCCEEEEEecCCCC-----ceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCC-----------------
Q 001310 533 TRMAYSANGRRLFSCGTSKEG-----ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------------- 589 (1103)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------------- 589 (1103)
..++|+|||..+++...--+. .+..++++-.. .++...+.+.. .....+.|+|-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 568999999999865431110 22334554331 12233333333 44455555431
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1103)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~ 655 (1103)
-+.+++......|++||.++-.++.....- +...++.++|++||..+++.+.||-..+...+..+
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 122333334578999999988877766432 34678999999999999999999998887776553
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.4e-20 Score=200.61 Aligned_cols=286 Identities=16% Similarity=0.252 Sum_probs=217.1
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccc-eEecc---ccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~l~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
....+|+..++-..|+.++.. .+.||.+......... ...++ -...+..++|.....+ +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 455677788888888888654 4788877654321111 01111 1124567788754444 8999999999999999
Q ss_pred CC---CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCEEEEEe
Q 001310 473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG 548 (1103)
Q Consensus 473 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~ 548 (1103)
.. .+.+..|..|...+.+++|+... ..+|++|+.||+|++||++......++......|..+.|+| .+..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 66778899999999999999764 47999999999999999999999988888888999999999 556666665
Q ss_pred cCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
. .|.+++||++.. +....+..|. ++|.++.|+|++.+|++||.|+.|+|||+.+++.-.....+. ..++.+
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 678999999864 4455666666 999999999999999999999999999998765433333222 357899
Q ss_pred EEEecCCC-EEEEEE--CCCeEEEEEcCCC-CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 628 v~~s~~g~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
|.|-|+.. .|++++ .|..|+|||+... -+..++..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999765 455554 3788999999866 4556778888888888887 345566777
Q ss_pred ecccccccccc
Q 001310 704 VEAENKSEVEK 714 (1103)
Q Consensus 704 ~~~d~~i~~w~ 714 (1103)
++.|+++..-.
T Consensus 328 ~sKD~tv~qh~ 338 (839)
T KOG0269|consen 328 CSKDGTVLQHL 338 (839)
T ss_pred ecCccHHHHhh
Confidence 77777765443
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=191.14 Aligned_cols=287 Identities=16% Similarity=0.138 Sum_probs=202.3
Q ss_pred CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCe
Q 001310 746 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 824 (1103)
Q Consensus 746 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~ 824 (1103)
...|+.+..+|.|.++|....... ++ ++.+.. ...|.+.|..+.+.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~e--e~~lk~---~~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LE--ERQLKK---PLAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hh--hhhhcc---cccccceeEeeccCCCceeEEEccCCce
Confidence 345777788899999986553321 01 110111 115999999999999777777776 789
Q ss_pred EEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-------------------------
Q 001310 825 ISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE------------------------- 877 (1103)
Q Consensus 825 i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~------------------------- 877 (1103)
+++||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999988877 889999999999999888999999999999999986321
Q ss_pred --eEEEeccCCCCEEE---EEEccCCCEEEEEeC-CCeEEEEEcCCCceeee-eeeec--CCCcccCCCCceEEEEcCCC
Q 001310 878 --VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTC-RSLQT--PDGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 878 --~~~~l~~h~~~V~~---l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~v~~l~fs~dg 948 (1103)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ ..... ...+..-...+.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 01222345555665 666678899999988 99999999987442211 01111 11111112357778888888
Q ss_pred CEEEE-EeCCeEEEEECCCceEEE-EeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCC
Q 001310 949 TRFLL-VHETHLAIYEAEELTCLK-QWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024 (1103)
Q Consensus 949 ~~l~~-~~d~~v~iwd~~~~~~~~-~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~ 1024 (1103)
.+|.+ +.|+.|+.|++.+...-. ..+.++ ..--..-..|||+.+|++|+.|...++|.+.+-+.--...
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------- 356 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------- 356 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------
Confidence 88887 699999999998643321 112233 1111223468999999999999999999998766432222
Q ss_pred CCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
.||.-.|+++.++.++. .-++++++|-++++|++.
T Consensus 357 -----------~Ght~eVt~V~w~pS~~--t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 357 -----------LGHTREVTTVRWLPSAT--TPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -----------hCcceEEEEEeeccccC--CCceeeccCcceEEEecc
Confidence 25777788766666655 568888999999999994
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.7e-19 Score=170.71 Aligned_cols=268 Identities=14% Similarity=0.208 Sum_probs=193.9
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg 408 (1103)
.+|.+-|.++.|.+-|++ +|+|+.|++|+|||.....---. . ....+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~-------~--------Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS-------C--------TSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE-------E--------eeeEEecCCcEEEEEecCcccc
Confidence 589999999999999996 89999999999999755432211 1 111556999999999976 59
Q ss_pred CEEEEEeCCCeEEEEEecC------CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----
Q 001310 409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---- 478 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---- 478 (1103)
+.+|+++.|+++.||.-.. +..-....++......|+.+.|.|.-..+.+++++.||.+|||+.-..-.+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997621 112223345667788999999999877779999999999999986543322
Q ss_pred --EEee-------cCCCceEEEEeeecCCc-cEEEEEECC-----CeEEEEEcCCCCee----EEecCCCccEEEEEEcc
Q 001310 479 --YSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA 539 (1103)
Q Consensus 479 --~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~ 539 (1103)
..+. .+..+-.|+.|+++.-. .+|+.|+.+ +.+.||........ ..+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2222 35566677777755432 456666655 47899987765532 25678888999999999
Q ss_pred CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------eEEEEecccccCCceEEEEEcCCCCEEEEEeC
Q 001310 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1103)
Q Consensus 540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 598 (1103)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 52 34566654 44 9999887311 12333333444599999999999999999999
Q ss_pred CCcEEEEECCC---CeeEEEEcCC
Q 001310 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1103)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1103)
||.||+|...- .+++..+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997643 3344445443
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-19 Score=183.34 Aligned_cols=294 Identities=16% Similarity=0.215 Sum_probs=216.9
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE--ECCCeEEEEEcCCCCeeEeccccccceeee
Q 001310 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKL 670 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~ 670 (1103)
+..++....+++||....+....+..+...+.+.++.|+.... |+++ +.|..+++|.-.....
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~-------------- 69 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP-------------- 69 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC--------------
Confidence 3344445679999998877777766666666789999998654 4444 4567788886443200
Q ss_pred EEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEE
Q 001310 671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 750 (1103)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 750 (1103)
+|-+-... ....-.|++......+++
T Consensus 70 --------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~ 95 (673)
T KOG4378|consen 70 --------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEI 95 (673)
T ss_pred --------------------------------------ccceeecc----------------ccchHHHHhhhhcceeee
Confidence 00000000 011222333344457899
Q ss_pred EeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC-CeEEEEE
Q 001310 751 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYI 829 (1103)
Q Consensus 751 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-g~i~iwd 829 (1103)
+++..+.|+|||+... +....+. +|...|+++.+.-...+||++++ |.|.|..
T Consensus 96 sgG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred ccCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence 9999999999997632 1111222 48999999999999999999995 7899999
Q ss_pred cCCceeeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-ccCCCCEEEEEEccCC-CEEEEEeC
Q 001310 830 VMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGG 906 (1103)
Q Consensus 830 ~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg-~~l~s~s~ 906 (1103)
+.++....+|....+ .|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.
T Consensus 150 ~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 150 TKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred cccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence 999988888876544 56689999966678888999999999999987766554 5699999999999964 77889999
Q ss_pred CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEE
Q 001310 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT 985 (1103)
Q Consensus 907 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~ 985 (1103)
|+.|.+||........ ++. ...+...++|+++|.+|++| ..|.|..||++...........|...|++++
T Consensus 230 Dkki~~yD~~s~~s~~--~l~-------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTD--RLT-------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred cceEEEeecccccccc--eee-------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 9999999998744222 111 11268899999999999997 8899999999987766666788999999999
Q ss_pred EccCC
Q 001310 986 FSCDC 990 (1103)
Q Consensus 986 fs~dg 990 (1103)
|-+..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 97754
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2e-16 Score=184.42 Aligned_cols=373 Identities=23% Similarity=0.391 Sum_probs=286.6
Q ss_pred EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeecCCC-ceEEEEeeecCCcc-EEEEEEC-CCeE
Q 001310 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKI 511 (1103)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 511 (1103)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 9999
Q ss_pred EEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC
Q 001310 512 KAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1103)
Q Consensus 512 ~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1103)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 210 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDG 210 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCc
Confidence 9999998 7777788889999999999999998877743 36779999999988888888866 899999999999
Q ss_pred C-EEEEEeCCCcEEEEECCCCeeEE-EEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe-eEeccccccce
Q 001310 591 D-QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNL 667 (1103)
Q Consensus 591 ~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i 667 (1103)
. .+++++.|+.|++||...+..+. .+..+... . ...|+|++.++++++.|+.+++|+...... +...
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------- 280 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL------- 280 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence 8 44555899999999988777777 56655432 2 228999998999999999999999886532 1100
Q ss_pred eeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc
Q 001310 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1103)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 747 (1103)
..|...+.++.|.|++.
T Consensus 281 ---------------------------------------------------------------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 281 ---------------------------------------------------------------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ---------------------------------------------------------------ecCCccEEEEEECCCCC
Confidence 11456778888999888
Q ss_pred EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE--cCCeE
Q 001310 748 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVI 825 (1103)
Q Consensus 748 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~--~dg~i 825 (1103)
.+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 888888888888887654321 11111 11366678888884343556555 36889
Q ss_pred EEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEE
Q 001310 826 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 904 (1103)
Q Consensus 826 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 904 (1103)
.+|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..++++
T Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
T COG2319 354 RLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430 (466)
T ss_pred EeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence 99999887733333322 2288999998 7 55555 8899999999999988777776554789999999999999999
Q ss_pred eCCCeEEEEEcCC
Q 001310 905 GGDAQIFVWDVDG 917 (1103)
Q Consensus 905 s~dg~I~iwd~~~ 917 (1103)
+.++.+++|+...
T Consensus 431 ~~~~~~~~~~~~~ 443 (466)
T COG2319 431 SSDNTIRLWDLKT 443 (466)
T ss_pred cCCCcEEEEeccC
Confidence 9999999999987
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.5e-17 Score=188.45 Aligned_cols=369 Identities=22% Similarity=0.349 Sum_probs=274.8
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC-eeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEE-C
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~-s 405 (1103)
.+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678999999999999998 67888899999999998886 3332 22322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCeEEEEEecC-CCccccceEeccccccEEEEEEecCCCceEEEEEcC-CCceEEEeCCCCceeEEe
Q 001310 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1103)
Q Consensus 406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 481 (1103)
+++. +++..+. |+.+.+|+... .... ..+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 4322 36789999999999999999 6777775 999999999999999999
Q ss_pred ecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+|...|.++++. +++. .+++++.|+.+++||...+.... .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55666999999999888666666 566666664 3389999988886654 667999
Q ss_pred EeCCCCee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc--CCCCCCCCceEEEecCCCE
Q 001310 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 636 (1103)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~g~~ 636 (1103)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+........... .+. ..+..+.|.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE--GPVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccC--CceEEEEECCCCCE
Confidence 99987665 44444444 889999999988899888888999999998887776665 332 25788888433356
Q ss_pred EEEE-ECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee-ecccccccccc
Q 001310 637 LAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEK 714 (1103)
Q Consensus 637 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~~w~ 714 (1103)
++.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWD 398 (466)
T ss_pred EEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEe
Confidence 6665 6788999999988762222222211 4445554 22 22333 57788999999
Q ss_pred ccccCCccceeeeccCcccc-ccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310 715 PLFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~ 765 (1103)
........... .. ..+....+++++..++.++.++.+++|+...
T Consensus 399 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 76432221111 11 6888999999999999988999999998654
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.4e-19 Score=183.82 Aligned_cols=244 Identities=15% Similarity=0.180 Sum_probs=188.2
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEe------------------ccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l------------------~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
-|+|+|.|+.|..|.|||+.-...+.+...| .+|+..|.+++|+..-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 3789999999999999998643332222222 379999999999988777 899999999999
Q ss_pred EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
+||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 9999999999999999999999999976 557999999999999999985333222222345788899999877766665
Q ss_pred cCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1103)
. .+|+++-+|++.. +++.+++.|. +.|.++++++... .+++++.|+.|++|++..-.........-......
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccccccee
Confidence 4 2788999999865 8889999888 8999999988754 56779999999999987544322221111122345
Q ss_pred eEEEecCC-CEEEEEECCCeEEEEEcCCCCeeE
Q 001310 627 RICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1103)
Q Consensus 627 ~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1103)
|+++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 67777754 367778888889999998775543
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=4.4e-19 Score=176.10 Aligned_cols=258 Identities=16% Similarity=0.191 Sum_probs=190.3
Q ss_pred CCCCCeeEEEEecCCCEEEEE--c-CCeEEEEEcCC----------------ceeeEEecCCCCCeeEEEEcCCCCCEEE
Q 001310 800 NSQEAVPCFALSKNDAYLFSA--S-GGVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1103)
Q Consensus 800 ~~~~~v~~l~~s~d~~~l~~~--~-dg~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1103)
+|.+.+..+..++-++-.+++ + .|.|+||++.. .+.+.++.+|...=.+|+|||-..-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477778888877765444444 4 49999999852 3456678889989999999995455788
Q ss_pred EEeCCCeEEEEEcCCcee---EEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310 861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1103)
Q Consensus 861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1103)
+|.--+.|++|...+|.- ...|.+|+..|-.|+|||. ...|+|||.||+|+|||+..+........ ..|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~--- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHN--- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccC---
Confidence 898889999999998753 2557789999999999996 47899999999999999999865443333 2232
Q ss_pred CCceEEEEcCCCCEEEEE-eCCeEEEEECCC---ceEEEEeeCCCCcCeEEEEEccC-CCEEEEEecCCcEEEEeCCCce
Q 001310 937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 937 ~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
+.|..+.|+.+-.+||+| .||++.|||+++ ++.+.. +..|..+|+++.|+|. ...+++++.|..|.+||+.-..
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 269999999999989986 789999999975 455555 6679999999999984 4678888899999999997432
Q ss_pred e---EEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1012 V---QCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1012 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
- ..... ..++. .....+.|-.-.+..+. .+.||++-+.++++.+.|| +.||..
T Consensus 382 D~ee~~~~a-~~~L~---dlPpQLLFVHqGQke~K--evhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 382 DEEEIDQEA-AEGLQ---DLPPQLLFVHQGQKEVK--EVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred Chhhhcccc-ccchh---cCCceeEEEecchhHhh--hheeccCCCCeEEEecccc-eeEEEe
Confidence 2 11111 00111 11122333332333344 6789999999999999999 466653
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=8.5e-19 Score=178.63 Aligned_cols=310 Identities=13% Similarity=0.110 Sum_probs=223.1
Q ss_pred CCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcc
Q 001310 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732 (1103)
Q Consensus 653 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 732 (1103)
.-......+.+...|++++|.|. ...+.+++|+..|.|-+||+....+.......+. .
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--~ 232 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--P 232 (498)
T ss_pred cceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec--c
Confidence 33444556667788899999873 3457788999999999999975444444443333 4
Q ss_pred ccccEEEEEEecCC-cEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310 733 KANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 811 (1103)
|..+|.++.|+|.. ..+++.+.||++++-|+....... ++..+ .....+..+.|+
T Consensus 233 hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~--------------------v~s~~----~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 233 HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE--------------------VLSLD----TDNIWFSSLDFS 288 (498)
T ss_pred CCccccceEecCCChhheeeeccCceeeeeeecchhhHH--------------------HhhcC----ccceeeeecccc
Confidence 89999999999954 568899999999998876543200 11100 134566778888
Q ss_pred cCCCEEEEEcC-CeEEEEEcCCcee-eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEeccC
Q 001310 812 KNDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGH 885 (1103)
Q Consensus 812 ~d~~~l~~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h 885 (1103)
.+...++.+.+ |...+||..++.. ...+.-|...|++++++|....+||+++.|++++|||++.-. ++-....|
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H 368 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH 368 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence 88877777774 8899999987654 566777888999999999888899999999999999998632 12333459
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEE
Q 001310 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 962 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iw 962 (1103)
...|.+..|||++..|++.+.|..|+|||..- ........+.....+..+ ....-.+|.||..++++| .-..|-|+
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc-ccchhheeCCCccEEEEeccCcceeEE
Confidence 99999999999998899999999999999951 111111122211111000 134567899999999997 67789999
Q ss_pred ECCCceEEEEeeCCCCcCeEE-EEEccCCCEEEEE-ecCCcEEEEeCCC
Q 001310 963 EAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTS-FVDGTLSIHEASN 1009 (1103)
Q Consensus 963 d~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~-~~dg~v~vWd~~~ 1009 (1103)
|-..++.+..+.......|.+ ..|.|-+..+++| +..|.|+||--+.
T Consensus 448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 999999888765555555655 4688987755555 4668888886543
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.9e-20 Score=209.09 Aligned_cols=253 Identities=15% Similarity=0.251 Sum_probs=206.9
Q ss_pred CccEEEEEECCCCCE----EEEEeCCCeEEEEEecC---CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 396 GVSVNRVVWSPDGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~----las~~~d~~i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
..+.+.++|++.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.... +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 467889999997776 88889999999999876 4444445567789999999999998876 899999999999
Q ss_pred EEeCCCCceeEEee--cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc--cEEEEEEccCCCEE
Q 001310 469 VWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRL 544 (1103)
Q Consensus 469 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~l 544 (1103)
|||+..-+.-.+.. ...+.|.+++|+- ...+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..-
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998866555542 2457799999974 3557899999999999999999887776665544 57889999987654
Q ss_pred EEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC
Q 001310 545 FSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1103)
+....+.+....|.+||++. ...++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~-- 296 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG-- 296 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--
Confidence 44344456688999999874 45677788888 899999999987 778889999999999999999999998743
Q ss_pred CCCceEEEecCCC-EEEEEECCCeEEEEEcCCCC
Q 001310 623 PENPRICFNKNGT-LLAVIANENRIKILETPESN 655 (1103)
Q Consensus 623 ~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~~ 655 (1103)
..+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 4688999999655 88999999999999988653
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=9.9e-19 Score=179.14 Aligned_cols=289 Identities=13% Similarity=0.180 Sum_probs=217.9
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE-EEEEeCCCeEEEEEecCCCc-cccc
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL-LGVAYSKHIVQLYAYHGGSD-ARQQ 434 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~-las~~~d~~i~iwd~~~~~~-~~~~ 434 (1103)
.+++|||+...+....+. .....-.+.++.|+....+ +|+.+.|..|++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 579999987655432100 0111234889999986642 33446778899997654311 1111
Q ss_pred eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEE
Q 001310 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514 (1103)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 514 (1103)
....+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++. .+.+|++++..|-|.+.
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEE
Confidence 122222 223333333334 899999999999999998888889999999999999854 55799999999999999
Q ss_pred EcCCCCeeEEecCC-CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE-
Q 001310 515 LYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ- 592 (1103)
Q Consensus 515 d~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 592 (1103)
.+.++.....+... +..+.-+.|+|..+.+++...+ +|.|.+||+.....+..+.. .|..+...++|+|....
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEAL 223 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccce
Confidence 99988877777766 4456689999998887766542 77899999988777665543 23588899999997654
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeEeccccccceeeeE
Q 001310 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLS 671 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~ 671 (1103)
|++.+.|..|.+||.........+... .+...++|+++|.+|+.|...|.|..||+... .++..+..|...|++++
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EEEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 566899999999999988777777654 34789999999999999999999999999854 67888899999999999
Q ss_pred EecCC
Q 001310 672 VNPIS 676 (1103)
Q Consensus 672 ~~~~~ 676 (1103)
|-|..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 98754
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=171.95 Aligned_cols=259 Identities=16% Similarity=0.199 Sum_probs=182.9
Q ss_pred ccCCcCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEEEECC-C
Q 001310 331 IEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D 407 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-d 407 (1103)
..|.+.+..+.-++-|+ .++|+=+..|.|.|||+...-.. ..-.+.+-+ .... ....+.+|.+.=+.++||| .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~--Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFR--PLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccC--ceEEecccCccceeeeccccc
Confidence 46777888888877653 35666677899999998532110 000000000 0011 1223778999999999999 2
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC---ceeEEeecC
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGH 484 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~ 484 (1103)
-..|++|.--+.|++|...+|.-..-...+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+ .++.+ +.|
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh 301 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KAH 301 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence 334778877788999999987644444467789999999999998776 8999999999999999988 34443 889
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC---CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1103)
.+.|+.|.|+.. -.+|++|+.||+++|||++.- +.+..++.|..+|+++.|+|.....+.++. .+.+|.+||
T Consensus 302 ~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWD 376 (440)
T KOG0302|consen 302 NSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWD 376 (440)
T ss_pred CCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEEE
Confidence 999999999643 349999999999999999864 456688999999999999996555444432 267799999
Q ss_pred CCCCee----------------EEEEecccccCCceEEEEEcCCC-CEEEEEeCCCc
Q 001310 562 ESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHV 601 (1103)
Q Consensus 562 ~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 601 (1103)
+....- -+.+-.|. ....+..+.|++.- .++++.+.||.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccce
Confidence 863211 01122222 12467778888764 35666667763
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=4.6e-18 Score=165.37 Aligned_cols=287 Identities=14% Similarity=0.211 Sum_probs=206.8
Q ss_pred eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccce--eeeeccCCCccEEEEEEC-------CCC
Q 001310 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWS-------PDG 408 (1103)
Q Consensus 338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~s-------pdg 408 (1103)
..+.|||||.- +.+-+.|..+.+|++...-.-..- .....+ ...+--.....|...+|- |+.
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~--------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKA--------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCC--------CCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 35689999994 677789999999998532110000 000000 000011134567777764 678
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEecccccc---EEEEEEecCCCceEEEEEcCCCceEEEeC-CCCcee--EEe-
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF- 481 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~---v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~- 481 (1103)
.++|+.+.+.-|++||.-+|+...... .-.|... ..+++|+|||. .|++ +....|+++|+ +.|+.- +..
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 899999999999999999997544322 2235443 46899999999 4654 45779999998 455432 221
Q ss_pred ----ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 482 ----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 482 ----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
.+..+.+.+++|+|. +...++.++...++-|+.-........+.++.+.|+.+.|.++|+.|++++.. +-.|
T Consensus 200 ~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKI 275 (406)
T ss_pred hcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeE
Confidence 133677888899876 45689999999999999999999999999999999999999999999998863 4569
Q ss_pred EEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCC
Q 001310 558 VEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGT 635 (1103)
Q Consensus 558 ~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~ 635 (1103)
..||++. +.++..+..|....+.-.-....|++++|++|+.||.|++||+.+ +..+..+..+. ..++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc
Confidence 9999985 556667777663222333355678899999999999999999998 66666665553 3589999999877
Q ss_pred EEEEEECC
Q 001310 636 LLAVIANE 643 (1103)
Q Consensus 636 ~l~~~~~d 643 (1103)
++++++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 77777653
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.2e-17 Score=174.03 Aligned_cols=603 Identities=12% Similarity=0.124 Sum_probs=357.1
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC------
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------ 407 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd------ 407 (1103)
...-.++.|+|.| ++|-|+. ..|.+-|..+-+.+.. +.-|...|+.+.|+|-
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 3457789999999 6788775 6789999988887765 5568999999999873
Q ss_pred C------CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec---CCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 408 G------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 408 g------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
+ -+||++...|.|.+||...+..+. .+..|..++..++|-+ +.+. +|+.-....++.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 1 267888888999999999886554 5778889999999865 3434 5666667789999999999999
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC------eeEEec-CCCc---------------------
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYD-APGL--------------------- 530 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-~~~~--------------------- 530 (1103)
...........++.+.|-.. ..+..-+..|.+.+.+.-... ....+. .+..
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 88776667777787776543 445555555666655432111 111111 1100
Q ss_pred ----cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC--CCEEEEEeCCCcEEE
Q 001310 531 ----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKI 604 (1103)
Q Consensus 531 ----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 604 (1103)
-...++|+|.-+.++.....+ -+.++|++-...+....-.. +.+.-+.+-|+ ...++++-.||.+.+
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEE
Confidence 012356788655544444433 39999999888887776655 55566666665 457899999999999
Q ss_pred EECCCC----------------eeEEEEcCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCCCeeEecc------
Q 001310 605 WDMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------ 661 (1103)
Q Consensus 605 wd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~------ 661 (1103)
|-.+.. +....+..-... .....+..|. ...+++.-.+|...+|.+.+++.-....
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL 379 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence 976541 111111111111 1122233343 4455666667888889888654321111
Q ss_pred -------------------------ccccceeeeEEecCCceeeeeccCCceEecCCCCCC--Cccceeecccccccccc
Q 001310 662 -------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED--VKPEISVEAENKSEVEK 714 (1103)
Q Consensus 662 -------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~s~~~d~~i~~w~ 714 (1103)
+|.....+....|........... +...|. -.+++.|...|+|.+.|
T Consensus 380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p------~~n~~~~~~pLvAvGT~sGTV~vvd 453 (1062)
T KOG1912|consen 380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP------GGNTPAGTVPLVAVGTNSGTVDVVD 453 (1062)
T ss_pred cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC------CCCccceeeeeEEeecCCceEEEEE
Confidence 111112222222111110000000 000111 23567899999999999
Q ss_pred ccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeec
Q 001310 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 794 (1103)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1103)
+.++....... .|...|.++.|....+.+-.+... .-. ........+.+-+..+|......
T Consensus 454 vst~~v~~~fs------vht~~VkgleW~g~sslvSfsys~-~n~------------~sg~vrN~l~vtdLrtGlsk~fR 514 (1062)
T KOG1912|consen 454 VSTNAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSH-VNS------------ASGGVRNDLVVTDLRTGLSKRFR 514 (1062)
T ss_pred ecchhhhhhhc------ccccceeeeeeccceeEEEeeecc-ccc------------cccceeeeEEEEEcccccccccc
Confidence 87654443333 388899999998877744333321 000 00000123556667777644433
Q ss_pred cCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEc-CC---------------CCC
Q 001310 795 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNN 857 (1103)
Q Consensus 795 ~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~ 857 (1103)
.++. ....+|+.+..|.-|+|++..- +.-+.+||+.+..+++...-.-.-++.+.|+ |. ..+
T Consensus 515 ~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n 593 (1062)
T KOG1912|consen 515 GLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSEN 593 (1062)
T ss_pred cCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhc
Confidence 3332 5688999999999999999997 6779999998877766554444458888888 31 112
Q ss_pred EEEEEeCCCeEEEEEcCC-------cee-EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC
Q 001310 858 VIAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 929 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 929 (1103)
..+..+ +..+++.+.. +.. ....+...-.+.+++|- +..|+.|..+|.+.+||+....-...+-...+
T Consensus 594 ~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ 669 (1062)
T KOG1912|consen 594 LVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGVRDSPDP 669 (1062)
T ss_pred eeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCccCCCCc
Confidence 233333 2223333221 111 11111112233446664 66899999999999999876321110001111
Q ss_pred CCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 930 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 930 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
. ....-..+-|....+++-...-+.+||.+....+..+ .+. +..+..+.+......++ ..|.++|+-.+
T Consensus 670 r------a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m 740 (1062)
T KOG1912|consen 670 R------AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVM 740 (1062)
T ss_pred h------hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEec
Confidence 1 1233344455544555555666899999988888774 333 33444555554444443 34557777665
Q ss_pred CCc
Q 001310 1008 SNL 1010 (1103)
Q Consensus 1008 ~~~ 1010 (1103)
...
T Consensus 741 ~mk 743 (1062)
T KOG1912|consen 741 PMK 743 (1062)
T ss_pred ccc
Confidence 543
No 167
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=7.7e-18 Score=164.04 Aligned_cols=407 Identities=11% Similarity=0.128 Sum_probs=257.6
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
-+.|||+|+++|+++.- .+.|-|.++-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999766 6888888875543322 22456889999998875 566678899999999999988888
Q ss_pred eecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
+.....++.+++|+| +| +.|.+...|-.|.+|.+.+.+.... ......+..++|+|||++.+.++.. |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 888889999999965 55 5677778899999999987665442 3334456889999999999988652 22223333
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 639 (1103)
..-+....++.+.... -..+.+.|+|||+.+++ ||---.-.+.... .+ -.+..++|+|.+++|++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe--~~-lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE--RG-LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeee--ec-cceeEEEeccccceEEe
Confidence 3333344455555544 56788999999988775 4322111111111 11 24788999999999999
Q ss_pred EECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1103)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 719 (1103)
|+.|+.+|+.+--+-+.+..+- |...+ .|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997655433332211 00000 00010000000000
Q ss_pred CccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCee--ecCCCCCceeeccCC
Q 001310 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL--YQPRHGPQFMVNDTT 797 (1103)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 797 (1103)
. -.-...++.|.|..- ...+|....... ......+++ ..+.+ +.
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y-----E~~~~pv~~~~lkp~t-------D~- 314 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIY-----EQQMTPVKVHKLKPPT-------DF- 314 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhh-----hhhhcceeeecccCCC-------CC-
Confidence 0 000112233333211 000111000000 000000000 00001 01
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEcC---CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001310 798 DSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 874 (1103)
Q Consensus 798 ~~~~~~~v~~l~~s~d~~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 874 (1103)
.+..-.+.-++|++|..++++-.| +.+-+||+...+....+. ...+|.+..|.| +...|+.+.....+++|...
T Consensus 315 -pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 315 -PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCC
Confidence 123556778999999999999986 569999998766544443 567899999999 78888888888889999877
Q ss_pred CceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCe
Q 001310 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909 (1103)
Q Consensus 875 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~ 909 (1103)
....+.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus 392 g~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 392 GPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 5444443 333467999999999999999998874
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.7e-17 Score=166.97 Aligned_cols=298 Identities=12% Similarity=0.139 Sum_probs=216.8
Q ss_pred cccEEEEEEecCCc-EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 734 ~~~i~~~~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
..++.++.|.+++. .+++++.|..|++|.+........+ +.....-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 46788899988877 8999999999999998765431111 0112222233 4999999999999
Q ss_pred CCCEEEEEcC-CeEEEEEcC--------C--------ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310 813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 813 d~~~l~~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1103)
+|..||+|+| |.|.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 345566788999999999999 899999999999999999999
Q ss_pred ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeee---eecCCCcccCC------------CCce
Q 001310 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMTLA------------PSET 940 (1103)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~------------~~v~ 940 (1103)
|.....+.+|...|..++|.|-++++++-+.|...+.+.+.........- +....+..... .-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777666533222111 11111110000 1235
Q ss_pred EEEEcCCCCEEEEE-----eCC-----eEEEEECCCceEEEEeeCCCCcCeEEEEEcc------------------CCCE
Q 001310 941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 992 (1103)
Q Consensus 941 ~l~fs~dg~~l~~~-----~d~-----~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~------------------dg~~ 992 (1103)
.++|+|||.+|++. ..+ ..++|+-.........+++...++..+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 68899999999972 223 3566665544443333444566666666665 2223
Q ss_pred EEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 993 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 993 l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
+|.++ ...|+|||.++...++...... ..++. +++|+++ |..|+..+.||...+-.+
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nih------------------y~~iT--Diaws~d-g~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIH------------------YSAIT--DIAWSDD-GSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeee------------------eeeec--ceeecCC-CcEEEEeccCCceEEEEE
Confidence 45554 5679999999988887776443 34454 7899988 899999999998776655
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.7e-17 Score=161.45 Aligned_cols=227 Identities=15% Similarity=0.171 Sum_probs=170.7
Q ss_pred cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC---CCeeEEEEecCCCEEEEE
Q 001310 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ---EAVPCFALSKNDAYLFSA 820 (1103)
Q Consensus 744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~s~d~~~l~~~ 820 (1103)
|+..++++.+.+.-|.+||.-.++. ...... ..|. ....+++|+|||..|..|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~l----------------------raSy~~--ydh~de~taAhsL~Fs~DGeqlfaG 176 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKL----------------------RASYRA--YDHQDEYTAAHSLQFSPDGEQLFAG 176 (406)
T ss_pred CccceeeeccccCceeeeecccccc----------------------ccchhh--hhhHHhhhhheeEEecCCCCeEeec
Confidence 6677788888887777777554432 111110 1122 234579999999999999
Q ss_pred cCCeEEEEEcC-CceeeE---Ee----cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEE
Q 001310 821 SGGVISLYIVM-TFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892 (1103)
Q Consensus 821 ~dg~i~iwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 892 (1103)
....|++||+. .|..-. ++ .+..+-+.+++|+|.+.+.+|.|+....+-||.-..+.++..+-+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 99999999994 443211 11 12356789999999888899999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC-ceE
Q 001310 893 VFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTC 969 (1103)
Q Consensus 893 ~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~-~~~ 969 (1103)
.|.+||+.|.+|+. |..|..||+.... ..+-.+.+|....+.-.-....|+|++|++| .||.|++||+++ |..
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 99999999999885 7789999998633 2333334443322223345567999999997 899999999998 665
Q ss_pred EEEeeCCCCcCeEEEEEccCCCEEEEEecC
Q 001310 970 LKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
+.. ...|+..+..+++.|-=.++||++..
T Consensus 333 ~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccc-cccccccccceecCcccceeeeccCc
Confidence 555 56689999999999997778887654
No 170
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.9e-16 Score=171.19 Aligned_cols=494 Identities=13% Similarity=0.097 Sum_probs=294.3
Q ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC----------CCceEEEEEcCCC
Q 001310 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK 465 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d----------~~~~~l~s~~~d~ 465 (1103)
...-.++.|+|.| +||.|+.. .|.+-|..+-+.++ .+.-|...|+.+.|.|- ..+++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788999876 67777654 58888887765555 67889999999999773 2346789999999
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCc--cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCC
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 542 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~ 542 (1103)
.|.+||...+..+..+..|..++..++|.+..+. .+|++.....++.+|+.++++.............|+.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876554 4778888889999999999999888877777777888888 445
Q ss_pred EEEEEecCCCCceeEEEEeCC-------CCeeEEEEecccc-------------c---CCc------eEEEEEcCCCCEE
Q 001310 543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL-------------Q---HNS------VSVVHFDTAKDQI 593 (1103)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-------------~---~~~------v~~~~~~~~~~~l 593 (1103)
.+...+. .|.+.+-+.- .|+..+.-..|.. + ... ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 5444432 3334443321 1222222222110 0 000 1224678877767
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1103)
Q Consensus 594 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~ 671 (1103)
+.......+.++|++-..++.......+. +..+.+-|++ ..|++...||.+.+|-........... ...+.
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~-----~~~l~ 318 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP-----NASLS 318 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc-----chhhc
Confidence 77777888999999999999888877554 4556666654 579999999999999766421111110 00000
Q ss_pred EecCCceeeeeccCCceEecCCCCCC-CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecC-----
Q 001310 672 VNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG----- 745 (1103)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----- 745 (1103)
..-....-++........+.+...|. ...++.--.+|.+.+|++..+......... ...-+..+.|...
T Consensus 319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~~~~~v~ 393 (1062)
T KOG1912|consen 319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNLSTKLVG 393 (1062)
T ss_pred cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccCceeehh
Confidence 00000000000000000000111122 333444456678888887743322111110 0001111111111
Q ss_pred CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCe
Q 001310 746 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 824 (1103)
Q Consensus 746 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~ 824 (1103)
...+..-+.||. .+.|. +..-.++.......... ..+...... -.++|.|. .|+
T Consensus 394 k~~l~~LS~dg~-----------h~sGs-----~~~~~~p~p~~t~~~~~-----p~~n~~~~~----~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 394 KTSLISLSDDGS-----------HSSGS-----TCVRMRPMPELTKVEND-----PGGNTPAGT----VPLVAVGTNSGT 448 (1062)
T ss_pred hccccchhhcCC-----------CCCCc-----eeeecccCcccceeecC-----CCCCcccee----eeeEEeecCCce
Confidence 111222222220 00000 00000110000000000 000000000 13566665 699
Q ss_pred EEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCceeE--EEecc-CCCCEEE
Q 001310 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVI--SKLEG-HSKRVTG 891 (1103)
Q Consensus 825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~----------~dg~v~iwd~~~~~~~--~~l~~-h~~~V~~ 891 (1103)
|.++|+.++..-+.+..|...|.++.|-. .. .|++.+ .-+.+.+-|+.+|... +.+.+ ...+|+.
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g-~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG-NS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeecc-ce-eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999999999999999999999975 33 444332 2247788899998532 22232 5678999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001310 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1103)
Q Consensus 892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 945 (1103)
+..|.-|+||+..-.|.-+.+||+++.. +++......+ -++.+.|+
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs 572 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS 572 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence 9999999999999999999999998733 2222222111 37888888
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.8e-17 Score=161.88 Aligned_cols=301 Identities=16% Similarity=0.254 Sum_probs=211.4
Q ss_pred eccCCCccEEEEEECC-----CCCEEEEEeCCCeEEEEEecCCCccccceEe--ccccccEEEEEEecCCC--ceEEEEE
Q 001310 391 LVRDPGVSVNRVVWSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI--DAHVGNVNDLAFSAPCK--QISVITC 461 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~sp-----dg~~las~~~d~~i~iwd~~~~~~~~~~~~l--~~h~~~v~~~~~s~d~~--~~~l~s~ 461 (1103)
+..+|+.+|..++|.+ +-..+|+++ ...+.+|.......++..... ..|......++|+-|.. ..++|.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3667899999999985 234455554 445899988765422322222 24777788889976543 3488999
Q ss_pred cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310 462 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1103)
Q Consensus 462 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1103)
+.-|.|+|.|+.++++...+.+|...|+.+.++|. +.++++++|.|..||+|++++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~----------------------- 167 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQT----------------------- 167 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccC-----------------------
Confidence 99999999999999999999999999999999876 335777888777776666554
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc----
Q 001310 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---- 617 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 617 (1103)
..++..+.|...|.+.|.++.|++++.++++++.|.++++|++...+....+.
T Consensus 168 -----------------------~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~ 224 (385)
T KOG1034|consen 168 -----------------------DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSIT 224 (385)
T ss_pred -----------------------CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcc
Confidence 33344444444455999999999999999999999999999998432211110
Q ss_pred --CC--------------------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeEec-------------c
Q 001310 618 --AG--------------------GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAA-------------G 661 (1103)
Q Consensus 618 --~~--------------------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~-~~~~~~~~-------------~ 661 (1103)
.. -+...|-|+.|- |+++++-+-++.|..|... -.+.+... .
T Consensus 225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred cCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 00 011223344443 6788888889999999873 22221111 1
Q ss_pred ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEE
Q 001310 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1103)
Q Consensus 662 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 741 (1103)
.....++-+.|+ | .+-++.|+.|...|.+.+||+...++..+..+.-+. ....|+..+
T Consensus 303 ~~~c~iWfirf~----------------~----d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~--~~~tVRQ~s 360 (385)
T KOG1034|consen 303 YPMCDIWFIRFA----------------F----DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK--SGSTVRQTS 360 (385)
T ss_pred cCccceEEEEEe----------------e----cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc--ccceeeeee
Confidence 112222222221 1 367889999999999999999988776555554333 567899999
Q ss_pred EecCCcEEEEeecCceEEEeec
Q 001310 742 YNNGGQAIFALASNGVHLMWRW 763 (1103)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~vw~~ 763 (1103)
|+.||..|+....|++|.-||.
T Consensus 361 fS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 361 FSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999999999888874
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=3e-19 Score=194.08 Aligned_cols=285 Identities=19% Similarity=0.286 Sum_probs=220.6
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
++.|.||...|.|+.|...|. ++++|+.|..|+||..+++.++.+ ..||++.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 456789999999999999998 689999999999999999999876 889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE---eec
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG 483 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~ 483 (1103)
+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..=.-.++. ++.
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999997665 68899999999999983 4788899999999761111111 111
Q ss_pred -CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEEEe
Q 001310 484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 484 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd 561 (1103)
...-+.++.| ..++..+++++.|+.-..|.+.-.. .+...+.-+.++.|-. +.+++- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence 1233444444 4466788999999988888554211 1111122222222322 222222 266788999
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 640 (1103)
+.+|...+.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++..
T Consensus 382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence 99999999999988 8999999999877665 5899999999999999888776633 2 346788999999999999
Q ss_pred ECCCeEEEEEcCCCCee
Q 001310 641 ANENRIKILETPESNSV 657 (1103)
Q Consensus 641 ~~dg~i~iw~~~~~~~~ 657 (1103)
.+-|.+.|.....++..
T Consensus 457 d~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCceEEeccCCCccc
Confidence 99999999887765443
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=7.2e-18 Score=171.51 Aligned_cols=254 Identities=13% Similarity=0.179 Sum_probs=186.6
Q ss_pred CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeecccccc------ceeeeeccCCCccEEEEEECCC-CCEEEEEeCCC
Q 001310 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM------LFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 418 (1103)
Q Consensus 346 g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~ 418 (1103)
|+ ++|.|+.|..|.|||+.--..+. +..-++.-.. ..+.....+|+..|-+++|... ...||+||.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 55 79999999999999985322211 0111110000 0122235689999999999985 56789999999
Q ss_pred eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCC
Q 001310 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498 (1103)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 498 (1103)
+|++||+.+|++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+........-...+.|..++|.+...
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 99999999998766 67789999999999998776 899999999999999885433322223567788999987643
Q ss_pred ccEEEEEECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc
Q 001310 499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1103)
Q Consensus 499 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1103)
..++++..||+|+-+|++.. ++..++..|..+|.++++++....+++.+ ..++.+.+|++..-... ....|...
T Consensus 343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~ 417 (463)
T KOG0270|consen 343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK 417 (463)
T ss_pred -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence 57888899999999999987 67889999999999999999776655543 23778999998654331 11222212
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeE
Q 001310 578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL 613 (1103)
Q Consensus 578 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~ 613 (1103)
-+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2457788888886655 45778888999999876544
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=4.4e-17 Score=162.93 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=184.9
Q ss_pred eccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
...||+++|-.++|+| +...||+||.|.+|.||.+-.+.. ......|.||...|.-++|+|.-.+ +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 778899999999999999876543 2345578999999999999998877 899999999
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc-cEEEEEEccCCCEE
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l 544 (1103)
+|.+||+.+|+.+.++. |.+.|++++|+ .||.++++.+.|..|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999988 99999999995 4788999999999999999999988877766554 456677888998 6
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee-EEEEcCCCCC
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL 622 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~ 622 (1103)
++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.+.++...++. |-.|+.||-|.+....+ +.-+......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6666777778899999977543322222211 1345666678888887766 55899999999987653 2333222223
Q ss_pred CCCceEEEecC
Q 001310 623 PENPRICFNKN 633 (1103)
Q Consensus 623 ~~v~~v~~s~~ 633 (1103)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34466777664
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.4e-17 Score=166.50 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=177.9
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-C
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g 408 (1103)
..||+++|..++|+|-....+|+||.|.+|.||++..+.......- ....|.||...|.-++|+|. .
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte------------pvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE------------PVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc------------ceEEEeecceeEEEEeecccch
Confidence 4699999999999998877899999999999999987665543221 12238899999999999995 5
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
+.|++++.|.+|.+||+.+|+.+. ++. |...|.++.|+.||. ++++.+.|+.|||||..+++.+..-.+|.+.-
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred hhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 678899999999999999998655 454 999999999999999 89999999999999999999998887887543
Q ss_pred E-EEEeeecCCccEEEEEE---CCCeEEEEEcCCCCeeEEec--CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 489 Y-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 489 ~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
. .+.| -.++.++.+|. .+..+-+||..+.+....+. .....|.---+.+|.+.++.++ .||+.|+.|.+
T Consensus 219 ~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyEi 293 (472)
T KOG0303|consen 219 PARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFEI 293 (472)
T ss_pred cceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEEe
Confidence 2 2223 33555444442 46779999987765543222 2334666677899999999887 46888999998
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1103)
........+-..-....+-..+.|-|.
T Consensus 294 t~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccccCCcccccccccc
Confidence 766532222211111235556666664
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.6e-16 Score=164.79 Aligned_cols=229 Identities=16% Similarity=0.151 Sum_probs=164.9
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEE-E-----ecCCCceEEEEEcCCCce
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-F-----SAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~-~-----s~d~~~~~l~s~~~d~~i 467 (1103)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.+ .... .+. ..-|.... . ...+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hCC--cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 367778899999888777776555544555554432 2111 111 11111100 0 111111268888999999
Q ss_pred EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
.|-+ ..++....+..|.+.+.+-.|++ +|.-|+++++||.|++|.- ++-.+.++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 88888889999999999998854 7788999999999999973 333344455566789999999999888887
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
.. +.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||.. |..+..-..| ..+|++
T Consensus 164 ~g-----~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~--ey~ITS 232 (737)
T KOG1524|consen 164 QG-----GHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE--EYAITS 232 (737)
T ss_pred cC-----CeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh--ccceee
Confidence 53 347777777777777788887 999999999999999999999999999975 4444444444 457999
Q ss_pred EEEecCCCEEEEEEC
Q 001310 628 ICFNKNGTLLAVIAN 642 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~ 642 (1103)
++|+|+ +.+++++.
T Consensus 233 va~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSY 246 (737)
T ss_pred eeeccc-cceeeeee
Confidence 999999 66676665
No 177
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=155.30 Aligned_cols=337 Identities=12% Similarity=0.167 Sum_probs=226.2
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeE
Q 001310 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1103)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~ 613 (1103)
.+|||+|+++++++. -++.|-|..+-+..+.+... +.|..+.|..|.-++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 589999999999974 35888888877766666553 36778889999888887 567889999999988877
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310 614 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1103)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1103)
..+... ..++..++|||||+.+...+ -+-.|.+|.+.+.+....-.
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------- 131 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------- 131 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence 777643 45689999999997665554 47889999988763321110
Q ss_pred CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1103)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 772 (1103)
....+..++|.|||++.+..+.....-.+.+.
T Consensus 132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 11234667888888876665543111111000
Q ss_pred ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1103)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1103)
..+-|.+- ..+++ ..-..+.+.++|||..||+-. +-.|..|.. .-.+..+
T Consensus 164 ------~c~~W~ll-----~~f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v 216 (447)
T KOG4497|consen 164 ------SCKAWILL-----KEFKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV 216 (447)
T ss_pred ------hhHHHHHH-----HhcCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence 01112111 11111 334556788888888887654 233333322 2356778
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------------------------------------------
Q 001310 850 AFNPHDNNVIAIGMDDSTILIYNARSSEV--------------------------------------------------- 878 (1103)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------------------------------------------- 878 (1103)
+|+| .+++|++|+.|+.++|.+--+.+.
T Consensus 217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 8888 888888888888888755433221
Q ss_pred ---------EEEec------cCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceE
Q 001310 879 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1103)
Q Consensus 879 ---------~~~l~------~h~~~V~~l~~s~dg~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1103)
+..++ ...-.+.-++||+|..+++|-.. -..+-+||+..-+ ....+.... +|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----pira 366 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIRA 366 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----ceeE
Confidence 11111 01124667999999999998643 3569999998744 222222222 6999
Q ss_pred EEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310 942 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus 942 l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
..|.|.-..|++. ...++++|......++.. +..+-.|..+.|.-+|..++-.+.|-
T Consensus 367 f~WdP~~prL~vctg~srLY~W~psg~~~V~v--P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEEcCCCceEEec--CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 9999999888885 666899999887666664 33457899999999999999998885
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=162.52 Aligned_cols=303 Identities=12% Similarity=0.104 Sum_probs=215.1
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
+.+.+.+|.+-|.++.||.+++ +||+|+.|..+++|+++.-...++ .+++.. .-..|...|.|++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEc
Confidence 4456789999999999999998 799999999999999864322221 011111 133467899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-e--eEEee
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFE 482 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~ 482 (1103)
...++|.+|..+++|..-|+++.+.+... .-....+.|..+..+|-.. .+++.+.++.|.+||..... . +..+.
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence 99999999999999999999997655421 1112334899999999877 89999999999999987654 2 22333
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-------ecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1103)
.......++.|+|.. ..+|++.+..+-+-+||.+....... +......-.++.|+|.|+.+.+.-.. .
T Consensus 192 N~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~----~ 266 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG----K 266 (609)
T ss_pred CCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc----C
Confidence 344566777887753 36888999999999999876543221 11112234678899999999876532 2
Q ss_pred eEEEEeCCCCeeEEEEecccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------------
Q 001310 556 FLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--------------------- 610 (1103)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------- 610 (1103)
.-.+||+.+.++...-..|.. ....+.+++|..+- .+++|+.+-.|++|.+...
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 245677776443222222221 12357778887664 4899999999999987531
Q ss_pred --eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 611 --QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 611 --~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
..+..+.+| ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus 346 i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 IEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122344444 3457899999999999999999999999754
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.9e-18 Score=193.89 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=196.4
Q ss_pred CceEEEecCCCce---EEEEEcCCCcEEEEECCCC---CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 336 ~V~~v~~spdg~~---llasgs~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
.-..++|++.|.. ++|.|..||.|.+||...- .... .......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCC
Confidence 6678899888775 6899999999999998652 1111 0111567999999999999655
Q ss_pred -EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC--
Q 001310 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1103)
Q Consensus 410 -~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-- 486 (1103)
+||+|++||.|.|||+..-+.-.... -..-.+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+.+
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998754222110 1124568999999987666 899999999999999999988887776655
Q ss_pred ceEEEEeeecCCccEEEEEECC-C--eEEEEEcCCCCe-eEEecCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEEe
Q 001310 487 PVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd 561 (1103)
.+..++|||+... .+++++.| + .|.+||++.... ..++..|...|.++.|++.+ .+|++++. |+.|.+|+
T Consensus 208 ~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN 282 (1049)
T KOG0307|consen 208 HCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWN 282 (1049)
T ss_pred ceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEec
Confidence 4678899987554 45555544 3 499999987554 45678999999999999976 77777765 66799999
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 611 (1103)
.++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+....
T Consensus 283 ~~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 283 PNTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999998755 8999999999887 66678999999999987654
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1e-15 Score=143.06 Aligned_cols=286 Identities=12% Similarity=0.139 Sum_probs=195.9
Q ss_pred cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1103)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 815 (1103)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.+.. .....+. +..+|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~~---------~gk~~iv----~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAEP---------PGKLKIV----PEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccCC---------CCCccee----eccccCCCeeeeeee--hh
Confidence 455667899999999999999999998765321 11110 0111111 123699999999998 56
Q ss_pred EEEEEcCCeEEEEEcCCcee------eEEec-------CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 816 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 816 ~l~~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
+|++++||.|+-|....... +.+.. ..-..|+++-..|..+.+ +.++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEEE
Confidence 88899999999998764322 11111 123478999999955544 44558999999999999999999
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc----CCCCceEEEEcCCCCEEEEEeCCe
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH 958 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~l~~~~d~~ 958 (1103)
+||++.|.+++--.....+.||++||++++||.++++.... +...+.... ...+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 99999999999855556788999999999999999775442 222111110 11233 44555677999998889
Q ss_pred EEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeecc
Q 001310 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCS 1038 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1103)
+.+|.+++.++...+.- ..++..+.|-.| .+++++..+.|.-|.+. |.+...+...
T Consensus 229 lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~------------------- 284 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE------------------- 284 (325)
T ss_pred eeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC-------------------
Confidence 99999999888876432 567888888654 46667778889999875 4444333311
Q ss_pred CCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310 1039 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus 1039 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
+...++.+..-+|- .+|-.++..+.++|+.
T Consensus 285 s~~c~s~s~~~~p~--k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 285 STACYSASWQTSPI--KFISIAGFSNKLHILK 314 (325)
T ss_pred ccceeeecccCCce--EEEEecccceeeeeee
Confidence 11133333444442 5677777788888774
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.7e-18 Score=176.18 Aligned_cols=262 Identities=15% Similarity=0.198 Sum_probs=197.0
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEec-----CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
.+..|...|++++|.|-...|++++.||++.+|++. ....+.++.++++|.++|.|++++++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 467799999999999999999999999999999992 2334677889999999999999999999 799999999
Q ss_pred ceEEEeCCCC----------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc--cEE
Q 001310 466 TIKVWDAVTG----------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 533 (1103)
Q Consensus 466 ~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~ 533 (1103)
+|+.|++... .....+.||.+.|+.++++..++ .|++++.||+++.|+...... .++..... --.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999965421 22356789999999999987664 699999999999998776555 22322222 223
Q ss_pred EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 34443322 11222111 12223444444444444432221 12457788899999999999999999999999
Q ss_pred CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccc
Q 001310 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1103)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1103)
++..+.....| ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999888766 456899999999999999999999999999877666554433
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.8e-17 Score=154.72 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=199.1
Q ss_pred EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1103)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 648 (1103)
..+++|. ..++++.|..++ +|++|..-|.|.+|++.+......+..++. ..|..+.--|+ ..+.+-+.|+.+.+
T Consensus 8 fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 8 FVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence 3455555 889999998775 599999999999999999988888875543 45777777776 57888899999999
Q ss_pred EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1103)
Q Consensus 649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1103)
|++.....+.. |+-.++.+-|.+....... .+....++.-+. +.-.+-..+.+...+......
T Consensus 82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~~~-------------k~~eqll~yp~r-gsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 82 WTIAYSAFISI---HSIVVNSLGFCRFSLVKKP-------------KNSEQLLEYPSR-GSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEccCcceEEE---eeeeccccccccceeccCC-------------CcchhheecCCc-ccchhhhhccCccceeEccCc
Confidence 99987544322 2233333344332211100 011111111111 110011111112222222222
Q ss_pred cCccccccEEEEEEec-CCc--EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310 729 PSKVKANKISRLTYNN-GGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1103)
Q Consensus 729 ~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 805 (1103)
+.....+.+.+..+.. ++. .+++|-.+|.+.+||+........- ...|... ..-..|..+|
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~-------~~~~kv~---------~~~ash~qpv 208 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL-------PQSSKVE---------SPNASHKQPV 208 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc-------ccccccc---------cchhhccCcc
Confidence 2234455666655322 232 3456667899999999875321110 1111111 1112488999
Q ss_pred eEEEEecCCCEEEEEc-CCeEEEEEcCC--cee--eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310 806 PCFALSKNDAYLFSAS-GGVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1103)
.++.+.+.-..=++++ +..+..|.++. +.+ ..++...+..|..+.+-| |++++|+++.||.|+||+.++...+.
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchh
Confidence 9999987655555555 56788888763 222 222333456788899999 99999999999999999999999999
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001310 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 915 (1103)
Q Consensus 881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~ 915 (1103)
.++-|++.|.+++|+||..++|.+|.|++|.+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999986
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.6e-18 Score=172.99 Aligned_cols=302 Identities=16% Similarity=0.227 Sum_probs=234.9
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
.+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.++.....+ ..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 34567889999999999999998 7999999999999999998876542 5689888988889
Q ss_pred CC--CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-
Q 001310 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1103)
Q Consensus 405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 481 (1103)
-| +.+.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+... .|.+++.|+.+.-.|+.++.+...+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 5678999999999999887655544444467789999999999999887 7999999999999999887665433
Q ss_pred --ecCCC---ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee------EEe------cCCCccEEEEEEccCCCEE
Q 001310 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l 544 (1103)
..+.. ...+++.+|. +...+++++.|..+++||.+.-... ..+ ....-.|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 4567777765 3458999999999999997643322 111 1223368999999777666
Q ss_pred EEEecCCCCceeEEEEeCCC--C----------eeE-EEEecccccCCceEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001310 545 FSCGTSKEGESFLVEWNESE--G----------AIK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~ 610 (1103)
.+... +-.|+++.... | ..+ +.++||... ..|..+- |.|..+++++|++-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 66554 34488885432 2 222 337888722 3466664 5688899999999999999999999
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
+.+..+.+..+ .|+|+.-+|--..||+.+-|..|+||.-.+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999888766 5899999999999999999999999987544
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=5.2e-17 Score=153.80 Aligned_cols=293 Identities=17% Similarity=0.193 Sum_probs=200.3
Q ss_pred ccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeecc-CCCccEEE
Q 001310 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1103)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~ 401 (1103)
|......|++|.+.|+++.|-.+++ |.+|...|.|++|++.+...... +. .|+..|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3445577889999999999999986 78899999999999998765543 33 37788999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC-----CCce--EEEEEcCCC-ceEEEeCC
Q 001310 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV 473 (1103)
Q Consensus 402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~ 473 (1103)
+.--|+ ..|.+-+.|..+.+|++..+..+ .-|.-.++++-|.+- ++.. .++.-+... .+.+-|..
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 999887 56777789999999999876432 245556666666542 2110 111111100 01222221
Q ss_pred CCceeEEe----ecCCCceEEEEeeecCC-ccEEEEEECCCeEEEEEcCCCCeeE----------EecCCCccEEEEEEc
Q 001310 474 TGSRTYSF----EGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTRMAYS 538 (1103)
Q Consensus 474 ~~~~~~~~----~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~s 538 (1103)
....++.. .+..+.+.+..+..... .-++++|.++|.+.+||+.++.... ....+..++.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11112111 12234555555322222 2356788899999999999874433 344567789999888
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCC--Cee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310 539 ANGRRLFSCGTSKEGESFLVEWNESE--GAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1103)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 615 (1103)
+.-..=++++. +..+..|+++. +.+ ++...... +..+..+..-||++.+++++.|+.||||+.++.+++..
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 75554455443 33466776653 222 11111111 35688889999999999999999999999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
+..|. ..|++++|+|+.+++|.++.|+.|.+|++
T Consensus 289 LkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99885 56999999999999999999999999986
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-15 Score=140.77 Aligned_cols=278 Identities=16% Similarity=0.209 Sum_probs=193.5
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCC---CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
.|.+-++||.++ +|+.|..+|+|.+..+.+- +... ....+.....+|.++|+.++|. .++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~------------~gk~~iv~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEP------------PGKLKIVPEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCC------------CCCcceeeccccCCCeeeeeee--hhhee
Confidence 566778999998 6999999999999998542 1110 0111122257899999999998 55677
Q ss_pred EEeCCCeEEEEEecCCCc---cccceE--ecccc-----ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 413 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
+|+ ||.|+=|.+..... .++... ..-|. -.|+++...|... -++.++.|+.++.||+++|+..++++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 764 59999998865332 111111 11222 2588999998777 46666689999999999999999999
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc----------cEEEEEEccCCCEEEEEecCCC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
||++.|.++.-.. ....+++|++||++|+||.++.+....+....+ .|.++ .-+..+|++++.
T Consensus 154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG--- 226 (325)
T KOG0649|consen 154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG--- 226 (325)
T ss_pred CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC---
Confidence 9999999998632 334799999999999999999988776543322 34444 456678888764
Q ss_pred CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
..+.+|++++.+....+.-. ..+..+.|.. +.+++++..+.|.-|.+. |......+... ....+..++.
T Consensus 227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s--~~c~s~s~~~ 295 (325)
T KOG0649|consen 227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVES--TACYSASWQT 295 (325)
T ss_pred --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCc--cceeeecccC
Confidence 34999999999998888764 3778888854 578888888889999874 44444444332 2344444443
Q ss_pred C-CCEEEEEECCCeEEEE
Q 001310 633 N-GTLLAVIANENRIKIL 649 (1103)
Q Consensus 633 ~-g~~l~~~~~dg~i~iw 649 (1103)
. -+++-.++..+.+.++
T Consensus 296 ~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 296 SPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEEecccceeeeee
Confidence 2 2345555556666654
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.4e-17 Score=171.77 Aligned_cols=271 Identities=14% Similarity=0.190 Sum_probs=192.8
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
...+|..|.+.|.+++|.|-.. .|++++.||++.+|+++....-... ...+-..+.+|.++|-|++++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEec
Confidence 3448889999999999999987 7999999999999999431111100 011122378999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCC-------ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
+++..+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++++.||+++.|+.....+
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-
Confidence 999999999999999999664211 1122235779999999999999887 699999999999999766555
Q ss_pred EEeecCC--CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-------CccEEEEEEccCCCEEEEEec
Q 001310 479 YSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 479 ~~~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
.++.... +...++.+..+.- ...++...-+.--+.++........+... ...+.-+...|.+...+.+..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 3443222 2233444321110 11122222222223333333333322211 124667788888888888765
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
+..|+++|..++..+.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 ----d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ----DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ----CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 6679999999999999988887 89999999999999999999999999999887776655544
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=2.5e-15 Score=156.03 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=185.9
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.|+.-|.|+.|+.+.. ++.+++.+..+.-||+.+.+.. ...++ ..|-. -.-|-.+ .+..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~dDh~~~~~~~~~~~s~~-~~~~p--------~df~p--t~~h~~~-rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSDDHQIFKWSDVSRDSVE-VAKLP--------DDFVP--TDMHLGG-RSSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEeccCceEEEeecccchhhh-hhhCC--------cccCC--ccccccc-cccCCCCCcceE
Confidence 5666788999999987 5665554444444444433221 10100 00000 0001000 000000123578
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
+.++.||.+.|-+-.. +. ......|.+.|.+-.|+|||. -|++++.||.|++|. ++|-...++.....+|+|+
T Consensus 79 ~i~s~DGkf~il~k~~-rV---E~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RV---ERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccc-hh---hhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 8888999888877543 22 225678999999999999999 799999999999999 7887766776778899999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
+|.|+.+ ..+++.+ +.+.|=-+........++.|.+-|.++.|++..+.+++++. |....+||.. |..+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence 9977654 3444433 45566666777778889999999999999999999999975 7779999965 5554444
Q ss_pred ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 649 (1103)
..|. .+|++++|+|+ +.++.++. ++++ +... ....|..++||+||..+++|+..|.+.+=
T Consensus 224 ~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 224 AAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred Chhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence 5555 89999999999 55555553 3444 2211 13458899999999999999999987653
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-16 Score=156.54 Aligned_cols=295 Identities=12% Similarity=0.086 Sum_probs=210.7
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCC---ccccceEe-ccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~l-~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
+.+|.+.|.++.||.++++||+|+.|..+++|++..-- ..+++... ..|...|.|++|...++ .+++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 67899999999999999999999999999999986421 11222122 24668999999998887 89999999999
Q ss_pred EEEeCCCCceeEEeec--CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCCC
Q 001310 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 542 (1103)
Q Consensus 468 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1103)
...|+++.+.+..+.. ..+.|+.+..+|. ...+++.+.+|.|.+||.+.... .......+.....+.|+|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999988752 2358999999876 36899999999999999987652 233344555788899999887
Q ss_pred EEEEEecCCCCceeEEEEeCCCCee-EEE---EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 543 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
.|+.......+ +.+||.+.... +.. +.+.......-.++.|+|+|+.+++.-....=.+||+.+..+......
T Consensus 208 ~Li~~~~~~~G---~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETGG---PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccCC---CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 77665543333 78899875432 111 122221112335678999999999876666666788877544322222
Q ss_pred CC-----CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC-----------------------eeEeccccccceeee
Q 001310 619 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPESN-----------------------SVDAAGVLSDNLRKL 670 (1103)
Q Consensus 619 ~~-----~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~-----------------------~~~~~~~~~~~i~~~ 670 (1103)
|. ....+.+++|-.|- .+++|+++=.|++|.+.... .+..+++|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 12346678887654 49999999999999987321 234455666666655
Q ss_pred EEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
.|+ |...++++.+..+.+++|...
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eec----------------------CCcceEeccchhhheeccccc
Confidence 555 667778888888999999743
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.3e-17 Score=158.04 Aligned_cols=292 Identities=12% Similarity=0.167 Sum_probs=204.2
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--ecCCC-ccEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPG-LGCT 533 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~-~~i~ 533 (1103)
.++++-..|+|++||..+++.+..++++...+..+.|........+.+++.||+|++||++....... +..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 67888889999999999999999999999999999997655667899999999999999998765443 33333 4677
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCee-EEEEe-cccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001310 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 610 (1103)
+++....++.++++..-...+..+.+||.+..+. ++.+. .|. ..|+++.|+|.. +.|++||.||-|.+||+...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7777778888888876666678899999998766 55544 344 899999999975 67888999999999999754
Q ss_pred ee----EEEEcCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccC
Q 001310 611 QL----LTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1103)
Q Consensus 611 ~~----~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 685 (1103)
.. +.++. ....|.++.|..++ +.+.+-+..++..+|+++.+.....+....-... ..- .-..
T Consensus 199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~--d~r--------~~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSAD--DLR--------KEDN 265 (376)
T ss_pred cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhh--hHH--------hhhh
Confidence 22 22332 23458889999876 4588888899999999998865443322110000 000 0000
Q ss_pred CceEecCCCCCCCccceeecc-ccccccccccccCCc-cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310 686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1103)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~ 763 (1103)
....++.....++...+.++. .+...++-+....+. ..........+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011222222234444444443 566666655432221 222233344557788899999999999999999999999985
Q ss_pred C
Q 001310 764 P 764 (1103)
Q Consensus 764 ~ 764 (1103)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1e-15 Score=147.06 Aligned_cols=290 Identities=18% Similarity=0.274 Sum_probs=206.7
Q ss_pred eEecccCCcCceEEEec--CCCceEEEEEcC----CCcEEEEEC--CCCCeeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310 327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~s--pdg~~llasgs~----d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1103)
+..+..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+..-+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 45555654 78889998 666667899985 355655544 4455443322 248899
Q ss_pred EEEEEECCCCC-----EEEEEeCCCeEEEEEecCCC-ccccceEe-----ccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGS-DARQQLEI-----DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 399 V~~~~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~l-----~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
++.+-|.||.+ +||+++ | .+++|.+...+ .+.....+ ..+..++++..|+.-..+ ++.+.+-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999873 566653 3 59999997422 12211122 245678999999876655 89999999999
Q ss_pred EEEeCCCCce---eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-EEecCC--CccEEEEEEcc-C
Q 001310 468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAP--GLGCTRMAYSA-N 540 (1103)
Q Consensus 468 ~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~--~~~i~~~~~s~-d 540 (1103)
.|||+++|.. ...+-.|...|..++|.. +....+++.+.||.+|++|++..+-- ..+... ..+...++|++ |
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999743 456778999999999975 34578999999999999999876532 233332 34778888887 4
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee------
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------ 612 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------ 612 (1103)
-+++++...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. .++.++++|..+.+||+...-.
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 5566665543 34488999985 45678888888 999999999974 6788899999999999975322
Q ss_pred EEEEcCCCCCCCCceEEEec-CCCEEEEEECCCeEEEE
Q 001310 613 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKIL 649 (1103)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iw 649 (1103)
+.... ....|+.+.|++ .+.+++++.. +.+.+.
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 11122 234689999996 5677877765 345443
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=8.8e-15 Score=161.52 Aligned_cols=198 Identities=12% Similarity=0.140 Sum_probs=126.4
Q ss_pred eEEEEecCCCEEEEEc--CCeEEEEEcCC-c---eeeEEecCCCCCeeEEEEcCCCCCEEE-EEeCCCeEEEEEcCCcee
Q 001310 806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 878 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~ 878 (1103)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3456666666666554 46666666653 2 1122222 223466788999 777665 555679999999986332
Q ss_pred EE-------EeccCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310 879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 879 ~~-------~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 948 (1103)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988776 89999999984 3332222222211111111234569999999
Q ss_pred CEEEEE--eCCeEEEEECCCce----EEEEeeCCCCcCeEEEEEccCCCEEEEEec-CCcEEEEeCC
Q 001310 949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1103)
Q Consensus 949 ~~l~~~--~d~~v~iwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-dg~v~vWd~~ 1008 (1103)
++++++ .++.|.+|+++... .+..... ......+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999996 46789999986432 2222222 124557899999999998875 8999999874
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=4.8e-15 Score=147.90 Aligned_cols=241 Identities=11% Similarity=0.165 Sum_probs=184.2
Q ss_pred CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCceeE
Q 001310 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVI 879 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~~~ 879 (1103)
...+..+.|..|...|..|+....++|.................|..+-|+. .++|..+.+ +.++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999877778888876555333334455677788876 366666554 46999999988877
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-E--eC
Q 001310 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 956 (1103)
Q Consensus 880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~--~d 956 (1103)
..+. ....|.++.+. .++|+++=.+. |+|||+++-+ .+.+.....+....+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 45678888885 45666666555 9999999854 34444333222235677777778889998 3 66
Q ss_pred CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCc-EEEEeCCCceeEEeeccccccCCCCCCCceeeEe
Q 001310 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035 (1103)
Q Consensus 957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1103)
|.|.+||+.+.+.+.. ...|.+++.+++|++||.+|||+|+.|+ |||+.+.+|+.+..|++..+ +
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~------------ 218 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P------------ 218 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e------------
Confidence 8999999999999887 5589999999999999999999999988 89999999999999984332 2
Q ss_pred eccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310 1036 YCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus 1036 ~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
+.-.+++|+|+ +++|++.+..++||+|++....
T Consensus 219 ------~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 219 ------VSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ------eEEEEEEECCC-CCeEEEecCCCeEEEEEecccc
Confidence 33457899999 8999999999999999985433
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=180.42 Aligned_cols=288 Identities=14% Similarity=0.205 Sum_probs=226.6
Q ss_pred eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 646 (1103)
.++.+.+|. +.|.|+.|...|.++++|++|..++||.++++.++....+|. ..++.++.+.+..++++++.|..|
T Consensus 182 ~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--GDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc--cccchhccchhhhhhhhcccCceE
Confidence 345566766 899999999999999999999999999999999999998775 468999999999999999999999
Q ss_pred EEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee
Q 001310 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1103)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 726 (1103)
++|.+..+.++..+++|.+.|++++|+|. .+.+.||++++||...... ...-
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~~~--~y~p 308 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLEPR--IYVP 308 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEecccccccc--ccCC
Confidence 99999999999999999999999999973 2567889999999762110 0000
Q ss_pred eccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCee
Q 001310 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1103)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 806 (1103)
.-+.......+-++.|...+..+++++.++.-..|.++... | +...+.
T Consensus 309 rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~li 356 (1113)
T KOG0644|consen 309 RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNLLI 356 (1113)
T ss_pred CCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccceE
Confidence 00111234567788888899999999999888777654211 1 222222
Q ss_pred EEEEecCC-CEEEEE-cCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310 807 CFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1103)
Q Consensus 807 ~l~~s~d~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1103)
-+..+.|- .+.+++ .+-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|..++...-
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence 22233232 233333 3677999999999999999999999999999998888888999999999999999987766543
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1103)
Q Consensus 885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~ 919 (1103)
-.+.+..-.||+||..++....-|.++|.....++
T Consensus 437 gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 437 GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 34567778999999999988888999998776654
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2e-14 Score=143.57 Aligned_cols=242 Identities=11% Similarity=0.144 Sum_probs=186.1
Q ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
...+..+.|..|...|..|+.|| -++|+.+.-+... ........|.-+-|+..= +.+++...-+.+++.+...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence 34677778999999999999999 7888887644311 122223346666676532 13344433345999999888
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC---CccEEEEEEccCCCEEEEEecCCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
..+..+. ...+|.++.++ .+.|+.+-.+. |.|||+.+.+...++... ...+.++++++.+.+++.-+...
T Consensus 79 ~~ICe~~-fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t- 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT- 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence 8887775 55678888874 34666665554 999999999888766543 34566677777777998765422
Q ss_pred CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
.|.|++||..+-+.+..+..|. +.+.+++|+++|..++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 5569999999999999999888 99999999999999999999997 689999999999999866555678899999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC
Q 001310 632 KNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
|++++|++.+..++|++|.++..
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998754
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=5.7e-16 Score=148.58 Aligned_cols=261 Identities=17% Similarity=0.211 Sum_probs=186.4
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCC-------CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1103)
.+|..|.++|+.++-+|-.+++|++...+ ..+.||.+........ ...| ..-..+-..+-+.|.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tl-------E~v~~Ldteavg~i~ 127 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTL-------ECVASLDTEAVGKIN 127 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchh-------hHhhcCCHHHhCcee
Confidence 45678899999999999998899987653 2467888754322110 0000 000111224567999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccce---EeccccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCC
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
|+.|.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence 999999999999885 7779999999876532111 1123566788899999 666 455554 889999999998
Q ss_pred ceeEEe-ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 476 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ....+..|.+.+.++.|+|.-..|+..+.+
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--- 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS--- 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence 887776 4688999999998764 4689999999999999998765 456888999999999999976655544321
Q ss_pred ceeEEEEeCCCCe-----------------------------eEEEEecccccCCceEEEEEcCCCCEEE-EEeCCCcEE
Q 001310 554 ESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIK 603 (1103)
Q Consensus 554 ~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~ 603 (1103)
+..|.+|...+-. .+.++..|. ..|.+++|+.-..+++ +-+.||.+.
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence 5557777543211 122344444 8999999998777765 578999988
Q ss_pred EEECC
Q 001310 604 IWDMN 608 (1103)
Q Consensus 604 iwd~~ 608 (1103)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 76654
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.5e-16 Score=161.91 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=163.0
Q ss_pred eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEEEeeecCCccEEEEEECCCeEEE
Q 001310 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513 (1103)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 513 (1103)
.++.||++.|+|++|+.||. +|++|++|-.+.|||....+.++.+ .+|.+.|.++.|.|..+...+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888777 68999999999999999999999999999999
Q ss_pred EEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC-CE
Q 001310 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ 592 (1103)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 592 (1103)
+|++..+... .+ + ...+..+.+..|. ..|..++-.|++ +.
T Consensus 122 fdl~~~~~~~-------------------------~d---~--------~~~~~~~~~~cht---~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 122 FDLDSSKEGG-------------------------MD---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHT 162 (758)
T ss_pred Eecccccccc-------------------------cc---c--------Cccchhhhhhhhh---hhhhheecCCCCCce
Confidence 9987532210 00 0 0011222333444 677788888888 67
Q ss_pred EEEEeCCCcEEEEECCCCeeE--------EEEcCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC-CeeEec--
Q 001310 593 ILAAGDDHVIKIWDMNKVQLL--------TTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAA-- 660 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iw~~~~~-~~~~~~-- 660 (1103)
+.++++||+|+-+|++....- .........-...++..+| +..+|++|+.|--.++||.... +....-
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 888999999999999863211 0011111223456889998 4668999999999999994321 111100
Q ss_pred --cccccceeeeE-EecCCceeeeeccC------CceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310 661 --GVLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1103)
Q Consensus 661 --~~~~~~i~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1103)
........|+. |+|......-+... ..+.| +|+|.-++..-....|.++++...+......
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 01111122222 22222211111111 12344 6777777766666678888887655443333
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.5e-15 Score=145.79 Aligned_cols=181 Identities=18% Similarity=0.245 Sum_probs=128.9
Q ss_pred eEEEEec--CCCEEEEEcCCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEE
Q 001310 806 PCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISK 881 (1103)
Q Consensus 806 ~~l~~s~--d~~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~ 881 (1103)
++-+|+| ||..+++.+|+++..||+.+.++...+. +|...|..+.|.|+...+||+++.||.|+|||.+. ..++..
T Consensus 174 tsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred cccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 3445555 7899999999999999999887776665 57788999999997778999999999999999986 457899
Q ss_pred eccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeE
Q 001310 882 LEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1103)
Q Consensus 882 l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v 959 (1103)
+.+|+..|.++.|.|. .++++|+|.|..|.+|...+-.-.. .+.|-.|..---. ....++
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEERV 315 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHHhc
Confidence 9999999999999985 4788899999999999876522111 1111111000000 000011
Q ss_pred EEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEecCCcEEEEeCC
Q 001310 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v~vWd~~ 1008 (1103)
+ -+.+|. +.+ +..|...|.+++||.-.- .+|+-+.||.+.|=.+.
T Consensus 316 k--pL~dg~-l~t-ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 K--PLQDGQ-LET-YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred c--cccccc-ccc-ccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1 111122 122 567899999999987554 46778899998886554
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.6e-16 Score=153.25 Aligned_cols=275 Identities=14% Similarity=0.157 Sum_probs=192.1
Q ss_pred EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CCCEEEEEeCCCeEEEEEec
Q 001310 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1103)
Q Consensus 349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~las~~~d~~i~iwd~~ 426 (1103)
.+|++-..|.|++||..+|+.+.. +++|...+..+.|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 577787889999999999988765 667888888999987 46788999999999999999
Q ss_pred CCCccccceEecccc-ccEEEEEEecCCCceEEEEEc----CCCceEEEeCCCCce-eEEe-ecCCCceEEEEeeecCCc
Q 001310 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1103)
Q Consensus 427 ~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 499 (1103)
+......+ ...+|. .+..+++..-.++ ++++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87654433 345665 4566666655555 566664 356799999998776 5444 679999999999987 45
Q ss_pred cEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310 500 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1103)
.+|++||.||-|.++|+..... ......+...|.++.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999876532 22334456679999999988 23444433 3448999999887655444331
Q ss_pred cc----------CCceEEEEEcCCCCEEEE-EeCCCcEEEEECC---CCe---eEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 576 LQ----------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 576 ~~----------~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
.. ..-|.+. ...+....+. |+.-+...++-+. ++. .+..+.++ +...|.++.|...+.++.
T Consensus 255 ~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLY 332 (376)
T ss_pred chhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceee
Confidence 00 0112221 1123344444 4435666666443 333 23333332 334578888988899999
Q ss_pred EEECCCeEEEEEcC
Q 001310 639 VIANENRIKILETP 652 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~ 652 (1103)
+|+.||.+.+|..+
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999864
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=3.2e-14 Score=157.01 Aligned_cols=275 Identities=14% Similarity=0.204 Sum_probs=177.6
Q ss_pred eEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-CCCeEEEEEe
Q 001310 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1103)
Q Consensus 348 ~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~iwd~ 425 (1103)
++.++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557789999999974 43221111 1 1345677899999999987764 4778999999
Q ss_pred cCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCCceEEEeCCC-Cc---eeEEeecCCCceEEEEeeecCCcc
Q 001310 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1103)
Q Consensus 426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1103)
.....+...... ........++|+|+++ ++++++ .++.|.+|++++ +. .+..+.+ ......+++++ +++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCC
Confidence 732222211111 1233567899999999 455444 588999999874 32 2333322 23355566744 666
Q ss_pred EEE-EEECCCeEEEEEcCCCCeeE-----Ee-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--eEE
Q 001310 501 FIF-SISVDGKIKAWLYDSLGARV-----DY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1103)
Q Consensus 501 ~l~-s~~~dg~i~iwd~~~~~~~~-----~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1103)
+++ +...++.|.+||+++..... .. ...+.....++|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 664 55567999999998643221 01 112345678999999999988763 356799999873 32 333
Q ss_pred EEecccc---cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
.+..... .......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332110 112234688999999999875 47899999986432 22222221 2356899999999999887
Q ss_pred C-CCeEEEEEcC
Q 001310 642 N-ENRIKILETP 652 (1103)
Q Consensus 642 ~-dg~i~iw~~~ 652 (1103)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.9e-16 Score=159.71 Aligned_cols=198 Identities=17% Similarity=0.199 Sum_probs=162.2
Q ss_pred eEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1103)
.+++|+.+|..+++++ ||++|+|++.+...+.....|...|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999988888888888999999999999 99999999999 899999999977766552
Q ss_pred --CCCCEEEEEEccCC-----CEEEEEeCCCeEEEEEcCCCceeee-eeeecCCCcccCCCCceEEEEcCCCCEEEEE-e
Q 001310 885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H 955 (1103)
Q Consensus 885 --h~~~V~~l~~s~dg-----~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~ 955 (1103)
-......+.|+.|+ ..++....-+.|+.|++........ +..+....+ ..|++++.|+||+++|.| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 23346678898887 4444445566788877765332111 111122222 269999999999999996 8
Q ss_pred CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 956 d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
||.|.|+++.+.+++.-....|..-|+.+.|+||.+++++.+.|....|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999888889999999999999999999999999999988764
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.2e-14 Score=162.97 Aligned_cols=194 Identities=17% Similarity=0.164 Sum_probs=147.7
Q ss_pred CCEEEEEcCCeEEEEEcCCceeeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEeccCCCC-
Q 001310 814 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR- 888 (1103)
Q Consensus 814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~- 888 (1103)
|.++++|.-..|+|||...-...+.+.. ....|+++.-+...|..+++|..||.|++||.+.. ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 4444444457899999988777777654 44578888776657899999999999999998764 356778889988
Q ss_pred -EEEEEEccCCC-EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310 889 -VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966 (1103)
Q Consensus 889 -V~~l~~s~dg~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~ 966 (1103)
|..+.+-+.|- .|++|+.||.|++||+..........+ ..+...++..+++..+++...+|+|+.+.|.||++.
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS- 1333 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecC-
Confidence 99999998774 499999999999999998432221111 112211234899999999999999877999999997
Q ss_pred ceEEEEe------eCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 967 LTCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 967 ~~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
|+.+..+ .....+.+.+++|.|---+||+|+.|.+|.||..+...
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 4444332 12225678999999999999999999999999887654
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.1e-13 Score=151.02 Aligned_cols=322 Identities=13% Similarity=0.130 Sum_probs=201.1
Q ss_pred EEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCc
Q 001310 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1103)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1103)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.++.+.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 3456667899999999998888888766555556789999999999865 5679999999999999987643 5
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCC-----CCCCceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001310 581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN-ENRIKILETPE 653 (1103)
Q Consensus 581 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~ 653 (1103)
...+++++||++++++. .++.+.++|.++.+.++.+..... .+.+..+..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999998865 789999999999999988765421 234556777888775555544 57777777665
Q ss_pred CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccc
Q 001310 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1103)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 733 (1103)
...+..... ..
T Consensus 160 ~~~~~~~~i---------------------------------------------------------------------~~ 170 (369)
T PF02239_consen 160 PKNLKVTTI---------------------------------------------------------------------KV 170 (369)
T ss_dssp SSCEEEEEE---------------------------------------------------------------------E-
T ss_pred ccccceeee---------------------------------------------------------------------cc
Confidence 422211000 01
Q ss_pred cccEEEEEEecCCcEEEEee-cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEE----
Q 001310 734 ANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF---- 808 (1103)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l---- 808 (1103)
........|+|++++++++. .+..+-++|....+. +.....|... |..+...+
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p---------~~~~~~~~php~ 228 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKP---------HPGPGANFPHPG 228 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSB---------EETTEEEEEETT
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccc---------cccccccccCCC
Confidence 12234567888888876653 456777777655432 1111112111 22222211
Q ss_pred -----EEecCCCEEE-EEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEE----eCCCeEEEEEcCCcee
Q 001310 809 -----ALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEV 878 (1103)
Q Consensus 809 -----~~s~d~~~l~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~ 878 (1103)
+....+...+ ..+.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.++|..+.+.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcce
Confidence 1222333332 223456678999999999999877666 7888899 88899887 4558999999999988
Q ss_pred EEEeccCC-CCEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCceeee
Q 001310 879 ISKLEGHS-KRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTC 923 (1103)
Q Consensus 879 ~~~l~~h~-~~V~~l~~s~dg~~l~s~s~--dg~I~iwd~~~~~~~~~ 923 (1103)
+..+.... ..+..+.|++||+.+..+.. ++.|.++|..+.+....
T Consensus 307 ~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 307 VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 87776332 35889999999997665544 33699999999776553
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.7e-14 Score=161.79 Aligned_cols=298 Identities=14% Similarity=0.192 Sum_probs=208.2
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg 408 (1103)
.+.......+.|+|-.. .++++.....|+|||.+.++.+..+.- -......|+.+.+-. |.
T Consensus 1061 ~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred hcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccch
Confidence 34444677889999887 577777678999999999988754221 112346788888876 67
Q ss_pred CEEEEEeCCCeEEEEEec-CC-C---ccccceEecccc----ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 409 SLLGVAYSKHIVQLYAYH-GG-S---DARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~-~~-~---~~~~~~~l~~h~----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
.+|++|+.||.|+||+-- ++ + .+.....+.++. +.=.-+.|-.... .|+++|.-..|+|||.....+..
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEe
Confidence 789999999999999643 22 1 111111122211 1113456766655 56777768899999999888887
Q ss_pred Eee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCcc--EEEEEEccCCCE-EEEEecCCC
Q 001310 480 SFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKE 552 (1103)
Q Consensus 480 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~ 552 (1103)
.+. +....|+++.-+-. .|..+++|..||.|++||.+.... ....+.|... |..+.+.+.|-. |++++.
T Consensus 1202 diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--- 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--- 1277 (1387)
T ss_pred ecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---
Confidence 764 34456777765433 478999999999999999876543 3455666665 999999987766 888876
Q ss_pred CceeEEEEeCCCCeeEEEE--ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----CCCCCC
Q 001310 553 GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPEN 625 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v 625 (1103)
+|.|++||++.......+ ..|..-++.++++..++....+++|+. +.|+||++.. +.+..+... .....+
T Consensus 1278 -~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 -DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred -CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCc
Confidence 455999999875222111 111101134899999999999999998 9999999864 333333221 123457
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
.|++|+|---++|+|+.|..|.||.....
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCCc
Confidence 89999999999999999999999987654
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1e-14 Score=165.79 Aligned_cols=235 Identities=13% Similarity=0.127 Sum_probs=162.2
Q ss_pred CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccc
Q 001310 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1103)
Q Consensus 356 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 432 (1103)
+..|.+||...... .. +..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~-~~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FI-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCc-eE-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 46899999865542 21 55688899999999999999988643 479999998875321
Q ss_pred cceEeccccccEEEEEEecCCCceEEEE-EcCCCceEEE--eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE-CC
Q 001310 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1103)
Q Consensus 433 ~~~~l~~h~~~v~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d 508 (1103)
...+.+| ...++|+|||+. |+. .+.+|.+.|| |+.++. +..+..+...+....|++ ||..|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2223344 346899999994 554 4567766555 665655 455666777777778854 677666554 57
Q ss_pred CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
|...+|+++..........+.. ....|+|||++++..+.+ .+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765433222222222 457899999999887642 2777999988765333222 234577999
Q ss_pred CCCEEEEEeCCCcEEEEEC--CCCeeEEEEcCCCCCCCCceEEEecC
Q 001310 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1103)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1103)
+|++++.++.++.+.+|.+ .+|.....+..+. ..+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999999998888875 3577777776543 34778899874
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3.9e-14 Score=161.73 Aligned_cols=257 Identities=13% Similarity=0.104 Sum_probs=182.1
Q ss_pred ccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCC----CccccceEeccccccEEEEEEecCCCceEEEEEcCCCc
Q 001310 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1103)
+..|+..|..++.+++ +.++++|+.||+|++|+...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6779999999998875 499999999999999998642 12222223333466899999999999 6888899999
Q ss_pred eEEEeCCCC--c-----eeEEeecC-CCceEEE-EeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--ecCCCccEEEE
Q 001310 467 IKVWDAVTG--S-----RTYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 535 (1103)
Q Consensus 467 i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~ 535 (1103)
|++.+++.- + +.+....+ .+.+.++ ++........++.+..-+.|..||......... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 11222222 2344444 333322234788888999999999987766553 34455689999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC---CCEEEEEe--CCCcEEEEECCCC
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~ 610 (1103)
+.+|-+.+++.|+. .|.+.+||++=+..+....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999976 6679999999988888776544 366777766654 34555543 5788999999999
Q ss_pred eeEEEEcCCCCC-----------------CCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310 611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1103)
Q Consensus 611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 656 (1103)
.+...+...... ......++...+..+.+|+.|..|+.||......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 777666433110 0112233334466889999999999999886543
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=2.5e-14 Score=159.68 Aligned_cols=250 Identities=17% Similarity=0.168 Sum_probs=183.2
Q ss_pred CCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCcc--cc-ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 395 h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
-...|.|+.|+| +..+||.|..+|.|.+||+..+... .. ......|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467999999999 6778888899999999999887641 11 1123468899999999765443359999999999999
Q ss_pred eCCCCce------eEEee------cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--------eEEecCCCc
Q 001310 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1103)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 530 (1103)
+++.-.. ..... .-...++++.|.+. +-..++.|+.+|.|..-+....+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345788888765 446789999999988743332221 225566788
Q ss_pred cEEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 001310 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 608 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~ 608 (1103)
+|.++.++|-+..++..+. +-+++||... ...++..+..+. ..+.+++|||-...+ +++..||.|.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998877766654 6679999987 556666666655 679999999987554 557789999999997
Q ss_pred CCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 609 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 609 ~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
... ++.+.... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 543 33333333 345678889999999999999999999998744
No 207
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.64 E-value=4.6e-11 Score=123.03 Aligned_cols=240 Identities=12% Similarity=0.106 Sum_probs=151.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCc-eEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310 733 KANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 811 (1103)
+...|.-..+..+++.++.+..|| .+-|++...... -.. . +.-+.|.++..+
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------kr~-e----~~lg~I~av~vs 410 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------KRI-E----KDLGNIEAVKVS 410 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------EEe-e----CCccceEEEEEc
Confidence 334466666666777788888887 677776544321 111 0 256789999999
Q ss_pred cCCCEEEEEcC-CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEeccCC
Q 001310 812 KNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHS 886 (1103)
Q Consensus 812 ~d~~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~ 886 (1103)
+||++++++.+ ..+.+.|+.++.....-+...+-|+..+|+| +++++|.+--+| .|++||+.+++....-. ..
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t 488 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT 488 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc
Confidence 99999999986 7799999999987666666778899999999 899999987776 78999999887654433 23
Q ss_pred CCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCceeeeeeeecCCCcccCC-----------------------
Q 001310 887 KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA----------------------- 936 (1103)
Q Consensus 887 ~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------------------- 936 (1103)
+.=.+-+|.||+++|..-+. |..+.=+.... ..+..++....+.....
T Consensus 489 a~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~--vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~ 566 (668)
T COG4946 489 AYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQR--VSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV 566 (668)
T ss_pred ccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEee--eccceEEEecCCCCChhhcCchhcCccccceehhhhcccc
Confidence 33356789999998876553 44333222221 11111111111111000
Q ss_pred -------CCceEEEEcCCCCEEEEE---------------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310 937 -------PSETHIQFHKDQTRFLLV---------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1103)
Q Consensus 937 -------~~v~~l~fs~dg~~l~~~---------------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1103)
+.-.+++=-.+|+.+.-+ .-|.+.+||+++.+.-. -...++++..|+|++.+.
T Consensus 567 eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss~rlS~D~s~il 641 (668)
T COG4946 567 EPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSSFRLSSDGSKIL 641 (668)
T ss_pred cccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH-----HhcccceEEEcCCCCEEE
Confidence 011222222233222211 12445556655433211 145789999999999988
Q ss_pred EEecCCcEEEEeCCC
Q 001310 995 TSFVDGTLSIHEASN 1009 (1103)
Q Consensus 995 t~~~dg~v~vWd~~~ 1009 (1103)
. -.||.++++|++.
T Consensus 642 v-k~d~kl~~f~vek 655 (668)
T COG4946 642 V-KLDGKLRLFDVEK 655 (668)
T ss_pred E-EeCCeEEEEeccc
Confidence 8 7899999999986
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=2.3e-12 Score=140.90 Aligned_cols=335 Identities=15% Similarity=0.180 Sum_probs=202.2
Q ss_pred ceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEE
Q 001310 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1103)
Q Consensus 455 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 534 (1103)
.+++++-..++.|.+.|..+.+.+.++......-..+.+ ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677888999999999999999999866554344555 5688899999999999999999999887776544 5678
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc----cCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001310 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1103)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 609 (1103)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+.++..++....++.. -+.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 55699999999999988765431 12467788888888855554 4558888889877
Q ss_pred CeeEE--EEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310 610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1103)
Q Consensus 610 ~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 686 (1103)
.+.+. .+... .......|+|++++++++ ..++.|-++|..+++.+..+.....+-
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~------------------- 217 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH------------------- 217 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE-------------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc-------------------
Confidence 65443 33322 234678999999987765 456789999998876554332110000
Q ss_pred ceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC
Q 001310 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1103)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~ 766 (1103)
..+.. .++.. ..+.+.. ....+...++.-...
T Consensus 218 ----------------------~~~~~-------------~~php-~~g~vw~--~~~~~~~~~~~ig~~---------- 249 (369)
T PF02239_consen 218 ----------------------PGPGA-------------NFPHP-GFGPVWA--TSGLGYFAIPLIGTD---------- 249 (369)
T ss_dssp ----------------------ETTEE-------------EEEET-TTEEEEE--EEBSSSSEEEEEE------------
T ss_pred ----------------------ccccc-------------cccCC-CcceEEe--eccccceecccccCC----------
Confidence 00000 00000 0001100 011111111111111
Q ss_pred ccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE---c-C-CeEEEEEcCCceeeEEecC
Q 001310 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTILTIMP 841 (1103)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~---~-d-g~i~iwd~~~~~~~~~~~~ 841 (1103)
.+.+|+....+.+...+.. ..+ .-+..+||++++.+. + + ++|.++|.++.+.+.++..
T Consensus 250 ------------~v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 250 ------------PVSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp ------------TTT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred ------------ccccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 2334555555545555442 233 667889999999998 2 3 7899999999988888753
Q ss_pred -CCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCceeEEEec
Q 001310 842 -PSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVISKLE 883 (1103)
Q Consensus 842 -~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~~~~~l~ 883 (1103)
....+..+.|++ +|+.+.....+ |.|.+||..+.+.+.++.
T Consensus 313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 223599999999 77755554433 379999999999988876
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=3.2e-14 Score=136.93 Aligned_cols=251 Identities=12% Similarity=0.229 Sum_probs=178.1
Q ss_pred ccCCcCceEEEecCCCc----eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 331 IEGSSSPMSMDFHPVQH----TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~----~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
..|.-+++.+.|.||.+ .+||+.+ ..+++|.+...+.... +...+....-..+..++++..|..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee----------hhhhhccCcccccCCccccccccc
Confidence 37888999999999873 3677654 5899999874322111 001111111334678999999998
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe---e
Q 001310 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1103)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 482 (1103)
|-++|.+++-|.+..|||+++|........+-.|...|..++|..++.+ .+++.|.||.||++|++.-+.-..+ .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 8899999999999999999998442233457799999999999998877 8999999999999999876543333 2
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCC-eEEEEEcCCCCe-eEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEE
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDG-KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~i 559 (1103)
....+...++|+.. |-.++++-..|. .|.+.|++.... ...+..|...|+.++|.|... .+.+++. +.+..+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 22456777787643 456777766654 588899987654 558899999999999999654 5666653 777999
Q ss_pred EeCCCCee------EEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEE
Q 001310 560 WNESEGAI------KRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKI 604 (1103)
Q Consensus 560 wd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 604 (1103)
||+.+.-. +..+. . .+.|+.+.|++. ..+++.+.. +++.+
T Consensus 315 WDl~q~~~~~~~dPilay~-a---~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT-A---GGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh-c---cceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99975322 11222 1 367999999965 456666553 34433
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3e-15 Score=154.15 Aligned_cols=296 Identities=14% Similarity=0.131 Sum_probs=224.1
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
|.+|.+.|..|.|...|..|++|+.|..|.+||+..+..... -..||...|....|-|......+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 788999999999999999999999999999999998865443 235899999988898865444799999999999876
Q ss_pred CC-CCcee--EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCc---cEEEEEEccCCC
Q 001310 472 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGL---GCTRMAYSANGR 542 (1103)
Q Consensus 472 ~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~s~dg~ 542 (1103)
+. ++.+. ..+..|.++|.-++..|. .-..+.+++.|+.+.-.|++.......+. .+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 44433 455679999999988664 33578999999999999988765443222 1222 467888999776
Q ss_pred -EEEEEecCCCCceeEEEEeCCCCee------EEEEeccc---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001310 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1103)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 610 (1103)
.+++++. +.++++||.+.-.. +..+..+. ...-.|++++++.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 4555554 66789998764321 22222221 1124689999998888888888899999995432 2
Q ss_pred ----------eeEEE-EcCCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310 611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1103)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 678 (1103)
..+.. +.+|.....|..+-| -|...++++|++-|.|.||+-.+++.+..+.+...-|+|+.-.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH----- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH----- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence 12223 566766666778875 5788999999999999999999999999998888888888776
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
|--..|++.+-|..|+||...
T Consensus 446 -----------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 -----------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -----------------CCCchhhccCCccceeeecCC
Confidence 445668899999999999864
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.9e-15 Score=150.31 Aligned_cols=197 Identities=22% Similarity=0.192 Sum_probs=151.3
Q ss_pred eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeee
Q 001310 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 926 (1103)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 926 (1103)
..++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.+|-....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--- 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--- 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh---
Confidence 7899999 89999999999999999999888888888899999999999999999999999 799999999842221
Q ss_pred ecCCCcccCCCCceEEEEcCCC---CEEEE--E-eCCeEEEEECCCceE-----EEEeeCCCCcCeEEEEEccCCCEEEE
Q 001310 927 QTPDGVMTLAPSETHIQFHKDQ---TRFLL--V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 995 (1103)
Q Consensus 927 ~~~~~~~~~~~~v~~l~fs~dg---~~l~~--~-~d~~v~iwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 995 (1103)
..+.+.. .....+.|+.|+ .+.+. . .-+.|..||+..... ..+.. .....|++++.|+||+++|.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 1111111 257788999888 33332 2 334566666543221 11111 12458999999999999999
Q ss_pred EecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 996 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
|+.||.|.|++..+.+...-+. ..|...|. .+.|+|+ .+.+++.+.|.+..|..+..
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk------------------~aH~~~VT--~ltF~Pd-sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK------------------EAHLGFVT--GLTFSPD-SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh------------------hhheeeee--eEEEcCC-cCcccccccCCceeEEEEee
Confidence 9999999999999888764444 13666564 7899998 88899999999999998854
No 212
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=7.8e-16 Score=168.44 Aligned_cols=343 Identities=17% Similarity=0.195 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccCCCCCcCcccccccc
Q 001310 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1103)
Q Consensus 171 rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1103)
-|..|+.|++++|+.+|+.|.++++++|||.+|+|++| .+..+.+.++.++.. ..+..
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEp---------------k~~~~ap~N~t~Rl~----~rel~--- 1071 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEP---------------KRLLEAPLNMTGRLG----TRELQ--- 1071 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCCh---------------HHHhhcchhhhhccc----chhhc---
Confidence 49999999999999999999999999999999999983 222222222111110 00000
Q ss_pred cCCCCCCcceeccCCCCCCccccCCccccccccCCcccccCcccCCCCCCCCCcchhhccccccCCccccCCccceeEec
Q 001310 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1103)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1103)
.+-.-.||. .-+...+...| ...+++
T Consensus 1072 -------------------------------------~~y~gV~g~----~~dr~~IFSRF-------------r~w~~f 1097 (1516)
T KOG1832|consen 1072 -------------------------------------SFYSGVHGN----RRDRQFIFSRF-------------RSWRSF 1097 (1516)
T ss_pred -------------------------------------CcccccccC----cccchhhHhhc-------------ccchhh
Confidence 000000000 00011111112 123667
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 410 (1103)
+.|...-+|++||-+.+ .|++|+..|.|+++++.+|..... ..+|..+|+.+.-|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 88989999999999988 699999999999999999987765 6679999999999999998
Q ss_pred EEEEeCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ec---C
Q 001310 411 LGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1103)
Q Consensus 411 las~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~---~ 484 (1103)
+++.+.-. ...+|++.+- ....+++. .-.++.|+...+. .++ |..-..+.+||++|+..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCcchhh
Confidence 88765433 4789999762 22222332 2457889876553 333 333346889999999888763 22 1
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1103)
...-+...|+| ...+++ .|| .+||.+..+.+..+.... ....-.|+|.|..++..+ .|||+++
T Consensus 1230 ~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhhhhHH
Confidence 11224445644 334444 234 469988776655443322 112336999999998864 4799999
Q ss_pred CeeEEEEecccccCCceEEEEEcCCCCEEEEEe--CC---------------CcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
.+.++...... -..+.|+..|+.++..- .| ...+-++..+...+.++.... .+..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 98887776544 45677888887665432 00 124455555556666665542 3566
Q ss_pred EEEecCCCEEEEEEC
Q 001310 628 ICFNKNGTLLAVIAN 642 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~ 642 (1103)
++-+|...++.+...
T Consensus 1365 lct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIEM 1379 (1516)
T ss_pred hhcCCccceEEEEec
Confidence 666776666665543
No 213
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=1.2e-11 Score=140.32 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=152.3
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc-----cEEEEEECCCCC
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~spdg~ 409 (1103)
+.|....+.-+.+ .++.++.++.+.|||...+...... .+.. ...-+.++++.-
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCcEE
Confidence 3444455566666 5788888899999999877655421 1222 223355788888
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE-EeecCCCce
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPV 488 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v 488 (1103)
++++|+.-+.|.+|+..... .. . .+.||.+.|.++.|+.||+ ++++.|.|.++|+|++++++... ..-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn-~p-~-~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDN-KP-I-RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccC-Cc-c-eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999998332 11 1 5789999999999999999 89999999999999999998876 667899999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
..+++.+. .+++++.|-+.++|+.+..+.. .+..| ...+..++..++...+++++. |+.+++|+....
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 99999753 8999999999999976654444 44444 347899999998888888876 566999987643
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.4e-13 Score=132.60 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=189.4
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-CCEEEEE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 414 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~ 414 (1103)
.+..++|++--- -+|++..|-.|+|||-.... ... +-......|+|++|-|. ++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 567788887443 46888899999999976632 211 01124568999999994 5677888
Q ss_pred eCCCeEEEEEecCCCcc-----------ccceEeccccccEEEEEEecCCCceEEEEEcC-CCceEEEeCCCCceeEEee
Q 001310 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-----------~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~ 482 (1103)
+..| |.||........ .+...-.|| .+|+++.|.+||. .+++++. |..|.|||..++..+....
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7776 999987532111 111223455 6899999999999 6777774 5689999999998877665
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
...+.+.-+.|+| |+.+|+++.-|+..++|+....-.........+.|...+|+|+|++|+.+... ...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 5667788888855 77899999999999999655443333444445589999999999988765532 222322111
Q ss_pred C--CCe-----------eEE------EEecccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeEEE
Q 001310 563 S--EGA-----------IKR------TYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 615 (1103)
Q Consensus 563 ~--~~~-----------~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~ 615 (1103)
. .+. .+. ...+...-.+...+++|.|.|.++++.-.. +.|.+||...--.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1 110 000 111111124678999999999999986533 3466788765433332
Q ss_pred Ec-CCCCCCCCceEEEec---CCCEEEEEECCCeEEEEEcC
Q 001310 616 ID-AGGGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 616 ~~-~~~~~~~v~~v~~s~---~g~~l~~~~~dg~i~iw~~~ 652 (1103)
.. +.........++|+| ++.+|.++-..|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 21 111112245677776 67888888888888877654
No 215
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=1.2e-13 Score=154.36 Aligned_cols=259 Identities=17% Similarity=0.186 Sum_probs=186.6
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
..+.-- .+|.|++|+|....++|.|..+|.|.+||+..+..... ..-......|..+|+.+.|-.+
T Consensus 237 ~~~~~~-s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 237 LVLESP-SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred EEEecC-CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEecc
Confidence 344443 49999999999888999999999999999988765311 0011225579999999999875
Q ss_pred CC--EEEEEeCCCeEEEEEecCCCccccceEec---------cccccEEEEEEecCCCceEEEEEcCCCceEEEe---CC
Q 001310 408 GS--LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AV 473 (1103)
Q Consensus 408 g~--~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd---~~ 473 (1103)
-. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.-=+ ..
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCc
Confidence 44 49999999999999876533211110111 11236899999987776 788899999887733 22
Q ss_pred CCc-----eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-CCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 474 TGS-----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 474 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
.+. .+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. .......+......+++++|||-...++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 222 1335567889999999876543 2344444 9999999887 555666677777779999999988777766
Q ss_pred ecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310 548 GTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
. +++|.|.+||+.... ++.+..... ...+.+.|+++|+.+++|...|++.+|++..
T Consensus 460 ~---d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 460 V---DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred E---cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5 457889999997543 333333222 5677888999999999999999999999864
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=2.8e-13 Score=141.43 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.3
Q ss_pred ecCCCEEEEEc-CCeEEEEEcCCceeeEEec----CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001310 811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 875 (1103)
Q Consensus 811 s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 875 (1103)
.+.+--+.++- -|.|.+.|....+..+.+. -....++++.|-|.+...+.++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 35555556664 5888888876532222121 13368999999997677888888999999997531
Q ss_pred ----cee--------------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310 876 ----SEV--------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1103)
Q Consensus 876 ----~~~--------------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1103)
+.. +..+.--.+.|...+|||||++||+.+.||.++|+|..+.+ ++...+... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 111 11222224578889999999999999999999999999854 233333333 3
Q ss_pred CceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc
Q 001310 938 SETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1103)
Q Consensus 938 ~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1103)
...|++|||||++|++| .|.-|.||.+...+.+.. -.+|...|+.|+|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 78999999999999995 899999999999988876 778999999999987
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=2.9e-11 Score=137.24 Aligned_cols=199 Identities=16% Similarity=0.161 Sum_probs=155.5
Q ss_pred cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce--EEEEeeecCCccEEEEEECCCeEEEEEcCCCC
Q 001310 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1103)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1103)
.|....+.-+.+ .++.+..+..+-+||...+.....+....... .++-+-.+.+.-++++|+.-+.|.+|+....+
T Consensus 89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344455566666 57777778899999988887766654332221 11222234455789999999999999988555
Q ss_pred eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE-EEecccccCCceEEEEEcCCCCEEEEEeCC
Q 001310 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1103)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 599 (1103)
....+.+|.+.|..+.++.||+++++++. |..+++|++.+++... ..-+|. ..+..+.|.|+ .+++++.|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED 237 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence 55578999999999999999999999987 5669999999988776 555666 89999999997 89999999
Q ss_pred CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
.+.++|+.+ +..+..+..|.. ..+..++..++....++++.|+.+++|++...
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999765 444556666654 46899999999999999999999999998754
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=2.5e-13 Score=133.07 Aligned_cols=235 Identities=14% Similarity=0.161 Sum_probs=178.1
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV- 473 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~- 473 (1103)
-..+|+|.||++|+..+|.+-....|.||.....+......++..|...|+.++|+|.+. .|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346999999999999999999999999999998887777778999999999999999998 69999999999999973
Q ss_pred CC--ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE----EecCCCccEEEEEEccCCCEEEEE
Q 001310 474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 474 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
.+ ++...+..+....+++.|+|. +..+++|+.-..|.||-++....-. .-+.....|.++.|+|++-+|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 445566678899999999764 4699999999999999887655432 334455679999999999999998
Q ss_pred ecCCCCceeEEEEeC-----CC-------------CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310 548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
+. |+..+++.. ++ |++...+.. ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 334555532 11 222233322 247899999999999999999999999999877
Q ss_pred Ce-eEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310 610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1103)
Q Consensus 610 ~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 643 (1103)
.. .+...... . -+..++.|-.+... +.++.|
T Consensus 238 p~~~v~~~~~~-~-lP~ls~~~ise~~v-v~ag~~ 269 (361)
T KOG1523|consen 238 PSERVQSVATA-Q-LPLLSVSWISENSV-VAAGYD 269 (361)
T ss_pred Cchhccchhhc-c-CCceeeEeecCCce-eecCCC
Confidence 65 23333222 1 34566666655443 334444
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.9e-14 Score=158.98 Aligned_cols=230 Identities=18% Similarity=0.189 Sum_probs=151.7
Q ss_pred CCccceeEecccCCcCceEEEecCCCceEEEEEcC---CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
+......+.+..|...+...+|||||+++ +..+. +..|.+||+.+++...... +.+|
T Consensus 190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~-- 249 (429)
T PRK01742 190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH-- 249 (429)
T ss_pred CCCCCCceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc--
Confidence 33444567788888899999999999964 54443 2479999998886432100 2333
Q ss_pred cEEEEEECCCCCEEEEEe-CCCeEEEE--EecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 398 SVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
..+++|||||++|++++ .+|.+.|| |+.++.. . .+..+...+...+|+|||+. ++++...++...||++..
T Consensus 250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 34689999999998875 57765555 5555542 2 45567777889999999995 334455678888887653
Q ss_pred C-ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 475 G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 475 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
. .....+ .+.. ....| +++|..|+..+.++. .+||+.++........ .....+.|+|||++++.++.++.
T Consensus 324 ~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~- 394 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQI--SADGKTLVMINGDNV-VKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL- 394 (429)
T ss_pred CCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCCE-EEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-
Confidence 2 222333 3433 34455 557788888877654 4599987765433222 23356789999999999876322
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1103)
...+.+++ .+|+..+.+..+. +.+...+|+|-
T Consensus 395 ~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 395 GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 22233444 3577777887666 67788888874
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.3e-14 Score=149.33 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=170.6
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
..+.|.||++-|.|++|+.||. +|++||.|-.+.|||.-..+.++. +-.||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 3467899999999999999998 899999999999999987777654 367899999999999
Q ss_pred C--CCCEEEEEeCCCeEEEEEecCCC-------ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310 406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1103)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1103)
| +.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|+....
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 57789999999999999998521 12233356689999999999999965 89999999999999987532
Q ss_pred -eeEE---------eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-----ecCCCccEEEEE-EccC
Q 001310 477 -RTYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN 540 (1103)
Q Consensus 477 -~~~~---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d 540 (1103)
+... +...--...++.++|. +..+|+.|+.|-..++||.+....... ......+..|+. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1111 1111123456777766 447999999999999999532211110 011111122222 1221
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 616 (1103)
+- .. ..+..... ...++-+.|+|+|.-|+..-....|+++|+..++....+
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 11 00 00100000 023667889999988887666678999999987765544
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1e-12 Score=130.58 Aligned_cols=300 Identities=12% Similarity=0.140 Sum_probs=189.5
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
.+..++|++.-..++++..|-.|++|+.... ....++.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks----------------------------------------- 137 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKS----------------------------------------- 137 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecc-----------------------------------------
Confidence 3567899987777888999999999987652 2222211
Q ss_pred eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1103)
Q Consensus 704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 783 (1103)
.....|.+++|-|.+..-++.+..+.|.+|..+..... ...++..
T Consensus 138 ----------------------------~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~~~ 182 (445)
T KOG2139|consen 138 ----------------------------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIRMM 182 (445)
T ss_pred ----------------------------hhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccccc
Confidence 02345777888887666666666667888876543210 0001110
Q ss_pred cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE
Q 001310 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 861 (1103)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las 861 (1103)
+..+... +...+| .+|+++.+.+||..+++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|.+
T Consensus 183 ---s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfa 255 (445)
T KOG2139|consen 183 ---STHHLQV--LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFA 255 (445)
T ss_pred ---cccchhh--eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEE
Confidence 1111111 122234 8999999999999999998 57899999999887766655667889999999 8999999
Q ss_pred EeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc----ee------eeee------
Q 001310 862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG----IQ------TCRS------ 925 (1103)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~----~~------~~~~------ 925 (1103)
++-|+..++|............--.+.|...+|+|+|++|..+.... =++|.+.-.. .. ....
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 99999999995543322222333455899999999998876544322 2344432211 00 0000
Q ss_pred eecCCCcccCCCCceEEEEcCCCCEEEEEeCC---------eEEEEECCCceEEEEeeCCC--CcCeEEEEEcc---CCC
Q 001310 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCR 991 (1103)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~---------~v~iwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~ 991 (1103)
+....+.....+++.+++|.|.|.+||+...+ .|.+||....-.+...+.+. ...-..++|+| +|.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 11112222223578999999999999995322 36678776543333222221 22345567765 667
Q ss_pred EEEEEecCCcEEEEeCC
Q 001310 992 MVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 992 ~l~t~~~dg~v~vWd~~ 1008 (1103)
+|..+-.-|.+.-|++.
T Consensus 415 lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEEeccCceEeeeeE
Confidence 77777777888777764
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.4e-12 Score=135.26 Aligned_cols=518 Identities=11% Similarity=0.144 Sum_probs=307.0
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc------------cccceEeccccccEEEEEEecCCCceEEEEEc
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1103)
......|++|+....|+|+|+.||.++|-.+.+... +..-.++.||...|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456789999999999999999999999998865421 112236789999999999998888 699999
Q ss_pred CCCceEEEeCCCCceeEEe--ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC
Q 001310 463 DDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1103)
Q Consensus 463 ~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1103)
.+|.|.||-+-.|+-...+ ....+.|.+++| +.+|..++..-.||.|.+=.++... +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 9999999998877654333 224456788888 5588899999999998876655432 1211222233457889999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC-------eeEEEEecc-cccCCceEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i 604 (1103)
.+.++.+-. ++.+.++|.+.. .+.....+. ......+..+.|. |+...++.+-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998877655 344888886532 111111110 0001224445553 57889999999999988
Q ss_pred EECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC---------eEEEEEcCCCCeeEeccccccceeeeEEecC
Q 001310 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1103)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~ 675 (1103)
..-.+......+... -.+....|+++|..|++++.+. .|.+|. .-|..+.+++.+...|++++|-..
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence 765554433333322 3467899999999999987643 233332 234445555555555555555432
Q ss_pred CceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC
Q 001310 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1103)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1103)
+..++.. .|+.|.+=++. |+-+ -.....
T Consensus 320 gLriA~A-----------------------vdsfiyfanIR---------------------------P~yk--Wgy~e~ 347 (1189)
T KOG2041|consen 320 GLRIAIA-----------------------VDSFIYFANIR---------------------------PEYK--WGYIEE 347 (1189)
T ss_pred ceEEEEE-----------------------ecceEEEEeec---------------------------ccce--EEEeee
Confidence 2222111 11111111110 1000 000000
Q ss_pred ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEc-CCc
Q 001310 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV-MTF 833 (1103)
Q Consensus 756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~-~~~ 833 (1103)
..|.+|. +.....--+..||..+.+.... .-....+++++.+.-.|+.-. ++.+.-++. ++.
T Consensus 348 TvVy~y~---------~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~ 411 (1189)
T KOG2041|consen 348 TVVYVYQ---------KEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR 411 (1189)
T ss_pred EEEEEEc---------cCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCCcchhhhhcc
Confidence 1111111 0111112345666666553322 233456777777766666554 455554422 111
Q ss_pred eeeEEec-----C-----CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-------------------------
Q 001310 834 KTILTIM-----P-----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------------------------- 878 (1103)
Q Consensus 834 ~~~~~~~-----~-----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------------------------- 878 (1103)
..+..+. + .-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 412 ~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~ 489 (1189)
T KOG2041|consen 412 SRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQ 489 (1189)
T ss_pred cceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchh
Confidence 1111110 0 001122111122 55677777766 477886543211
Q ss_pred -------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310 879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1103)
Q Consensus 879 -------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 951 (1103)
..++.|..++|.+++.| .++|..+-..|.|.-+.+.+.-+.....+ ...+.+++..-+...+
T Consensus 490 d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~---------n~~~y~~~lNCnstRl 558 (1189)
T KOG2041|consen 490 DRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV---------NPSIYSIKLNCNSTRL 558 (1189)
T ss_pred hceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc---------CchheeEeeccCcchh
Confidence 23445667788888886 57888899999999999988543332111 1258889999998888
Q ss_pred EEE-eCCeEEEEECC---CceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310 952 LLV-HETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus 952 ~~~-~d~~v~iwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
|+- .-|.+.+.|+. +|..+..+.......|+.+.|..|...|+.--+...++|++
T Consensus 559 AiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 559 AIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred hhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 874 66777777775 46666555666678899999988887666554455555554
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.4e-13 Score=155.38 Aligned_cols=365 Identities=12% Similarity=0.049 Sum_probs=217.3
Q ss_pred CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCc---cceeeeccC
Q 001310 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS 730 (1103)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~ 730 (1103)
|..+..+..|+..+..++.+ ++++.++++|+.||+|++|+...-... ........
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys- 1095 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS- 1095 (1431)
T ss_pred ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-
Confidence 45666677777777777776 577899999999999999997642222 11111111
Q ss_pred ccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1103)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 810 (1103)
.....+..+.+.+.+..+++++.||.|++.+++.... .... +.+....... ....-+.+-++
T Consensus 1096 -~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~~-----------~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1096 -PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKRV-----------ATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred -ccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccce-----------eeeeeccccc--CCCceEEeecc
Confidence 1457889999999999999999999999999876311 0000 0111111111 12223334444
Q ss_pred ecC-CC-EEEEEc-CCeEEEEEcCCceeeEEecC--CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-
Q 001310 811 SKN-DA-YLFSAS-GGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG- 884 (1103)
Q Consensus 811 s~d-~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~- 884 (1103)
... +. .++.+. .+.|..||+.+.....+++. ..+.|++++.+| .+.++++|+..|.+.+||++-+.++..+.-
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence 433 23 455555 48899999987766665543 457899999999 899999999999999999998888877652
Q ss_pred CCCCEEEEEEccCC---CEEEEEe--CCCeEEEEEcCCCceeeeeeeecCCCc-----------ccCCCCceEEEEcCCC
Q 001310 885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGV-----------MTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 885 h~~~V~~l~~s~dg---~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~l~fs~dg 948 (1103)
+..+|..+...|-- ...++++ ..+.|.+|++.+|.............. .+........++...+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 55778888777643 4555554 467899999999865442222200000 0111122333444445
Q ss_pred CEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcE-EEEeCCCcee--EEeeccccccCC
Q 001310 949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLEV--QCRILSTAYLRP 1024 (1103)
Q Consensus 949 ~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v-~vWd~~~~~~--~~~~~~~~~~~~ 1024 (1103)
.++.+ ++|..|+.||....+...-...+.+.......++.+ ..++.++.--.. .......+.. ..........+.
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 55555 589999999998665542212232333333333322 223333221111 1111111110 000110011111
Q ss_pred CCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310 1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
.++ ..|-..|..++.+..++ .+|++++.||.|.||.
T Consensus 1396 ~ps--------~~H~d~Itdma~~~~~q--~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPS--------TYHHDPITDMATLKSEQ--PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCc--------ccccchhhhhhhhccCc--cEEEEecCCCeeeecC
Confidence 111 14667788777777654 6999999999999995
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=6.9e-12 Score=123.15 Aligned_cols=241 Identities=13% Similarity=0.173 Sum_probs=168.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-----CCceEEEeC
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 472 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-----d~~i~iwd~ 472 (1103)
...+++|..|..-+++|..+| .+||+.+.-+... .-..+.+.+.-+..---.+.+.|+-|+. -..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 344599999999999998888 8999987532211 1111222222222222233323343333 246999996
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-CCCeeEEecCCC--ccEEEEEEccCCCEEEEEec
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~~ 549 (1103)
...+++.++. ...+|.++.+.. ..|+. -.++.|.+|.+. +.+....+.... ....+++-..+..+|+.-+
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r----~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg- 155 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR----DRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG- 155 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC----CeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence 6777887775 678899999843 23444 356789999987 444444443332 2343444333444444433
Q ss_pred CCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEEcCCCCCCCCc
Q 001310 550 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 626 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1103)
-.-|.|++-|+...+. ...+..|. ..|.+++.+.+|..++++|..|+ |||||..+|+.+..+........+.
T Consensus 156 --~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 156 --FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred --CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 2357799999876555 35667777 99999999999999999999998 7999999999999998766667899
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 627 ~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
+++|||++.+|+++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
No 225
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=7e-09 Score=126.13 Aligned_cols=439 Identities=12% Similarity=0.135 Sum_probs=249.7
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEE----EecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1103)
...+.|.++.+-+|...|+.+..+|.|.+. +..+.. ......-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999998 444432 112334566899999999999 6666666777777
Q ss_pred EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC----------e----eEEecCCCccEEEE
Q 001310 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----------A----RVDYDAPGLGCTRM 535 (1103)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~----~~~~~~~~~~i~~~ 535 (1103)
-+ .+-..+....-+..... ....++.|....=.-+.-..++ . ...+. ....-..+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 65 55555544433321110 0112222111100000000000 0 00111 23345678
Q ss_pred EEccCCCEEEEEecCCC-C-ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 001310 536 AYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKV 610 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~ 610 (1103)
+|-.||.++++.+.+.. + ...+++|+-+ |.....-..-. +--.+++|-|.|+.|++... ...|.+|.. +|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC
Confidence 99999999998876333 2 5789999965 66544444322 45567899999999888653 456777764 34
Q ss_pred eeEEEEcCC--CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310 611 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1103)
Q Consensus 611 ~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 688 (1103)
-.-..+... .....|..+.|++|+..||+...|. |.+|-..+-...-...- .+.
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~--------------- 346 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS--------------- 346 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc---------------
Confidence 444334332 2334689999999999999988765 99998776533211110 000
Q ss_pred EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC-cEEEEeecCceEEEeecCCCc
Q 001310 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRND 767 (1103)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~~~ 767 (1103)
....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 347 --------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~--- 379 (928)
T PF04762_consen 347 --------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA--- 379 (928)
T ss_pred --------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE---
Confidence 01112225565543 335555555666555432
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec-CCCEEEEEcCCeEEEEEcCCcee-----eEEecC
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKT-----ILTIMP 841 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~~dg~i~iwd~~~~~~-----~~~~~~ 841 (1103)
|++..+. ..+| |...+++..+.++.+-.+...-. ...+.
T Consensus 380 ---------------~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~- 424 (928)
T PF04762_consen 380 ---------------WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE- 424 (928)
T ss_pred ---------------EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-
Confidence 2211111 0011 11223333334455555443211 12232
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--------EEEe----------ccCCCCEEEEEEccCCCEEEE
Q 001310 842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKL----------EGHSKRVTGLVFSDALNILVS 903 (1103)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l----------~~h~~~V~~l~~s~dg~~l~s 903 (1103)
....|.+++|++ ++..+|+-..||.|.+|....... ...+ ..-...+..++|..+...++.
T Consensus 425 ~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (928)
T PF04762_consen 425 LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL 503 (928)
T ss_pred CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence 346899999999 676799999999999998554221 1111 112345788899888777776
Q ss_pred EeCC---CeEEEEEcCCCcee-eeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCc
Q 001310 904 SGGD---AQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 967 (1103)
Q Consensus 904 ~s~d---g~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~ 967 (1103)
...+ ..+.++++...+.. ......... ..+..+...++...++. ..+|.+...+....
T Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 504 SDSDSNQSKIVLVDIDDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EecCcccceEEEEEeccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 6654 57888888543211 111111111 13555555566553443 67888887666544
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=3e-13 Score=132.51 Aligned_cols=238 Identities=14% Similarity=0.103 Sum_probs=177.9
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
-..+|+|.+|++|++ .+|++-....|.||.......-. ....+..|...|+.+.|+|.+..|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 346999999999998 68888888899999987665211 1123778999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----EEeecCCCce
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPV 488 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v 488 (1103)
+|+.|..-+||....+...++...+..|...++++.|+|.+. .+++|+.-+.|.||-.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666666667888999999999999999 7999999999999976654322 2223466789
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEc-----CCC-------------CeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLY-----DSL-------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
.++.|++ ++-++++|+.|+..+++.. +.. ....++....+.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 9999987 4478999999999999853 111 111233355668999999999999998875
Q ss_pred CCCceeEEEEeCCCCe-eEEEEecccccCCceEEEEEcCCCCEEEEEeCC
Q 001310 551 KEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 599 (1103)
+..+.+-|..... .+....... -+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc---CCceeeEeecC-CceeecCCC
Confidence 5558887766554 333333322 46666666554 345555544
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.2e-12 Score=146.20 Aligned_cols=238 Identities=10% Similarity=0.114 Sum_probs=156.8
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC---CCeEEEEEecCCCcccc
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1103)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887554322 3346678999999999999997642 4579999998875322
Q ss_pred ceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-Ce
Q 001310 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1103)
Q Consensus 434 ~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 510 (1103)
+....+.+...+|+|||+. ++++.+.++ .|++||+.+++..+ +..+...+....|+ +||..|+..+.+ +.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence 2223333557899999995 233334454 58999998887654 33344556667774 577778776654 44
Q ss_pred EEEE--EcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 511 i~iw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
..+| |+.++... .+..........+|+|||++++..+... +...|++||+.+++... +... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence 4555 55554432 3333344556789999999998876432 35579999998886543 3321 1234577999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 589 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
||+.|+.++.++. ++++++. |.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 9999999887764 6777874 55555555432 3467788887
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=138.19 Aligned_cols=284 Identities=14% Similarity=0.190 Sum_probs=205.6
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
+|...-+.|..||||+|++|+|..--.|++||+.+-.+...+.+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 45668889999999999999999999999999987654433211 23456666667777777
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
+.-..|.+|.+-.--+ .... ..+. ..-..++++.-... |+.++....|+-++++.|+-+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 7777888877654322 1110 0111 11224444443332 4445555579999999999999998888999999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------Cc-----cEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1103)
.+++. ..+|++|+.+|.|.+||.+.......+... .. .|+++.|+.+|-.+++|+. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88654 358999999999999999877655443321 11 4899999999999999976 5669999
Q ss_pred eCCCCeeEEEEecccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
|+++.+++..-.... .-+|..+.|.+. ++.+++ .+...++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 999988765433222 367888999766 344444 34578999999999999888654 4489999999999999
Q ss_pred EEECCCeEEEEEcCCC
Q 001310 639 VIANENRIKILETPES 654 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~ 654 (1103)
++-.++.+..|=++..
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999988887766643
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=2.8e-12 Score=125.79 Aligned_cols=240 Identities=12% Similarity=0.170 Sum_probs=168.3
Q ss_pred CeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCC--CeeEEEEcCCCCCEEEE-EeCC------CeEEEEEcC
Q 001310 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIAI-GMDD------STILIYNAR 874 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~las-g~~d------g~v~iwd~~ 874 (1103)
...+++|..|...++++.+...+||+.+..+.......+.. .+..+-|-. ++||. |+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence 44568999999999999998899999987554333332222 333344432 34443 4333 489999966
Q ss_pred CceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-
Q 001310 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 953 (1103)
Q Consensus 875 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~- 953 (1103)
..+++.++. ...+|.++.+++| .+++. -.+.|+||...+.-. ....+.+..... ...+++=..+-.+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEcC
Confidence 677777777 6788999999876 45444 356799999985321 112333322211 2333333333444554
Q ss_pred E-eCCeEEEEECCCceE-EEEeeCCCCcCeEEEEEccCCCEEEEEecCCc-EEEEeCCCceeEEeeccccccCCCCCCCc
Q 001310 954 V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSHDK 1030 (1103)
Q Consensus 954 ~-~d~~v~iwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1103)
| .-|.|.|-|+...+. ......+|...|.+++.+-+|..+||+|..|+ |||||..+|++++.+++..
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------- 224 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------- 224 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC----------
Confidence 5 568999999986665 23457789999999999999999999999998 8999999999999988321
Q ss_pred eeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310 1031 ILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus 1031 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
-...|+ .++|+|+ ..+|+++++.|+|+++.+....
T Consensus 225 -------d~A~iy--~iaFSp~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 -------DRADIY--CIAFSPN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -------chheEE--EEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence 122366 5688888 8999999999999999985433
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.1e-12 Score=146.16 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=161.0
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC---CCeEEEEEecCCCcccc
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1103)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888875543321 4568889999999999999998763 468999999887532
Q ss_pred ceEeccccccEEEEEEecCCCceEEEEEcCCCc--eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CC-
Q 001310 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1103)
Q Consensus 434 ~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 509 (1103)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+ +||..|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 34456667889999999995 3455666655 77779887765 4455566556666774 57777777663 33
Q ss_pred -eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 510 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
.|.++|+..+.... +......+....|+|||+.|+...... +...|.+||+.++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57778876654433 322344566788999999999876432 346799999866543 33332 1 2456788999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 589 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
||+.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875542 3578888876554 3443221 256667776
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=4.1e-14 Score=145.00 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=212.7
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
..-....+.++.+|++|+.|+..|.|..+|+.++..... + .-...|.++.|..+.+ +++ ......++||| ..
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---i-~v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~ 199 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---I-NVMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN 199 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeeee---e-ehhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence 345677899999999999999999999999999865442 2 2345788999998877 444 44577899999 88
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
|..++.++.| ..|..+.|.|. --+|++++..|.++.-|+.+++....+....+.+..++-+|-+..+-.|.. .
T Consensus 200 GtElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n 272 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N 272 (545)
T ss_pred CcEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence 9999998755 46777777653 367889999999999999999998888888889999999998888877765 7
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 634 (1103)
|+|.+|...+.+.+..+..|. ++|.++++.++|+++++.+.|..++|||++....+.++... .+...+++|..|
T Consensus 273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG 346 (545)
T ss_pred ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc
Confidence 789999999999999998888 99999999999999999999999999999988877666552 235788898766
Q ss_pred CEEEEEECCCeEEEEEcCCC-----CeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310 635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 686 (1103)
+||.+. ...+.||.-... ........-...|..+.|.|...++++|-..|
T Consensus 347 -lLA~~~-G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 347 -LLALSY-GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred -ceeeec-CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 444443 346899953321 11111122234788999999998888876665
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.5e-12 Score=147.53 Aligned_cols=233 Identities=14% Similarity=0.105 Sum_probs=152.7
Q ss_pred cCCccceeEecccCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
.+......+.+..+...+...+|||||++++.+.. .+..|.+||+.+|+.... ....+
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~~ 243 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFPR 243 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCCC
Confidence 33334444566667778999999999996554432 245799999988864431 11223
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-CCc--eEEEe
Q 001310 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWD 471 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~--i~iwd 471 (1103)
.+..++|||||+.|+.. +.+| .|.+||+.+++.. .+..+...+....|+|||+. |+..+. ++. |.++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEE
Confidence 34568999999999875 3344 5899999887533 24444556788999999994 544443 444 44557
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
+.+++. ..+..+........| ++||.+|+..+.+ ..|.+||++++.... +.. ........|+|||+.++..+
T Consensus 318 ~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 318 INGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEE
Confidence 666654 344434444455666 4577788776543 358889988776443 222 12334678999999999988
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
.++. ...++++++ +|...+.+.++. +.+...+|+|
T Consensus 393 ~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred cCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 6443 456888887 455556666655 6677788876
No 233
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.52 E-value=2.7e-09 Score=110.35 Aligned_cols=397 Identities=13% Similarity=0.113 Sum_probs=222.1
Q ss_pred eeEecccCCcCceEEEecCCCceEEEE----Ec--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llas----gs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
..+.+..|-+-|+...|+|||+.++.+ |+ ....+.+.+.+.|+..+..- + | ...
T Consensus 70 ~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------f-G--r~f 129 (668)
T COG4946 70 KPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------F-G--RRF 129 (668)
T ss_pred CeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------e-c--ccc
Confidence 345667788899999999999975542 22 23568888888888665311 2 2 233
Q ss_pred EE-EEECCCCCEEEEEeCCCe----EEEEEecCCCc-cccceEeccccccEEEEEEecCCCceEEEEEcCCC--------
Q 001310 400 NR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-------- 465 (1103)
Q Consensus 400 ~~-~~~spdg~~las~~~d~~----i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~-------- 465 (1103)
+. .-|+|||+.|++...-.- -.+|.+..... .. .-.-++.+.+.+- ||. ++.|-.--
T Consensus 130 T~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg~---ivigRntydLP~WK~Y 200 (668)
T COG4946 130 TRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DGI---IVIGRNTYDLPHWKGY 200 (668)
T ss_pred ceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CCE---EEEccCcccCcccccc
Confidence 33 459999999998754321 23444443221 11 1123445555553 443 33332111
Q ss_pred ----ceEEEeCCC-CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC
Q 001310 466 ----TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1103)
Q Consensus 466 ----~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1103)
.=++|--.. |+....+-.-.+.|.+-.+. .++.......||.=.+|..+-...-..-...-....+=..+.|
T Consensus 201 kGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsD 277 (668)
T COG4946 201 KGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSD 277 (668)
T ss_pred cCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCC
Confidence 124453322 22222222122222221110 1122223334444344433221111111111112333445779
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc-----CCceEE---EE-Ec-CCCCEEEEEeCCCcEEEEECCCC
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSV---VH-FD-TAKDQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~---~~-~~-~~~~~l~~~~~dg~i~iwd~~~~ 610 (1103)
|+.++... .+-|+++|..+......--+.... ...+.- +. |+ .+|++++..|. |...|.+...+
T Consensus 278 GkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 278 GKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 99988754 233999998876554332221100 000111 11 22 24677777764 66777776655
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceE
Q 001310 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1103)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 689 (1103)
-.++.-. ...|.-..+..+++-++.|..|| .+-|++..+++.-...
T Consensus 352 ~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e----------------------------- 398 (668)
T COG4946 352 YSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE----------------------------- 398 (668)
T ss_pred eeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----------------------------
Confidence 5444321 22366677777778889999988 8899988876422211
Q ss_pred ecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccc
Q 001310 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1103)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 769 (1103)
..-+.|.++..+++|+.++++.....+.+.|++.+..
T Consensus 399 ------------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 399 ------------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred ------------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence 1335688899999999999888888777777655431
Q ss_pred cccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C----CeEEEEEcCCceeeEEecCCCC
Q 001310 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSP 844 (1103)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d----g~i~iwd~~~~~~~~~~~~~~~ 844 (1103)
.+.. .....-|+.++++|+++++|.+- + ..|+++|+..++...... +.+
T Consensus 436 ---------------------~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 436 ---------------------RLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred ---------------------eEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 1111 12567799999999999999985 3 459999999877655433 444
Q ss_pred CeeEEEEcCCCCCEEEEEe
Q 001310 845 TATSLAFNPHDNNVIAIGM 863 (1103)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~ 863 (1103)
.-.+-||.| |+++|..-+
T Consensus 490 ~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred cccCcccCC-CCcEEEEEe
Confidence 556678888 888877654
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.4e-10 Score=125.22 Aligned_cols=539 Identities=10% Similarity=0.097 Sum_probs=320.7
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
...|++|+.... ++|+|+.||.+++-.+.+...-.... -+.+.....-...+.||++.|.-+.|+.+.+.|-++.
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999887 69999999999999987654322100 0111222223345899999999999999999999999
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-EEeecCCCceEEEEee
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1103)
.+|.|.||-+-.|.-.... .-....+.|.+++|..||. .+.....||.|.|=.++..+.- +.+++. -...+.|
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 9999999999887644322 1234556799999999999 5777777887766554332211 112211 1123445
Q ss_pred ecCCccEEEEEECCCeEEEEEcCCCC-------eeE----EecCCCccEEEEEEc--------cCCCEEEEEecCCCCce
Q 001310 495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES 555 (1103)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~dg~~l~~~~~~~~~~~ 555 (1103)
++|...++.+-..|.++++|.+..- +.. .+...+..+..+.|. ||...|+++.. +|
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4466677777888999999865321 111 111122234455543 57778888875 34
Q ss_pred eEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 556 FLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 556 ~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
.+.+..-. ...++..-.+ -.+....|+++|..++.++.+ +.|.+|. .-|..+.++..++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 45554322 2233222222 357788999999999988743 2455554 34677777776644 58
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1103)
++++|-..|-.++.+- |+.|.+=++...-....+. ..| . ..+.+...|
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~Tv---V----------------y~y~~~e~p--------- 359 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---ETV---V----------------YVYQKEELP--------- 359 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---eEE---E----------------EEEccCCCc---------
Confidence 9999988777776654 4677776655432111110 000 0 000000001
Q ss_pred cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecC
Q 001310 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1103)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1103)
...|.+||..+.+.... ......++++..+--.++.-..+|.+.-++.-.. . -++|-.
T Consensus 360 -~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~----------~--~~~~~l 417 (1189)
T KOG2041|consen 360 -QYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN----------R--SRVYFL 417 (1189)
T ss_pred -ceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhc----------c--cceEEE
Confidence 12355677553322111 1123345666666555555555555543310000 0 001100
Q ss_pred CCCCceeeccC--CCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee----------------------------
Q 001310 786 RHGPQFMVNDT--TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------------- 835 (1103)
Q Consensus 786 ~~~~~~~~~~~--~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---------------------------- 835 (1103)
.....+ +....-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 418 -----~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~ 492 (1189)
T KOG2041|consen 418 -----QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRT 492 (1189)
T ss_pred -----eeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhce
Confidence 000000 000011122222334467788888888888887532110
Q ss_pred ----eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 001310 836 ----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911 (1103)
Q Consensus 836 ----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~ 911 (1103)
..++.+...+|.+++.+. ++|.++-..|.|.-|.+.+........ -+..|..+++.-+...+|...--|.+.
T Consensus 493 l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~t 568 (1189)
T KOG2041|consen 493 LEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVT 568 (1189)
T ss_pred eeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceee
Confidence 123455667888888863 699999999999999999877665554 456789999998889999998899999
Q ss_pred EEEcCC---CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCce
Q 001310 912 VWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 968 (1103)
Q Consensus 912 iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~ 968 (1103)
+.|++- |.... .+...+. ..|..+.|..|+..|++- ....++|++-.+.+
T Consensus 569 f~dLd~d~~g~ql~--~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 569 FQDLDYDFDGDQLK--LIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred eeecccccCcceee--eeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 998872 22111 1222221 258899999998777764 55678888765443
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=7.4e-14 Score=143.13 Aligned_cols=274 Identities=18% Similarity=0.174 Sum_probs=212.2
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
..+...+.|+.+|++ ++.|+..|.|-.+|+.++.+..... -...|..+.|-.+.+++|+
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence 347788999999995 6777788999999999998776432 2357889999999999999
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1103)
+ ...-++|||-.+-+ +. .++.| ..|..+.|.|.-- +|++++..|.++--|+.+|+.+..+....+.+..++-
T Consensus 188 A-QK~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 A-QKKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred h-hhceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 8 45569999976532 33 34444 4689999999765 8999999999999999999999999888888888887
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1103)
+|-+ ..+-.|...|+|.+|.....+....+..|.++|.++++.++|+|+++.+. |..+.|||++.-..+.++..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence 6543 58889999999999999999999999999999999999999999999987 56699999998876666655
Q ss_pred ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1103)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 648 (1103)
. .+...+++|..| +++.+....|.||. .-.+. .-..+-.|.-...|..+.|.|-...|-+|...|--.+
T Consensus 334 -p---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 334 -P---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred -C---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 2 356777887655 55556667799994 33322 1111222222246889999998888888777664444
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.4e-12 Score=146.76 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=152.1
Q ss_pred cCCccceeEecccCCcCceEEEecCCCceEEEEEcC--CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
.+......+.+..|...+...+|||||++++.+... +..|.+||+.+++... +..+.+
T Consensus 189 ~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g 248 (433)
T PRK04922 189 ADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRG 248 (433)
T ss_pred ECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCC
Confidence 333445556677777789999999999964444322 3469999998887543 222344
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCCc--eEEEe
Q 001310 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWD 471 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~--i~iwd 471 (1103)
...+++|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .++. |.++|
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVA 322 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEE
Confidence 45678999999988754 4444 6999999887632 34455555678899999994 44444 4444 66777
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
+.+++... +..+.......+|+ ++|..|+..+.++ .|.+||+.++.... +. +........|+|||+.++..+
T Consensus 323 l~~g~~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 323 ASGGSAER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred CCCCCeEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEE
Confidence 77766433 33333334456664 5777887765443 58999988766542 22 222345679999999998877
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
.. .+...|++++... ...+.+..+. +.+...+|+|
T Consensus 398 ~~-~g~~~L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 398 RE-GGRGVLAAVSTDG-RVRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred ec-CCceEEEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence 54 3466799999854 4445554433 4556666765
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.4e-12 Score=145.57 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=157.2
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcccc
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 433 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~ 433 (1103)
.+|.+||...+.... +..|...+.+.+|||||+.|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543221 44577789999999999999988643 46999999887632
Q ss_pred ceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCe
Q 001310 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 510 (1103)
Q Consensus 434 ~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~ 510 (1103)
.+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ +||..|+..+. +|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 23334445568899999995 334555555 599999988875 4455555555566774 57777776664 454
Q ss_pred --EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 511 --i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
|.++++.+++... +..........+|+|||++++..... ++...|++||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 5556665554332 22233344568999999999887642 23457999999888765 3322 1 2234568999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 589 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
||++++..+.+ +.|++++... .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 99998886643 4688888854 4444444332 2356667776
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.50 E-value=2.5e-08 Score=121.39 Aligned_cols=570 Identities=11% Similarity=0.120 Sum_probs=306.3
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEE----ECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
..+.|.++.|-+|.. -++.+..+|.|.+. |..+...-.. ..-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------------------G~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--------------------GSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--------------------EEEcCcEEEEEECCCc
Confidence 346899999999998 46777888999999 6555543322 2245799999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCce---------
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--------- 477 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~--------- 477 (1103)
..||..+.++++.+-+-. -+.+ .-..+.++ |.. ..++.|..+.=.-+.-..|+.
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i-------------~E~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPI-------------SEVPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEE-------------EEeecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 999999999988776422 1111 11111111 000 133333221111111111111
Q ss_pred -----eEEeecCCCceEEEEeeecCCccEEEEEEC---C---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 478 -----TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 478 -----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
...+. +...-..++| .+||.++++.+. . ..+|||+-+ +..........+--.+++|-|.|+++++
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 01112 2333344555 779999988774 3 469999855 4433344433444567899999999998
Q ss_pred EecCCCCceeEEEEeCCCCeeEEEEeccc-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCCCCC
Q 001310 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLP 623 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~ 623 (1103)
.... .....|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+..- .+.+..... .
T Consensus 274 ~q~~-~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~ 349 (928)
T PF04762_consen 274 SQRL-PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-E 349 (928)
T ss_pred EEEc-CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-C
Confidence 8752 3345566676 4454444444321 1236799999999999999877555 99999887653 233333322 2
Q ss_pred CCceEEEecC-CCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310 624 ENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1103)
Q Consensus 624 ~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1103)
.+..+.|+|. ...|.+.+.+|.+..++..-.. ..++.. .|+..-.+
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~v 396 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTV 396 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEE
Confidence 3456999994 4567777777777766543110 000000 01111111
Q ss_pred eeccccccccccccc--cCCc-cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccC
Q 001310 703 SVEAENKSEVEKPLF--ARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779 (1103)
Q Consensus 703 s~~~d~~i~~w~~~~--~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 779 (1103)
..-+..++++-.+.. ..|. ....+. -...|..++|++++..+++...||.+.+|.++...............
T Consensus 397 aVIDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~ 471 (928)
T PF04762_consen 397 AVIDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSS 471 (928)
T ss_pred EEEeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhh
Confidence 111112233322221 1111 112222 34679999999999999999999999999976543211000000000
Q ss_pred CeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC----CeEEEEEcCCce---eeEEecCCCCCeeEEEEc
Q 001310 780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFN 852 (1103)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s 852 (1103)
+.. .. ..... .......+..++|..+..+++.... ..+.+++....+ ...........+..+...
T Consensus 472 ~~~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (928)
T PF04762_consen 472 ISL-----DS-MDISD--SELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSS 543 (928)
T ss_pred ccc-----cc-ccccc--cccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeC
Confidence 000 00 00000 0013456788888888877776653 458888874332 233333344555566666
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCcee-EEEeccCCCCEEEEEEccCC--CEEEEEeCCCeEEEEEcCCCceeeeeeeecC
Q 001310 853 PHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 929 (1103)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~dg--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 929 (1103)
+ +...++.-..+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+++ .. . .+.
T Consensus 544 ~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la-- 611 (928)
T PF04762_consen 544 P-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA-- 611 (928)
T ss_pred C-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe--
Confidence 5 444567777899888766554322 22333222222222222221 14444445554443 21 1 111
Q ss_pred CCcccCCCCceEEEEcCCCCEEE-EEeCCeEEEEECC-CceEEEEeeCCCCcC-eEEEEEccCCCEEEEEecCCcEEEEe
Q 001310 930 DGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus 930 ~~~~~~~~~v~~l~fs~dg~~l~-~~~d~~v~iwd~~-~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
..++++++ .+.+|+ +.....++..++. ....+......+... --.+.--..|..|+++-...+=.|.-
T Consensus 612 -------~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQ 682 (928)
T PF04762_consen 612 -------SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQ 682 (928)
T ss_pred -------cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEE
Confidence 13566666 344554 4577778888887 222111111111000 00122235677888776555566677
Q ss_pred CCCceeE
Q 001310 1007 ASNLEVQ 1013 (1103)
Q Consensus 1007 ~~~~~~~ 1013 (1103)
+.-|.+.
T Consensus 683 mPRGNLE 689 (928)
T PF04762_consen 683 MPRGNLE 689 (928)
T ss_pred cCCCchh
Confidence 7777654
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.1e-12 Score=145.25 Aligned_cols=233 Identities=19% Similarity=0.186 Sum_probs=149.8
Q ss_pred CCccceeEecccCCcCceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1103)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1103)
+......+.+..+.+.+.+.+|||||++++.+...+ ..|.+||+.+|+... +....+.
T Consensus 182 D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~ 241 (427)
T PRK02889 182 DADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGS 241 (427)
T ss_pred CCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCC
Confidence 334445566667778999999999999644443332 459999999887543 2223345
Q ss_pred EEEEEECCCCCEEEE-EeCCCeEEEEEe--cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC--C
Q 001310 399 VNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA--V 473 (1103)
Q Consensus 399 V~~~~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~ 473 (1103)
+.+.+|||||+.|+. .+.++...||.+ .++. .. .+..+...+....|+|||+. ++++...++...||.+ .
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECC
Confidence 668999999999875 566777666655 4433 22 34455556677899999995 2333444566666654 4
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
+++. ..+..+.......+| +++|++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+..
T Consensus 317 ~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 317 GGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec
Confidence 4443 222222223334556 55778888776654 59999998776543322 2234678999999999988764
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
+ +...+++.+. ++...+.+..+. +.+...+|+|
T Consensus 392 ~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp 424 (427)
T PRK02889 392 G-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGP 424 (427)
T ss_pred C-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCC
Confidence 3 3566778777 455555555444 5566667776
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=2e-12 Score=135.29 Aligned_cols=277 Identities=10% Similarity=0.120 Sum_probs=184.0
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE-----CCCCCE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 410 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-----spdg~~ 410 (1103)
.+....++-.|+++.+--+ ..+.+|+...+..+. .++.+..+.+ ....|-+| .|++--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~-------------~pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLS-------------KPIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhc-------------cchhhhcccC--CCCceecccccccCCCCcc
Confidence 4556666777776554333 568888887654332 1222222332 23334444 457788
Q ss_pred EEEEeCCCeEEEEEecCCCccccceEec--cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310 411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1103)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1103)
|+.|-..|.|.+.|....+..+.. ... -....|+|+.|-|.+.. .++.+-.+|.++++|.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~~sklf-ne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLF-NEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhh-hhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 999999999999988663221111 111 12368999999998876 56667779999999851 11111
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEc-CCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLY-DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
+.-++..-+++..+.... |.- .+...+..+......|..++|+|||++||+.+. |++++|+|..+.++
T Consensus 256 t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 111221122222222211 111 111233333334458899999999999999986 78899999999988
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec---------------
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK--------------- 632 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--------------- 632 (1103)
+..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..-.+| ...|..|+|.|
T Consensus 325 lg~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~ 399 (636)
T KOG2394|consen 325 LGVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMD 399 (636)
T ss_pred HHHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeeccccccccccccccccc
Confidence 88887777 88999999999999999999999999999999888776555 56788888872
Q ss_pred --------------------CC-------------CEEEEEECCCeEEEEEcCCCCee
Q 001310 633 --------------------NG-------------TLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 633 --------------------~g-------------~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
++ -.+.+.+.|..+.+||+......
T Consensus 400 ~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 400 STFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred ccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 01 24667788999999999866443
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=1.6e-11 Score=128.18 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=189.5
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
-.-++..++|||.|+ +|++... ..|.+|.-..+..+..+ ....|..+.|||.++||.
T Consensus 31 ~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 31 ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLV 87 (561)
T ss_pred cCcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceee
Confidence 344788999999998 5666544 56999998877655431 225799999999999999
Q ss_pred EEeCCC---------------eEEEEEecCCCccccceEecccccc--EE-EEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 413 VAYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 413 s~~~d~---------------~i~iwd~~~~~~~~~~~~l~~h~~~--v~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
+=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-|.+ +++-. ....++|+++ +
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t 160 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T 160 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence 865433 38999999987655 34444444 44 788998888 44433 2346999997 4
Q ss_pred Ccee-EEeecC-CCceEEEEeeecCCccEEEE-----EECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 475 GSRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 475 ~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
+..- ..+..- ...|....++|..++..|+. .+.++++++|.+.......+.......-..+.|.+.|++|.+-
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence 4322 111111 24566777777666666554 4677889999988666555443333334467888999887653
Q ss_pred ecC-------CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcC
Q 001310 548 GTS-------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 548 ~~~-------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
... --++..++++++.... +....... ++|..++|.|.++.+++ |-.+-.+.++|++.. ....+..
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe 315 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE 315 (561)
T ss_pred EEEeeecccceeccceEEEEeecccc-cceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCC
Confidence 321 1134568888887333 22222334 89999999999888766 457888999999875 3333332
Q ss_pred CCCCCCCceEEEecCCCEEEEEECC---CeEEEEEcCCC
Q 001310 619 GGGLPENPRICFNKNGTLLAVIANE---NRIKILETPES 654 (1103)
Q Consensus 619 ~~~~~~v~~v~~s~~g~~l~~~~~d---g~i~iw~~~~~ 654 (1103)
. .=+.+.|+|.++++++++-| |.+.+|+....
T Consensus 316 ~----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 316 Q----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred c----ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 2 23678999999999997765 66778776543
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.4e-12 Score=143.28 Aligned_cols=223 Identities=14% Similarity=0.102 Sum_probs=146.1
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34577889999999999999987643 469999999886432 3334455678999999995 344667788766
Q ss_pred EEe--CCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEEEEcC--CCCeeEEecCCCccEEEEEEccCCCE
Q 001310 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 469 iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
||. +.++. +..+..+........| ++||+.|+..+. +|...+|.++ ++.... +..........+|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCE
Confidence 665 44443 5556556555566667 457777776554 4666777654 333222 2222333446789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEEcCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1103)
++..+..+ +...|++||+.+++....... .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99776432 345799999998875443322 2235678999999998877544 3555566 455555554332
Q ss_pred CCCCCceEEEec
Q 001310 621 GLPENPRICFNK 632 (1103)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1103)
..+...+|+|
T Consensus 415 --g~~~~p~wsp 424 (427)
T PRK02889 415 --GDVREPSWGP 424 (427)
T ss_pred --CCCCCCccCC
Confidence 2356677776
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=4.2e-11 Score=126.76 Aligned_cols=287 Identities=11% Similarity=0.126 Sum_probs=187.8
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
......++|++|+ ++|.+ .+..+.|++..++..+.+. ....+.++.|||-|.+|.+=
T Consensus 35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe---------------------ccceeeeeeecccccccccc
Confidence 3467889999998 56665 4588999999988644331 12278899999999999863
Q ss_pred -----eCCC-----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 415 -----YSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 415 -----~~d~-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
..++ .+.+|+++++.... .+..-...-++..|+.|.. ++.--..+.+.+|++..-+.+ .-+-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccce-eeeee
Confidence 2222 37799999953222 1222222226899999986 444444567999997763322 22346
Q ss_pred CCceEEEEeeecCCccEEEE-----EECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccCCCEEEEE-ecC--C--
Q 001310 485 GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSC-GTS--K-- 551 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~-~~~--~-- 551 (1103)
...|..+.++|.+.-..+++ .+.-+.+++|.+.......... .-...-..+.|++-|.-|++. +.+ .
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77788888888765556654 3566779999776322211110 011122356788777654432 221 1
Q ss_pred ---CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310 552 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1103)
Q Consensus 552 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1103)
-|+..+++++++.......+.. .++|.++.|+|+++.+++ |-.--.+.|+|++ +..+..+.. .+-+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN 315 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRN 315 (566)
T ss_pred ccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCcc
Confidence 2456788888884333333332 479999999999987665 5677889999985 455555432 2357
Q ss_pred eEEEecCCCEEEEEECC---CeEEEEEcCCCCeeEec
Q 001310 627 RICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 660 (1103)
Q Consensus 627 ~v~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~ 660 (1103)
++-|+|.|++++.++-+ |.|.+||+.+.+.+..+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 89999999999988764 78999999887655444
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=3.9e-10 Score=124.19 Aligned_cols=210 Identities=13% Similarity=0.186 Sum_probs=136.4
Q ss_pred CeeEEEEecCCCEEEEEc--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeeEEEEcCCCCCEEEEEe-CCC
Q 001310 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGM-DDS 866 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~-~dg 866 (1103)
....++++|++++|+++. +|.|.++++.. +..... + ........++.++| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 334577777777777775 57788887765 332221 1 11235678999999 888777754 344
Q ss_pred eEEEEEcCCce--eE--EEec-cCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcC--CCceeeeeeeecCCCcccCCCC
Q 001310 867 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 938 (1103)
Q Consensus 867 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 938 (1103)
.|.+|++.... +. ..+. .....-+.++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999998654 21 2222 2345678999999999886655 57889999998 5555444444443222211125
Q ss_pred ceEEEEcCCCCEEEEE--eCCeEEEEECC--CceE--EEEeeCCCCcCeEEEEEccCCCEEEEEe-cCCcEEEEeC--CC
Q 001310 939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1103)
Q Consensus 939 v~~l~fs~dg~~l~~~--~d~~v~iwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~--~~ 1009 (1103)
...+++||||++|.++ ..+.|.+|+++ +|.. +..+. ........++|+|||++|+++. .++.|.+|++ ++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7889999999999996 56789999993 3333 33322 2244578999999999999887 5578999976 57
Q ss_pred ceeEEe
Q 001310 1010 LEVQCR 1015 (1103)
Q Consensus 1010 ~~~~~~ 1015 (1103)
|.+...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 776543
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=7.3e-12 Score=126.38 Aligned_cols=273 Identities=13% Similarity=0.128 Sum_probs=193.4
Q ss_pred CcCceEEEecCCCceEEEEE-cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
...|+.++|--|++.=+..+ +.|..+.....+....... +||++. ....+.+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 45788888877765433333 3666777777666554432 233221 33345666666654 34667
Q ss_pred EEeCCCeEEEEEecCCCccc-cceEeccccccEEEEEEecCCCceEEEEEcCC--CceEEEeCCCCceeEEeecC-----
Q 001310 413 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~----- 484 (1103)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++.... ++++||.. ..+.|||+++.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998554111 11123223 45666766766664 67779988 88999999998666554322
Q ss_pred ----CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 485 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.-.++++.|.+......+++++.-+.+++||...+.. ...+.....+++++...|+|+.++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1234566676554468999999999999999987654 4477778889999999999999999865 556999
Q ss_pred EeCCCCeeEEE-EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1103)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1103)
+|.+.++.... +.+.. +.++++..+|..++++++|-|..+||+|+.+.+++...-... ..+++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 99999998877 77777 899999999999999999999999999999977765554332 2455665543
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=2e-10 Score=120.06 Aligned_cols=366 Identities=11% Similarity=0.152 Sum_probs=224.8
Q ss_pred EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC
Q 001310 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1103)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1103)
.+|+..+......+....-++..+++||.|.+|++.... .|.+|+...+..+..+.. ..|..+.|+|+++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence 345544444444444456688899999999999987643 399999888776666654 4599999999999
Q ss_pred EEEEEeCCC---------------cEEEEECCCCeeEEEEcCCCCCCCCc-eEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310 592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 655 (1103)
Q Consensus 592 ~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~dg~i~iw~~~~~~ 655 (1103)
+|.+-+..+ .+.+||..+|..+..+.......... -+.|+-+.+++|-.. ...+.|+++...-
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~ 163 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNI 163 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCcc
Confidence 999865433 49999999999999887664432233 788999888877553 3568999862211
Q ss_pred eeEecc-ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccc
Q 001310 656 SVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1103)
Q Consensus 656 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 734 (1103)
....+. .....+....++|.+.. ..+..
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~---------------------- 192 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNH-----------------------------DELAY---------------------- 192 (561)
T ss_pred ccCchhhccccceeeEEecCCCCC-----------------------------ceEEE----------------------
Confidence 110010 11223333333322100 00011
Q ss_pred ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
|.|.. .+..+.+++|.++.++. +.+..+ -...-..+-|.+.|
T Consensus 193 -------~tPEk-----~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g 234 (561)
T COG5354 193 -------WTPEK-----LNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLG 234 (561)
T ss_pred -------Ecccc-----CCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCC
Confidence 11110 12345555555553322 111111 00111234444555
Q ss_pred CEEEEE------------cCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE--EeCCCeEEEEEcCCceeEE
Q 001310 815 AYLFSA------------SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVIS 880 (1103)
Q Consensus 815 ~~l~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd~~~~~~~~ 880 (1103)
++|+.- ++..+.|+++......-. ..-.++|...+|.| .++.+++ |..+-.+.++|+... ...
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecc-cCCceeEEecccccceeecccccc-eEE
Confidence 554432 134588888874433333 25578999999999 5555544 357789999998854 444
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEeCC---CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE---
Q 001310 881 KLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--- 954 (1103)
Q Consensus 881 ~l~~h~~~V~~l~~s~dg~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--- 954 (1103)
.+. ...=..+.|||.+++++.++-| |.|-+||..+.-. ++....+. ..+.+.|||||.++.+.
T Consensus 312 ~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~~~~~~~~-----n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 312 YFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----VAGAFNGL-----NTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ecC--CcccccccccCcccEEEEecCCccccceEEeccCCceE----EEEEeecC-----CceEeeccCCceEEEecCCC
Confidence 333 3344568899999999998876 5699999987432 22222221 24567899999999873
Q ss_pred ----eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310 955 ----HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus 955 ----~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
.|..+.|||+..... . ..+.+.|.|.|++.-+.+.+.
T Consensus 381 ~k~~~Dn~i~l~~v~g~~~-f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 381 EKLRVDNSIKLWDVYGAKV-F--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred cccccCcceEEEEecCchh-h--------hhhhccccCCcccceeeccCC
Confidence 367899999873222 1 456778888888877776654
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.1e-10 Score=122.71 Aligned_cols=327 Identities=13% Similarity=0.181 Sum_probs=204.5
Q ss_pred cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-----------CC
Q 001310 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 599 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~d 599 (1103)
.-+-+.|||.|.||++-...| |.+|--.+-..++.|.. ..|.-+.|||+.++|++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 345689999999999987543 89998776666666654 3588999999999999855 22
Q ss_pred CcEEEEECCCCeeEEEEcCCCC-CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310 600 HVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1103)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 678 (1103)
..++|||+.+|...+.+..... ...-.-+.||.|++++|.-.. ..|.||+...-.++....
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks----------------- 343 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS----------------- 343 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----------------
Confidence 5799999999999988876322 223456789999999998777 468888776432221110
Q ss_pred eeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceE
Q 001310 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1103)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 758 (1103)
+ ....|..+.|+|.++.|+--...
T Consensus 344 ----------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 344 ----------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ----------------------c-------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 0 12335555666665533322111
Q ss_pred EEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE
Q 001310 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 838 (1103)
Q Consensus 759 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~ 838 (1103)
+.. .. ..+.+..+.+++.+++
T Consensus 368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 110 00 1233444444444444
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCcee-EEEeccCCCCEEEEEEccCCCEEEEEeC-
Q 001310 839 IMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG- 906 (1103)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~----------~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~- 906 (1103)
..-+.-.-..|-|.. .|.+|+.-- .=..+.|+.+..... +..+. -...|...+|-|.|..+++.+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence 433333333455555 555665421 112455666654432 22222 4577899999999998887654
Q ss_pred --CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCCeEEEEECCCceEEEEeeCCCCcC
Q 001310 907 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVP 980 (1103)
Q Consensus 907 --dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~~v~iwd~~~~~~~~~~~~~h~~~ 980 (1103)
..++.+|.+++.. .....+..+... ....+.|||.|++++++ ..|.+..+|+.-..+...-...| ..
T Consensus 467 ~~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~ 539 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA 539 (698)
T ss_pred ccccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence 3568889888521 122334444332 35789999999999984 46789999998544333323334 35
Q ss_pred eEEEEEccCCCEEEEEecC------CcEEEEeCCC
Q 001310 981 ISQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1103)
Q Consensus 981 v~~l~fs~dg~~l~t~~~d------g~v~vWd~~~ 1009 (1103)
.+.+.|.|.|+|++|++.- .--++|++..
T Consensus 540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 6778999999999998753 3455666554
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.1e-10 Score=123.56 Aligned_cols=336 Identities=13% Similarity=0.135 Sum_probs=210.2
Q ss_pred CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001310 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 598 (1103)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~----- 598 (1103)
..++...++|++|++++.+. +..+.|++..++..+..... ..+..+.|+|.++++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34577889999999999886 34588999888864333332 258899999999988762 12
Q ss_pred CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1103)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 678 (1103)
.-.+.+|+++++.....+...... -++..|++|..+.+- -..+.+.+|+..+-+.. ..+.+...++.+.++|....
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence 235779999996655555443222 268889988754433 33468999998874322 22345666777777764221
Q ss_pred eeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceE
Q 001310 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1103)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 758 (1103)
. .+++. .....+.-..+++|.............. .--...=..+.|++-|.-|++....
T Consensus 180 ~-------~vAvy--------vPe~kGaPa~vri~~~~~~~~~~~~a~k---sFFkadkvqm~WN~~gt~LLvLast--- 238 (566)
T KOG2315|consen 180 P-------FVAVY--------VPEKKGAPASVRIYKYPEEGQHQPVANK---SFFKADKVQMKWNKLGTALLVLAST--- 238 (566)
T ss_pred c-------eEEEE--------ccCCCCCCcEEEEeccccccccchhhhc---cccccceeEEEeccCCceEEEEEEE---
Confidence 1 11110 0112334456788876522211110000 0011222345677766654433211
Q ss_pred EEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCcee
Q 001310 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKT 835 (1103)
Q Consensus 759 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~ 835 (1103)
|++.... .--...++.+.++....+.. .+ ...++|.++.|+|+++-+++.. -.++.|+|+. +..
T Consensus 239 ---dVDktn~----SYYGEq~Lyll~t~g~s~~V--~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 239 ---DVDKTNA----SYYGEQTLYLLATQGESVSV--PL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred ---eecCCCc----cccccceEEEEEecCceEEE--ec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 0111000 00111234444444222222 22 2578999999999999888776 3789999986 555
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCC---CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeC------
Q 001310 836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------ 906 (1103)
Q Consensus 836 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------ 906 (1103)
+..+ ..++-.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||.+++|+..
T Consensus 306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 5555 466778899999 88888887765 7999999999999988886543 45799999999999875
Q ss_pred CCeEEEEEcCC
Q 001310 907 DAQIFVWDVDG 917 (1103)
Q Consensus 907 dg~I~iwd~~~ 917 (1103)
|..++||+...
T Consensus 381 dNg~KiwhytG 391 (566)
T KOG2315|consen 381 DNGIKIWHYTG 391 (566)
T ss_pred cCCeEEEEecC
Confidence 67799999986
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.3e-11 Score=141.16 Aligned_cols=233 Identities=15% Similarity=0.100 Sum_probs=153.3
Q ss_pred cCCccceeEecccCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
.+......+.+..|...+.+.+|||||++++.+.. .+..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 33345556777888889999999999996544432 24689999999886542 334566
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCC--ceEEEe
Q 001310 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWD 471 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd 471 (1103)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++..+ .++ .|++||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4778888877532 35556666778999999995 44443 333 688889
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
+.+++. ..+..+...+....|+ ++|..|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence 776654 3444344555556664 577788776543 35778887654432 2222 23467789999999998776
Q ss_pred cCCCCc--eeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
...... ..++++|+..+.. +.+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688889876554 33332 2 3355556665
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=1.6e-09 Score=119.30 Aligned_cols=298 Identities=13% Similarity=0.216 Sum_probs=179.2
Q ss_pred ceeEEEEeC--CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--ee--EEEEcCCCCCC
Q 001310 554 ESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----DHVIKIWDMNKV--QL--LTTIDAGGGLP 623 (1103)
Q Consensus 554 ~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~--~~~~~~~~~~~ 623 (1103)
.+-|++|++ .++++...-.... ......++++|++++|++..+ ++.|..|++... ++ +......+ .
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~ 87 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--S 87 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--S
T ss_pred CCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--C
Confidence 345666666 5665543322111 245677889999999999876 578988887763 33 33333222 2
Q ss_pred CCceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310 624 ENPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1103)
....++++|++++|+++.. +|.+.++++.....+....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~----------------------------------------- 126 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV----------------------------------------- 126 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE-----------------------------------------
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee-----------------------------------------
Confidence 3467999999999998874 7889998887532111100
Q ss_pred eeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCee
Q 001310 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1103)
Q Consensus 703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 782 (1103)
.+ +...|. +.+
T Consensus 127 ------------------------------------~~-~~~~g~-----g~~--------------------------- 137 (345)
T PF10282_consen 127 ------------------------------------QT-VRHEGS-----GPN--------------------------- 137 (345)
T ss_dssp ------------------------------------EE-EESEEE-----ESS---------------------------
T ss_pred ------------------------------------ee-cccCCC-----CCc---------------------------
Confidence 00 000000 000
Q ss_pred ecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCce--e--eEEec-CCCCCeeEEEEcCCC
Q 001310 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--T--ILTIM-PPSPTATSLAFNPHD 855 (1103)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~--~--~~~~~-~~~~~i~~l~~s~~d 855 (1103)
. .........++.++|||+++++.. .+.|.+|++.... . ...+. .....-+.++|+| +
T Consensus 138 ----~----------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-d 202 (345)
T PF10282_consen 138 ----P----------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-D 202 (345)
T ss_dssp ----T----------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-T
T ss_pred ----c----------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-C
Confidence 0 001234556788888888888775 4678888887544 2 22232 3446789999999 7
Q ss_pred CCEEEEE-eCCCeEEEEEcC--Cce--eEEEecc----C--CCCEEEEEEccCCCEEEEEe-CCCeEEEEEcC--CCcee
Q 001310 856 NNVIAIG-MDDSTILIYNAR--SSE--VISKLEG----H--SKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQ 921 (1103)
Q Consensus 856 ~~~lasg-~~dg~v~iwd~~--~~~--~~~~l~~----h--~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~--~~~~~ 921 (1103)
++++++. -.+++|.++++. +++ .+..+.. . ......|+++|||++|.++. .++.|.+++++ ++++.
T Consensus 203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT 282 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence 7766555 457789999988 443 2222221 1 12578899999999877655 56789999994 35554
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEEC--CCceEEEEeeCCCCcCeEEEEE
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVPISQATF 986 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~--~~~~~~~~~~~~h~~~v~~l~f 986 (1103)
....+... +. ..+.++|+|+|++|+++ .++.|.+|++ ++|.+...-....-....+|.|
T Consensus 283 ~~~~~~~~-G~-----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 283 LVQTVPTG-GK-----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEES-SS-----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEeCC-CC-----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 44444332 21 36899999999999996 5678888866 5776554321112344556655
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=1.3e-09 Score=115.84 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=156.4
Q ss_pred EecCCcEEEEeec----------CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC---CCCeeEE
Q 001310 742 YNNGGQAIFALAS----------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCF 808 (1103)
Q Consensus 742 ~s~~g~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~l 808 (1103)
+||||+.++++.. +..|.+||.. +.+......++...+ ......+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~----------------------t~~~~~~i~~p~~p~~~~~~~~~~~ 110 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ----------------------THLPIADIELPEGPRFLVGTYPWMT 110 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECc----------------------cCcEEeEEccCCCchhhccCccceE
Confidence 7888887776665 4566666644 444343333322111 2344578
Q ss_pred EEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeE----E
Q 001310 809 ALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI----S 880 (1103)
Q Consensus 809 ~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~----~ 880 (1103)
+++|||+++.+.. +..|.+.|+.+++.+.++.... ...-...++ +. ++ +.+.||......+.+ |+.. .
T Consensus 111 ~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 111 SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEeeee
Confidence 9999999999876 5889999999999999887533 222223332 22 22 223445444433332 2211 1
Q ss_pred EeccCCCCEE-EEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc----CCCCceEEEEcCCCCEEEEE
Q 001310 881 KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLV 954 (1103)
Q Consensus 881 ~l~~h~~~V~-~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~l~~~ 954 (1103)
.+.+...++. .-.|++ ||+++..... |+|.+-|+..........+........ ..+...-++++|||+.+.+.
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence 1111001110 014566 8887776666 999999987655444333333211100 11345559999999998883
Q ss_pred e---C--------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310 955 H---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 955 ~---d--------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
. . +.|.++|+.+++.+..+..+ ..+..++||+|++ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 2 1 57999999999999987764 4899999999999 777666 67889999999999998884
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=6.6e-11 Score=124.99 Aligned_cols=285 Identities=15% Similarity=0.171 Sum_probs=190.8
Q ss_pred cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC-CceEEEEeeecCCccEEEEEECCCeEEEEEcC
Q 001310 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1103)
Q Consensus 439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 517 (1103)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+..--
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46677789999999997 7888888999999998765543 33332 223222221 2232334444556655543211
Q ss_pred CCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe
Q 001310 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1103)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 597 (1103)
. ....... ...-..++++.-..-|++++... .|+-+++..|+.+..+.... +.++++..++....|++|+
T Consensus 125 G--~hy~~RI-P~~GRDm~y~~~scDly~~gsg~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 125 G--RHYRTRI-PKFGRDMKYHKPSCDLYLVGSGS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred C--eeeeeec-CcCCccccccCCCccEEEeecCc----ceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 1 1111111 11223445544333344443322 29999999999999998876 8899999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEEcCCC---------CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec-cccccce
Q 001310 598 DDHVIKIWDMNKVQLLTTIDAGG---------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNL 667 (1103)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i 667 (1103)
.+|.|..||.++...+.++.... ..+.|+++.|+.+|-.+++|+.+|.+.|||+.+.+++..- .+..-+|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 99999999999887776664332 2345899999999999999999999999999988766433 3444556
Q ss_pred eeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc
Q 001310 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1103)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 747 (1103)
..+.|.+. ++.-.+...+...+++||-.++++..... ....+..+++-|++.
T Consensus 275 ~~l~~~~~---------------------~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 275 KKLDWQDT---------------------DQQNKVVSMDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG 326 (703)
T ss_pred eeeccccc---------------------CCCceEEecchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence 66666531 22223333344679999988765543221 345688899999999
Q ss_pred EEEEeecCceEEEeecCC
Q 001310 748 AIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 748 ~l~~~~~dg~i~vw~~~~ 765 (1103)
.++++..++.+..|=++.
T Consensus 327 m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEEecCCCcceeEEccc
Confidence 999998888777766554
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=4.4e-11 Score=118.46 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=108.6
Q ss_pred eEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-ceeEEEecc-CCCCEEEEEEccCCCEEEEE--eCCCeEEE
Q 001310 847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 912 (1103)
Q Consensus 847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--s~dg~I~i 912 (1103)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4578888 6666665332 13455555532 233444432 44579999999999987655 35679999
Q ss_pred EEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe----CCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc
Q 001310 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1103)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1103)
||++... +..... ..+..+.|||+|++|+++. .|.+.+||+.+.+.+... .| ..++.++|||
T Consensus 88 yd~~~~~------i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGKK------IFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EH-SDATDVEWSP 153 (194)
T ss_pred EcCcccE------eEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--cc-CcEEEEEEcC
Confidence 9997322 222221 1467899999999999852 467999999999888763 23 3578999999
Q ss_pred CCCEEEEEec------CCcEEEEeCCCceeEEeec
Q 001310 989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 989 dg~~l~t~~~------dg~v~vWd~~~~~~~~~~~ 1017 (1103)
||+++++++. |..++||++. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998874 7889999985 66665544
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.8e-10 Score=121.30 Aligned_cols=325 Identities=13% Similarity=0.179 Sum_probs=196.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----------Cc
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------KT 466 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----------~~ 466 (1103)
.-+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|. .|..+.|||..+ +|+|-+.. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence 346799999999999987777 9999755433333 33 365 488999999999 78887642 35
Q ss_pred eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
++|||+.+|...+.|.... +....| .-+.||.|++++|.
T Consensus 284 l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFAR 322 (698)
T ss_pred EEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeEE
Confidence 7777777777766654210 111112 12578999999988
Q ss_pred EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeeEEEEcCCCC
Q 001310 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-----DHVIKIWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~ 621 (1103)
... ..|.||+..+-.++. .....-..|....|+|.++.|+.-.. -..+.+-.+.+++.+++...+.-
T Consensus 323 m~~-----~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 323 MTG-----NSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred ecc-----ceEEEEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 764 238899877644332 22222367888999999888776442 23466777777777776654421
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1103)
Q Consensus 622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1103)
.-..+-|-.+|.+|++--+-. ...+ + .+..
T Consensus 395 --sDckLhWQk~gdyLcvkvdR~-------tK~~-~------~g~f---------------------------------- 424 (698)
T KOG2314|consen 395 --SDCKLHWQKSGDYLCVKVDRH-------TKSK-V------KGQF---------------------------------- 424 (698)
T ss_pred --eccEEEeccCCcEEEEEEEee-------cccc-c------cceE----------------------------------
Confidence 123466777888887543210 0000 0 0000
Q ss_pred eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC---ceEEEeecCCCcccccccccccc
Q 001310 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKV 778 (1103)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 778 (1103)
..+.++.+...+ ..... ..-...|..++|-|.|..+++.+.+ .++.+|.+....
T Consensus 425 ------~n~eIfrireKd-Ipve~-----velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------- 481 (698)
T KOG2314|consen 425 ------SNLEIFRIREKD-IPVEV-----VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------- 481 (698)
T ss_pred ------eeEEEEEeeccC-CCcee-----eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------
Confidence 001111111000 00000 1124568889999999988877654 445555543210
Q ss_pred CCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc----CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC
Q 001310 779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH 854 (1103)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 854 (1103)
+...+...+ .....+.+.|+|.|++++.+. .|.+.++|+.-..+..+-.......+.+.|.|
T Consensus 482 ---------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP- 547 (698)
T KOG2314|consen 482 ---------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP- 547 (698)
T ss_pred ---------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-
Confidence 000111111 234567789999999999885 47899999975344333333445678899999
Q ss_pred CCCEEEEEeCCC
Q 001310 855 DNNVIAIGMDDS 866 (1103)
Q Consensus 855 d~~~lasg~~dg 866 (1103)
.|+|+++++.-.
T Consensus 548 tGRYvvT~ss~w 559 (698)
T KOG2314|consen 548 TGRYVVTSSSSW 559 (698)
T ss_pred CCCEEEEeeehh
Confidence 999999988543
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5e-11 Score=118.17 Aligned_cols=338 Identities=14% Similarity=0.200 Sum_probs=203.0
Q ss_pred eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~ 645 (1103)
.++.++|+. ..++....-|..+-+++.+.|.+++||-- +.++.-..+.... ..++.++.+.++...|++|-..|+
T Consensus 16 ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecce
Confidence 455667776 77888778888889999999999999953 4454444443322 246789999999999999999999
Q ss_pred EEEEEcCCC----CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCc
Q 001310 646 IKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1103)
Q Consensus 646 i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~ 721 (1103)
+.-+.+... ...+....|...+..+-++. ...++++.+.|..+. |.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----------------------~~e~V~s~~~dk~~~-~h------- 141 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----------------------THEWVLSTGKDKQFA-WH------- 141 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----------------------CceeEEEeccccceE-EE-------
Confidence 988876532 33334445555555555542 122233333222110 00
Q ss_pred cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC
Q 001310 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801 (1103)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1103)
. +..|+.+ .+.+.
T Consensus 142 -------------------c-~e~~~~l-----g~Y~~------------------------------------------ 154 (404)
T KOG1409|consen 142 -------------------C-TESGNRL-----GGYNF------------------------------------------ 154 (404)
T ss_pred -------------------e-eccCCcc-----cceEe------------------------------------------
Confidence 0 0000000 00000
Q ss_pred CCCeeEEEEecCCCEEEEEc-CCeEEEE--EcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310 802 QEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1103)
....+++.+.-. +...|. .|.|.+- ..+....+.++.+|.+.+++++|.| ..++|.+|..|..+.+||+.-.+-
T Consensus 155 ~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 155 ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcc
Confidence 000000000000 111221 2333222 2334567788999999999999999 889999999999999999986543
Q ss_pred -EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC-------------------------Cc
Q 001310 879 -ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------------------------GV 932 (1103)
Q Consensus 879 -~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-------------------------~~ 932 (1103)
...+.+|.+.|..+..-+--+.|.+++.||.|.+|+.+........-+..-. .|
T Consensus 232 ~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~ 311 (404)
T KOG1409|consen 232 TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHH 311 (404)
T ss_pred eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhh
Confidence 4677889999999998888899999999999999999864432211100000 00
Q ss_pred c-cCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC-------ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEE
Q 001310 933 M-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE-------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus 933 ~-~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~-------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v 1004 (1103)
- .....+...+-|....+...+.+-.+++-|.-. ...++..... ...|+.+.+-.+-..|+|+|.|..|+|
T Consensus 312 crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 312 CRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKI 390 (404)
T ss_pred hhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEE
Confidence 0 000112222223233333334444455544321 1112221112 457899999999899999999999999
Q ss_pred EeCCC
Q 001310 1005 HEASN 1009 (1103)
Q Consensus 1005 Wd~~~ 1009 (1103)
||+.+
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99864
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.3e-09 Score=110.30 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=186.6
Q ss_pred ccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC---ceEEEeecCCCccccccccccccCCeee
Q 001310 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1103)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 783 (1103)
+..|.+|++++........ .........+-++++|+++.|.++..+ |.+..|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 4568888877432221111 112245677889999999999888765 6666666543
Q ss_pred cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eeE
Q 001310 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 848 (1103)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 848 (1103)
.+|.-........ ...+...++++++|++|+++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333222221111 233447899999999999997 58899999865 433221 1123332 788
Q ss_pred EEEcCCCCCEEEEEeCC-CeEEEEEcCCceeEEEec---cCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCC--Ccee
Q 001310 849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 921 (1103)
Q Consensus 849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~--~~~~ 921 (1103)
..+.| ++++|++.+-. -.|.+|++..|++...-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888887532 379999999876432211 23445688999999999877665 89999999988 5655
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe--CCeEEEEECCC--ceEEE-EeeCCCCcCeEEEEEccCCCEEEEE
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEAEE--LTCLK-QWFPISSVPISQATFSCDCRMVFTS 996 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~~v~iwd~~~--~~~~~-~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1103)
..+.+.++........+...+..++||++|.++. ...|.+|.+.. +++.. .....+...-....|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 5555555544444445788999999999999974 34688887753 33221 1233345557889999999999999
Q ss_pred ecC-CcEEEEeCC--CceeE
Q 001310 997 FVD-GTLSIHEAS--NLEVQ 1013 (1103)
Q Consensus 997 ~~d-g~v~vWd~~--~~~~~ 1013 (1103)
.++ ..|.+|..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 865 458888775 55554
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=1.1e-09 Score=116.40 Aligned_cols=270 Identities=15% Similarity=0.135 Sum_probs=170.0
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC----------CCeEEEEEec
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~----------d~~i~iwd~~ 426 (1103)
++|.+.|..+++.+.+... |. .-..+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8999999999887765221 11 11224 9999999988755 6789999999
Q ss_pred CCCccccceEecc-c---cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE
Q 001310 427 GGSDARQQLEIDA-H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1103)
Q Consensus 427 ~~~~~~~~~~l~~-h---~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1103)
+.+.+..+..-.. + ...-..++++|||+.+++.--+.+..|.+.|+.+++.+..+...... . .+ +..+...
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~--vy-~t~e~~~- 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-H--IF-PTANDTF- 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-E--EE-EecCCcc-
Confidence 9876653321000 1 12334789999999533333345889999999999999888642211 1 11 1112112
Q ss_pred EEEECCCeEEEEEcCCCCeeE-----EecCCCccE-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eeEEE
Q 001310 503 FSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKRT 570 (1103)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~~ 570 (1103)
..-+.||......++...... .+.....++ ..-.|++ +|++++... ++.|++.|+... .....
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 233445554444333322211 111100000 0114456 888887765 366999995432 32332
Q ss_pred Eeccc----ccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC-
Q 001310 571 YQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT- 635 (1103)
Q Consensus 571 ~~~~~----~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~- 635 (1103)
+.... ...+....+++++++++++... ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 22111 1123445599999999988843 22579999999999999987642 478999999999
Q ss_pred EEEEEE-CCCeEEEEEcCCCCeeEec
Q 001310 636 LLAVIA-NENRIKILETPESNSVDAA 660 (1103)
Q Consensus 636 ~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1103)
+|++.. .++.|.++|..+++.+..+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999888776
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=8.1e-11 Score=118.98 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=157.9
Q ss_pred CCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCce----eeEEecCCCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcC
Q 001310 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----TILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNAR 874 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~ 874 (1103)
...+|..++. .||.++.+.++|.+.+|..+.+. .+..+. ....+..+.-++.+..++|+|+.. ..+.|||+.
T Consensus 104 ~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 3445555554 36677776678999999988443 222232 224555666666556688889988 899999999
Q ss_pred CceeEEEeccCC---------CCEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310 875 SSEVISKLEGHS---------KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 875 ~~~~~~~l~~h~---------~~V~~l~~s~d--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
..+.+..-+.-. -.++++.|-+. ...||+++.-+.+++||...+. +++..+.-.. .+++++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E---~~is~~~ 254 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE---NPISSTG 254 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc---Ccceeee
Confidence 886554433211 24567889887 7899999999999999999744 2333222222 3799999
Q ss_pred EcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 944 FHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 944 fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.-|+|+++.++ .-+.+..+|++.+..+...+.+-.+.|+++...|..++|+++|-|..|||+|+++.+++...+
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 99999999998 678999999999999888788889999999999999999999999999999999977764444
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.3e-10 Score=129.03 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=146.5
Q ss_pred cceeEecccCCcCceEEEecCCCce--EEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
....+.|..+...+..-+|||||+. ++.+...+ ..|.+.++.+|+.... ....+..
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l--------------------t~~~g~~ 233 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI--------------------LALQGNQ 233 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe--------------------ecCCCCc
Confidence 3444556656667788899999975 33344444 3588888888765432 2233445
Q ss_pred EEEEECCCCCEEEEEeC-CC----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE--eC
Q 001310 400 NRVVWSPDGSLLGVAYS-KH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA 472 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~-d~----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw--d~ 472 (1103)
...+|||||+.||..+. +| .+.+|++.++..-.......++.......+|+|||+. ++++...+|...+| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 56899999999997653 22 3445777653211111122223334567899999995 23333456655555 44
Q ss_pred CC-CceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 473 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
.. +.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence 32 3334555555555666677 4577777766543 368999998876654332 234567789999999988765
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1103)
.. .+...|+++|+.+++......+ . +.+...+|+|-
T Consensus 390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~ 425 (428)
T PRK01029 390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAF 425 (428)
T ss_pred CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCC
Confidence 43 3456799999988876554432 2 34566777764
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.9e-10 Score=131.94 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=145.2
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1103)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+|+... +....+.+..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~ 247 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA 247 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence 334456666777899999999999655554433 368999999886543 2223344557
Q ss_pred EEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCc
Q 001310 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1103)
Q Consensus 402 ~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~ 476 (1103)
.+|||||++|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|+++|+.+++
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999998854 3444 6888899887532 34455556677899999995 233333333 57778888877
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEECC-C--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
... +...........| ++++..++..+.+ + .|.+||+.++........ .......|+|||+.++..+.. .+
T Consensus 323 ~~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g 396 (430)
T PRK00178 323 AER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QG 396 (430)
T ss_pred EEE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CC
Confidence 543 2212222233455 4566777766543 3 477888887665432222 222356899999999887653 33
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
...|++++... ...+.+.... +.+...+|+|
T Consensus 397 ~~~l~~~~~~g-~~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 397 RGVLMLVSING-RVRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred ceEEEEEECCC-CceEECcCCC---CCcCCCccCC
Confidence 56788888754 3334444333 4556666765
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=6.4e-10 Score=125.41 Aligned_cols=228 Identities=12% Similarity=0.086 Sum_probs=141.1
Q ss_pred ccCCCccEEEEEECCCCCEEE---EEeCC--CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC---
Q 001310 392 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--- 463 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~--- 463 (1103)
+......+.+-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|||||+++ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334555677889999998633 33333 358888998875332 33344455678999999953 333322
Q ss_pred -CCceEEEeCCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEE-CCCeEEEEEc--CC-CCeeEEecCCCccEEEE
Q 001310 464 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRM 535 (1103)
Q Consensus 464 -d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~-~~~~~~~~~~~~~i~~~ 535 (1103)
|..+.+|++.++ +.......+.......+| ++||..|+..+ .+|...+|.+ +. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 323455777653 333333233233445566 55777777665 4666555544 32 22233344444566788
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCee
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL 612 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~ 612 (1103)
.|||||+.|+..+.. .+...|++||+.+++......+ . ..+....|+|||+.|+..+. ...|+++|+.+++.
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999999999887653 2356799999998876544332 2 34667889999998876442 35788999988776
Q ss_pred EEEEcCCCCCCCCceEEEecCC
Q 001310 613 LTTIDAGGGLPENPRICFNKNG 634 (1103)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~g 634 (1103)
....... ..+...+|+|-.
T Consensus 408 ~~Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 408 RKIVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred EEeecCC---CcccCceecCCC
Confidence 5544332 235667888743
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=6.3e-09 Score=105.45 Aligned_cols=250 Identities=13% Similarity=0.192 Sum_probs=171.5
Q ss_pred CCCCeeEEEEecCCCEEEEEc----CCeEEEEEcCC--ceee--EEecCCCCCeeEEEEcCCCCCEEEEEeC-CCeEEEE
Q 001310 801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY 871 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~v~iw 871 (1103)
....++-++++|+++.|.++. +|.|.-|.+.. |+.. ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 667788999999999888874 36788887764 4432 22222334448899999 8888888765 4799999
Q ss_pred EcCC-ceeE--EEeccCCCC----------EEEEEEccCCCEEEEEe--CCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310 872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1103)
Q Consensus 872 d~~~-~~~~--~~l~~h~~~----------V~~l~~s~dg~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1103)
-+.. |.+. ..+..|.+. +....|.|++++|++.+ .|+ |.+|+++.|.+..........|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 4322 122235555 88899999999999875 454 9999999888666544444333
Q ss_pred CCceEEEEcCCCCEEEEE--eCCeEEEEECCCc-eEEEEee------CCC--CcCeEEEEEccCCCEEEEEec-CCcEEE
Q 001310 937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWF------PIS--SVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1103)
Q Consensus 937 ~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~-~~~~~~~------~~h--~~~v~~l~fs~dg~~l~t~~~-dg~v~v 1004 (1103)
...+.+.|+|++++..+. -+++|.+|..+.. ..+..+. ... ......|..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 367999999999998774 6799999999873 2222211 111 456678999999999998752 346888
Q ss_pred EeCCC--ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-cEEEEccCCCCCC
Q 001310 1005 HEASN--LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDT 1077 (1103)
Q Consensus 1005 Wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~vw~~~~~~~~ 1077 (1103)
|.+.. +++. ... +.+ .....+..+.++|. +++|+++..++ .|.++.+....+.
T Consensus 271 f~V~~~~g~L~-~~~---~~~---------------teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 271 FSVDPDGGKLE-LVG---ITP---------------TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEEcCCCCEEE-EEE---Eec---------------cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCce
Confidence 87754 3322 111 111 11244567888888 66666666554 7999998766665
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.6e-10 Score=131.57 Aligned_cols=230 Identities=14% Similarity=0.095 Sum_probs=142.5
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1103)
....+.+..+...+....|||||++++.+...++ .|.+||+.+++.... ....+....
T Consensus 207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~ 266 (448)
T PRK04792 207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGA 266 (448)
T ss_pred CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCC
Confidence 3334556666778999999999996555544333 588899988865321 111223346
Q ss_pred EEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCc
Q 001310 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1103)
Q Consensus 402 ~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~ 476 (1103)
.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999988764 4555 4788888876532 34445556678899999995 333443344 46677887776
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEEC-CCe--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
... +..........+| ++||.+|+..+. ++. |.++|+.++..... ... .......|+|||+.++..... .+
T Consensus 342 ~~~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g 415 (448)
T PRK04792 342 VSR-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QG 415 (448)
T ss_pred EEE-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CC
Confidence 543 2222222333456 456677766554 443 45567766654332 211 122345899999999887653 34
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
...+++++. +|...+.+..+. +.+...+|+|
T Consensus 416 ~~~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 416 KQVLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred ceEEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 566888887 555556665544 4566667776
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=4.7e-10 Score=111.27 Aligned_cols=170 Identities=14% Similarity=0.194 Sum_probs=105.2
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ee--EEEeccC-----CCCEEEEEEccC-CCEEEEEeCCCeEEE
Q 001310 842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV--ISKLEGH-----SKRVTGLVFSDA-LNILVSSGGDAQIFV 912 (1103)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~--~~~l~~h-----~~~V~~l~~s~d-g~~l~s~s~dg~I~i 912 (1103)
|.-.|.++.++. |+..+.+++ |=.|-+|++.-- +. +-.++.| +.-|++..|+|. .++++..+.-|+|++
T Consensus 163 HtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 555667777776 555555444 556667766521 11 1112222 235667777774 356666777777777
Q ss_pred EEcCCCce--eeeeeeecCCCcccC------CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCC-------
Q 001310 913 WDVDGWGI--QTCRSLQTPDGVMTL------APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS------- 977 (1103)
Q Consensus 913 wd~~~~~~--~~~~~~~~~~~~~~~------~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h------- 977 (1103)
-|+....+ ...+....+...... -..|..+.||++|+++++-.--+|++||+...........-|
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHH
Confidence 77763211 011112222111110 146889999999999999777899999995433332223333
Q ss_pred -----CcCe---EEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310 978 -----SVPI---SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 978 -----~~~v---~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
+..| ..++||.++.+++||+....++++++..|...
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 3333 55899999999999999999999998877543
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=7e-10 Score=110.07 Aligned_cols=357 Identities=13% Similarity=0.190 Sum_probs=211.4
Q ss_pred cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-----eeEEeecCC------------CceEEEEeeecCCccEEE
Q 001310 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 503 (1103)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~ 503 (1103)
..-|.++.|...|. +|++|..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999743322 123344443 357778888888888889
Q ss_pred EEECCCeEEEEEcCCCCeeEE-----ecCCCccEEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310 504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1103)
Q Consensus 504 s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1103)
..+.|.+|++|.+........ .......++++.. .+....+. ..+.+.+..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-- 161 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-- 161 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence 999999999998876544331 1111112222211 11111110 112223322
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCC-----CCCCCceEEEecC-CCEEEEEECCCeEEE
Q 001310 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGG-----GLPENPRICFNKN-GTLLAVIANENRIKI 648 (1103)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~~-g~~l~~~~~dg~i~i 648 (1103)
.|...|+++.++.|+..++++. |=.|.+|+++--. ......... -..-|++..|+|. .+.++..+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 2347899999999998888765 6779999987422 222221111 0123678889984 567888888999999
Q ss_pred EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1103)
Q Consensus 649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1103)
-|+.....-. ..-+++...
T Consensus 241 cDmR~~aLCd-------------------------------------------------~hsKlfEep------------ 259 (433)
T KOG1354|consen 241 CDMRQSALCD-------------------------------------------------AHSKLFEEP------------ 259 (433)
T ss_pred eechhhhhhc-------------------------------------------------chhhhhccc------------
Confidence 9987431110 000011000
Q ss_pred cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEE
Q 001310 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1103)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 808 (1103)
. .|..+.+ + .+....|..+
T Consensus 260 -e------------dp~~rsf----------------------------------------------f--seiIsSISDv 278 (433)
T KOG1354|consen 260 -E------------DPSSRSF----------------------------------------------F--SEIISSISDV 278 (433)
T ss_pred -c------------CCcchhh----------------------------------------------H--HHHhhhhhce
Confidence 0 0000000 0 0134567778
Q ss_pred EEecCCCEEEEEcCCeEEEEEcC-CceeeEEecCCC------------CCe---eEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310 809 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 809 ~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1103)
.|+++|+++++-+--+|++||+. ..+.+.+++-|. ..| ..++|+- ++.++++|+....+++++
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 88888888888877888899884 444555544332 122 4578988 788999999999999999
Q ss_pred cCCceeE-EEeccCCCC--EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 873 ~~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
+..|... .++.+.... ...+ ..-+.+.+++......+|-.. .. ....+...+|+|..+
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ld----f~kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LD----FRKKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hh----hhhHHHhhccCCccc
Confidence 8776532 333322221 1111 112334444444332222110 00 001467789999999
Q ss_pred EEEEEeCCeEEEEE
Q 001310 950 RFLLVHETHLAIYE 963 (1103)
Q Consensus 950 ~l~~~~d~~v~iwd 963 (1103)
.+|++.-+.++||.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998777888763
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=8.7e-10 Score=125.51 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=141.0
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1103)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 33466788999999999999987543 268899998875321 2222233457899999995 3344556664
Q ss_pred eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCe--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
|+++|+.+++. ..+..+.......+|+ +|+..|+..+. ++. |.++|+.+++.... ..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCE
Confidence 78889887764 3444455555666775 46666665543 444 55566666554332 222223345789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeeEEEEcCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~ 620 (1103)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+.+ + .+++++. +|.....+..+.
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234568889998886533 22211 11234799999998876543 3 3777786 455555555432
Q ss_pred CCCCCceEEEec
Q 001310 621 GLPENPRICFNK 632 (1103)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1103)
..+...+|+|
T Consensus 437 --g~~~~p~Wsp 446 (448)
T PRK04792 437 --GEVKSPAWSP 446 (448)
T ss_pred --CCcCCCccCC
Confidence 2356677776
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=5.6e-11 Score=117.86 Aligned_cols=358 Identities=14% Similarity=0.137 Sum_probs=228.5
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE--EecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
..++.++||.+.|++....+..+ -+++.+.|.++++|--.+..... .......+++++.+.++.+.|+++-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999998887766554 59999999999999654443332 22334557899999999999998876
Q ss_pred ceeEEEEeC----CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
.+.+.-+.+ +.....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..++.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 334555543 3445556666666 8899999998889999999988876545555555443322211 11222
Q ss_pred EecCCCEEEEEECCCeEEEEEcC--CCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
+.-. +..+|...|.+.+..+. .-..+..+.+|...+.++.+. +....+.++..|
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d 218 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD 218 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence 2211 56667677777776554 346788899999999999997 567778999999
Q ss_pred cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccc-----ccCCee
Q 001310 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRL 782 (1103)
Q Consensus 708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~ 782 (1103)
..+.+||+......... ..+|...|..+...+--+.+++++.||.|.+|+++............ ...+..
T Consensus 219 ~~vi~wdigg~~g~~~e-----l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYE-----LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred CceEEEeccCCcceeee-----eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 99999998754433332 24588889988888888999999999999999998754422222111 122333
Q ss_pred ecCCCCCceeeccCCCC--C-CCCCeeEEEEecCCCEEEEEcCCeEEEEEcC-------CceeeEEecCCCCCeeEEEEc
Q 001310 783 YQPRHGPQFMVNDTTDS--N-SQEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN 852 (1103)
Q Consensus 783 ~~~~~~~~~~~~~~~~~--~-~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 852 (1103)
|+....-......+... . -.+.+...+-+....+...+..-.+++.|.- +...+..+......|+++.+.
T Consensus 294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq 373 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ 373 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence 33221110000001000 0 0112222222222222333333345555432 112233443444689999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Q 001310 853 PHDNNVIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~ 875 (1103)
. ...+|++++.|..|+|||+..
T Consensus 374 e-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 E-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred h-hccceeecCCceEEEEEechh
Confidence 8 777999999999999999874
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.1e-09 Score=125.58 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=142.1
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--c
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 466 (1103)
+..+...+...+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 33467789999999999999887643 369999998875322 2233344567899999995 333555555 5
Q ss_pred eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
|++||+.+++.. .+..+........|+ +|+..++..+. +| .|.++++.+++..... ..........|+|||+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence 888898887654 455555555556664 46666665553 33 4667777666543322 22233345789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~ 620 (1103)
++...... +...|++||+.+++....... . ......|+|+|+.++..+.+ ..+++++... .....+..+.
T Consensus 345 i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ 417 (430)
T ss_pred EEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence 98876532 345699999998865333222 1 12245799999999886643 3477777754 3333444322
Q ss_pred CCCCCceEEEec
Q 001310 621 GLPENPRICFNK 632 (1103)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1103)
..+...+|+|
T Consensus 418 --g~~~~p~ws~ 427 (430)
T PRK00178 418 --GEVREPSWSP 427 (430)
T ss_pred --CCcCCCccCC
Confidence 2355667776
No 269
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=3.6e-10 Score=111.96 Aligned_cols=163 Identities=18% Similarity=0.328 Sum_probs=114.2
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310 400 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1103)
..+.|+|+|++|+.-.. -+...+|.++..........+ ...++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45889999999886543 134666766443322221122 2345799999999999766666777889999
Q ss_pred EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
||++ ++.+..+. ...+..+.|+| +|+++++++.+ |.|.+||.++.+...... ...+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 66666664 56778888854 77899988744 679999999666655543 335789999999999998
Q ss_pred EecC--CCCceeEEEEeCCCCeeEEEE
Q 001310 547 CGTS--KEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 547 ~~~~--~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
+... ...++.+.||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8753 1235668899974 5555443
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=8.4e-10 Score=126.79 Aligned_cols=210 Identities=15% Similarity=0.090 Sum_probs=138.5
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--c
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 466 (1103)
+..+...+...+|||||++||.+..+ ..|++||+.+++.. .+..+...+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 33466778999999999999988644 47999999987532 23345566778999999985 334455444 5
Q ss_pred eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
|++||+.++... .+..+........|+ +++..|+..+. ++ .|.++++.+++.. .+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 888998877643 344444444455664 47777776654 33 5777777765533 33334456677899999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEEc
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 617 (1103)
++.+.... +...|++||+.++... .+.... ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99887543 3457999999886543 232211 234457999999998877554 35555543 44444444
No 271
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=3.9e-10 Score=129.49 Aligned_cols=216 Identities=19% Similarity=0.153 Sum_probs=140.7
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1103)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+.+.+.+
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 344466667777899999999999654443332 479999999886543 2234556777
Q ss_pred EEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCC--ceEEEeCCCC
Q 001310 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 475 (1103)
Q Consensus 402 ~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~ 475 (1103)
++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. |+..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 3333 5888998876432 23445455567799999994 44333 333 5888888776
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
+. ..+..+...+....|+ +++.+++.++.++ .|.+||+.++...... .. .......|+|||+.|+.....+
T Consensus 313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeCC-
Confidence 64 3444455556666664 4677888887775 7888888775443322 11 2234568999999998877643
Q ss_pred CceeEEEEeCCCCeeEEEEe
Q 001310 553 GESFLVEWNESEGAIKRTYQ 572 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~ 572 (1103)
+...+++.+.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 34556776643 44444443
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.9e-09 Score=115.57 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=148.1
Q ss_pred cCCCEEEEEc-CCeEEEEEcCCceeeEEecCC---CCCeeEEEE------cC-------------CCCCEEEEEeCCCeE
Q 001310 812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI 868 (1103)
Q Consensus 812 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v 868 (1103)
|-..++|... ||.+++|+...++....+.+. .+..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 899999999999888877532 123333333 12 155688889999999
Q ss_pred EEEEcCCceeEEEec--cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC
Q 001310 869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1103)
Q Consensus 869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 946 (1103)
.+|++..|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+...+. .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888886 499999999999999999999999999999999855 3333333332 588999999
Q ss_pred CCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccC-----CCEEE-EEecCCcEEEEeCCC
Q 001310 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVF-TSFVDGTLSIHEASN 1009 (1103)
Q Consensus 947 dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~-t~~~dg~v~vWd~~~ 1009 (1103)
||+.|+++ .++|.+||+++++.+.. +.||.++|..+.|..+ |.+++ +...+.-+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 36899999999999988 8899999999999987 66655 444566788887765
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=117.43 Aligned_cols=194 Identities=13% Similarity=0.185 Sum_probs=154.3
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEe------c------------CCCceEEEEEcCCCc
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s------~------------d~~~~~l~s~~~d~~ 466 (1103)
.|-+.|+|....||.++||+...++....+.....-.+.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999887544332222233344444442 1 122237888999999
Q ss_pred eEEEeCCCCceeEEee--cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1103)
|.+++...|+....+. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 689999998874 344689999999999999999988888999888899999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-----CCEEEE-EeCCCcEEEEECCC
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 609 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~ 609 (1103)
++++. .|.+||+++++.+..|.||. ++|++++|..+ |.++++ ...+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98854 59999999999999999999 99999999877 677776 34556677776554
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=4.2e-08 Score=110.58 Aligned_cols=207 Identities=10% Similarity=0.081 Sum_probs=124.8
Q ss_pred cCCeEEEEEcCCceeeEEecCCCCCe-----eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC----C---
Q 001310 821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 888 (1103)
Q Consensus 821 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~--- 888 (1103)
.++.+..||..+|+.+.+........ .+..+. ++ .++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 35667777777776665554322111 111222 33 677788899999999999987655431100 0
Q ss_pred ---E-EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEE
Q 001310 889 ---V-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 963 (1103)
Q Consensus 889 ---V-~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd 963 (1103)
+ ....+ .+..+..++.+|.+..||..+|+..-... . . ...... .++..+.+ ..++.++.+|
T Consensus 230 ~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~-~-------~~~~p~--~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 230 LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD--A-S-------SYQGPA--VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec--c-C-------CccCce--EeCCEEEEECCCCeEEEEE
Confidence 0 01111 34577778889999999999987544221 1 1 111222 23455555 5789999999
Q ss_pred CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCcee
Q 001310 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVY 1043 (1103)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1043 (1103)
..+|+.+............+... .+..|++++.+|.|+++|..+|+.+.++.... ..+.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~-------------------~~~~ 354 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG-------------------SGIA 354 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-------------------Cccc
Confidence 99998876532111122222222 46688889999999999999999988776211 1111
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEE
Q 001310 1044 PHAIAAHPLKPTQFAVGLTNGEVYVI 1069 (1103)
Q Consensus 1044 ~~~~~~~p~~~~~l~~~~~dg~v~vw 1069 (1103)
..- ... ++.|+.++.||.|+.|
T Consensus 355 ~sp-~~~---~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 355 SPP-VVV---GDGLLVQTRDGDLYAF 376 (377)
T ss_pred cCC-EEE---CCEEEEEeCCceEEEe
Confidence 100 111 4568889999999876
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=3.8e-08 Score=110.96 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=112.7
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1103)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999998776544332222222 446788889999999999999888776654432221122
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
+ .+..++.+.. ++.++.||..+|+.+-.+.... ..+ ...... +..++.+..+|.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555543 5679999999999877665432 111 111111 2467788889999999999998
Q ss_pred eEEEEcCCCCC--CC------C-ceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 612 LLTTIDAGGGL--PE------N-PRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 612 ~~~~~~~~~~~--~~------v-~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
.+......... .. + ....+ .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC
Confidence 77654321110 00 0 01111 2445666666777777776655
No 276
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.18 E-value=1.4e-10 Score=110.94 Aligned_cols=169 Identities=21% Similarity=0.261 Sum_probs=122.5
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCCC--cCCcccccc
Q 001310 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTK 71 (1103)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~ 71 (1103)
..++|+-|||+.||-..||.++|+.+..|+||..+ -...|.+|..|+-++|+..+.++-+ ++.+ + .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-h
Confidence 45789999999999999999999999999999772 3677999999999999999988632 2322 2 2
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhc-cccccCCChHHHHHHHHHHHH
Q 001310 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL-LSKYYGDALSARKNMMLELKQ 150 (1103)
Q Consensus 72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~-~~~~~~~~~~~r~~l~~~l~~ 150 (1103)
+.|.+.+|+++|++..+...+|++|+|++|.|+...++..++.|...|..--++.... ...| --....|.++..+++.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999878777777777665533321111 0000 0013346666666666
Q ss_pred hhhcCccccccccCCCcchHHHHHHHHHHHHHH
Q 001310 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 183 (1103)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q 183 (1103)
.|-...- .. -..+|..||+.-+..|
T Consensus 180 aiL~~~~---~~-----~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 180 AILASQE---HE-----SEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHhc---cc-----ccchHHHHHHHHHHHH
Confidence 5543111 11 1447888885555555
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=5.1e-09 Score=102.10 Aligned_cols=251 Identities=15% Similarity=0.122 Sum_probs=162.8
Q ss_pred CceEEEec---CCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc---cEEEEEECCCCC
Q 001310 336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1103)
Q Consensus 336 ~V~~v~~s---pdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~ 409 (1103)
.+..+.|. .+|...++-+..+|.|.++.....+.... ++ + +..-.- .--++.|++.|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeeccCc
Confidence 66677775 24554566777788888887654332211 00 0 111111 244788999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCceeEE-eecCCCc
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~ 487 (1103)
.++++..+|.+.+-+..... +.....+++|....+-++|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999998855544432 3333367899999999999877665 89999999999999998 4455544 5678999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC--CEEEEEecCCCCceeEEEEeCCCC
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
|.+|.-++. .+.+|++|+.|-.|++||.++......-....+.|..+..+|.- +.|+++-.++ ..+.+.+.+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999987654 66899999999999999999766655555556789999999853 3444444322 444444432
Q ss_pred --eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001310 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 610 (1103)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 610 (1103)
+....+..+..|..-...-.|......+++++ .|+.++ +|-.-++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 21122222222224555555543344566654 555544 6654443
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=2e-07 Score=116.12 Aligned_cols=260 Identities=12% Similarity=0.082 Sum_probs=162.1
Q ss_pred EEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCE
Q 001310 738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1103)
Q Consensus 738 ~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 816 (1103)
..++++++ +..+++-..++.|.+++.........+.... .....|. +. .+.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45778875 5555555667888888865321100000000 0000010 00 012344678999999887
Q ss_pred EEEEc--CCeEEEEEcCCceeeEEecCC-----------------CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310 817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1103)
Q Consensus 817 l~~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1103)
|.++. .+.|+++|..++. +.++.+. -..-..++++|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 66665 4779999987654 3333210 11336799999666777777888999999998765
Q ss_pred eEEEecc---------C------CCCEEEEEEccCCCE-EEEEeCCCeEEEEEcCCCceeeeee--------eecC---C
Q 001310 878 VISKLEG---------H------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTP---D 930 (1103)
Q Consensus 878 ~~~~l~~---------h------~~~V~~l~~s~dg~~-l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~ 930 (1103)
.. .+.+ + -.....++++|||+. +++-+.++.|++||+.++......- +... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 2211 1 123467999999984 4555667899999998765321100 0000 0
Q ss_pred Cc--ccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCC------------CCcCeEEEEEccCCCEEEE
Q 001310 931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 995 (1103)
Q Consensus 931 ~~--~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 995 (1103)
+. .........++|+++|+++++ ..+++|++||..++......-.+ +-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113568999999987776 47889999999887665332111 1235678999999998888
Q ss_pred EecCCcEEEEeCCCcee
Q 001310 996 SFVDGTLSIHEASNLEV 1012 (1103)
Q Consensus 996 ~~~dg~v~vWd~~~~~~ 1012 (1103)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.6e-07 Score=115.20 Aligned_cols=256 Identities=11% Similarity=0.073 Sum_probs=159.9
Q ss_pred eEEEEecCCC-EEEEEc-CCeEEEEEcCCceeeEEecC--C------------CCCeeEEEEcCCCCCEEEEEe-CCCeE
Q 001310 806 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 868 (1103)
Q Consensus 806 ~~l~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 868 (1103)
..+++++++. ++++-. ++.|+++|.. +..+..+.. . -.....+++++ ++..|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4678887644 444444 5889999986 444444332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeEEEeccC-----------------CCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeee---ee
Q 001310 869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 927 (1103)
Q Consensus 869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~ 927 (1103)
+++|+.++. +.++.+- -..-..++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999988765 3333210 11246799999 56677777888999999998865432100 00
Q ss_pred cCCCcc---cCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEEee------------CC--------CCcCeE
Q 001310 928 TPDGVM---TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------PI--------SSVPIS 982 (1103)
Q Consensus 928 ~~~~~~---~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~------------~~--------h~~~v~ 982 (1103)
...+.. ........++|+|||+.|.++ .++.|++||+.++......- .. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 011246789999999866664 67899999998765321100 00 011235
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccc-cCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEe
Q 001310 983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGL 1061 (1103)
Q Consensus 983 ~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1061 (1103)
+++|++||..+++-+.+++|++||..++........... ...+... .+.--.+..++++|+ |+++++-+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~---------~a~l~~P~GIavd~d-G~lyVaDt 877 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL---------KAQLSEPAGLALGEN-GRLFVADT 877 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc---------ccccCCceEEEEeCC-CCEEEEEC
Confidence 889999999888888899999999998876543321100 0000000 000013457788887 78999989
Q ss_pred cCCcEEEEccCCC
Q 001310 1062 TNGEVYVIEPNEP 1074 (1103)
Q Consensus 1062 ~dg~v~vw~~~~~ 1074 (1103)
.++.|++|++...
T Consensus 878 ~Nn~Irvid~~~~ 890 (1057)
T PLN02919 878 NNSLIRYLDLNKG 890 (1057)
T ss_pred CCCEEEEEECCCC
Confidence 9999999998554
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=7.9e-08 Score=107.61 Aligned_cols=208 Identities=14% Similarity=0.022 Sum_probs=130.2
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcC---CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1103)
....+.+.... .+....|||||+++++..+. +..|.++|+.+|+... +....+.+.
T Consensus 178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~ 236 (419)
T PRK04043 178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLV 236 (419)
T ss_pred CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEE
Confidence 33344444433 77889999999864443332 3579999998887553 222445566
Q ss_pred EEEECCCCCEEEEEeC---CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCC
Q 001310 401 RVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG 475 (1103)
Q Consensus 401 ~~~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~ 475 (1103)
..+|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+. ..+ .|.+.|+.+|
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g 311 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSG 311 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCC
Confidence 7889999998876532 34688888887752 2 23333333345689999997444432 233 6888898888
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECC---------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
+..+.... ... ...| +++|..|+..+.. ..|.+.|++++.... +... .......|+|||+.++.
T Consensus 312 ~~~rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 312 SVEQVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMF 384 (419)
T ss_pred CeEeCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEE
Confidence 76443321 111 1245 5577777766543 257777887765433 2222 23335889999999988
Q ss_pred EecCCCCceeEEEEeCCCC
Q 001310 547 CGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~ 565 (1103)
.... .+...+.+.++...
T Consensus 385 ~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 385 IKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred EEcc-CCcEEEEEEecCCC
Confidence 7654 33556788887543
No 281
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.99 E-value=0.0002 Score=82.50 Aligned_cols=581 Identities=10% Similarity=0.070 Sum_probs=284.4
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 407 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---- 407 (1103)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-..... ....++. + ..-++|..+..-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhhh--c-ccccceeeEEEEeccccC
Confidence 444455677777887 578888866555555544322210 0000111 1 12346776665432
Q ss_pred CCEEEEEe---CCCeEEEEEecCCCccccceEeccccccEEEEE--EecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-...++++-. + .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence 34566654 578999886544322222224455 34567776 44433321333322 2 23444433221111122
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+.......+..+.. +++.|+-.. ...||+++-. .....+.... .++....+.+...++.++. .+.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22233333333222 122222221 2345555433 2222333333 3333444445555555543 233555566
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCeeEEEEcCCCCC--CCCceEEEecC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGGL--PENPRICFNKN 633 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~--~~v~~v~~s~~ 633 (1103)
..+......+.. -...|.|+.++|-+ +.++.|..+..+.+. -..+...+......... ..|....+-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 555522222211 23679999998752 256677766555443 33344433333222111 12344455567
Q ss_pred CCEEEEEECCCeEEEEEcC--CCCeeEecc--cccccee----------eeEEecCCceeeeeccCCceEecCCC-----
Q 001310 634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLR----------KLSVNPISTVTGAGIANGSVSVNEDP----- 694 (1103)
Q Consensus 634 g~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~i~----------~~~~~~~~~~~~~~~~~~~~~~~~~~----- 694 (1103)
..+|.++..||.+.-+-+. ++..-...+ -...++. .+-...+...+ .-..++...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v-iY~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV-IYSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE-EEecCCcEEEeccchHHhh
Confidence 8899999999998776554 332211110 0111111 11111111111 11112222221110
Q ss_pred ------CCC-CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310 695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1103)
Q Consensus 695 ------s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~ 767 (1103)
++. +..++++ ..+.+++..++.-.....+.+ | -....+.+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------ 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------ 741 (1096)
T ss_pred hhcccccccCCceEEEe-cCCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence 111 1122222 224455544443222222222 1 12344566666644444444433211100
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC-CCEEEEEc-----------CCeEEEEEcCCcee
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT 835 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-~~~l~~~~-----------dg~i~iwd~~~~~~ 835 (1103)
..+......-++++|..+-+.+....+...+....+.+..|..| +.++++|. .|.|.++....++.
T Consensus 742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 00111112235667776666555544433223334444557777 77888773 26789998887444
Q ss_pred eEEecCC--CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310 836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1103)
Q Consensus 836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw 913 (1103)
++....+ .+.+.++..- +|++||. -+..|++|+..+.+.++.-..|..++..+...-.|..++.|.--+.+.+-
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 4443322 2344444432 5667663 45689999999987777777788999999999999999999988877766
Q ss_pred EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001310 914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1103)
Q Consensus 914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~ 965 (1103)
-....+- ......+... +.+++++.+-.+..++.+-.+|.+++...+
T Consensus 896 ~y~~~eg---~f~evArD~~--p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 896 QYKGDEG---NFEEVARDYN--PNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEeccCC---ceEEeehhhC--ccceeeEEEecCceEEeecccccEEEEEec
Confidence 5554321 1111222111 147889999888888888777777766554
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.98 E-value=2.1e-07 Score=91.67 Aligned_cols=208 Identities=18% Similarity=0.165 Sum_probs=139.9
Q ss_pred EEEecCCCEEEEEcCCeEEEEEcCCc--eeeE---EecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 808 FALSKNDAYLFSASGGVISLYIVMTF--KTIL---TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 808 l~~s~d~~~l~~~~dg~i~iwd~~~~--~~~~---~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
++.+.||++||+..|..|.|-..... ..+. ..+.....=+.++||| |+.+||.+...|+|+++|+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 57789999999999988888766532 1112 2233445668899999 99999999999999999998543 3333
Q ss_pred cc-------CCCCEEEEEEccCC------CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 883 ~~-------h~~~V~~l~~s~dg------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
.. -...|..|.|-+-. ..|.....+|.++-+-+..+....-.....+.-.......|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 23567777775432 246666778888877764432111111111111111224799999999999
Q ss_pred EEEEEe-----CC-------eEEEEECCCceEEEE-------------------------ee---CCCCcCeEEEEEccC
Q 001310 950 RFLLVH-----ET-------HLAIYEAEELTCLKQ-------------------------WF---PISSVPISQATFSCD 989 (1103)
Q Consensus 950 ~l~~~~-----d~-------~v~iwd~~~~~~~~~-------------------------~~---~~h~~~v~~l~fs~d 989 (1103)
+|++|+ ++ -+.-|.+-++..-.. ++ ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 998841 11 366776643221100 00 112678899999999
Q ss_pred CCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 990 g~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
|+.||+...+|.|.+|++.+..+.+.+.
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999988877
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.5e-09 Score=112.22 Aligned_cols=243 Identities=14% Similarity=0.221 Sum_probs=169.3
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC-Cccc---cceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
+.||...|.+++--.+.+-+++++.|++|++|.++.. ..+. .+.++..|..+|.++.|-.+.+ .++++ ||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 7899999999988888889999999999999999742 2222 3457789999999999999987 56654 8899
Q ss_pred EEEeCCCCceeEEeec--CCCceEEEEeeecCCccEEEEE-ECCCeEEEEEcCCCCeeEEec-----CCCccEEEEEEcc
Q 001310 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1103)
Q Consensus 468 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~s~ 539 (1103)
.+||.--|+.+..+.. ..+.+..+...++-+...++.+ +...+|+++|.+..+-...++ +....+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988888764421 1122222222233344555555 788999999988776554443 3345688999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEE-EECCCCeeEEEEcC
Q 001310 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 618 (1103)
.|+.++++-. +|.|.+.|.++|+.+..++... .....++ .|..+.++....|.++.+ |..-+|........
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998865 6679999999999887776554 3333333 355566777778889988 98887766655443
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310 619 GGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 619 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
+.. ..--.-.-|.-++++...+.+.+|.
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEe
Confidence 211 1111112355666666666677764
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=1.2e-07 Score=92.82 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=133.7
Q ss_pred eeEEEEecCCCEEEEEc-CCeEEEEEcCCcee--eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeEE
Q 001310 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 880 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 880 (1103)
..++.|++.+..+++.. +|.+.+-+...... .+..+.|.-++....|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888877775 68888665554433 347888999999999998777899999999999999999 445554
Q ss_pred E-eccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCC-CceeeeeeeecCCCcccCCCCceEEEEcCCCC--EEEEEe
Q 001310 881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVH 955 (1103)
Q Consensus 881 ~-l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~--~l~~~~ 955 (1103)
. -+-|...|.++.-+| ++.+++||+.|..|++||..+ ++. + ..+ ...+.|..+..+|.-. .|+++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-----l--~~~--~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-----L--FKA--KVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-----c--ccC--ccccceEEEEecchhhhHHHHHHH
Confidence 4 455889999998886 578999999999999999985 221 1 111 1125799999999644 444444
Q ss_pred CCeEEEEECCCceE----EEEeeCCCCcCeEEEEEccCCCEEEEEe-cCCcEE-EEeCCCce
Q 001310 956 ETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNLE 1011 (1103)
Q Consensus 956 d~~v~iwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~-vWd~~~~~ 1011 (1103)
-+..+|-+...+.. +......|.+-...-.|..-..+|||++ .|+.++ +|-..++.
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 44455555543322 1222344544444444533345688765 566644 66655443
No 285
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=4.8e-08 Score=108.12 Aligned_cols=506 Identities=12% Similarity=0.111 Sum_probs=260.1
Q ss_pred ceEEEecCCCceEEEEEcC----CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 337 V~~v~~spdg~~llasgs~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
-+...|+|... ++|+++- .|+|.||- ++|++.+..+.+ -.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHh
Confidence 34567888886 6777753 47888886 667755432211 2355699999999999
Q ss_pred EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE--eecC--CCce
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 488 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~--~~~v 488 (1103)
.|..-|.+.+|...+.+.-. ....|..+|..+.||++|. .++++..-|.|.+|.......++. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988754222 3457999999999999999 899999999999998764332221 1122 2334
Q ss_pred EEEEeeecCCcc------EEEEEECCCeEE-EEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310 489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 489 ~~~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1103)
+-++|.-+.++. ..+..+.+..+- .+++.......... -.-.|+|..++.++. +|+|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence 444544333321 123333333332 33333111111110 012467777777765 45576666
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCC---------------ee-------------
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKV---------------QL------------- 612 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~---------------~~------------- 612 (1103)
- .|+.....+... . ..+-|.+...-+++.-.+-.+.++-+ .+| ..
T Consensus 219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 343333332211 0 11112222122222111111111110 000 00
Q ss_pred --EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC-------eeEe---ccccccceeeeEEecCCceee
Q 001310 613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-------SVDA---AGVLSDNLRKLSVNPISTVTG 680 (1103)
Q Consensus 613 --~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~-------~~~~---~~~~~~~i~~~~~~~~~~~~~ 680 (1103)
...+... ....+.|++++..+..+..|...|.+.+|.-.... -... .+.....|+.+.|+|..+.++
T Consensus 293 r~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 0011111 12357899999999999999999999999654331 1112 222334455555655433332
Q ss_pred eeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEE
Q 001310 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1103)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~v 760 (1103)
+.+....+.+... ..+ ..|.....++.-+..+-.|..+.
T Consensus 372 vn~~~~v~ll~E~-----~l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 372 VNTEEDVVLLGEN-----SLT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhheeeeccC-----chH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence 2222111111000 000 00111111111111111011110
Q ss_pred eecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE--
Q 001310 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-- 838 (1103)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~-- 838 (1103)
+|.. .. + ...-++..++.+ ...++.....+|..|++.+...+..
T Consensus 411 --------------------------sGv~-~~--l---~~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGVS-QD--L---KLSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cchh-hh--h---hhccchhhheec--cceEEEEcCceEEEEEecccchhHHHh
Confidence 1100 00 0 012233344443 3456666678889999863321111
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe--ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1103)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~ 916 (1103)
........+++++.. .++...++.+ |.++.+. |...+.+ ..-.+.|.-+.++ |.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence 112223445556553 4455555544 4554443 3333322 2234555555554 7889888888888888888
Q ss_pred CCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE--E-eC----CeEEEEECCCceEE
Q 001310 917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--V-HE----THLAIYEAEELTCL 970 (1103)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~-~d----~~v~iwd~~~~~~~ 970 (1103)
..+...........+-.+..+.+..+..+..|..+.+ + .+ .++..||.++++..
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7665554444444444444457788888887776654 2 22 47999999877653
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=4.6e-09 Score=125.33 Aligned_cols=200 Identities=16% Similarity=0.247 Sum_probs=159.7
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1103)
.|-..|.++.=+|...+.++|+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecccC
Confidence 35578888999999999999999999999999998877654432 33 8899999999999 68888899999999965
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCee-EEecCCCccEEEEEEccCCCEEEEEec
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
.++....+.|.....+..|.. ..+++++ .++.+.+||..-.... ..-..|.+.++++++.|..+.+++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 677777888988888888754 3456553 5678999986543322 233778899999999999999999987
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
+|.|++||++..+.++.++. +. ...++++|+..|.++||++.....+..++..
T Consensus 2357 ----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2357 ----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred ----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 55599999988777665543 33 4578999999999999999998888777643
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=9.1e-09 Score=112.13 Aligned_cols=211 Identities=16% Similarity=0.265 Sum_probs=148.7
Q ss_pred eeeccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 389 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 389 ~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
..++.||+..|+.+.|.|. -..||+++.|..+..||+.+.. ..+.....-......++|+-... .+...+..+.|
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence 3458899999999999995 5678999999999999998865 33334444555677889987665 45666667789
Q ss_pred EEEeCCCC-ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cCCCccEEEEEEccCCCEEE
Q 001310 468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 468 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~ 545 (1103)
.+||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-++.|-|.-..
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 99999876 56788899999999998754322 46889999999999999876544322 23344666677777655443
Q ss_pred EEecCCCCceeEEE---------EeCCC-CeeEEEEecccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEE
Q 001310 546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW 605 (1103)
Q Consensus 546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iw 605 (1103)
.--..+ .+.+.+ |+..+ .+.+..|.||. +.|....|-.. .-+|++-+.|.++++|
T Consensus 262 ~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eccccC--CeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 332221 223433 33332 35788898888 66655444322 2368999999999999
Q ss_pred ECCC
Q 001310 606 DMNK 609 (1103)
Q Consensus 606 d~~~ 609 (1103)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8764
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=4e-06 Score=94.86 Aligned_cols=212 Identities=10% Similarity=0.068 Sum_probs=123.3
Q ss_pred cCCeEEEEEcCCceeeEEecCCCCC-----eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC-------C
Q 001310 821 SGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------R 888 (1103)
Q Consensus 821 ~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-------~ 888 (1103)
.++.+..+|..+|+.+......... ..+.+.. ++ .++.++.+|.+..+|..+|+.+........ .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 3566777777777776665432111 0111222 22 466678899999999999987665431100 0
Q ss_pred EEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310 889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966 (1103)
Q Consensus 889 V~~l~~s~--dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~ 966 (1103)
...+.-+| .+..+..++.+|.+..+|..+|+..-.... + ....+.. .++...+...++.++.+|..+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence 01111122 245666677899999999999875432211 1 1111221 234444446889999999999
Q ss_pred ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEE
Q 001310 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHA 1046 (1103)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1046 (1103)
|+.+............+... .+.+|++++.||.+.+.|..+|+.+.+..... ..+.+.-
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~-------------------~~~~s~P 372 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS-------------------SGFLSEP 372 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-------------------CcceeCC
Confidence 98765422111111222222 24567778899999999999999887765210 0011100
Q ss_pred EEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1047 IAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1047 ~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
+. . +..|+.++.||.|+.+++
T Consensus 373 ~~-~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VV-A---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE-E---CCEEEEEeCCceEEEEeC
Confidence 11 1 467888999999998875
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.4e-08 Score=106.80 Aligned_cols=295 Identities=10% Similarity=0.125 Sum_probs=186.8
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
-.+..+.||+..|.+++--.+.+. +++++.|.+|++|.+.. |..+.+ +.|. ..+..|+.+|..+.
T Consensus 726 irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQ-----fTY~aHkk~i~~ig 791 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQ-----FTYQAHKKPIHDIG 791 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceee-----eEhhhccCccccee
Confidence 345677899999999887666663 78999999999999864 222222 1122 22667999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
|-.|-++++++ ||.|.+||.--|..+.+...-..| +.+..+..-++ .+.++++.++...+|+++|.+.++-...++
T Consensus 792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 99999999886 777999999887765533221222 23333333344 344355556889999999998887665554
Q ss_pred -----cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 483 -----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 483 -----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
+..+.+.+++..+ .|+.++.+-..|+|.+.|.+++..+..+.........++ .|..+.|+.... +..+
T Consensus 869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl 941 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL 941 (1034)
T ss_pred eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence 3445678888754 567899999999999999998887665554443333333 244445554432 3446
Q ss_pred EE-EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCCCCCCCceEEEec
Q 001310 558 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN----KVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 558 ~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
.+ |...+|......+... .+..- .-.-|..++++.....+.+|--. ....+..+....-....++++.-|
T Consensus 942 aVnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred EeeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence 55 8776665544443322 11111 11235567777766677777421 112223333322223356777777
Q ss_pred CCCEEEEEECCCeEEE
Q 001310 633 NGTLLAVIANENRIKI 648 (1103)
Q Consensus 633 ~g~~l~~~~~dg~i~i 648 (1103)
-..-+..|...|.|.+
T Consensus 1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccchhhccCCCCceee
Confidence 6666777888887765
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=121.98 Aligned_cols=226 Identities=13% Similarity=0.180 Sum_probs=167.0
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCC
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~ 486 (1103)
+...+....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444455555565554432 2344566788888788777 789999999999999999998887742 337
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
.|+.+.|+ .+|..+..+..||.+.+|... .+.......|......+.|-. ..+++++.+.+ ++.+.+||..-..
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 78888884 466788899999999999877 455556677777777777766 66777766555 6779999975322
Q ss_pred eEE-EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310 567 IKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1103)
Q Consensus 567 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~ 645 (1103)
... .-..|. +.++++++.|....+++||.+|.|++||++..++.+.++. +. ...++++|+..|.
T Consensus 2327 ~~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 111 114444 8999999999999999999999999999998887776653 33 4668999999999
Q ss_pred EEEEEcCCCCeeEecc
Q 001310 646 IKILETPESNSVDAAG 661 (1103)
Q Consensus 646 i~iw~~~~~~~~~~~~ 661 (1103)
++||++..-..+..+.
T Consensus 2392 ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEEccccchhhcCc
Confidence 9999998776555543
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.4e-06 Score=97.72 Aligned_cols=213 Identities=9% Similarity=-0.001 Sum_probs=131.4
Q ss_pred eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-EEEEEeCC---CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC
Q 001310 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1103)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 899 (1103)
.|.+-|.... ..+.+.... ......|+| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLT-YQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCC-ceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 3555555433 233333333 778899999 676 36654433 579999999887544333 455567788999998
Q ss_pred EEEEE-eC--CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC----eEEEEECCCceEEEE
Q 001310 900 ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 972 (1103)
Q Consensus 900 ~l~s~-s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----~v~iwd~~~~~~~~~ 972 (1103)
.|+.. +. +..|.++|+.+++... +....+ ......|||||+.|+..++. .|+++|+.+++....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 33 3568888988876322 222221 12356899999999875443 799999998877543
Q ss_pred eeCCCCcCeEEEEEccCCCEEEEEecC---------CcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCcee
Q 001310 973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVY 1043 (1103)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~~~d---------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1043 (1103)
...+. ....|||||++|+..+.. ..|.+.|++++... .+... .. .
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-------------------~~-~- 370 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-------------------GV-N- 370 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-------------------CC-c-
Confidence 33222 124899999998876643 36888888888643 22211 00 0
Q ss_pred eEEEEECCCCCcEEEEEecC-CcEEEEccCCCCCC
Q 001310 1044 PHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1077 (1103)
Q Consensus 1044 ~~~~~~~p~~~~~l~~~~~d-g~v~vw~~~~~~~~ 1077 (1103)
....|+|| |..|+....+ +.-.+|-+...+.+
T Consensus 371 -~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 371 -QFPRFSSD-GGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred -CCeEECCC-CCEEEEEEccCCcEEEEEEecCCCe
Confidence 13578898 6666555543 45456665445543
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=1.8e-06 Score=88.36 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=127.9
Q ss_pred EEEEecCCCEEEEEc------CCeEEEEEcC-CceeeEEecCCCCCeeEEEEcCCCCCEEEEEe----------------
Q 001310 807 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 863 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---------------- 863 (1103)
--+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 368999999999884 3679999999 7888889988777778889999 787777652
Q ss_pred --CCCeEEEEEcCCceeEEE--e--ccCCCCEEEEEEccCCCEEEEEeCCC-------eEEEEEcCCCceeeeeeeecCC
Q 001310 864 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDA-------QIFVWDVDGWGIQTCRSLQTPD 930 (1103)
Q Consensus 864 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~dg-------~I~iwd~~~~~~~~~~~~~~~~ 930 (1103)
.+-++...|..+|+.+.+ + .-|...|..|++.++|..++-.-..| .|-+++-... .. .+..+.
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~--~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LR--LLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ce--eccCCh
Confidence 223566678888988876 4 33888899999999987766543333 2444443331 11 111111
Q ss_pred Cc-ccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEec
Q 001310 931 GV-MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1103)
Q Consensus 931 ~~-~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1103)
.. ....+.+-+++++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 11 1122478899999999999885 56789999999999987633 3355666766666 6666553
No 293
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.85 E-value=0.00062 Score=78.67 Aligned_cols=607 Identities=11% Similarity=0.069 Sum_probs=300.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEEec-CCCcccc---ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
....+|...+.|..+|.+...-+. +++.... ....-+...-..|+..-++| .++.||.-|.=++-.+.+..-.
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888877655554 4443322 12233455556777777777 5888887776566555433221
Q ss_pred -------EEeecCCCceEEEEeeecC--CccEEEEEE---CCCeEEEEEcCCCCeeE---EecCCCccEEEEE-------
Q 001310 479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA------- 536 (1103)
Q Consensus 479 -------~~~~~~~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~------- 536 (1103)
.++. .-+||.+++..... .+..+++++ .||++|+..-.-+-... .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2222 34578888765433 334455553 57888876422111100 1111 11111111
Q ss_pred ----------------------------EccCCCEEEEEecCCCC-----ceeEEEEeCCCCeeEEEEecccccCCceEE
Q 001310 537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 583 (1103)
Q Consensus 537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 583 (1103)
|+.+.+.+++....++. ...|++++-. .....+... ..++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence 22222233322221110 0112333221 111111111 23333
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC--C----CEEEEEECCCeEEEEE-cCCCCe
Q 001310 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS 656 (1103)
Q Consensus 584 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--g----~~l~~~~~dg~i~iw~-~~~~~~ 656 (1103)
...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.- .++...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 3344455567777777777777776665 222222222346888988874 2 3788887766555443 333322
Q ss_pred eEeccc----cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc--CCccceeeeccC
Q 001310 657 VDAAGV----LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA--RPSECQSLLLPS 730 (1103)
Q Consensus 657 ~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~ 730 (1103)
+..... ....+.-..+ ..|..+|.++..||.+.-+.++.. .........
T Consensus 572 ~~~~~l~~~~iPRSIl~~~~----------------------e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~--- 626 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLTTF----------------------EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT--- 626 (1096)
T ss_pred eeeeccCCCccchheeeEEe----------------------eccceEEEEEcCCceEEEEEEEcccceEccccccc---
Confidence 222111 1111111111 234677777777887665554422 211111110
Q ss_pred ccccccEEEEEEecCCcEEEEeecCceEEEeecCCC---------cc----------cccccccc-ccCCeeecCCCCCc
Q 001310 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN---------DL----------TLSTEATT-KVPPRLYQPRHGPQ 790 (1103)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~---------~~----------~~~~~~~~-~~~~~~~~~~~~~~ 790 (1103)
-...++.--.|+..++.-+.+.+|.-..+|.-+.. .. .+++-+.. ...+.+..+..-+.
T Consensus 627 -lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk 705 (1096)
T KOG1897|consen 627 -LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK 705 (1096)
T ss_pred -cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhh
Confidence 12233333344443333333333322222221111 00 01111110 11122222221111
Q ss_pred eeeccCCCCCCCCCeeEEEEecCCCEEEEEcC---------------CeEEEEEcCCceeeEEecCCC----CCeeEEEE
Q 001310 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---------------GVISLYIVMTFKTILTIMPPS----PTATSLAF 851 (1103)
Q Consensus 791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d---------------g~i~iwd~~~~~~~~~~~~~~----~~i~~l~~ 851 (1103)
+....++ -......+++.+....+++.++ ..++++|-++.+.+....-.. -.+.+..|
T Consensus 706 l~irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~ 782 (1096)
T KOG1897|consen 706 LHIRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF 782 (1096)
T ss_pred cceeeec---CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee
Confidence 1111121 3344556666664444444321 137788887777665433211 24455568
Q ss_pred cCCCCCEEEEEe----------CCCeEEEEEcCCceeEEEecc--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310 852 NPHDNNVIAIGM----------DDSTILIYNARSSEVISKLEG--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1103)
Q Consensus 852 s~~d~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~ 919 (1103)
..|.+.++++|+ ..|.|.++.+..++.+..... -.+.+.++..- +|++||. -...|++++...++
T Consensus 783 ~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 783 TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTER 859 (1096)
T ss_pred cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccc
Confidence 874478888886 247888888887444443332 23555555432 5777775 45679999998853
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe---CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEE
Q 001310 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 996 (1103)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~---d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1103)
.++....+.. ++..+...-.|..+++|. .=++..|+-..|...-.-..-+....+++.+-.+..++. +
T Consensus 860 -----eLr~e~~~~~---~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-a 930 (1096)
T KOG1897|consen 860 -----ELRIECNISN---PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-A 930 (1096)
T ss_pred -----eehhhhcccC---CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-e
Confidence 3444444443 788999999999999972 235666777776666554556788899999887777666 4
Q ss_pred ecCCcEEEEeCCCce----eEEeecccc-c-cCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310 997 FVDGTLSIHEASNLE----VQCRILSTA-Y-LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus 997 ~~dg~v~vWd~~~~~----~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
..+|.+.+-..++.. ......... | ++.-+ .-..|+.-|.+..-+..|..+ .+..|.-+|.|.+--
T Consensus 931 e~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelv-------n~f~hg~lv~~~~~s~~~~~~-~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 931 ENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELV-------NKFRHGSLVMQLGDSMIPLEP-KVLFGTVNGSIGIIV 1002 (1096)
T ss_pred cccccEEEEEecCCCCchhhhhcccceeeEEeccce-------eeeeecceEeeccccccCCCC-cEEEEEccceEEEEE
Confidence 567887776554321 111111000 1 11110 002244444443334455533 488889999987653
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=3.9e-08 Score=100.72 Aligned_cols=165 Identities=21% Similarity=0.168 Sum_probs=115.0
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
.++.+.++|.++ ++|++..+....++++...... .+.++.. .. ...-+++.|-.+......+.
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CV---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ec---ccCcceeeeeeccceEEEEe
Confidence 556677788887 7888888777767776544320 1111110 01 12334455555555555553
Q ss_pred ---CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEE
Q 001310 416 ---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1103)
Q Consensus 416 ---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~ 491 (1103)
....+.+|+...+.+. .+-||-..++.++|+||++ .++++..|..|+|-.......+..+ -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 4445666666654332 3569999999999999998 8999999999999887766666555 5799999999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1103)
+..+ +..|+++|.|+++++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9853 3579999999999999999988775443
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=5.2e-08 Score=99.79 Aligned_cols=158 Identities=9% Similarity=0.087 Sum_probs=113.8
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEeccCCCCEEEEEEccCCCEEE---EEeCCCeEEEEEcCCCce
Q 001310 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWGI 920 (1103)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~---s~s~dg~I~iwd~~~~~~ 920 (1103)
.+..++ ++++||++..+....++++.... ++..... ...-+++.|..+..... .++....+.+|+...+.
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence 345666 88899998888887777766432 2222221 12223444444433333 34555667777766533
Q ss_pred eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC
Q 001310 921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
....-||.. .++.++||||+++|+++ .|..|++-....--.+..+..||..-|..++.-+ +..|+++|.|
T Consensus 144 -----~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD 214 (390)
T KOG3914|consen 144 -----CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGD 214 (390)
T ss_pred -----cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCC
Confidence 233456665 79999999999999998 8899999999888888888899999999999855 4569999999
Q ss_pred CcEEEEeCCCceeEEeec
Q 001310 1000 GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 1000 g~v~vWd~~~~~~~~~~~ 1017 (1103)
++|++||+.+|+.+..+.
T Consensus 215 ~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcEEEEecccCCcccccc
Confidence 999999999999885554
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=8.1e-06 Score=83.68 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=142.4
Q ss_pred eEEEEec-CCCEEEEEc-CC-eEEEEEcCCceeeEEecCCCCCe--eEEEEcCCCCCEEEEEe-----CCCeEEEEEcC-
Q 001310 806 PCFALSK-NDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGM-----DDSTILIYNAR- 874 (1103)
Q Consensus 806 ~~l~~s~-d~~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~-----~dg~v~iwd~~- 874 (1103)
-.++.+| +...++.+- -| ...+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3677888 455556665 34 48899999999998887655432 3578999 899998854 34899999999
Q ss_pred CceeEEEeccCCCCEEEEEEccCCCEEEEEeC------------------CCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1103)
Q Consensus 875 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1103)
+.+.+.++..|.-.-..+.+.|||+.|+.+-. +-.+..-|..+|++.....+... -+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc-ccc---
Confidence 66788888887766677899999988877521 12355566777775553333111 122
Q ss_pred CCceEEEEcCCCCEEEEE-eCC-------eEEEEECCCceEEEEeeC------CCCcCeEEEEEccCCCEEEEEe-cCCc
Q 001310 937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 1001 (1103)
Q Consensus 937 ~~v~~l~fs~dg~~l~~~-~d~-------~v~iwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~dg~ 1001 (1103)
.++..+++.++|..++.. ..+ -|.+++-... +..+.. .-...+-+|+++.++.++++.+ .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 369999999999988764 111 2555554432 221111 1257899999999998876554 6789
Q ss_pred EEEEeCCCceeEEeec
Q 001310 1002 LSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 1002 v~vWd~~~~~~~~~~~ 1017 (1103)
+.+||..+++++....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999987666
No 297
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.7e-06 Score=94.72 Aligned_cols=342 Identities=14% Similarity=0.111 Sum_probs=190.5
Q ss_pred EEEEEECCCCCEEEEEe----CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 399 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 399 V~~~~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
-+-..|+|...++|+++ ..|+|.||- ++|+.-+.. +..- .+++++|+|..- +|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999999885 357888884 344422211 1222 356799999766 788888899999999877
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC--C--Cc--cEEEEEEccCCCEEE---
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P--GL--GCTRMAYSANGRRLF--- 545 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~~--~i~~~~~s~dg~~l~--- 545 (1103)
.+.-.....|..+|..+.|+ ++|..++++..-|.+.+|.++-......... | +. ...+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 77666667899999999995 4778999999999999998875433332211 1 11 234455566643221
Q ss_pred --EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 546 --~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
+.+.+..+--...-|...+.. +... -.-.|+|..++.++.+|+|+-.|- .|+..........
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 111111100001112211110 0000 012478888899999999988774 4555555443321
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
..+-|.+...-+++...+-.+.++-....... .....+.++-. .|. ..|. ++.
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~-------ee~~~vk~sgk-----~Gg------------rqGg-iA~ 285 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS-------EERCAVKVSGK-----LGG------------RQGG-IAC 285 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCch-------HHhhhhhhccc-----cCC------------ccCc-ccc
Confidence 33556665555555555544444433321100 00000011000 000 0111 222
Q ss_pred eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1103)
Q Consensus 704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 783 (1103)
+...|.++- .... .......+.+++++..+..+.++...|.+.+|.-....+. ...++.+|
T Consensus 286 sEssGvLr~--------~eKy-----g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~------g~p~~d~w 346 (1416)
T KOG3617|consen 286 SESSGVLRK--------SEKY-----GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ------GDPTIDVW 346 (1416)
T ss_pred ccccccccC--------Ccch-----hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc------CCCCcceE
Confidence 222231110 0000 0124567899999999999999999999999974333221 11235566
Q ss_pred cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc
Q 001310 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1103)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~ 821 (1103)
...+.. ...+.|+.+.|.|-...+++-+
T Consensus 347 ~l~~~~----------e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 347 TLNGKR----------ESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EecCch----------hhccceEEEEeccccchhhhhh
Confidence 655443 2456788888888555544433
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=8.1e-06 Score=80.82 Aligned_cols=250 Identities=11% Similarity=0.137 Sum_probs=136.4
Q ss_pred eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1103)
Q Consensus 338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 417 (1103)
|.++.+.||+ +||.- .|..|.|=.....-.....++ .+.+...-.-+.++||||+.+||.+...
T Consensus 1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence 4578899998 56654 456676666544321111111 1123334456779999999999999999
Q ss_pred CeEEEEEecCCCccc--cceEec-cccccEEEEEEecCC---C-ceEEEEEcCCCceEEEeCCCC-----ceeEEeec--
Q 001310 418 HIVQLYAYHGGSDAR--QQLEID-AHVGNVNDLAFSAPC---K-QISVITCGDDKTIKVWDAVTG-----SRTYSFEG-- 483 (1103)
Q Consensus 418 ~~i~iwd~~~~~~~~--~~~~l~-~h~~~v~~~~~s~d~---~-~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~-- 483 (1103)
|+|+++|+.+.+... +..... .-...|..+.|.+-. + ...|+.-..+|.++=+-+..+ +..+++..
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 999999998754321 100111 123467777775532 1 013555666777776665322 23344432
Q ss_pred -CCCceEEEEeeecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC----ceeE
Q 001310 484 -HGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG----ESFL 557 (1103)
Q Consensus 484 -~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~----~~~i 557 (1103)
+...|.++.+++.. ++|+.|+.. ..-..+ ......+++-.+-.+..+........+. ..+.
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 46789999997654 455555432 210000 0111122222221121111111100000 0012
Q ss_pred EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
.+|.+-+.+. +.........|..+..+|||..|++...+|.|.+|++.+-+.......+
T Consensus 212 ~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 212 GLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 2333332222 1111112478999999999999999999999999999987776665543
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=1.4e-05 Score=90.52 Aligned_cols=153 Identities=20% Similarity=0.117 Sum_probs=93.1
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCC--ceE-----EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 529 (1103)
.++.++.++.+.-+|.++|+.+........ ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 477777888999999999998876543220 000 0000011123467788899999999999999888766544
Q ss_pred ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC--CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
....+..+. ++ .++.+.. ++.++.+|..+|+.+-.+....... .....-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 34 4444432 5679999999999887765432000 00001111 1345777888899999999
Q ss_pred CCCeeEEEEc
Q 001310 608 NKVQLLTTID 617 (1103)
Q Consensus 608 ~~~~~~~~~~ 617 (1103)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9888765543
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=2.7e-06 Score=82.23 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=129.5
Q ss_pred EEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ee-EE-EeccCCCCEEEE
Q 001310 816 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV-IS-KLEGHSKRVTGL 892 (1103)
Q Consensus 816 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~-~~-~l~~h~~~V~~l 892 (1103)
.+++..|.+++++++.-+..........-.+.++++++ |++++++.+....|..|.+... +. +. ....-++.-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 33444477788887764433333322223488999999 9999999999999999999863 22 22 233345566788
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCE--EEEE-eCCeEEEEECCCceE
Q 001310 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLV-HETHLAIYEAEELTC 969 (1103)
Q Consensus 893 ~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~--l~~~-~d~~v~iwd~~~~~~ 969 (1103)
.|+.....+|++..||++.|||+..-....... ......+.+.++.+.||+.|.+ |..+ .-+.+.+.|++++..
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 999999999999999999999998733211111 1111223468999999987643 3344 557899999999876
Q ss_pred EEEeeCC------C-CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 970 LKQWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 970 ~~~~~~~------h-~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
...+... | ...|+.-.|+.++.-..+.+++ .+.-|++.+..
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 6553322 3 2348888999988877777655 35667766544
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=9e-08 Score=104.61 Aligned_cols=295 Identities=13% Similarity=0.150 Sum_probs=188.9
Q ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccc--cEEEEEEecCCCce-EEEEEcCCCceEEEeC
Q 001310 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQI-SVITCGDDKTIKVWDA 472 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~--~v~~~~~s~d~~~~-~l~s~~~d~~i~iwd~ 472 (1103)
.+++.++.++|.|+-+|.++.-| +.+-|+...- .+. .+-.|.. .|-.+.|+|..... .+++.+ ...-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~--~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF--TPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCC--CCc-eeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence 46788999999999999998888 6666776532 111 1222332 46778888875543 445444 445568998
Q ss_pred CCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccC-CCEEEEE
Q 001310 473 VTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFSC 547 (1103)
Q Consensus 473 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d-g~~l~~~ 547 (1103)
... ..-..+.+|...|+.+-|++. ....+++++.|-.++.||+++..... ....-......+.|+-. +..+++.
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCC-CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 643 334567899999999999875 34689999999999999998866544 33333345566788874 4445544
Q ss_pred ecCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 548 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
. ...|.+||.+.| ..+..+++|. ..|+.+.|..- ...+.+.+.||+|++||............... .++
T Consensus 178 h-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi 248 (1081)
T KOG0309|consen 178 H-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI 248 (1081)
T ss_pred c-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence 3 234999999865 5667777766 78888888653 34578889999999999876433222221111 345
Q ss_pred ceEEEecCCCEEEE--EECCCeEEE---------EEcCC-CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCC
Q 001310 626 PRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1103)
..-.+.|-|.-.++ .-.+..+.+ |+..+ .+++..+.+|.+.|....|-...... ++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence 55566663332221 111223333 33332 36778888888887766665332211 11
Q ss_pred CCCCCccceeeccccccccccccc
Q 001310 694 PKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
.....-.|++-+.|.++|+|.+..
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCccceeEEEeecCCceEeeeccH
Confidence 112234588999999999998763
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=4e-06 Score=87.93 Aligned_cols=223 Identities=13% Similarity=0.132 Sum_probs=138.2
Q ss_pred CCeEEEEEcCCceeeEEecCC--CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC
Q 001310 822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1103)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 899 (1103)
+|.|..||..+|+.+...... .....+.++. ++..+++++.++.++.||..+|+.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887542 1222222332 345677778999999999999998877764 22211111 22355
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCC
Q 001310 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 978 (1103)
Q Consensus 900 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~ 978 (1103)
.++.++.++.|..+|..+|+..-........... .........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6666778889999999999875542111111100 11222333337777775 589999999999999887544221
Q ss_pred c---C------eEEEEEccCCCEEEEEecCCc-EEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEE
Q 001310 979 V---P------ISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIA 1048 (1103)
Q Consensus 979 ~---~------v~~l~fs~dg~~l~t~~~dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1048 (1103)
. . +..-....++ .++.++.++. +.+ |+.+++.+.+.. .. .... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--------------------~~~~---~ 207 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--------------------GIYS---L 207 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---------------------ECE---C
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--------------------CccC---C
Confidence 1 1 1222223345 6666777775 555 999999653211 00 0111 1
Q ss_pred ECCCCCcEEEEEecCCcEEEEccCCCCCCCc
Q 001310 1049 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1079 (1103)
Q Consensus 1049 ~~p~~~~~l~~~~~dg~v~vw~~~~~~~~w~ 1079 (1103)
..+. +..|+.++.+|.|..||+...+..|.
T Consensus 208 ~~~~-~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 208 PSVD-GGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EECC-CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ceee-CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 2233 67777777999999999988877774
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.71 E-value=1.8e-06 Score=83.47 Aligned_cols=148 Identities=11% Similarity=-0.035 Sum_probs=106.2
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
+.++++|+|++++++.+....|..|.+...............++.=.+..|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 78999999999999999999999999976543322223334444556888998877 7999999999999999865433
Q ss_pred E-----EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC--------ccEEEEEEccCCCEEE
Q 001310 479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF 545 (1103)
Q Consensus 479 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~ 545 (1103)
. +-..|.+.++.+.|++.+--.+|+..-.-+.+++.|+++......+.... ..|..-+|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358899999999865555677777777889999999877554332222 1355666666666555
Q ss_pred EEe
Q 001310 546 SCG 548 (1103)
Q Consensus 546 ~~~ 548 (1103)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 544
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=6.1e-06 Score=86.53 Aligned_cols=224 Identities=14% Similarity=0.107 Sum_probs=132.8
Q ss_pred eecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE
Q 001310 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 861 (1103)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las 861 (1103)
.+|+.+|+.+....+.. ......+..+..++..++...++.+..||..+|+.+.++............ .+..+++
T Consensus 7 ~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v 81 (238)
T PF13360_consen 7 ALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYV 81 (238)
T ss_dssp EEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEE
T ss_pred EEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---ccccccc
Confidence 34445555555544321 112222223334444444446899999999999999887753321122222 2346666
Q ss_pred EeCCCeEEEEEcCCceeEEEe-ccCC---CCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc--C
Q 001310 862 GMDDSTILIYNARSSEVISKL-EGHS---KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--L 935 (1103)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l-~~h~---~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~ 935 (1103)
++.++.++.+|..+|+.+... .... ..........++..++.+..++.|..+|.++|+..-........+... .
T Consensus 82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 778889999999999998874 3221 112233333447888888889999999999998765444433222110 0
Q ss_pred CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
...+..-....++..+++..++.+.-+|+.+++.+.. ... ..+.. ....++..|++++.++.|..||+.+|+.+-
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~-~~~--~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS-KPI--SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE-ECS--S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE-ecC--CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 0012233333455444445677544449999997643 221 22222 245777888888899999999999999764
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=3e-07 Score=90.32 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=58.8
Q ss_pred CCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCce---eeEEecCCC-----CCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1103)
Q Consensus 800 ~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1103)
.|...+.++.|..|.+.++++.+=.|-+|++.--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 58889999999999999999999999999986322 223334443 2568888998667777788888999998
Q ss_pred EcCC
Q 001310 872 NARS 875 (1103)
Q Consensus 872 d~~~ 875 (1103)
|++.
T Consensus 250 DlRq 253 (460)
T COG5170 250 DLRQ 253 (460)
T ss_pred hhhh
Confidence 8874
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=4e-05 Score=80.46 Aligned_cols=221 Identities=13% Similarity=0.134 Sum_probs=139.8
Q ss_pred EEEEec-CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe-cCCCE
Q 001310 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 816 (1103)
Q Consensus 739 ~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~ 816 (1103)
+++|.+ ++..+++-...+.|..|+.... . .....+ .....+++. +++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~------~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL------PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES------SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec------CCCceEEEEccCCEE
Confidence 567887 5555555455677777664432 2 111111 126677777 67655
Q ss_pred EEEEcCCeEEEEEcCCceeeEEecC-----CCCCeeEEEEcCCCCCEEEEEeCC--------CeEEEEEcCCceeEEEec
Q 001310 817 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 883 (1103)
Q Consensus 817 l~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~ 883 (1103)
+++. .+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..++.. ++......
T Consensus 55 ~v~~-~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 55 YVAD-SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEE-TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred EEEE-cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 5554 45556669988855433322 345678999999 88877765543 567777777 55433333
Q ss_pred cCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEcCCCc--eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310 884 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1103)
Q Consensus 884 ~h~~~V~~l~~s~dg~~l~-s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v 959 (1103)
.-...+.|+|+||++.|. +-+..+.|..++++... ......+....... +..-.+++..+|++.++. ..+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 345678999999998765 55678889999986432 33333333222221 136789999999988875 78899
Q ss_pred EEEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEe
Q 001310 960 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 997 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~ 997 (1103)
.+++.+ |+.+..+..+ ...+++++|. +|.+.|++.+
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999988 8888775554 4589999995 6766665543
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.68 E-value=2e-05 Score=81.70 Aligned_cols=208 Identities=16% Similarity=0.180 Sum_probs=136.0
Q ss_pred CeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeE
Q 001310 804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVI 879 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~ 879 (1103)
....+++|.||+++.+.. ..+|.|.|+..++.+.++..+.. .+.+ |...+-+.+-+.||.+.-..+. .|+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEE-EEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEE-ecCCCceEEEecCCceEEEEECCCCCEe
Confidence 344578999999999886 47799999999999988864331 1222 2133467788889999999988 45543
Q ss_pred EE----eccCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcc---c-CCCCceEEEEcCCCCE
Q 001310 880 SK----LEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTR 950 (1103)
Q Consensus 880 ~~----l~~h~~~V~-~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~l~fs~dg~~ 950 (1103)
.+ |..-.+++. .-+++..+..++..+..|.|+--|+.................. . ..+.-.-+++++..+.
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 22 222222222 3345556666766889999999999987755544444332110 0 0134567899987766
Q ss_pred EEE----EeCC-------eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEE-ecCCcEEEEeCCCceeEEeec
Q 001310 951 FLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 951 l~~----~~d~-------~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~-~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
|.+ +.++ .|.++|+.+++.+..+... .++.+|..|.|.+ +|++. ..++.+.+||..+|+++.++.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 665 2222 4999999999999886643 4688999999887 45444 457999999999999998887
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=3.7e-07 Score=87.69 Aligned_cols=209 Identities=14% Similarity=0.205 Sum_probs=129.7
Q ss_pred ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1103)
Q Consensus 337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 416 (1103)
|+.+.|+-+- .|+++..++.+......++.+.. .|+-.....++.. +..|+++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 6677777664 57888888888877766655442 2333223333332 3345555445555556888999999
Q ss_pred CCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEE
Q 001310 417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1103)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1103)
||.+.+.+.+.- ++....+. .|.+. .+.+....+. .+.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 12221 1222333344 233322 1234556665544333222222344888
Q ss_pred EEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001310 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1103)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1103)
++-+|... +.+++|+.||.+-+||.++..... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99887644 688999999999999999875444 5677888999999999 6678888876 55599999764
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=2.4e-05 Score=82.11 Aligned_cols=221 Identities=18% Similarity=0.154 Sum_probs=141.3
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEe-cCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 401 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 401 ~~~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
+++|.+ ++.++.+--..+.|..|+..++.... +... ....+++. +++. ++.+..+ .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~--~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP--GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS--SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC--CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 467888 67777776678899999998875321 1111 16677777 6765 4545544 4566699998665
Q ss_pred EEeec-----CCCceEEEEeeecCCccEEEEEECC--------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310 479 YSFEG-----HGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 479 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1103)
..... .....+.+++. ++|.+.++.... |.|..++.+ ++ .......-...+.++|+||++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEc--CCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 44432 33556778874 467766666544 456666655 33 222222344568999999999887
Q ss_pred EEecCCCCceeEEEEeCCCCe--e--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310 546 SCGTSKEGESFLVEWNESEGA--I--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1103)
.+.. ..+.|+.+++.... . .+.+.......+....+++..+|+..++....+.|.+++.+ |+.+..+....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 6543 25568888875322 1 22232222111347889999999888887789999999987 88888888763
Q ss_pred CCCCceEEEe-cCCCEEEEEE
Q 001310 622 LPENPRICFN-KNGTLLAVIA 641 (1103)
Q Consensus 622 ~~~v~~v~~s-~~g~~l~~~~ 641 (1103)
..+++++|. ++.+.|++.+
T Consensus 225 -~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 -PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SSEEEEEEESTTSSEEEEEE
T ss_pred -CCEEEEEEECCCCCEEEEEe
Confidence 357899994 6766666554
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.7e-08 Score=110.64 Aligned_cols=216 Identities=15% Similarity=0.224 Sum_probs=155.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-CceEEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-KTIKVW 470 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-~~i~iw 470 (1103)
+..|....+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+.+.. --..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 66789999999999999999999999999999999997655 67799999999999999984 23333333 357899
Q ss_pred eCC-CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC----CccEEEEEEccCCCEEE
Q 001310 471 DAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 471 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~ 545 (1103)
++. ++...+++.+- .++.|+.+ ...-+.|.......+||+++.....++-.. ...-++..|+|+.++++
T Consensus 1173 ~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 976 34555555432 34455432 223344445567889999998776653211 12336788999998887
Q ss_pred EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
-- =.+||.+..+.++.|.... ..+ .-.|+|.|+.++.-++ |||+++.+.++..+.-..
T Consensus 1247 nd---------GvLWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq---- 1304 (1516)
T KOG1832|consen 1247 ND---------GVLWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ---- 1304 (1516)
T ss_pred eC---------ceeeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----
Confidence 42 2479999888877776544 222 2349999999998775 999999998887765432
Q ss_pred ceEEEecCCCEEEE
Q 001310 626 PRICFNKNGTLLAV 639 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~ 639 (1103)
..+.|+..|..++.
T Consensus 1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eEEEeccCccchhh
Confidence 57889888876654
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.58 E-value=6e-05 Score=78.34 Aligned_cols=285 Identities=12% Similarity=0.125 Sum_probs=157.2
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEEcCCCC---
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1103)
.+++++|..+++.+-.+.... .-.+..+|+++.+++++ ..-.|.+||..+-.....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 459999999999888777633 45577899999998754 334689999999988876655432
Q ss_pred --CCCCceEEEecCCCEEEEEEC--CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCC
Q 001310 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1103)
Q Consensus 622 --~~~v~~v~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1103)
.......+++.||+++++..- ..+|.+.|+..++.+..+...... -+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~----~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW----LIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE----EEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE----EEEecC---------------------
Confidence 123456889999998887543 467889999888776655432111 111110
Q ss_pred CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccc
Q 001310 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1103)
Q Consensus 698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 777 (1103)
.+.+.+-+.||++....++............-......-+..-+++..+..++..+.+|.++--++.......
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~------- 219 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF------- 219 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence 0112333334443333333111111110010011111222233455555566667778888777766543211
Q ss_pred cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE-c--------C--CeEEEEEcCCceeeEEecCCCCCe
Q 001310 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S--------G--GVISLYIVMTFKTILTIMPPSPTA 846 (1103)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~--------d--g~i~iwd~~~~~~~~~~~~~~~~i 846 (1103)
..-|...+..... ... ..+.-.-+++++....|.+. . + ..|.++|+.+++.+.++.. ..++
T Consensus 220 --~~~~~~~t~~e~~-~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 220 --GKPWSLLTDAEKA-DGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp --EEEEESS-HHHHH-TTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred --cCcccccCccccc-cCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 1122221100000 000 11222346666655444432 1 2 1388889999999998873 3468
Q ss_pred eEEEEcCCCCCEEEEE-eCCCeEEEEEcCCceeEEEecc
Q 001310 847 TSLAFNPHDNNVIAIG-MDDSTILIYNARSSEVISKLEG 884 (1103)
Q Consensus 847 ~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~ 884 (1103)
.+++.+.++..+|++. ..++.+.+||..+|+.+..+++
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8999999666577655 4579999999999999988874
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=0.00057 Score=66.44 Aligned_cols=136 Identities=13% Similarity=-0.039 Sum_probs=89.1
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCC
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1103)
.+++.|+..+.+.--|..++......... .++.+-+.- -|++++.+.. .+.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 46777788888887777777766543322 233332222 4667888776 4449999999998888777644 2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001310 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1103)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 646 (1103)
--......+++..+.+|+.|++.+..|..+..++...+..+.. ..+-+..|....|..+...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence 2223446778999999999999999999999998887665443 2334445522233334433433
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-06 Score=89.86 Aligned_cols=309 Identities=15% Similarity=0.139 Sum_probs=192.4
Q ss_pred ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
|.+.|+.+..+ -.+++++++-||.++.|.-... .|..... ....|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence 56666666443 5677999999999999863220 1111111 1124778899999999
Q ss_pred CCCEEEEEc--CCeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCC-CEEE-EEeCCCeEEEEEcCCce-eEEEec-cC
Q 001310 813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN-NVIA-IGMDDSTILIYNARSSE-VISKLE-GH 885 (1103)
Q Consensus 813 d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~-~~la-sg~~dg~v~iwd~~~~~-~~~~l~-~h 885 (1103)
||.++.+.+ |..++++|+.+...+.-++... ....+...++.|. ..|| +.-.+|.+.++|-.... ....++ -|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 5789999998765543332211 1122233344111 1333 33467899999976543 334444 49
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeee-----eeec---CCCcccCCCCceEEEEcCCCCEEEE-EeC
Q 001310 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-----SLQT---PDGVMTLAPSETHIQFHKDQTRFLL-VHE 956 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~~~---~~~~~~~~~~v~~l~fs~dg~~l~~-~~d 956 (1103)
..+|..+.+++-+..++|....|.|.-|.... ..+..+ -++. +-+....-+...++.|||+|..+++ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999884 111000 0000 0011111136789999999999998 688
Q ss_pred CeEEEEECCCceEEEEeeC-------------------------------CC-CcCeEEEEEccCCCEEEEEecCCcEEE
Q 001310 957 THLAIYEAEELTCLKQWFP-------------------------------IS-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus 957 ~~v~iwd~~~~~~~~~~~~-------------------------------~h-~~~v~~l~fs~dg~~l~t~~~dg~v~v 1004 (1103)
..|++++..+|+.+..+-. .| ...-+.++|...|.+|+-++-=| |+|
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 9999999999877654210 02 23346678999999999887665 999
Q ss_pred EeCCCceeEEeeccccccCCCC-----CCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEE
Q 001310 1005 HEASNLEVQCRILSTAYLRPTT-----SHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1069 (1103)
Q Consensus 1005 Wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw 1069 (1103)
.++.+++....+.......-.. ...+.........+...+ .+.+.+| +..++++-....++++
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~d-pt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQKD-PTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCCC-CeEEEeeeecceEEEE
Confidence 9999998875544211100000 000000000001111111 2235566 8899999999999988
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=1.1e-05 Score=90.48 Aligned_cols=183 Identities=12% Similarity=0.072 Sum_probs=119.1
Q ss_pred EEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEe
Q 001310 809 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKL 882 (1103)
Q Consensus 809 ~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l 882 (1103)
-++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3567887765554 4678889999888877765433 446789999 888888776322 2333322221111111
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC----CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eC
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 956 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d 956 (1103)
.-. .+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .+
T Consensus 277 ni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 277 NIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred chH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCC
Confidence 100 00 133467877665 367899999887 22 1122333333 46789999999999985 67
Q ss_pred CeEEEEECCCceE------------EEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 957 THLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 957 ~~v~iwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
.++.|.|+.+.+. +.+... ...-...+|.++|....|-.-|..|..||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999987553 333222 33445678999998888888999999999987
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.9e-06 Score=89.37 Aligned_cols=258 Identities=15% Similarity=0.089 Sum_probs=177.2
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-CCceEEEeCC
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 473 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~ 473 (1103)
|...|+.+.-+ -.+++.+++-||.++.|.-..-..+.-...+..|...|.+++.+-|+. ++.|.+. |+.++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776655 578999999999999998765232333335678999999999999998 7888777 9999999987
Q ss_pred CCceeEEeecCCCceEEEEeeecCC-c--cEEEEEECCCeEEEEEcCCCCee--EEecCCCccEEEEEEccCCCEEEEEe
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKEN-I--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~-~--~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
.-..+..++-..-+ ..+.|..+++ - ..-++.-.+|.+.++|-....+. ..-..|..+|..+.+++-+..+++.-
T Consensus 85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 65544322211111 1112221211 1 23344456788999987655433 34456788999999999999888763
Q ss_pred cCCCCceeEEEEeCCC------CeeEEEEe------cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310 549 TSKEGESFLVEWNESE------GAIKRTYQ------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~------~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 616 (1103)
..|.|.-|.... .+..-.++ +....+....++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus 164 ----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 367799998762 11111111 11112366789999999999999999999999999998766544
Q ss_pred cCCC-------------------------------CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310 617 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 617 ~~~~-------------------------------~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
.... +...-..++|...|++|+.++-=| |++.++.++...+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 2110 111234678888999999988765 8999999987776553
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=2.9e-07 Score=92.06 Aligned_cols=168 Identities=16% Similarity=0.105 Sum_probs=128.3
Q ss_pred eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1103)
Q Consensus 338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 417 (1103)
+.++||-+-.-+-++.+.+..|-+-|+++|.... +. ..+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3347765433233555667889999999986442 22 56789999999999999999999
Q ss_pred CeEEEEEecCCCcc--ccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCce---eEEeecCCCceEEE
Q 001310 418 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1103)
Q Consensus 418 ~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~ 491 (1103)
|.|..+|+..+..- ... .---|...|+++..-. +++ +|.+.+.+|.|++||.+.-++ +++..||-..-..+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999875211 111 1225888999998776 555 788899999999999987776 88999998776666
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 529 (1103)
-++..+....+++++.|...|||.++.+....+++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 66667777789999999999999999888777665443
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=6.8e-05 Score=88.18 Aligned_cols=251 Identities=14% Similarity=0.167 Sum_probs=147.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE
Q 001310 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1103)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1103)
..|.++.|..+.+.++.+...|.|.+-|..+......-... ..|.+++||||++.++..+..+++.+.... -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 57999999999999999999999999988876554333322 348999999999999999998887765432 11110
Q ss_pred eccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEE
Q 001310 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 738 (1103)
Q Consensus 659 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~ 738 (1103)
....+. ...+.+....+|++...-.|. .....
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfr------------------------------------------gs~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFR------------------------------------------GSEGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeee------------------------------------------cchhh
Confidence 000000 000001111111111111110 00000
Q ss_pred EEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeecc-CCCCCCCCCeeEEEEecCCCEE
Q 001310 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYL 817 (1103)
Q Consensus 739 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~d~~~l 817 (1103)
..+.-+ ....+ +......+.-+.+.|--||+++
T Consensus 177 ~~~~~~----------------------------------------------~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 177 QAARQK----------------------------------------------IEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred hccccc----------------------------------------------ccccccccchhhccCCceEEEccCCcEE
Confidence 000000 00000 0000022333568899999999
Q ss_pred EEEc-----C-CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---ceeEEEeccC
Q 001310 818 FSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGH 885 (1103)
Q Consensus 818 ~~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h 885 (1103)
|+.. + ..|++||.+ |..-..-....+.-.+++|-| .|.++|+-. .|+.|.++.-+. |+....+...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 9853 4 679999987 544333333344557899999 888888753 455799987543 2223333434
Q ss_pred CCCEEEEEEccCCCEEEE---EeCCCeEEEEEcCCCceeeeeeeecC
Q 001310 886 SKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQTP 929 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s---~s~dg~I~iwd~~~~~~~~~~~~~~~ 929 (1103)
..+|..++|+.++..||+ ......|++|-+.+......+.+..+
T Consensus 289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~ 335 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS 335 (1265)
T ss_pred ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc
Confidence 455999999999999998 55556699999988665444444443
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.52 E-value=1.9e-05 Score=88.73 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=75.8
Q ss_pred EecCCCEEEEEcCCeEEEEEcCC-----ceeeEEecCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCcee-----
Q 001310 810 LSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV----- 878 (1103)
Q Consensus 810 ~s~d~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~----- 878 (1103)
+.++|++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 4557877665 467899999988 34444444 456678899999 7776655 45588999999987542
Q ss_pred -------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310 879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 879 -------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~ 917 (1103)
+.+.+--.+ -...+|.++|+...|..-|..|..||+..
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332222 34578999999999999999999999986
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=3.7e-06 Score=82.81 Aligned_cols=251 Identities=17% Similarity=0.222 Sum_probs=160.4
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc--cccceEecccc------------ccEEEEEEecCCCceEEEE
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHV------------GNVNDLAFSAPCKQISVIT 460 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~------------~~v~~~~~s~d~~~~~l~s 460 (1103)
....|+++.|...|.|||+|...|.|.+|.-+.... .+-...+.+|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 446799999999999999999999999997654321 12222344553 3588888887766556777
Q ss_pred EcCCCceEEEeCCCCc-------------------ee--------EEe----------------ecCCCceEEEEeeecC
Q 001310 461 CGDDKTIKVWDAVTGS-------------------RT--------YSF----------------EGHGAPVYSLCPHAKE 497 (1103)
Q Consensus 461 ~~~d~~i~iwd~~~~~-------------------~~--------~~~----------------~~~~~~v~~~~~~~~~ 497 (1103)
.+.|++|++|.+.... ++ ..+ ..|.--+.++.+. .
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N--s 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN--S 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--C
Confidence 7889999999864321 00 000 2355556677663 3
Q ss_pred CccEEEEEECCCeEEEEEcCCCCeeE---EecCCCc-----cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE-
Q 001310 498 NIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK- 568 (1103)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~- 568 (1103)
|.+.+++ +.|=.|.+|+++-..... .++.+.- -|++..|+|....++.-+. ..|.|.+-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4455555 456789999887544322 3333322 3778889996544433322 1556999998743210
Q ss_pred ---EE----Eec-----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCC----------CCC
Q 001310 569 ---RT----YQG-----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGL----------PEN 625 (1103)
Q Consensus 569 ---~~----~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~----------~~v 625 (1103)
.. +.+ ...-...|..+.|+++|+++++-+ --+++|||++. ..++.+++.|... ..|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 00 011 001125688899999998888755 36899999975 4567776554210 111
Q ss_pred ---ceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 626 ---PRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 626 ---~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
..+.||.|.+.+.+|+..+..-++-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 357889999999999998888887644
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.48 E-value=0.00019 Score=79.67 Aligned_cols=303 Identities=13% Similarity=0.104 Sum_probs=157.7
Q ss_pred ccCCCEEEEEecC-----CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 001310 538 SANGRRLFSCGTS-----KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1103)
Q Consensus 538 s~dg~~l~~~~~~-----~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (1103)
|||+++++..... .+..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 5788887764321 11245589999999876655444 3 5688889999999998886 57899999888744
Q ss_pred EEEEcCCCC----------------CCCCceEEEecCCCEEEEEECC-CeEEEEEcC---CCCeeEeccccccceeeeEE
Q 001310 613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 672 (1103)
Q Consensus 613 ~~~~~~~~~----------------~~~v~~v~~s~~g~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~i~~~~~ 672 (1103)
.+ +...+. ...-..+.|||||++|+....| ..+..+.+. .... ....+..+.+
T Consensus 76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 43 222210 1223678999999999876543 334333322 1110 0000111111
Q ss_pred ecCCceeeeeccCCceEecCCCCCCCccceeecccc--ccccccccccCCccceeeecc--CccccccEEEEEEecCCcE
Q 001310 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN--KSEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 748 (1103)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~ 748 (1103)
. ..|.... .+.++++..++.. .+..+ .......+..+.|.+++..
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 0111111 2333444332222 11111 1224567889999999984
Q ss_pred EEEeecC---ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe-cCCCEEEEEc--C
Q 001310 749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 822 (1103)
Q Consensus 749 l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~~~~--d 822 (1103)
+++.-.+ ..+.+. ..|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~--------------------~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLV--------------------LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEE--------------------EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEE--------------------EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4443322 222222 233333333222222111222233456665 7776666654 4
Q ss_pred C--eEEEEEcCCceeeEEecCCCCCeeE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEeccCCCCEEEEEEc
Q 001310 823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1103)
Q Consensus 823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1103)
| .|.+++...+. .+.+....-.|+. +.++++++.+.+++..++ .|+.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 46777776665 4455555566755 778884455555666533 66666777234455555443333689999
Q ss_pred cCCCEEEEE
Q 001310 896 DALNILVSS 904 (1103)
Q Consensus 896 ~dg~~l~s~ 904 (1103)
|+|++++-.
T Consensus 337 pdg~y~v~~ 345 (353)
T PF00930_consen 337 PDGKYYVDT 345 (353)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999988753
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=3.5e-06 Score=81.22 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCce-eEEEecc-CCCCEEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCceeeeeeee
Q 001310 855 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 927 (1103)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~ 927 (1103)
-+..++++..||.+.+.+.+.-. ...+... |.+. .+......++.+.+++ .-+..++|+++..+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-------- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-------- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence 45679999999999999877521 1111111 2221 1122222344444322 11235667666422
Q ss_pred cCCCcccCCCCceEEEEcCCCCEEEE-E-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEE
Q 001310 928 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus 928 ~~~~~~~~~~~v~~l~fs~dg~~l~~-~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~v 1004 (1103)
++.........|.+++-+|..+.+++ | .||.+.+||+++...+..++..|..+|+.+.|.| ++..|+|+++||.+--
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11111111125889999998777766 4 7899999999999888888889999999999998 6688999999999999
Q ss_pred EeCCCceeEEeecc---ccccCCCCCCC--ceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310 1005 HEASNLEVQCRILS---TAYLRPTTSHD--KILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus 1005 Wd~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
||..+--+-+.... +.|+...+-.. ..--+.......|.+..+. |..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~-----g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL-----GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc-----CceEEeccccceEEEec
Confidence 99886333221111 11111111000 0000111111122222222 67899999999999876
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.0013 Score=64.11 Aligned_cols=101 Identities=7% Similarity=-0.018 Sum_probs=71.4
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1103)
.+.+.-.|..+|+.+-..... ..+.+-+.- -|++++.|...|.+++.+..+|.....+...+... ......++
T Consensus 32 s~~~~avd~~sG~~~We~ilg----~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~~a~~d~~ 104 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILG----VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK--VRAQCDFD 104 (354)
T ss_pred CceEEEecCCCCcEEeehhhC----ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc--cceEEcCC
Confidence 445677788888765443221 223332222 36789999999999999999998877765543321 23456678
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310 634 GTLLAVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 634 g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
+.++..++.|++.+..|..+...+...+
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEecc
Confidence 9999999999999999998887776644
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=6.3e-07 Score=62.46 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1103)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd 914 (1103)
|+++.++.+|.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=4.1e-06 Score=94.59 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=132.9
Q ss_pred CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1103)
Q Consensus 813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1103)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344455555 677889999998888877655556666665 6789999999999999999999999999999999976
Q ss_pred EEEccCCCEEEEEeC---------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC--CEEEEEeCCeEE
Q 001310 892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA 960 (1103)
Q Consensus 892 l~~s~dg~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg--~~l~~~~d~~v~ 960 (1103)
+.. .|+.|+++|. |.-|+|||+..-+... +++.+.+ ..-+.|.|.- +..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 555 5899999985 4568999998744222 3333332 3456777753 334446889999
Q ss_pred EEECC---CceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310 961 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus 961 iwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
+-|.. +...-......-+..+..+++|++|..||.+..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 98843 22111112222355699999999999999999999999998
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.8e-05 Score=78.29 Aligned_cols=251 Identities=12% Similarity=0.148 Sum_probs=147.1
Q ss_pred eccCCCccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1103)
++.+|...|..++|||..+ +|..++.+..|+|.|+++..+.. .+..| ..+++++|.-|... +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78888999999999999976554 34456 78999999999876 8999999999999
Q ss_pred EeCCCCce-eEEeec--CCCceEEEEeeec----CCccEEEEEECCCeEEEEEcCCCCe--eEEecC-CCccEEEEEEcc
Q 001310 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDA-PGLGCTRMAYSA 539 (1103)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~~~~s~ 539 (1103)
||++..+- +..+.+ ...+|..++..+. +.+.+++..+.+ +..|.+..... ...... ..+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986543 222222 2334444432211 122344444333 34455433222 112222 234556666666
Q ss_pred CCCEEEEEecCCCCceeEE----EEeCCCCeeEEEEec-c---cccC-CceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001310 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQG-L---QLQH-NSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~~-~---~~~~-~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 609 (1103)
-.+.++...........++ --|..+|..+..-+. + ...+ ..-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566665544321111111 112223333322111 1 0000 01111222345566655 55778899999999
Q ss_pred CeeEEEEcCCCCCCCCceEEEec-C-CCEEEEEECCCeEEEEEcC
Q 001310 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1103)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-g~~l~~~~~dg~i~iw~~~ 652 (1103)
++.++++.... ++..++... + +.+|++-++ ..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence 99999998763 355555443 2 446666655 468887654
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.38 E-value=0.00011 Score=86.37 Aligned_cols=238 Identities=10% Similarity=0.194 Sum_probs=139.1
Q ss_pred cccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1103)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 813 (1103)
...|.++.|..++..++.+...|.+.+-|...... . +.. .-.+.|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~---------------e------ivg------~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL---------------E------IVG------NVDNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce---------------e------eee------eccCceEEEeecCC
Confidence 36899999999999999999999998865332211 0 000 15678999999999
Q ss_pred CCEEEEEcCCeEEEEEcCCceeeEEecCC-----CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-EEEeccCCC
Q 001310 814 DAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSK 887 (1103)
Q Consensus 814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~ 887 (1103)
++.++....+..-++...+...+....-+ .+....+-|-. .... +-| ..|....-+....+. .....-| +
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTq-frg-s~gr~~~~~~~~~ek~~~~~~~~-~ 196 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQ-FRG-SEGRQAARQKIEKEKALEQIEQD-D 196 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-ccee-eec-chhhhcccccccccccccchhhc-c
Confidence 99999988644444444444444332211 11112222211 0000 001 111111111110000 0111112 2
Q ss_pred CEEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCCe
Q 001310 888 RVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETH 958 (1103)
Q Consensus 888 ~V~~l~~s~dg~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~~ 958 (1103)
.=+.+.|--||.++|+.. ..+.|+|||-+ |.+... ..+.. +.-.+++|-|.|.++|+- +|+.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~---se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST---SEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc---cCccc-----ccccceeecCCCCeEeeeeecCCCCc
Confidence 235689999999999832 23789999988 442221 11111 134589999999999982 6677
Q ss_pred EEEEECCCceEEEEee---CCCCcCeEEEEEccCCCEEEE---EecCCcEEEEeCCCcee
Q 001310 959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEV 1012 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t---~~~dg~v~vWd~~~~~~ 1012 (1103)
|.+|.-+ |-....+. +....++..++|+.++..||+ ......|++|-+.+...
T Consensus 268 IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 268 IVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred EEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 9999865 33222211 112344999999999999987 44555599999988644
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.3e-07 Score=62.12 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.5
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd 363 (1103)
++++++.+|++.|++|+|+|++. ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46789999999999999999998 799999999999997
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.37 E-value=7.9e-05 Score=82.65 Aligned_cols=139 Identities=10% Similarity=0.079 Sum_probs=101.0
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
...|.--+++..++ +++.|+..|.+.+|+-.+|+..... ..+-.+.+..+..|++..++|+
T Consensus 33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAA 93 (726)
T ss_pred cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhh
Confidence 34666667777788 6899999999999999888765420 2234566777889999999999
Q ss_pred EeCCCeEEEEEecCCCccccceEe---ccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC----ceeEEeecCCC
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGA 486 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l---~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~ 486 (1103)
|+..|.|.|+-+..+........- ..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+....+
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 999999999988774332221111 23678999999999999 7999999999998887772 11233334455
Q ss_pred ceEEEEe
Q 001310 487 PVYSLCP 493 (1103)
Q Consensus 487 ~v~~~~~ 493 (1103)
.|..+..
T Consensus 172 ~IVQlD~ 178 (726)
T KOG3621|consen 172 EIVQLDY 178 (726)
T ss_pred ceEEeec
Confidence 6666654
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.37 E-value=0.00045 Score=76.63 Aligned_cols=291 Identities=15% Similarity=0.190 Sum_probs=148.5
Q ss_pred cCCCceEEEEE--------cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 343 spdg~~llasg--------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
|||++++|+.- +..+.+.|||+++++.... ......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 78998655522 1236788999988765431 1125678889999999999998
Q ss_pred eCCCeEEEEEecCCCccccceEecc-------c---------cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
. ++.|.+++..++...+. +..| - -+.-.++-|||||+++.++ --++..|..+.+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~-~~d~~~v~~~~~~----- 131 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL-RFDEREVPEYPLP----- 131 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE-EEE-TTS-EEEEE-----
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEE-EECCcCCceEEee-----
Confidence 5 56799999877643321 1222 0 1123568899999953222 2334455554421
Q ss_pred EEeecCCC---ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-Ee----cCCCccEEEEEEccCCCEEEEEecC
Q 001310 479 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 479 ~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~----~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
....... .+..+.+ |.+.... . .-.+.++|+.+++... .. .....-+..+.|+++++.++..-.+
T Consensus 132 -~~~~~~~~yp~~~~~~Y-Pk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 132 -DYSPPDSQYPEVESIRY-PKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp -EESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -ccCCccccCCccccccc-CCCCCcC-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 1111111 1222222 1111110 0 1135667887766532 22 2345568899999999955444433
Q ss_pred C-CCceeEEEEeCCCCeeEEEEecccccCCce---EEEEEc-CCCCEEEE-EeCCCc--EEEEECCCCeeEEEEcCCCCC
Q 001310 551 K-EGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHV--IKIWDMNKVQLLTTIDAGGGL 622 (1103)
Q Consensus 551 ~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 622 (1103)
+ .....+.+.|..+++......... ...| ....|. +++..++. ...+|- |++++...+... .+... .
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~ 279 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--D 279 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--S
T ss_pred cCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--c
Confidence 3 334567788988876644443322 1222 244444 66665555 445564 555666666533 33321 2
Q ss_pred CCCc-eEEEecCCCEEEEEECC-----CeEEEEEcCCCCeeEeccccccceeeeEEec
Q 001310 623 PENP-RICFNKNGTLLAVIANE-----NRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1103)
Q Consensus 623 ~~v~-~v~~s~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 674 (1103)
-.|. .+.++++++.+...+.. ..+...++..+..+..+.........+.++|
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP 337 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC
Confidence 2343 47788887766544332 2444445552233444433333224455553
No 330
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.35 E-value=1.3e-06 Score=82.72 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=96.1
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCC-CcCCcccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001310 38 MKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1103)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1103)
...++++|++||++.|+..+.... .+... ...+.|.|++|+|+|++..++..+|+.+.|+++.|......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 578899999999999999997642 22111 123889999999999999999999999999999766543556788888
Q ss_pred hhcccccccc--hhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcc-hHHHHHHHHHHHHHH
Q 001310 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1103)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 183 (1103)
.+|...+..+ ...+..+. ....|+.+.+.+.+.+-...- +| .+.|..++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 8888776554 22222221 236788888888876654222 33 456888888776544
No 331
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.9e-06 Score=85.39 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCcccccchhhh
Q 001310 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1103)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1103)
+.-+-|+|..||-.+||..+|..|-++|.+. .++...+++|++|+...|+...+.- ..+... ...+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~--~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE--ESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cchhhhH
Confidence 3457899999999999999999999999975 2478889999999999998887531 111111 2226699
Q ss_pred hhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccc
Q 001310 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1103)
Q Consensus 76 ~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 124 (1103)
++.|.|+||+..+++.+|+.+.++++.|....+...++....++.++..
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999987778888888888888644
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.2e-05 Score=78.04 Aligned_cols=250 Identities=13% Similarity=0.103 Sum_probs=141.5
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
.+.|.+|..-|..++|||..+-|+..++.+..|+|.|+++...+.. +..| ..+++++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4577899999999999999877889999999999999999877754 3335 7899999998
Q ss_pred CC-CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEE------ecCCCceEEEEEcCCCceEEEeCCC--Cce
Q 001310 407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 477 (1103)
Q Consensus 407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~------s~d~~~~~l~s~~~d~~i~iwd~~~--~~~ 477 (1103)
|. .+|..|..+|.|.|||+...+.......-.-...+|..++. .+-|. +++..+.+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 65 56677788999999999876533221111112234444433 23343 34444332 55666432 111
Q ss_pred eEEee-cCCCceEEEEeeecCCccEEEEEECCCe------EEE-EEcCCCCeeEEe-cCC-Cc------cEEEEEEccCC
Q 001310 478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG 541 (1103)
Q Consensus 478 ~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~dg 541 (1103)
...++ +..+...++..++..+ ..|++.-.+.+ +-. -|..++..+... ..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22121 1234444454443322 34444322110 000 011111111100 000 11 11123334566
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 001310 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
++++..+. ..+.+.+||..+++.++.+.... +|..++.. -++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66666543 36679999999999999887643 66665543 234444444456678887654
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.0022 Score=74.38 Aligned_cols=155 Identities=13% Similarity=0.166 Sum_probs=95.4
Q ss_pred EEEcCCCCCEEEEEeCCC------------------eEEEEEcCCceeEEEecc--CCC----CEEEEEEc----cCCC-
Q 001310 849 LAFNPHDNNVIAIGMDDS------------------TILIYNARSSEVISKLEG--HSK----RVTGLVFS----DALN- 899 (1103)
Q Consensus 849 l~~s~~d~~~lasg~~dg------------------~v~iwd~~~~~~~~~l~~--h~~----~V~~l~~s----~dg~- 899 (1103)
.++.+ .+..++.++.++ .|.-+|..+|+.+..+.. |.. ......+. -+|.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 455777777665 799999999998877642 211 00011111 1343
Q ss_pred --EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-------------------EeCCe
Q 001310 900 --ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------------VHETH 958 (1103)
Q Consensus 900 --~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-------------------~~d~~ 958 (1103)
.++.++.+|.+...|..+|+..-...... ..++.+| ..+.+ ..++.
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 57778889999999999998655332220 1122333 11211 13567
Q ss_pred EEEEECCCceEEEEeeCCC-C------cCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 959 LAIYEAEELTCLKQWFPIS-S------VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~~~h-~------~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+.-.|+.+|+.+.+...+. . .+...-.....+..|++++.||.|+.+|.++|+.+.+..
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 8888888888877643320 0 111111112356778888999999999999999998876
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.22 E-value=0.0042 Score=66.32 Aligned_cols=279 Identities=14% Similarity=0.128 Sum_probs=136.9
Q ss_pred EEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEECCCCCEEEEEeC
Q 001310 340 MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 416 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~las~~~ 416 (1103)
=+|.+||++||.++..|| .+.+.|+.+++... |.... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 368999998888887766 46677788876553 22222 11224667899998877766
Q ss_pred CCeEEEEEecCCCccccceEeccccccEEEEEEe--cCCCceEEEEEc----------------------CCCceEEEeC
Q 001310 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 472 (1103)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~ 472 (1103)
...|+--|+.+.+... .+......+-...|. .|+. .++..- ....|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 6788888998875322 233344444445553 4455 333221 1223555577
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEEC---CCe-EEEEEcCCCCeeE-Eec--CCCccEEEEEEccCCCEEE
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYD--APGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~-~~~--~~~~~i~~~~~s~dg~~l~ 545 (1103)
.+|+....+. -...+..+.++|.. ..+|..|-+ +.. -|||-+++..... .+. .....+..=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7776544443 45566677777653 234444322 221 3667665433222 221 1223455566899999887
Q ss_pred EEec-CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001310 546 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN 608 (1103)
Q Consensus 546 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~ 608 (1103)
..+. .+..+..|.-+|+.+++....... .....+..++||+.++-=+.| .-|+++++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 6544 334466788899998876443332 233455567888877662222 256778888
Q ss_pred CCeeEEEEcCC--------CCCCCCceEEEecCCCEEEEEEC-CCeEEEEE
Q 001310 609 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1103)
Q Consensus 609 ~~~~~~~~~~~--------~~~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~ 650 (1103)
.+......... .....-....|+|||++++..++ .|...||-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 77654222110 01112357899999998877665 56655553
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=7.8e-05 Score=83.79 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=129.1
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeee
Q 001310 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~ 923 (1103)
..+.|++++ +++++.|+.+|.|++++... .. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777775 47999999999999999773 33 444446543 56799999999999999999988664332
Q ss_pred eeeecCCCcccCCCCceEEEEcCC-----CCEEEEEeCCeEEEEECCC-ceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~fs~d-----g~~l~~~~d~~v~iwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
..++ .++.+++++|| .+.+++|+...+.++.-.= |...........++|.++.|. |.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 2222 26889999998 5666775443377776431 111111233347899999986 67888887
Q ss_pred cCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 998 ~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
++| |+|||+.+++.+..+.+..-.+ ....++-.+.|.++ ..|+.| ...+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~---------------R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV---------------RPELFPPHLHWQDE--DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC---------------CcccCCCceEecCC--CeEEEe-cCCeEEEEEEe
Confidence 666 9999999999998888555222 12244556777765 566654 56678888876
No 336
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=4.9e-05 Score=86.28 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=141.9
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1103)
.++.|+....+..+|+.+++..+......+.|.-++. +++++.+|...|+|.+-|..+.+...++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 5778888888999999999988877666656666654 668999999999999999999999999999999885 4
Q ss_pred EccCCCEEEEEecCCC-----CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001310 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~- 609 (1103)
|+-.|+.|++|+.+.. .|..|.+||+++.+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 5667899999987542 36779999999888777666554 22 44567776 35677788899999988332
Q ss_pred Cee-EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
+.+ ......+...+.+..+.++++|+.++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1222222223458899999999999999999999999843
No 337
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=7.8e-06 Score=82.08 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=104.1
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
..+.+. .++.|.+++|...+. ++..|...|.|...|+..+.+=. .| ... ---|...|+++..-
T Consensus 245 ~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~-----~~---------~a~-rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 245 HQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN-----GW---------CAQ-RLYHDSSVTSLQIL 307 (425)
T ss_pred cccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC-----Cc---------ceE-EEEcCcchhhhhhh
Confidence 334444 456899999999887 89999999999999997651110 00 000 11288999999988
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
. ++.+|.+.+.+|.|++||..--++-+......||...-..+-+.-+...-.+++++.|...|||.+..|..+.++...
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7 889999999999999999987666444557788876554444432222227889999999999999999999887643
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0046 Score=71.72 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=79.7
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCc------cE--EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GC--TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i--~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
..++.++.++.+.-.|..+++.......... .+ ..+++. ++..++.+.. ++.|+.+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3566777788888888888887766544332 00 011111 2245555543 567999999999988777
Q ss_pred eccccc--CCceE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeEEEEcCCCCC-----------------
Q 001310 572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGL----------------- 622 (1103)
Q Consensus 572 ~~~~~~--~~~v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~----------------- 622 (1103)
...... ...+. ...+. +..++.++ .+|.++-+|..+|+.+-........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 653310 00011 11121 24455554 3678999999999988776542110
Q ss_pred -CCC-ceEEEecCCCEEEEEECCC
Q 001310 623 -PEN-PRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 623 -~~v-~~v~~s~~g~~l~~~~~dg 644 (1103)
..+ ...++.+.+..+++++.++
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCC
Confidence 001 1345555567777777665
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00072 Score=76.93 Aligned_cols=202 Identities=11% Similarity=0.115 Sum_probs=129.9
Q ss_pred EecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCcc-EEEEEECCCCCEEEEEeCCC-
Q 001310 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLGVAYSKH- 418 (1103)
Q Consensus 341 ~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~spdg~~las~~~d~- 418 (1103)
+|++.+. .+|.|+.+|.|.+.+-.- +.++. +..+... |..+-.-.+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~-~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF-QLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc-eeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 4677776 689999999988887321 11121 3345555 44444444446777776554
Q ss_pred ----eEEEEEecCCCccc---cc--eEecc-----ccccEEEEEEecCCCceEEEEEcCCCceEEEeCC----CCceeEE
Q 001310 419 ----IVQLYAYHGGSDAR---QQ--LEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV----TGSRTYS 480 (1103)
Q Consensus 419 ----~i~iwd~~~~~~~~---~~--~~l~~-----h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~----~~~~~~~ 480 (1103)
.++||+++.-+.-. .. ..+.+ ...++.+++.+.+-+ .+|.|-.+|.|..+.-+ .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 59999987432111 00 01222 345789999999977 79999999999888421 2222222
Q ss_pred eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
......+|+.+++.. ++..++.+..-..|.+|.+....... ....++....|.++++....+++++ ...+++
T Consensus 167 ~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 334567899999854 44444455556678999988665333 4777888899999988777677665 345999
Q ss_pred EeCCCCeeEEEEe
Q 001310 560 WNESEGAIKRTYQ 572 (1103)
Q Consensus 560 wd~~~~~~~~~~~ 572 (1103)
|+......--.+.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9987655555555
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00041 Score=78.25 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=124.6
Q ss_pred cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1103)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 815 (1103)
.+.+.+++ ++.++.|+.+|.+++++.+.... +.. .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------~~~----------~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------TNF----------DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------ccc----------ccccc------ccCCc
Confidence 34444443 56788899999999987654310 000 02221 56899
Q ss_pred EEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC----CCCEEEEEeCCCeEEEEEcCC-ce-eEEEeccCCCC
Q 001310 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-SE-VISKLEGHSKR 888 (1103)
Q Consensus 816 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~-~~-~~~~l~~h~~~ 888 (1103)
++++++ ||+|.|-.+-+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.= |. ....+..-.|+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999998 7999999988887776665 5578999999993 256888899888 77775331 11 11134556789
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001310 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1103)
Q Consensus 889 V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~ 965 (1103)
|.++.|. |+++|-++.+| |+++|+..++.... ++.+........-...+.|.++.+ |++|-..+|.|..+.
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999999998 99999998775442 222222211112345677777655 556655677777776
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0024 Score=65.12 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=113.6
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+.|.+-.++++.++|.|+.++|+|+....+.|...+. +|+.+++.. +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 5667777789999999997778999999999999996 477776533 333 356788999988
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccc-----eEec---cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC---Cc
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~l~---~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~ 476 (1103)
+.++++.-.++.+.+.++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888887767899999998443211111 1111 24456899999999884 44455555555665443 22
Q ss_pred eeEEe--------ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---------ccEEEEEEcc
Q 001310 477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1103)
Q Consensus 477 ~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 539 (1103)
.+... ......+.++++++. .+++++....+..|..+| ..++....+.... .....|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 123345788888865 567888888888899998 4444444333222 2467899999
Q ss_pred CCCEEEEE
Q 001310 540 NGRRLFSC 547 (1103)
Q Consensus 540 dg~~l~~~ 547 (1103)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99777665
No 342
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00046 Score=78.42 Aligned_cols=203 Identities=11% Similarity=0.104 Sum_probs=136.0
Q ss_pred EEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCC-eeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc----
Q 001310 808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 876 (1103)
Q Consensus 808 l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 876 (1103)
-++++.+..++.|+ +|.|.+.+-. .+.++.++.+... |+.+-... +..+|++.+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888888887 7888777643 4555777777766 44454443 556888877765 5899998742
Q ss_pred --eeE--EEecc-----CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 877 --~~~--~~l~~-----h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
.++ ..+.. ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+. .+|+.++|..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 346788999999999999999999998885442111111111122222 37999999999
Q ss_pred CCE-EEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 948 g~~-l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
++. +.++.-..|.+|.+............|+..+.+..|++-...+++++ +..+.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 988 44567778999999844423334667788899999987655455554 4579999988555443333
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00097 Score=74.34 Aligned_cols=199 Identities=12% Similarity=0.117 Sum_probs=119.0
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceee
Q 001310 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1103)
Q Consensus 625 v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1103)
+.--+++..+++++.|+..|.+++|+...+.......
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------------------------- 72 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------------------------- 72 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------
Confidence 4455667789999999999999999877663321110
Q ss_pred ccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeec
Q 001310 705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784 (1103)
Q Consensus 705 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 784 (1103)
.+..+.+....++++..++++++..|.|.++.++.... +..
T Consensus 73 --------------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~------------ 113 (726)
T KOG3621|consen 73 --------------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDL------------ 113 (726)
T ss_pred --------------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Ccc------------
Confidence 01223455667788888888899999999988765211 100
Q ss_pred CCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCc----eeeEEecCCCCCeeEEEEcCCCCCEE
Q 001310 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVI 859 (1103)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~l 859 (1103)
...... ...|...|++++|++|+..+.+|. .|+|.+-.+.+. -..+.+......|..+.+.. +.+|
T Consensus 114 ------~~~t~~-d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LL 184 (726)
T KOG3621|consen 114 ------DYVTPC-DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLL 184 (726)
T ss_pred ------eeeccc-cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceeh
Confidence 011111 113789999999999999999998 499888887762 11233444567787887763 4455
Q ss_pred EEEeCCCeEEEEEcCCce--eEEEeccCCCCEEEEEEccC----CCEEEEEeCCCeEEEEEcCC
Q 001310 860 AIGMDDSTILIYNARSSE--VISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 860 asg~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d----g~~l~s~s~dg~I~iwd~~~ 917 (1103)
++...- -.+++.+.++ .+..-....-.-...+|-|. .+-.+.++.-| .++|..+-
T Consensus 185 VStl~r--~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 185 VSTLTR--CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred Hhhhhh--hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 443332 2344444332 11111111101223344443 34455566666 78887763
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.95 E-value=0.01 Score=63.46 Aligned_cols=229 Identities=12% Similarity=0.050 Sum_probs=113.9
Q ss_pred EEECCCCCEEEEEeC-C--CeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310 402 VVWSPDGSLLGVAYS-K--HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 402 ~~~spdg~~las~~~-d--~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
=+|.+||+.|+.++. + ..+.+-|+.+++..+ |..+. .......++|+++ .++-......|+--|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367899988887665 4 467888888876443 33322 2222466778888 454444556888999999887
Q ss_pred eEEeecCCCceEEEEeeecCCccEEEEEEC----------------------CCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1103)
...+......+-...+..+.++..++..-. ...|...|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666666677776666766667666554321 1234445666655544443 44567788
Q ss_pred EEccCCC-EEEEEecCCCC--ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-----CCCcEEEEEC
Q 001310 536 AYSANGR-RLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 607 (1103)
Q Consensus 536 ~~s~dg~-~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~ 607 (1103)
.|+|... .|+.|....-. +.+|.+.+.. |...+.+..+. ....+..=.|.|||..+..-+ .+..|.-+|+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999544 45555532211 2235444533 33334443333 123455567899998876632 3446777888
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1103)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 643 (1103)
.+++.......+ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887665433322 23455567889887765544
No 345
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.95 E-value=5.1e-06 Score=63.90 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.0
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCH
Q 001310 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1103)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~ 90 (1103)
++..++++|++|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 467899999999999999999876332222222 48999999999999998764
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.95 E-value=0.018 Score=65.89 Aligned_cols=253 Identities=14% Similarity=0.083 Sum_probs=138.4
Q ss_pred CceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.+...++||||++++.+-+..| .+++.|+++|+.+.. .+ . ......++|++|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~--~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------E--NPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------E--EEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------c--ccccceEEEeCCCCEE
Confidence 3446789999997665544444 599999999976643 11 0 1112239999998887
Q ss_pred EEEeCC-----------CeEEEEEecCCCccccceEecccccc--EEEEEEecCCCceEEEEEcCC--CceEEEeCCCC-
Q 001310 412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 475 (1103)
Q Consensus 412 as~~~d-----------~~i~iwd~~~~~~~~~~~~l~~h~~~--v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~- 475 (1103)
.....+ ..|+.|.+.++..-. ...+.+.... ...+..++|++.+++.+.+.. ..+.+-|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 766432 237777776654221 1234443332 568889999996333333322 35778888775
Q ss_pred ---ceeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCCCEEEE
Q 001310 476 ---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 476 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
.....+......+....-+. ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23344433333333322221 333443332 335677777777653 2244444443333334445666665
Q ss_pred EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCeeEE
Q 001310 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT 614 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 614 (1103)
... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++...
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 543 3457789999998455555555444 355666666666665544 22 34678888998887643
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00069 Score=74.53 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=83.3
Q ss_pred CCCeeEEEEecC-CCEEEEEc-----CCe----EEEEEcCCceeeEE---ecCCCCCeeEEEEcCCCCCEEEEEeCCCeE
Q 001310 802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1103)
Q Consensus 802 ~~~v~~l~~s~d-~~~l~~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1103)
.....++.||.. ...+.+.. +|. ..+|++...+..+. -......+.+.+++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 344566777763 33443332 232 56777765543221 123667899999999 88999999999999
Q ss_pred EEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1103)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~ 919 (1103)
.+||...+... +..+.-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99998876432 33345567889999999999999999999999998644
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00078 Score=75.10 Aligned_cols=198 Identities=18% Similarity=0.156 Sum_probs=119.2
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCC---CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1103)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+++++.....+ + .+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccC
Confidence 445566666666888889999998754443332 359999999987665422 2 23334
Q ss_pred EEEECCCCCEEEEEe-CCCe--EEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--eEEEeCCCC
Q 001310 401 RVVWSPDGSLLGVAY-SKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1103)
Q Consensus 401 ~~~~spdg~~las~~-~d~~--i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~ 475 (1103)
.-+|||||++||.+. .||. |.+.|+.++.. . .+..-.+.-+.=.|+|||+. ++++.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~---~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-P---RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-e---ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 568999999998774 4554 67778777652 2 23333333336789999997 3444555554 566676655
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECC-Ce--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
.. ..+......-. ...+++||.+++..+.. |. |.+.|+.+... ..............+.++|+.+...+..
T Consensus 317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 54 33322221111 33346788888877743 44 55555555443 2222223334456788899988876653
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.86 E-value=0.055 Score=63.04 Aligned_cols=149 Identities=9% Similarity=0.096 Sum_probs=90.1
Q ss_pred eEEEEEcCCceeEEEeccCCCCEEE---------EEEccCCC---EEEEEeCCCeEEEEEcCCCceeeee------ee--
Q 001310 867 TILIYNARSSEVISKLEGHSKRVTG---------LVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCR------SL-- 926 (1103)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg~---~l~s~s~dg~I~iwd~~~~~~~~~~------~~-- 926 (1103)
.|.-.|++||+....++.....+.. +.+-.+|+ .++.+..+|.+++.|-.+|+..... ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 6777899999988777652211111 22224665 7889999999999999999864210 00
Q ss_pred --ecCCCcc------------cC------C---CC--ceEEEEcCCCCEEEE-Ee-------------------------
Q 001310 927 --QTPDGVM------------TL------A---PS--ETHIQFHKDQTRFLL-VH------------------------- 955 (1103)
Q Consensus 927 --~~~~~~~------------~~------~---~~--v~~l~fs~dg~~l~~-~~------------------------- 955 (1103)
....+.. .. . +. =..++++|+..++.+ ..
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0000000 00 0 00 022667776666654 11
Q ss_pred --------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 956 --------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
-+.|.-+|+.+|+.+.+.... .+...-.....+..+++++.||.++.+|.+||+.+.++.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~--~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKED--FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCC--CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 135888899999887764322 121111122355567778889999999999999998777
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.03 Score=62.16 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=69.0
Q ss_pred EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001310 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1103)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 636 (1103)
-.+|+....+..+.-...-.....+.+++++|+...++.|+.||+|.+||...+..... .. .-....++|+|+|..
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka---~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA---EFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee---cccceEEEEcCCCcE
Confidence 34566655433222111111236899999999999999999999999999887644433 21 123578999999999
Q ss_pred EEEEECCCeEEEEEcCCC
Q 001310 637 LAVIANENRIKILETPES 654 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~~ 654 (1103)
+++|+..|.+.+||..-.
T Consensus 314 ~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCceEEEEEeecC
Confidence 999999999999998754
No 351
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.82 E-value=2.9e-05 Score=47.66 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001310 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1103)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1103)
+++.+||+.||.+.||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999996
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0046 Score=68.34 Aligned_cols=255 Identities=14% Similarity=0.129 Sum_probs=135.5
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeee------ee------------eeeEeeccccc------cceeeee
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL 391 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~ 391 (1103)
.|+++.|+++... ||+|...|.|.||.+...+.-. .. .-.+-|++... ......+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999763 7889999999999875432221 00 12233443211 1233445
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEecc------ccccEEEEEEec-----CC-CceEEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI 459 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~v~~~~~s~-----d~-~~~~l~ 459 (1103)
+....++|++++.| |=-++|.|+.+|.+.|.|+.+...+.. ..+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 667999999999999999977654432 12222 334688888862 22 225788
Q ss_pred EEcCCCceEEEeCC--C-Ccee----EEeecCCCceEEEEeeecCCc-------------------cEEEEEECCCeEEE
Q 001310 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1103)
Q Consensus 460 s~~~d~~i~iwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 513 (1103)
.|...|.+.+|.+. . +.-. .....+.++|..+.......| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2111 112246677777664321111 12444555778999
Q ss_pred EEcCCCCeeEEecCCCccEEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc-cCCceEEEEEc
Q 001310 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 587 (1103)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 587 (1103)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+..+.-... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777665554332344445553 34556666654 66699999998888777665320 11223445566
Q ss_pred CCCCEEEEEe
Q 001310 588 TAKDQILAAG 597 (1103)
Q Consensus 588 ~~~~~l~~~~ 597 (1103)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666554443
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.82 E-value=0.0049 Score=71.95 Aligned_cols=210 Identities=14% Similarity=0.095 Sum_probs=118.2
Q ss_pred CCeeEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC-CeEEEE-
Q 001310 844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVW- 913 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g~I~iw- 913 (1103)
..+.+.++|| +++.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 777766654 243 55555642 3332223332 37788999999988877533 223333
Q ss_pred ----------EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEE---EECCCceEEE----EeeCC
Q 001310 914 ----------DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPI 976 (1103)
Q Consensus 914 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~i---wd~~~~~~~~----~~~~~ 976 (1103)
+++.++... ...+.|..+.|||||+.+|...+++|++ -....|+... .+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 333322110 1123699999999999999976788888 5555665111 11222
Q ss_pred CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC-ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCc
Q 001310 977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPT 1055 (1103)
Q Consensus 977 h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1055 (1103)
-...+.++.|..++.++ ++..++...+|.+.- |.....+. .. .....+ .+++.+|.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~~----------------n~~~~v--~~vaa~~~--- 551 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-SR----------------NLSAPV--VAVAASPS--- 551 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccC-CC----------------CccCce--EEEecCCc---
Confidence 23446889999999854 555555555565432 22111101 00 011223 34555543
Q ss_pred EEEEEecCCcEEEEccCCCCCCCccCCccccccCCC
Q 001310 1056 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQP 1091 (1103)
Q Consensus 1056 ~l~~~~~dg~v~vw~~~~~~~~w~~~~~~~~~~~~~ 1091 (1103)
.++.+..+|.+.+=.-...+..|...|........+
T Consensus 552 ~iyv~~~~g~~~l~~~~~~~~~W~ev~~l~g~~~~p 587 (591)
T PRK13616 552 TVYVTDARAVLQLPNSDSGDQYWREVPGLMGPRAAP 587 (591)
T ss_pred eEEEEcCCceEEecCCCCCCCCceECccccCCCccc
Confidence 466666677444333344456888777776655543
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.82 E-value=0.13 Score=60.08 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.1
Q ss_pred CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC
Q 001310 823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1103)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1103)
|.+.-+|+.+++...+.........+.... .+.+++.++.+|.++.+|..+|+.+..++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568888999998887765333222222222 3447777888999999999999999887643
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.01 Score=66.36 Aligned_cols=208 Identities=13% Similarity=0.150 Sum_probs=146.4
Q ss_pred CCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeC---CCeEEEEEcCCce
Q 001310 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSE 877 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~ 877 (1103)
.....+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++++.+.|..+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3445778888888555554 5889999988777776655332 667899999 6655555544 6899999999988
Q ss_pred eEEEeccCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--
Q 001310 878 VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 954 (1103)
Q Consensus 878 ~~~~l~~h~~~V~~l~~s~dg~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-- 954 (1103)
.......-..+ ..++++|+|+.+... ..++.|.+.|........ .. .............+.++|+|.++.+.
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEec
Confidence 87775433334 889999999965554 478999999977754321 11 00011111246789999999988774
Q ss_pred eC--CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310 955 HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 955 ~d--~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.+ +.+...|..++.........-......+.++|+|+++.+.. ..+.+.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 58999999988877652222111556789999999988874 44889999999988876655
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0028 Score=70.75 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=111.3
Q ss_pred eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe---CC-CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC
Q 001310 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1103)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 899 (1103)
.+.+-|.. +...+.+......+..-+|+| +++.++... .. ..++++++.+++....+. ..+.-..-+|||||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34445554 555566665666778888999 666655442 22 469999999886544443 223334578999998
Q ss_pred EEEEE-eCCCe--EEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC----eEEEEECCCceEEEE
Q 001310 900 ILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 972 (1103)
Q Consensus 900 ~l~s~-s~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----~v~iwd~~~~~~~~~ 972 (1103)
.|+.+ ..||. |.+.|+.++.... +....+ .-+.-.|||||++|+-.+|. .|++++.+.+.....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee---cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 87755 45665 6666777655211 222222 23467899999999985443 588888887765433
Q ss_pred eeCCCCcCeEEEEEccCCCEEEEEecC-Cc--EEEEeCCCcee
Q 001310 973 WFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1012 (1103)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~~~d-g~--v~vWd~~~~~~ 1012 (1103)
...+ +.-..-.+||||++++..+.. |. |.+.|+.++..
T Consensus 322 T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 322 TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 2322 222277899999998877643 44 77777776664
No 357
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.77 E-value=3.6e-05 Score=51.47 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001310 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1103)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~ 35 (1103)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.01 Score=65.71 Aligned_cols=241 Identities=13% Similarity=0.085 Sum_probs=136.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccc----------------------------------------cceEe
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR----------------------------------------QQLEI 437 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~----------------------------------------~~~~l 437 (1103)
.|+++.|+++..-||+|...|.|.||.+...+... +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999875432211 11123
Q ss_pred ccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe--ec------CCCceEEEEeee---cCCc---cEEE
Q 001310 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EG------HGAPVYSLCPHA---KENI---HFIF 503 (1103)
Q Consensus 438 ~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~------~~~~v~~~~~~~---~~~~---~~l~ 503 (1103)
....++|++++.|.=| +++.|..+|.+.|.|++....++.- .. ....|+++.|.. ..|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999998666 7999999999999999888877652 22 234577776652 3333 4788
Q ss_pred EEECCCeEEEEEcCC-CCeeE------EecCCCccEEEEE-EccC---------------------CCEEEEEecCCCCc
Q 001310 504 SISVDGKIKAWLYDS-LGARV------DYDAPGLGCTRMA-YSAN---------------------GRRLFSCGTSKEGE 554 (1103)
Q Consensus 504 s~~~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~d---------------------g~~l~~~~~~~~~~ 554 (1103)
+|...|.+.+|.+.. ..... ....+..++..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 11111 1113344444444 3222 11444444 3
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEc-----CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC--CCCCce
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPR 627 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 627 (1103)
..++++...+.+...+..... .....+.+- ..+..|++-..+|.|+++.+..-+.+........ ...+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~---~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDP---FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cceEEEeCCCCcccceeeccc---cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 348999888777665544221 122333342 3466778888999999999999988888776421 112456
Q ss_pred EEEecCCCEEEEEECCCeEEEEE
Q 001310 628 ICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
.+++++|..++..+. ..+.++.
T Consensus 312 ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 312 SSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp -EE-TTS-EEEE-SS-SEEEEEE
T ss_pred cEECCCCCEEEEeCc-ccEEEEE
Confidence 778888886665544 3444443
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.015 Score=59.45 Aligned_cols=201 Identities=11% Similarity=0.075 Sum_probs=111.5
Q ss_pred CCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310 801 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1103)
-...++.+++.|+...|++.. .+.|...+. +|+.++++.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 555699999999877666655 367877786 57888877543 35778899987 67676666568999999884321
Q ss_pred ------eEEEec-----cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC---CceeeeeeeecCCCcccCCCCceEEE
Q 001310 878 ------VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 878 ------~~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
....+. .+...+-.++|.|.++.|..+-+..-..++.+.. .....................+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 112221 2455689999999988888777776677777654 11111111111110011112578999
Q ss_pred EcCCCCEEEE-E-eCCeEEEEECCCceEEEEee--CCC------CcCeEEEEEccCCCEEEEEecCCcEEEE
Q 001310 944 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWF--PIS------SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus 944 fs~dg~~l~~-~-~d~~v~iwd~~~~~~~~~~~--~~h------~~~v~~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
+.|....|.+ + .+..|..+| .+|+.+..+. .+. -...=.|+|.++|++.++ ++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9998766555 5 567899999 5577665432 211 124567999999976665 566666654
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.0056 Score=68.59 Aligned_cols=222 Identities=10% Similarity=0.067 Sum_probs=118.2
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.-
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKN 96 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEET
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEc
Confidence 3345567889999999999995 6777788873221 21 1234456788998665 666666888999743
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
-+.+....++.. ..+..+.. |.+|...+. +.|.+||+.+++....+... +|..+.|+++|.+++..+.+
T Consensus 97 ~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-- 165 (443)
T PF04053_consen 97 FKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-- 165 (443)
T ss_dssp TEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S---
T ss_pred CccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC--
Confidence 333333333321 12333321 455555554 48999999999888877754 48899999999999998742
Q ss_pred CceeEEEEeCCCC-----------eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCC
Q 001310 553 GESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG 619 (1103)
Q Consensus 553 ~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 619 (1103)
.+++++.... .....+.... ..|.+..|..+ .++-.+.. .++. +-.|+. +..+.
T Consensus 166 ---~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld-- 232 (443)
T PF04053_consen 166 ---SIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD-- 232 (443)
T ss_dssp ---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S--
T ss_pred ---eEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC--
Confidence 3666654332 0222222212 56788888765 44444444 6665 333433 33332
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
.++.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ---KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ---S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ---CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2356777888778888888888888887763
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0076 Score=71.21 Aligned_cols=212 Identities=11% Similarity=0.033 Sum_probs=127.0
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEcc-----CCCEEEEEeCCCeEEEEEcCCCceeeeeeee
Q 001310 855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1103)
Q Consensus 855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 927 (1103)
+.++|+.. .....|+-.|+.+|+.+..+..|... |..++-.. +..--..|-.+..+..||..-.. ..++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 44554443 34578999999999999999987754 55544321 12233456667779999987532 11221
Q ss_pred cCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 928 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 928 ~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
............+|++-+.+|...+.+.+|.|++||- .|..-.+.+++-+.+|.+|..+.||+++++.+ +..+.+++.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1111111223578888888888777779999999994 45555566777789999999999999988554 678889887
Q ss_pred C--CceeEEeeccccccCC-CCCCCceeeEeecc--------CCceeeEEEEECC--CCCcEEEEEecCCcEEEEcc
Q 001310 1008 S--NLEVQCRILSTAYLRP-TTSHDKILCFCYCS--------CLHVYPHAIAAHP--LKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1008 ~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~v~~~~~~~~p--~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
. .|+-..........+. .....+.+.+...| +.++.=....|+- +.....++++....+.+|++
T Consensus 647 ~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf 723 (794)
T PF08553_consen 647 LIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNF 723 (794)
T ss_pred eeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEH
Confidence 4 3322222222222221 11223444443222 2333222334431 11234444566778999996
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.016 Score=65.23 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred EEEecCCCEEEEEcCC------------eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310 808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 808 l~~s~d~~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1103)
++.+|.|-.+|...+. .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence 4556666666655433 58899875 666666554448999999997 44 55567789999999987
Q ss_pred cee-------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC--CCCceE-EEEc
Q 001310 876 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL--APSETH-IQFH 945 (1103)
Q Consensus 876 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~-l~fs 945 (1103)
|+. +....-....+....+..+|-.+. ..++.+.+-+--............+...... ...... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 333 111111222233334444563333 3444444332222111100000111110000 001111 3355
Q ss_pred CCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 946 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 946 ~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.+....+. ..++.+.+.+....+. . ...+++..+++||+|+++|.-..+|.+.|...+-.+..+.+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 55554444 4555666444332211 1 124689999999999999999999999999877666666665
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0052 Score=68.84 Aligned_cols=219 Identities=13% Similarity=0.143 Sum_probs=116.5
Q ss_pred EEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCE
Q 001310 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1103)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 816 (1103)
...+.++|+|+.+++ +.+|...++...... . ...+.-..++|.+.+++
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r-----------------------~--------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-----------------------N--------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTE-----------------------E--------EEEEE-SEEEE-TSSEE
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCc-----------------------c--------cccCceeEEEEecCccE
Confidence 568899999998887 556666666521100 0 02234456889887775
Q ss_pred EEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEcc
Q 001310 817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1103)
Q Consensus 817 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 896 (1103)
.+.-..++|.|+.--+.+....+... ..+..+-. |.+|+..+.+ .|.+||..+++.+.++... +|..+.||+
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence 55555788999744333333344322 22333332 6677777655 8999999999999998843 389999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC---------ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001310 897 ALNILVSSGGDAQIFVWDVDGW---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1103)
Q Consensus 897 dg~~l~s~s~dg~I~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~ 967 (1103)
+|.++|..+.+. +.|++.+.. -......+.... ..|.+.+|..| -++.+... +++-+- .|
T Consensus 155 ~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiYtT~~-~lkYl~--~G 223 (443)
T PF04053_consen 155 DGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIYTTSN-HLKYLV--NG 223 (443)
T ss_dssp TSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TT-EEEEEE--TT
T ss_pred CCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEEEcCC-eEEEEE--cC
Confidence 999999988765 778776543 000112222211 25788888877 33333333 666633 33
Q ss_pred eE--EEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310 968 TC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 968 ~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
+. +.. + ..++.-+.+.+....+.....|+.|..+.+...
T Consensus 224 e~~~i~~-l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 224 ETGIIAH-L---DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CcceEEE-c---CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 33 222 1 446666777787778888888888888877643
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.012 Score=58.61 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=123.5
Q ss_pred EEEEecCCC-EEEEEc-CCe-EEEEEcCCceeeEEecCCCC--CeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCc
Q 001310 807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 876 (1103)
Q Consensus 807 ~l~~s~d~~-~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~ 876 (1103)
.++++|--. -++.+- -|+ ..++|....+.+.++....+ ---.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 567777643 344443 355 67899988887776654332 123347999 89888875443 79999999854
Q ss_pred -eeEEEeccCCCCEEEEEEccCCCEEEEEeCC------------------CeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310 877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGD------------------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1103)
Q Consensus 877 -~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1103)
+.+..+..|.-.-..+.+.+||+.|+.+... -.+.+.|-.+|.+.....+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 5667788887777889999999999876431 0133333333333222222211111 3
Q ss_pred CceEEEEcCCCCEEEEE-eCC-----eEEEEECCCceEEEEeeCC------CCcCeEEEEEccCCCEEE-EEecCCcEEE
Q 001310 938 SETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVF-TSFVDGTLSI 1004 (1103)
Q Consensus 938 ~v~~l~fs~dg~~l~~~-~d~-----~v~iwd~~~~~~~~~~~~~------h~~~v~~l~fs~dg~~l~-t~~~dg~v~v 1004 (1103)
++..++.-+||..++.+ ..| -..+=-...|+.+.-+-.. -...|-+++..-+..+++ |+-..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 68889999999887763 111 1111111223322211111 145677788776555554 4445667889
Q ss_pred EeCCCceeEEeec
Q 001310 1005 HEASNLEVQCRIL 1017 (1103)
Q Consensus 1005 Wd~~~~~~~~~~~ 1017 (1103)
||..+|.++..-.
T Consensus 307 ~da~tG~vv~~a~ 319 (366)
T COG3490 307 WDAATGAVVSEAA 319 (366)
T ss_pred EEcCCCcEEeccc
Confidence 9999999874443
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.03 Score=55.87 Aligned_cols=256 Identities=16% Similarity=0.150 Sum_probs=142.5
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcC
Q 001310 580 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 652 (1103)
Q Consensus 580 ~v~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----g~i~iw~~~ 652 (1103)
.-..++|+|...+ ++.+-.-|+ ..++|....+...++....+....-.-.|||||.+|+..-.| |.|-+||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3445778887544 444655565 568999988887777654433233345799999999876443 677888876
Q ss_pred CC-CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCc
Q 001310 653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1103)
Q Consensus 653 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 731 (1103)
.+ +.+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred cccccEEEEEEecCCcEEEEeecCceEEEe-ecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310 732 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1103)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 810 (1103)
|.-.-..+.+.+||+.++.+.. -|... +....++..+.. .-.+-+.+..+|..+....++..-+...|..++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 2222234556677776655432 23322 222211111111 1123445656666566666654446778899999
Q ss_pred ecCCCEEEEEc-CC----e-EEEEEcCCceeeEEecC-------CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310 811 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1103)
Q Consensus 811 s~d~~~l~~~~-dg----~-i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1103)
.+||..++.+. .| . --+=-...++.+.-+.. ....|-+++.+.+++-..++.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998887763 11 1 11111123344333332 224678888887455555555566688899999998
Q ss_pred eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1103)
Q Consensus 878 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd 914 (1103)
.+..-.- ..+..++- ...-++..+.+|.+..++
T Consensus 314 vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 7654321 11222332 333456667788887773
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.042 Score=61.85 Aligned_cols=230 Identities=13% Similarity=0.098 Sum_probs=112.0
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc---ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1103)
+.|.++.|+.+.. |++...||.+++||+.+.... .......-....+.+..+..+|- .+++. ++.+.+-+-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7999999998655 445669999999999743200 00000111112233334444453 33333 3444443322
Q ss_pred CCc-eeEEe---ecCCC------ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310 474 TGS-RTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 474 ~~~-~~~~~---~~~~~------~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
... ..+.+ .+... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211 11111 11000 00001 11122333444445555555333222111 112458999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
++.... ++.+.+....-.+....+.... ......+.|..+...++.- ...+.+... .+
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~-----------~~--- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGP-----------DG--- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECC-----------CC---
Confidence 998875 4557777766555555555432 2455566666543222221 223333321 11
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
..+.|.-++..++..-.|| +||......+.++...
T Consensus 289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 2245554555555555566 8888766555555544
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.67 E-value=0.038 Score=63.22 Aligned_cols=250 Identities=13% Similarity=0.112 Sum_probs=127.9
Q ss_pred ccEEEEEECCCCCEEEEE-eCCC----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-C-------
Q 001310 397 VSVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D------- 463 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~-~~d~----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~------- 463 (1103)
..+..+++||||++||.+ +..| ++++.|+.+|+.+.. .+... .-..+.|.+|++. ++++.. .
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999977 3333 599999999864432 11111 1223999999985 333332 2
Q ss_pred --CCceEEEeCCCCcee--EEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCC----CeeEEecCCCcc
Q 001310 464 --DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPGLG 531 (1103)
Q Consensus 464 --d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~~~ 531 (1103)
...|+.|.+.++..- ..+.........+....+.++++++..+.. ..+.+.++... .....+......
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG 278 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence 223788888776543 444444444322333335677776654332 23666777664 122222222223
Q ss_pred EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee---EEEEecccccCCceEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 001310 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIW 605 (1103)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iw 605 (1103)
+....-.. +..++..+..+...+.|...++..... ...+..+. ....+..+.. .+++|+. ...++ .|+++
T Consensus 279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 32222223 444443333444567788888887652 22343333 0123444444 4455555 33443 57889
Q ss_pred ECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCCe
Q 001310 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1103)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~~ 656 (1103)
++..+.....+..... ..|..+...++++.+..... -+++..||+.+++.
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 9984555555554432 22344444455554433222 25677788877754
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.62 E-value=0.003 Score=73.75 Aligned_cols=184 Identities=9% Similarity=0.063 Sum_probs=105.5
Q ss_pred CCeeEEEEecCCCEEEEEc-------CC--eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC--------
Q 001310 803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 865 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 865 (1103)
..+...++||||+.++... +. .+.+++.. +.. +.+.. ....+.-.|+| ||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988764 33 35555542 222 33322 22478899999 77766666422
Q ss_pred ----CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEE---EEcCCCceeeeeeeecCCCcccCCCC
Q 001310 866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 938 (1103)
Q Consensus 866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1103)
+.+.+.++..++... ...+.|..+.|||||+.+|... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2346799999999999998776 477777 444555422211222222111 13
Q ss_pred ceEEEEcCCCCEEEEEeC--CeEEEEECCCceEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCc
Q 001310 939 ETHIQFHKDQTRFLLVHE--THLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGT 1001 (1103)
Q Consensus 939 v~~l~fs~dg~~l~~~~d--~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~ 1001 (1103)
+.++.|.+++.+++...+ ..++..+++ |..... ..+ ...++.+++-+++ .++....++.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 578999999997654433 345555555 322221 222 2566777776653 3444455653
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.17 Score=56.68 Aligned_cols=250 Identities=14% Similarity=0.133 Sum_probs=160.7
Q ss_pred cEEEEEECCCCCEEEEEeCC-CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310 398 SVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1103)
....++..+++..+...... ..+..-+... ..... ....-...-..++.++++.+ ..+....+..|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 55567888888665554322 2344444431 11111 11111133457788888886 45555557899999988888
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEEC---CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
.......-. ....+++.+ ++..+..+.. ++++.+.|-.+............+ ..++++|+|+.++.+. ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 777664333 455666644 5545554443 688888888887777664443334 8899999999888876 23
Q ss_pred ceeEEEEeCCCCeeEEEEec--ccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310 554 ESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1103)
++.|.+.|..+....+ -.. ..........+.+++++++++..... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 6779999977666553 110 01112345678899999977775433 58999999988877662222222 35678
Q ss_pred EEecCCCEEEEEECC-CeEEEEEcCCCCeeEec
Q 001310 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAA 660 (1103)
Q Consensus 629 ~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~ 660 (1103)
.++|+|+.+.+.... +.+.+.|..+.......
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 999999999888554 78888888877655543
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.081 Score=56.59 Aligned_cols=235 Identities=10% Similarity=0.121 Sum_probs=133.2
Q ss_pred cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCC
Q 001310 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 823 (1103)
Q Consensus 744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg 823 (1103)
..++.++.|+.+| +.++++..... . ... .+...|..+...++-+.+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~-~~i------~~~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------P-TRI------LKLSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------c-eeE------eecceEEEEEEecccCEEEEEcCC
Confidence 4567789998888 78877621100 0 011 133459999999999999999999
Q ss_pred eEEEEEcCCceeeEEe--------------cCCCCCeeEEE--EcCCCCCEEEEEeCCCeEEEEEcCCc-----eeEEEe
Q 001310 824 VISLYIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKL 882 (1103)
Q Consensus 824 ~i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l 882 (1103)
.+.++++......... ......+...+ -...+..+|+++. ..+|.+|..... +..+.+
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence 9999998765443311 11223344444 1222445555555 458888877653 344555
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC----CcccCCCCceEEEEcCCCCEEEEEeCCe
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETH 958 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~l~fs~dg~~l~~~~d~~ 958 (1103)
. -.+.+.+++|. ++.++.+..++ ..+.|+.++............ .......++..+.. +++.+|++ .+..
T Consensus 136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~ 209 (275)
T PF00780_consen 136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNI 209 (275)
T ss_pred E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecce
Confidence 4 44778999998 55677776655 889999976643321111111 00000012333333 34555554 3333
Q ss_pred EEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
-...|. .|+..+...-.=.....++++. ..+|++.+. +.|.||++.+++++..+.
T Consensus 210 g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333333 3443321000002345555653 347776654 569999999999988877
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.42 E-value=5.7e-05 Score=82.49 Aligned_cols=205 Identities=12% Similarity=0.155 Sum_probs=127.8
Q ss_pred CcCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEE
Q 001310 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1103)
Q Consensus 334 ~~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 411 (1103)
+..+.|++++-+.+ -++++|..+|.|-+-.+....--. .....+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHHH
Confidence 44778888765443 589999999999998876433210 112556888999999999 77888
Q ss_pred EEEe----CCCeEEEEEecCCCcc-ccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310 412 GVAY----SKHIVQLYAYHGGSDA-RQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1103)
Q Consensus 412 as~~----~d~~i~iwd~~~~~~~-~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1103)
|+|- .|..+.|||+.++-.. +....+.+ -.....+++|..|.+ ++.+|...+.+.++|++.... ......+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~-~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLD-SVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhh-hhhhhhh
Confidence 8873 3567999999886211 11111222 344566889988877 788999999999999763221 1111122
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEE-cCCCCeeEE-ecC----CCccEEEEEEccCCCE-EEEEecCCCCceeEE
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVD-YDA----PGLGCTRMAYSANGRR-LFSCGTSKEGESFLV 558 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~ 558 (1103)
..+..+.+.|- .+.++++-. ||.|.+|| ..+-+.... +.. ....+..++|.|-..- +++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 33444444442 224665554 99999999 333332221 111 1224888999995443 344433 256799
Q ss_pred EEeCC
Q 001310 559 EWNES 563 (1103)
Q Consensus 559 iwd~~ 563 (1103)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.40 E-value=0.15 Score=54.56 Aligned_cols=231 Identities=11% Similarity=0.123 Sum_probs=130.9
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe----
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 481 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 481 (1103)
..++.|+.|..+| +.+++........ .. .+...|..+...++-+ .++.-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~---~i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT---RI-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce---eE-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 9999993322222 11 2333499999999877 444444 599999998754433311
Q ss_pred ----------ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC-----CeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 482 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
......+...+......+...+.......|.+|.+... .....+... ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11223344443112223334444555568888887763 222333333 567788888 566666
Q ss_pred EecCCCCceeEEEEeCCCCeeEEEEecccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--E
Q 001310 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 615 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 615 (1103)
+... ...+.|+.++.....+..... ...++..+.. +++.+|++- +..-.+.|. .|+..+ .
T Consensus 154 ~~~~-----~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSK-----GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCC-----ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 6532 288899987766554432210 0123434444 345555543 222233343 444333 2
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1103)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1103)
+.-. .....+++. ..+++..+. +.|.||++.+++.++.+..
T Consensus 225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 2222 124566664 447776666 5599999999988887764
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.35 E-value=0.074 Score=58.29 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=102.7
Q ss_pred CeEEEEEcCCceeeEEecCCC-CCeeEE---EEcCC---CCCEEEEEeC----------CCeEEEEEcCCc----eeEEE
Q 001310 823 GVISLYIVMTFKTILTIMPPS-PTATSL---AFNPH---DNNVIAIGMD----------DSTILIYNARSS----EVISK 881 (1103)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~-~~i~~l---~~s~~---d~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 881 (1103)
..|++.|..+.+.+.++.-.. ..++++ .+..+ ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888877776654322 344443 34331 1468887753 289999999984 12222
Q ss_pred e--ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc-eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCC
Q 001310 882 L--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 957 (1103)
Q Consensus 882 l--~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~ 957 (1103)
+ ....++|++++-- +++ |+.+. .+.|.+|++...+ ........... .+.++. ..+.++++| ...
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~-------~i~sl~--~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPF-------YITSLS--VFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSS-------SEEEEE--EETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceE-------EEEEEe--ccccEEEEEEccc
Confidence 2 2257889998766 444 44433 4779999999877 44433332221 244444 446688887 345
Q ss_pred eEEEE--ECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 958 HLAIY--EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 958 ~v~iw--d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
.+.++ +....+....-.......++++.|-.|+..++++..+|.+.++...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55555 5533323222122236678999998777789999999999999886
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.1 Score=55.54 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=125.6
Q ss_pred EEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-c
Q 001310 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D 526 (1103)
Q Consensus 448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~ 526 (1103)
.|.++... ++.+--..+.|.-||..+|+.. .+. +.+.+.++... + .+..|+++.. -+.+++.++......+ .
T Consensus 31 ~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-D-AGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-c-CCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 45666664 4455556778888887766432 222 22223333321 2 2234444432 2344555544442221 1
Q ss_pred C----CCccEEEEEEccCCCEEEEEec-----CC--CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310 527 A----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1103)
Q Consensus 527 ~----~~~~i~~~~~s~dg~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1103)
. .....+.....|+|.+.+.... .. ...+.++.+|. .+..++.+..+- ..-+.++|+||++.++.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEEE
Confidence 1 1124567788999988776544 11 22345666665 566666666644 46788999999988877
Q ss_pred EeC-CCcEEEEECCC--Ce---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeEecccccccee
Q 001310 596 AGD-DHVIKIWDMNK--VQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLR 668 (1103)
Q Consensus 596 ~~~-dg~i~iwd~~~--~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~ 668 (1103)
+.. .+.|..|++.. +. ..............-.++...+|.+.+++..+| .|..|+.. ++.+..+..+...++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 654 47788887752 11 111111111123346788888998886555554 89999988 888888888777777
Q ss_pred eeEEe
Q 001310 669 KLSVN 673 (1103)
Q Consensus 669 ~~~~~ 673 (1103)
+++|.
T Consensus 259 ~~~Fg 263 (307)
T COG3386 259 NPAFG 263 (307)
T ss_pred cceEe
Confidence 77776
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.089 Score=55.99 Aligned_cols=224 Identities=15% Similarity=0.096 Sum_probs=134.8
Q ss_pred EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 419 (1103)
-.|.|+...++.+--..+.|.-|+..+|+... +. +.+.+.++..-.++..|+++ ..|
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~-~~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIAC-EHG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEE-ccc-
Confidence 35778887777777778999999998775432 11 23344555555555556555 233
Q ss_pred EEEEEecCCCccccceEec-cc-cccEEEEEEecCCCceEEEEEcC------C---CceEEEeCC-CCceeEEeecCCCc
Q 001310 420 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGD------D---KTIKVWDAV-TGSRTYSFEGHGAP 487 (1103)
Q Consensus 420 i~iwd~~~~~~~~~~~~l~-~h-~~~v~~~~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~~~~~ 487 (1103)
+.+++.+++.......... +. ...-+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6777776655422211111 11 23567888999998 3333222 0 112344444 56666666666666
Q ss_pred eEEEEeeecCCccEEEEE-ECCCeEEEEEcCCC-----C--eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 488 VYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSL-----G--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~-----~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
-+.++|+| |++.++.+ +..+.|..|+++.. . .........+..-.++...+|.+-+++... ...|..
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceEEE
Confidence 78889966 55455554 45588888887631 1 122233334556678888889888644321 235999
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEe
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 597 (1103)
|+.. |+.+..+..+. ..+.+++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 9988 99999988875 566777775 4455555544
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.22 E-value=0.12 Score=56.69 Aligned_cols=217 Identities=13% Similarity=0.060 Sum_probs=119.9
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----CCEEEEEeC---------C-CeEEE
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS---------K-HIVQL 422 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~las~~~---------d-~~i~i 422 (1103)
..|+|.|..+.+.+..+.++ -..+-..+..+.|..+ ..+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 45888998888877765543 1112223344455543 578888753 2 88999
Q ss_pred EEecCC----CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEe-ecCCCceEEEEeeec
Q 001310 423 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSF-EGHGAPVYSLCPHAK 496 (1103)
Q Consensus 423 wd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~~~~ 496 (1103)
+++... ..++.... ....++|.+++-- ++. ++++. .+.|.+|++...+ ....- ......+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 22332222 2456789888866 343 33333 4689999998887 33322 1223355666542
Q ss_pred CCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-------C-
Q 001310 497 ENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------G- 565 (1103)
Q Consensus 497 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-------~- 565 (1103)
+.+++.|+....+.++.++...... ........++++.|-++++.++.+- ..+.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence 3489999998888888666533322 2223355688888887777666553 255576665542 2
Q ss_pred -eeEEEEecccccCCceEEE---EEcC--CC------CEEEEEeCCCcEEE
Q 001310 566 -AIKRTYQGLQLQHNSVSVV---HFDT--AK------DQILAAGDDHVIKI 604 (1103)
Q Consensus 566 -~~~~~~~~~~~~~~~v~~~---~~~~--~~------~~l~~~~~dg~i~i 604 (1103)
+......-|- ...|+++ .+.| .+ ..++.++.+|.|..
T Consensus 213 ~~L~~~~~f~l--g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHL--GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEEC--CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 2222222222 2456665 4344 11 13667777777763
No 377
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.21 E-value=0.00011 Score=80.20 Aligned_cols=203 Identities=12% Similarity=0.096 Sum_probs=129.9
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee--EEecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEEeCC
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
.+.+++.....+...++.|..+|.|.+-.++..... .....+...+++++|++ |.+.||++-.....+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444445567888889999998877654433 34455666889999998 677788776555567779999998
Q ss_pred CC--eeE--EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCCCCceEEEec-CCCEE
Q 001310 564 EG--AIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1103)
Q Consensus 564 ~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~g~~l 637 (1103)
++ .+. ..+.+.. .....+++|-.+.+.+++|.....+.++|++.. .....+. +..+..+..+| .++++
T Consensus 138 s~ltvPke~~~fs~~~--l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSST--LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCcccccccccc--ccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 77 221 2222211 245568888888888999999999999998732 1112221 22366788888 77777
Q ss_pred EEEECCCeEEEEEcCCC--CeeEecccc----ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310 638 AVIANENRIKILETPES--NSVDAAGVL----SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1103)
Q Consensus 638 ~~~~~dg~i~iw~~~~~--~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1103)
++-. ||.|.+||..-. .++..+... ...+..+++.|.. .|...+..-..++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr--------------------tglla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR--------------------TGLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC--------------------cchhhhhccCcceEE
Confidence 7666 899999994321 222222222 2247778888753 233333344456788
Q ss_pred ccccc
Q 001310 712 VEKPL 716 (1103)
Q Consensus 712 ~w~~~ 716 (1103)
++++.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88765
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.17 E-value=0.25 Score=54.54 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=58.9
Q ss_pred ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC-----------------CE
Q 001310 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 592 (1103)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~ 592 (1103)
..+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. +..+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877764 447789999999999999998876 2222222111111 12
Q ss_pred E-EEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 593 l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
| +-+-..|.|.||++..|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 33668899999999999888777643
No 379
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0023 Score=66.89 Aligned_cols=105 Identities=14% Similarity=0.254 Sum_probs=85.7
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccCC-CcCCcccccchhhh
Q 001310 7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 75 (1103)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1103)
.|...|..++...|..+.+..|-+|+|... ++.++-++|.+||-..|++.+.+.. .+.+. ..++-|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~ 195 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence 357889999999999999999999999864 2788899999999999999987642 22322 2237899
Q ss_pred hhhhhhhhhhcCCCHH--HHHHHHHhhccccCCCCHHHHH
Q 001310 76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFK 113 (1103)
Q Consensus 76 ~~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~ 113 (1103)
+..+.|++++..|... +|+...|+.++|+........+
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQ 235 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQ 235 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHH
Confidence 9999999999999888 9999999999999765543333
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.08 E-value=0.1 Score=57.62 Aligned_cols=82 Identities=11% Similarity=0.212 Sum_probs=58.6
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE-EEEccC-----------------C
Q 001310 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG-LVFSDA-----------------L 898 (1103)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d-----------------g 898 (1103)
..+......+.+++.+| ++++.|+.+.-|.|.++|+.++..++.++|-.+.=.. +..... .
T Consensus 301 ~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 301 FGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 34555667789999999 8999999888899999999999988888875542211 111111 1
Q ss_pred CE-EEEEeCCCeEEEEEcCCCc
Q 001310 899 NI-LVSSGGDAQIFVWDVDGWG 919 (1103)
Q Consensus 899 ~~-l~s~s~dg~I~iwd~~~~~ 919 (1103)
.+ ++-+-.-|.|.||.+..|.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCC
Confidence 12 3345678899999998866
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0023 Score=70.52 Aligned_cols=94 Identities=20% Similarity=0.380 Sum_probs=72.6
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE-EEEECCCCCEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV 413 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~spdg~~las 413 (1103)
..|..+.|+|.-. ++|.+..+|.|.+..+. .+++-+ +.-|...++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEEE
Confidence 4788999999988 89999999999999887 444433 333666666 9999999999999
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEec
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~ 451 (1103)
|-.||+|++-|++++..+... +..-...|.++-|++
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998755431 122344566666653
No 382
>PRK10115 protease 2; Provisional
Probab=97.04 E-value=0.85 Score=55.28 Aligned_cols=245 Identities=9% Similarity=0.026 Sum_probs=122.1
Q ss_pred ccEEEEEECCCCCEEEEEeCC-----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----Cc
Q 001310 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~ 466 (1103)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+- -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~---~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNV---EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCc---ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 356678999999999987432 2588999988864321 12221 146999999985 33333222 36
Q ss_pred eEEEeCCCC--ceeEEeecCCCceEEEEeeecCCccEEEEEEC---CCeEEEEEcCC--CCeeEEecCCCccEEEEEEcc
Q 001310 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1103)
Q Consensus 467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 539 (1103)
|+.+++.++ +....+........ +....+.++.+++..+. ++.+.+++.+. ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888888888 33344443333333 32222435555554433 34688888532 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEc
Q 001310 540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 617 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~ 617 (1103)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334456556665 2322 2333331 123677777763 34455566666655554332 22334433
Q ss_pred CCCCCCCCceEEEe--cCCC-EEEEEEC---CCeEEEEEcCCC
Q 001310 618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 654 (1103)
Q Consensus 618 ~~~~~~~v~~v~~s--~~g~-~l~~~~~---dg~i~iw~~~~~ 654 (1103)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222333 3333 3333332 366777777665
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.028 Score=60.97 Aligned_cols=206 Identities=8% Similarity=0.039 Sum_probs=128.5
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCE--E-----EEEeCCCeEEEEEcCCCceeeeeeeecCC
Q 001310 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1103)
+|.++..-..++--|+..|+.+..++-|.+ |.-+.+.|+.+. | +.|=.|..|.-||..-..... +....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence 444555556788899999999999997776 777888887532 2 234467778899887422211 11111
Q ss_pred Ccc-cCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC-
Q 001310 931 GVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS- 1008 (1103)
Q Consensus 931 ~~~-~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~- 1008 (1103)
++. ....-..|.+-..+|..++.+.+|.|++||- .+..-.+.+++-+.+|..|..+.||++++.. .+.++.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~~ 501 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTLI 501 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEec
Confidence 111 1112345666666676666679999999998 6777677788889999999999999998854 47788887764
Q ss_pred -CceeEEeeccccccCCCCCCCceeeEeeccCCceee-----EEEEEC----CCCCcEEEEEecCCcEEEEcc
Q 001310 1009 -NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP-----HAIAAH----PLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1009 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~----p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
.|.-..+.....+...-....+.+-+...|-+.+.. ..++|. .+ .+.+|+ +..-.+..|++
T Consensus 502 kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~~~~~~k~~a~Fs~nTg~g~q-E~tIVt-S~G~f~V~WnL 572 (644)
T KOG2395|consen 502 KDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAGIDNEFKGTAKFSFNTGIGAQ-ERTIVT-STGPFSVSWNL 572 (644)
T ss_pred ccCCccccccccccccccCCCceeeecCHHHhhhhhhhccCceeEEEeccCCcc-eeeEEE-eecceEEEEEh
Confidence 233333333333333333344555555555554321 233332 22 345554 45567888986
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0035 Score=69.21 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcCCCceee
Q 001310 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~ 922 (1103)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|+..+....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4677889999 88899999999999999998 778888887777777 99999999999999999999999999977544
Q ss_pred eeeeecCCCcccCCCCceEEEEc
Q 001310 923 CRSLQTPDGVMTLAPSETHIQFH 945 (1103)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~fs 945 (1103)
....... ..|..+-|+
T Consensus 99 ~~~~s~e-------~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVE-------TDISKGIWD 114 (665)
T ss_pred ccccccc-------cchheeecc
Confidence 3211111 257777776
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.95 E-value=0.46 Score=48.43 Aligned_cols=185 Identities=9% Similarity=0.096 Sum_probs=116.6
Q ss_pred CeeEEEEecCCCEEEEEc-C--CeEEEEEcCCceeeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310 804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1103)
-...+.|..+|.++-+.+ . ..|+.+|+.+++......-... ---.++.. ++++......++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345688888888888776 3 4699999999988766543332 23445554 4567777788999999999999988
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCe
Q 001310 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1103)
Q Consensus 880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~ 958 (1103)
.++.- .+.=..++ .||+.|+.......|..+|..+-+......+....... ..+.-+.+- +|...|=. ....
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence 88863 35556677 46777777777778999998886654433333221111 245556665 56555544 6778
Q ss_pred EEEEECCCceEEEEeeC-----------CC---CcCeEEEEEccCCCEEEEEe
Q 001310 959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~~ 997 (1103)
|...|..+|+....+-. .+ ..-...+++.|....|.+.+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88899999998775311 01 34578899988765544433
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0027 Score=43.30 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.6
Q ss_pred ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1103)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd 914 (1103)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.84 E-value=0.18 Score=52.57 Aligned_cols=147 Identities=17% Similarity=0.150 Sum_probs=92.3
Q ss_pred CCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE-cCCceeE
Q 001310 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 879 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 879 (1103)
..+.+.++++|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888776 5554444444444333332 334788889999 677777777777777774 3333322
Q ss_pred -EEecc--CCCCEEEEEEccCCCEEEEEe---CCCeEEEEEcCCCcee----eeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 880 -SKLEG--HSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 880 -~~l~~--h~~~V~~l~~s~dg~~l~s~s---~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
..+.. -.+.|.++.+||||..+|... .++.|.+=-+...... ....+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 12221 122899999999999988766 3567777655432211 11112222111 13689999999999
Q ss_pred EEEEE
Q 001310 950 RFLLV 954 (1103)
Q Consensus 950 ~l~~~ 954 (1103)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88875
No 388
>PRK10115 protease 2; Provisional
Probab=96.77 E-value=2.2 Score=51.83 Aligned_cols=244 Identities=10% Similarity=0.014 Sum_probs=121.3
Q ss_pred CceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.+..+.+||||++++.+.+.+| .+++-|+.+|+.+.. . +. ..-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~---~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LD---NVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------cc---CcceEEEEeeCCCEE
Confidence 5777899999996555544444 588999988864422 0 11 111459999999987
Q ss_pred EEEeCC------CeEEEEEecCCCccccceEeccccccEE-EEEEecCCCceEEEEEc-CCCceEEEeCC--CCceeEEe
Q 001310 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1103)
Q Consensus 412 as~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~-~~~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~ 481 (1103)
+....+ ..|..+++.++..-.. ..+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 3577888887721111 12222222233 33344478753332222 33578888843 34422222
Q ss_pred ecCCCceEEEEeeecCCccEEEEEECC-C--eEEEEEcCC-CCeeEEecC-CCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310 482 EGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1103)
....+....+. +. ++.+++....+ . .|...++.. .+....+.. ....+..+.+. +++|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 22222222222 21 22233332221 2 343344442 222222333 23367777776 4455544432 34566
Q ss_pred EEEEeCCCCeeEEEEe-cccccCCceEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCe
Q 001310 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1103)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 611 (1103)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33333 111 223333344 3334 333332 45778888888764
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.76 E-value=0.45 Score=49.68 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=88.9
Q ss_pred CeeEEEEcCCCCCEEEEEe---CCCeEEEEEcCCceeEEE-eccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE-cCCCc
Q 001310 845 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 919 (1103)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd-~~~~~ 919 (1103)
.+.+.++++ +++.+|... ....++++.. +..... +.+. .+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 676666544 3335555543 333333 2333 678889999988777777677677774 33333
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe----CCeEEEEECC---Cc--eEE---EEeeCCCCcCeEEEEEc
Q 001310 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 987 (1103)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~v~iwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 987 (1103)
... ..+...... ..|..+.+||||..+|... ++.|++--+. .+ ..+ ..+.......++.+.|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 221 112222110 1599999999999999842 6777776543 33 111 11122235688999999
Q ss_pred cCCCEEEEEecCC
Q 001310 988 CDCRMVFTSFVDG 1000 (1103)
Q Consensus 988 ~dg~~l~t~~~dg 1000 (1103)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9998877665433
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.72 E-value=0.0031 Score=43.03 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=33.0
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd 363 (1103)
.....+..|...|.++.|+|++. ++++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34566778999999999999997 789999999999996
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.70 E-value=2.4 Score=51.46 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=119.8
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCc--------eEEEEeee--------------cCCccEEEEEECCCeEEEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW 514 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~iw 514 (1103)
.++.++.++.|.-.|..+|+.+.++...... .+.+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777888888888888888766432211 11222221 1233478888899999999
Q ss_pred EcCCCCeeEEecCCCc------------cEEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeeEEEEecc
Q 001310 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1103)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1103)
|.++++....+..... ....+.-+| .+..+++++...+ ..+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9999888765532111 000111122 1334555543222 2678999999999988776531
Q ss_pred ccc--------------CCce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEEEcCCCC
Q 001310 575 QLQ--------------HNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 575 ~~~--------------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1103)
... ...+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 100 0011 2345555555554422 224566678888888876654211
Q ss_pred C-------CCCceEEEec-CCC---EEEEEECCCeEEEEEcCCCCeeEecc
Q 001310 622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 622 ~-------~~v~~v~~s~-~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 0 0111122333 563 78999999999999999998876554
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.69 E-value=1.1 Score=47.46 Aligned_cols=157 Identities=10% Similarity=0.017 Sum_probs=82.7
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC-Cc
Q 001310 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WG 919 (1103)
Q Consensus 841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~-~~ 919 (1103)
...+.+..+..++ |+++++++.......-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+... .+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3456788888898 89999888765555677644322122222246789999999998776644 888888877222 11
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeC--CCCcCeEEEEEccCCCEEEEEe
Q 001310 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
.-........... -.+..++|.+++...|++..|.+. ...+.|+.=..-.. .-......+.|..+.+-++. +
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-G 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-C
Confidence 1111011111111 147899999999999998888554 34454543322121 22556888999877666665 5
Q ss_pred cCCcEEEE
Q 001310 998 VDGTLSIH 1005 (1103)
Q Consensus 998 ~dg~v~vW 1005 (1103)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78887655
No 393
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.57 E-value=0.061 Score=63.88 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc-eEEEEeeec---CCccEEEEEECCCeEEEEEcCCCCee-EEec-
Q 001310 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGAR-VDYD- 526 (1103)
Q Consensus 453 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~- 526 (1103)
.+.++|........|+-.|+++|+.+..+..|... |..++.... -...-.+.|-.++.+..||.+-.... ....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33435555566788999999999999999888755 777654211 01234667778888999998865422 2111
Q ss_pred ---CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310 527 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1103)
Q Consensus 527 ---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 603 (1103)
.......|++-+.+| ++|+|+. +|-|++||--..+....+.+.. .+|..+..+.||+++++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 233467888888777 4556655 4459999954333334445544 89999999999999988774 4555
Q ss_pred EEEC
Q 001310 604 IWDM 607 (1103)
Q Consensus 604 iwd~ 607 (1103)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6654
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.51 E-value=1.7 Score=47.57 Aligned_cols=113 Identities=23% Similarity=0.276 Sum_probs=59.1
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----CCEE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLL 411 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~l 411 (1103)
..+.|+|.|||+ ++++ ...|.|.+++ ..+..... + -++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~--v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP--V--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE--E--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce--e--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 5555 5589999999 55543110 0 000 0123445678899999994 4433
Q ss_pred EEEeCC--------CeEEEEEecCCC-ccc---cc-eEecc---ccccEEEEEEecCCCceEEEEEcCCC
Q 001310 412 GVAYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 412 as~~~d--------~~i~iwd~~~~~-~~~---~~-~~l~~---h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
++.+.. ..|.-|....+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 443321 245556555441 111 00 01111 222456799999995 455555443
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.44 E-value=0.27 Score=58.02 Aligned_cols=195 Identities=9% Similarity=-0.010 Sum_probs=103.5
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCcee
Q 001310 855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 921 (1103)
Q Consensus 855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~ 921 (1103)
++.+.++|+.+ ..+..||..+.+- +..+........ +..-+|++.+.||.++ .+..||..+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66788888754 3578888877642 222221111111 2233688888888764 4788998876543
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eC-----------------------CeEEEEECCCceEEEEeeCCC
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS 977 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d-----------------------~~v~iwd~~~~~~~~~~~~~h 977 (1103)
....+...... ...+ .-+|++.++| .+ ..+..||..+.+-... ..-.
T Consensus 381 ~~~~mp~~r~~------~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~ 451 (557)
T PHA02713 381 MLPDMPIALSS------YGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW 451 (557)
T ss_pred ECCCCCccccc------ccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence 32222222211 1122 2367766665 22 2477888877654322 1111
Q ss_pred CcCeEEEEEccCCCEEEEEecC------CcEEEEeCCC-ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEEC
Q 001310 978 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAH 1050 (1103)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~d------g~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1050 (1103)
......-+..-+|+..+.||.+ ..+..||..+ .+....- .++... .+++. +..
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~----~m~~~r---------~~~~~------~~~- 511 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT----TTESRL---------SALHT------ILH- 511 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc----ccCccc---------cccee------EEE-
Confidence 1122222234567777777754 2467788887 4443111 111111 01111 122
Q ss_pred CCCCcEEEEEecCC--cEEEEccCCCCCCCccCCcc
Q 001310 1051 PLKPTQFAVGLTNG--EVYVIEPNEPGDTWAVLPPD 1084 (1103)
Q Consensus 1051 p~~~~~l~~~~~dg--~v~vw~~~~~~~~w~~~~~~ 1084 (1103)
++.+.++||.|| ++-.||+ ...+|....|-
T Consensus 512 --~~~iyv~Gg~~~~~~~e~yd~--~~~~W~~~~~~ 543 (557)
T PHA02713 512 --DNTIMMLHCYESYMLQDTFNV--YTYEWNHICHQ 543 (557)
T ss_pred --CCEEEEEeeecceeehhhcCc--ccccccchhhh
Confidence 278888999898 6777777 55678766554
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.43 E-value=2.1 Score=47.59 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=151.3
Q ss_pred CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001310 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 819 (1103)
Q Consensus 745 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----d~~~l~~ 819 (1103)
+...+++|+..|.++||+-......+. ..+... .-..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~-----~l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLET-----QLKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEE-----ecCCcEEEEEeccccCCCCcceEEE
Confidence 345789999999999998533221111 001111 1345666655432 3457777
Q ss_pred EcCCeEEEEEcCC--ce-------eeEEecCCC--CCeeEEEEcCC----CCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310 820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1103)
Q Consensus 820 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1103)
-.-.++.+|.+.. |. .+..+..|. .....+++-|- +..++++-+.||++.+|+-+.......+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 7778888888731 11 112222222 22233333321 246899999999999999776554444544
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc---------------------eeeeeeeecCCCcccCCCCceEEE
Q 001310 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG---------------------IQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
.--...+++.+.-..+++++.+..+.-|....-. ......+..-+.. -.+..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEE
Confidence 2223447788888889999999888888753200 0000001111100 1233444
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEc----cCCC---EEEEEecCCcEEEEeCCCceeEEee
Q 001310 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS----CDCR---MVFTSFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus 944 fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs----~dg~---~l~t~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
++.....+++-.+.++...+.. |.......- .-.+.....|. .++. .+++++.++++.||.=.+..+.+..
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l 326 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL 326 (418)
T ss_pred cCCCCceEEEEecceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC
Confidence 5555555666566777777764 554433221 11111111222 1222 4788889999999986655555444
Q ss_pred ccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
. + .+| ++.++.-++-...|++-+.+|.+.+-=+
T Consensus 327 ~------~---------------~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 327 P------H---------------VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred C------C---------------CCE-EEEecccCCCCceEEEEcCCCcEEEEEe
Confidence 3 1 113 2344433333678999999999887655
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.95 Score=46.21 Aligned_cols=205 Identities=16% Similarity=0.238 Sum_probs=124.1
Q ss_pred cccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1103)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 811 (1103)
+-...+.++.|+|+.+.|++......-.|+= ...|..+.+..+.+ -.....+++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999888775554432 33444455555543 3445567888
Q ss_pred cCCCEEEEEc-CCeEEEEEcCCceeeEE-------ec--CC-CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---
Q 001310 812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 877 (1103)
Q Consensus 812 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--- 877 (1103)
.+|+++++-. ++.+.++.+........ +. .+ +...-.+||+| .++.|..+-+-.-+.||.+..+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888887765 67787777664422211 11 12 45678899999 66677777777777777665332
Q ss_pred eEEEeccCC-------CCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 878 VISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 878 ~~~~l~~h~-------~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
.+.....++ ..|.++.|.+ .+.+|+-+.+++.+...|....-........-..|-...-.....++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 111111122 3467788875 45667777778888888877643222112222222221112456788888888
Q ss_pred EEEEEeCCeEEEE
Q 001310 950 RFLLVHETHLAIY 962 (1103)
Q Consensus 950 ~l~~~~d~~v~iw 962 (1103)
+-+++..+-.+.+
T Consensus 297 lYIvSEPnlfy~F 309 (316)
T COG3204 297 LYIVSEPNLFYRF 309 (316)
T ss_pred EEEEecCCcceec
Confidence 8777765544443
No 398
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.39 E-value=0.1 Score=44.91 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=64.8
Q ss_pred ceEEEe---cCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 337 V~~v~~---spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
|+++++ ..||+.-|++||.|..|+||+=+ +.+.. + .-.+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i------------------~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I------------------TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E------------------ecccceEEEEEcCC-CEEEE
Confidence 455555 45666679999999999999943 33322 1 14567888877766 66889
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEe---cCCCceEEEEEcCCCceE
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK 468 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s---~d~~~~~l~s~~~d~~i~ 468 (1103)
+..+|+|-+|+-... ....+... .+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-----lWRiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-----LWRIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-----eeeeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976431 11222222 25555443 34443 578887787664
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.37 E-value=0.67 Score=50.37 Aligned_cols=237 Identities=12% Similarity=0.110 Sum_probs=111.9
Q ss_pred CCcEEEEee-cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--
Q 001310 745 GGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-- 821 (1103)
Q Consensus 745 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-- 821 (1103)
+.++|++.+ .++.|.|.|+...... +++..+...+.+... ..-.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~----------P~l~KvIe~~ev~~k-----~g~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRK----------PRLHKVIEPEEVFEK-----TGLSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-----------EEEEEE-HHHHHHH-----H-EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCC----------CceEeeeCHHHHHhh-----cCCCCCceeeecCCccEEEEeccC
Confidence 456677766 5688999998754321 222211111000000 0011122344457898888762
Q ss_pred -C----CeEEEEEcCCceeeEEecCCC---CCeeEEEEcCCCCCEEEEEe--------------------CCCeEEEEEc
Q 001310 822 -G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------------DDSTILIYNA 873 (1103)
Q Consensus 822 -d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~--------------------~dg~v~iwd~ 873 (1103)
+ |.+.+.|-++.+......... ..-..+-+.| ..+.+++.. ...++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 1 458899998888877765422 2335567778 667777743 2358999999
Q ss_pred CCceeEEEeccCC--CCEEEEEEccC--CCE-EEEEeCCCeEEEE-EcCCCceeeeeeeecCCCcc-------------c
Q 001310 874 RSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVM-------------T 934 (1103)
Q Consensus 874 ~~~~~~~~l~~h~--~~V~~l~~s~d--g~~-l~s~s~dg~I~iw-d~~~~~~~~~~~~~~~~~~~-------------~ 934 (1103)
.+.+.++++.--. .....+.|..+ ..+ ++.+.-..+|..| ..+.++-...+++..+.... .
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999998887422 23556777644 433 3333334445444 33556655555555543211 0
Q ss_pred CCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCc---eEEEEeeCCC---------------CcCeEEEEEccCCCEEE
Q 001310 935 LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEEL---TCLKQWFPIS---------------SVPISQATFSCDCRMVF 994 (1103)
Q Consensus 935 ~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~---~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~ 994 (1103)
...-|+.+..|.|.++|.++ ..|.|+.||+.+. +++.++..+- .+...-+..|-||+.|.
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 02357999999999999996 7899999999764 3443333221 22346688999999887
Q ss_pred EEe
Q 001310 995 TSF 997 (1103)
Q Consensus 995 t~~ 997 (1103)
+.+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 654
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.36 E-value=0.23 Score=58.55 Aligned_cols=201 Identities=8% Similarity=-0.032 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCC------CceEEEeCCCCcee--EEeecCCCceEEEEeeecCCccEEEEEECCC-----eEEEEEcCC
Q 001310 452 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1103)
Q Consensus 452 d~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 518 (1103)
++. +.+.||.+ ..+..||+.++.-. ..+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 555 56666643 34778887766422 111111111112222 556777777654 377888776
Q ss_pred CCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC-------------------ceeEEEEeCCCCeeEEEEecccccCC
Q 001310 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 579 (1103)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1103)
.+-...-..........+..-+|+..+.|+.++.. ...+..||..+.+-...-.-.. ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 54322111111111111223367777776643210 2458889988776533222111 011
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--eEEEEE
Q 001310 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1103)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg--~i~iw~ 650 (1103)
....++ -++...+.||.+ ..+..||..+ .+-...-...........++ -+|+..++|+.++ .+..||
T Consensus 456 ~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 111222 245555566643 2467899887 44433222222211222222 2688889998888 677788
Q ss_pred cCCCCeeEecccc
Q 001310 651 TPESNSVDAAGVL 663 (1103)
Q Consensus 651 ~~~~~~~~~~~~~ 663 (1103)
..+.+.......|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 8777555443333
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.099 Score=56.93 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=96.0
Q ss_pred CCCEEE-EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceE-----EEEEcCCCceEEEeCCC-Cc-ee
Q 001310 407 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS-----VITCGDDKTIKVWDAVT-GS-RT 478 (1103)
Q Consensus 407 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~-----l~s~~~d~~i~iwd~~~-~~-~~ 478 (1103)
+..+|+ ++.....++--|++.|+.+. ++.-|.. |+-+.+.|+.+.-. -+.|-.|..|.-||.+- +. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 445544 34445568888999998766 4555555 88888888764211 13355678899999763 22 23
Q ss_pred EEeecCC----CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310 479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 479 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
..-++|. ....|.+- ..+ .+|+.||.+|.||+||--......-+++-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 3333332 23344443 334 4899999999999999744445556788888999999999999998765 4
Q ss_pred eeEEEEeC
Q 001310 555 SFLVEWNE 562 (1103)
Q Consensus 555 ~~i~iwd~ 562 (1103)
.++.+.++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666654
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.32 E-value=0.21 Score=55.60 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=91.3
Q ss_pred CCeeEEEEcCCCCCEEEEEe--CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCC----CEEEEEeCCCeEEEEEcCC
Q 001310 844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg----~~l~s~s~dg~I~iwd~~~ 917 (1103)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+.+|+ .|..+.|+|-+ ..|...-.-+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788899984 444444332 334433322 23444444 48899999853 3455566778899999874
Q ss_pred CceeeeeeeecCCCcc--cCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310 918 WGIQTCRSLQTPDGVM--TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1103)
Q Consensus 918 ~~~~~~~~~~~~~~~~--~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1103)
......+.+....... +.+.-...+.|+|....|++ .....=.++++.........-..-.+.|-+.+|..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 3222222222211111 11123467899999999998 44443344555432222211223478899999999999887
Q ss_pred EEec-CCcEEEEeCCCc
Q 001310 995 TSFV-DGTLSIHEASNL 1010 (1103)
Q Consensus 995 t~~~-dg~v~vWd~~~~ 1010 (1103)
++-. .=.-++||-...
T Consensus 172 VAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEeCCeEEEEEecCchh
Confidence 7642 234678886543
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.31 E-value=1.8 Score=48.14 Aligned_cols=285 Identities=11% Similarity=0.093 Sum_probs=147.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-----eEEEEcCCCCCCCCceEEEe---c--CCCEEEEEECCCeEEEEEcCCC--C--
Q 001310 590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 655 (1103)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~g~~l~~~~~dg~i~iw~~~~~--~-- 655 (1103)
...|++||..|.++||+...+. .+-..+.. .+|..+..- + +...||+ -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4689999999999999986533 22222222 345555433 2 2334554 44467888876311 1
Q ss_pred -----eeEeccccc--cceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310 656 -----SVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1103)
Q Consensus 656 -----~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1103)
.+.....|. .....+.+.|.+. ...-..+..-+.||.+.+++-+... ....+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l 171 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL 171 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence 111111111 1112222222221 1224567778899999999865321 12222
Q ss_pred cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccc----------ccccCCeeecCCCCCceeeccCCC
Q 001310 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD 798 (1103)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1103)
+..-.. ..+.+.+....+++++.+..+.-|+...-........ ....-..-|...-|+...
T Consensus 172 p~~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------ 242 (418)
T PF14727_consen 172 PDFLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------ 242 (418)
T ss_pred CCCCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence 221122 2467888888899999998888888654322111110 111122334444444222
Q ss_pred CCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEE------cCCCCCEEEEEeCCCeEEEEE
Q 001310 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF------NPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 799 ~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~------s~~d~~~lasg~~dg~v~iwd 872 (1103)
.+..+.++.....+++-+..++.+.+-. |......+-.-.+.....| .+..+..+++++.++++.||.
T Consensus 243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 2333344444555666666677666653 4433332211111111111 221123588899999999996
Q ss_pred cCCceeEEEeccCCCCEEEEEE---ccCCCEEEEEeCCCeEEEEEcCC
Q 001310 873 ARSSEVISKLEGHSKRVTGLVF---SDALNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~---s~dg~~l~s~s~dg~I~iwd~~~ 917 (1103)
= .+++....-...+| ++.. ..-...+++-+.+|.+.+-=+.+
T Consensus 317 d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 317 D--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred C--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 3 34444443322333 3333 22346888889999988876665
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.25 E-value=0.38 Score=56.61 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=122.7
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC------CceEEEeCCC
Q 001310 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1103)
Q Consensus 407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~ 474 (1103)
.+..+++|+.+ ..+..||..+++-. ....+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666655 35888888876321 111222 222234445443 44 77888888 3577888877
Q ss_pred CceeE--EeecCCCceEEEEeeecCCccEEEEEECCCe-----EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
++-.. .+...........+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 65322 22111111111111 6678888988875 6667766544332222222112222233467777777
Q ss_pred ecCCCCc--eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEcCCC
Q 001310 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 620 (1103)
+.++..+ ..+..||..+++....-.-.. .+.... ++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 6555432 568899998876544332222 012222 222 2455666677665 37788888776554432221
Q ss_pred CCCCCceEEEecCCCEEEEEECCC-----eEEEEEcCCCC
Q 001310 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1103)
Q Consensus 621 ~~~~v~~v~~s~~g~~l~~~~~dg-----~i~iw~~~~~~ 655 (1103)
....+..+ .-++...++|+.|| +|..||..+.+
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 11111112 22467778887765 45666665553
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.21 E-value=1.7 Score=47.44 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=112.0
Q ss_pred CccEEEEEE-CCCeEEEEEcCCCC----eeEEecC---CC----ccEEEEEEccCCCEEEEEecC--CCCceeEEEEeCC
Q 001310 498 NIHFIFSIS-VDGKIKAWLYDSLG----ARVDYDA---PG----LGCTRMAYSANGRRLFSCGTS--KEGESFLVEWNES 563 (1103)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~---~~----~~i~~~~~s~dg~~l~~~~~~--~~~~~~i~iwd~~ 563 (1103)
+.++|+..+ ..++|.|.|..+.. ....+.. .. .....+..-|+|+.++++-.+ +++.+-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666655 67889999987432 1222221 00 123345556899998876553 4455678899988
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
+.+.............--..+.+.|..+.+++.. .-.++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777765442223456677888888888754 23579999999999999998764322
Q ss_pred CCceEEEec--CCCEEEEEE-CCCeEEEEEc-CCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310 624 ENPRICFNK--NGTLLAVIA-NENRIKILET-PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1103)
Q Consensus 624 ~v~~v~~s~--~g~~l~~~~-~dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1103)
....+.|.. +..+=++++ -..+|..|-- ..++... .+ |. .+.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a-~k-----Vi--~ip-------------------------- 291 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA-EK-----VI--DIP-------------------------- 291 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE-EE-----EE--EE---------------------------
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee-eE-----EE--ECC--------------------------
Confidence 344566654 444433332 3344444433 3332110 00 00 000
Q ss_pred cceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec-CceEEEeecCCCcc-ccccccccc
Q 001310 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDL-TLSTEATTK 777 (1103)
Q Consensus 700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~-~~~~~~~~~ 777 (1103)
...+.-|.+.. +..+...-..-|+.+.+|.|.++|..... .|.++.||+..... ...++....
T Consensus 292 -------~~~v~~~~lp~--------ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG 356 (461)
T PF05694_consen 292 -------AKKVEGWILPE--------MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG 356 (461)
T ss_dssp --------EE--SS---G--------GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred -------CcccCcccccc--------cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC
Confidence 01111121110 00000112345788999999999987776 69999999987543 111111100
Q ss_pred cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE
Q 001310 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 820 (1103)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~ 820 (1103)
..+.- + ......+..-.+....+.+|.||++|...
T Consensus 357 G~~~~-----~---~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 357 GSIRK-----G---DHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TTTT------B-----TTS------S----EEE-TTSSEEEEE
T ss_pred cEecc-----C---CCccccccccCCCCCeEEEccCCeEEEEE
Confidence 00000 0 00001111234456788999999988765
No 406
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.11 E-value=0.29 Score=42.23 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=64.1
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001310 889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1103)
Q Consensus 889 V~~l~~s~---dg-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~ 964 (1103)
|++|++.. || +.|+.|+.|..|++|+=+. .+....-. ..|++++-...+++...-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 66777664 32 6799999999999998765 11111111 2578888888877666668999999975
Q ss_pred CCceEEEEeeCCCCcCeEEEEEcc---CC-CEEEEEecCCcEE
Q 001310 965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLS 1003 (1103)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~dg~v~ 1003 (1103)
. +.+.. ......++++++.. || .-|++|-.+|.|-
T Consensus 71 ~--~RlWR--iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 S--QRLWR--IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--ceeee--eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3 22222 22233466665443 33 2588888888764
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.00 E-value=1.6 Score=47.70 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=59.4
Q ss_pred CeeEEEEecCCCEEEEEcCCeEEEEEcCCcee---eEEe----cCCCCCeeEEEEcCC---CCCEEEEEeCC--------
Q 001310 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 865 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d-------- 865 (1103)
....|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999999987789999999 44443 2222 123457799999992 24333333321
Q ss_pred CeEEEEEcCCc-------e-eEEEecc---CCCCEEEEEEccCCCEEEEEeCCC
Q 001310 866 STILIYNARSS-------E-VISKLEG---HSKRVTGLVFSDALNILVSSGGDA 908 (1103)
Q Consensus 866 g~v~iwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~dg 908 (1103)
..|.-|....+ + .+..+.. .......|+|.|||.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24444544433 1 1122222 222346699999998888776544
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.86 E-value=2.6 Score=51.15 Aligned_cols=204 Identities=12% Similarity=0.097 Sum_probs=120.6
Q ss_pred CCCEEEEEcCCeEEEEEcCCceeeEEecCCCCC--------eeEEEEcC---------------CCCCEEEEEeCCCeEE
Q 001310 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 869 (1103)
Q Consensus 813 d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~v~ 869 (1103)
++...++..++.|.-.|..+|+.+.++...... .+.+++-. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 454555445788888899999888876532211 12233321 0234788899999999
Q ss_pred EEEcCCceeEEEeccCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEEcCCCceeeee
Q 001310 870 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 924 (1103)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~l~s~s~----------dg~I~iwd~~~~~~~~~~ 924 (1103)
-.|..+|+.+..+.. .+.|. .+.-+| .+..+++++. +|.|+-+|+.+|+..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 22221 011111 1335555542 688999999999876533
Q ss_pred eeecCCCccc---------CCCCc-eEEEEcCCCCEEEEE-------------------eCCeEEEEECCCceEEEEeeC
Q 001310 925 SLQTPDGVMT---------LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 975 (1103)
Q Consensus 925 ~~~~~~~~~~---------~~~~v-~~l~fs~dg~~l~~~-------------------~d~~v~iwd~~~~~~~~~~~~ 975 (1103)
....+..... ....+ ..+++.++..++... ..+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 2211110000 00011 344566655555441 124577789999998877554
Q ss_pred CCC--------cCeEEEEEcc-CCC---EEEEEecCCcEEEEeCCCceeEEeec
Q 001310 976 ISS--------VPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 976 ~h~--------~~v~~l~fs~-dg~---~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
-|. ....-+.+.. ||+ .++.++.+|.+.+.|-++|+.+..+.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 331 1111223333 664 78889999999999999999887654
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.75 E-value=2.2 Score=41.79 Aligned_cols=208 Identities=12% Similarity=0.082 Sum_probs=113.7
Q ss_pred EEEEcCCCceEEEeCCCCceeE-EeecCCCceEEEEeeecCCc--cEEEEEECCCeEEEEEcCCCCeeE--Ee---c--C
Q 001310 458 VITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARV--DY---D--A 527 (1103)
Q Consensus 458 l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~---~--~ 527 (1103)
+..-=..+.|.-||+.+.+..+ ++.+. ++.++.+ |..++ .+.+.++..-.|.-||........ ++ . .
T Consensus 30 l~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 30 LYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEeccCceehhhhhhhheEEEEEecC--cceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 3333345567778887765433 23322 2333332 22222 233333333334557643322222 11 0 1
Q ss_pred CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc-----cCCceEEEEEcCCCCEEEE-EeCCCc
Q 001310 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAKDQILA-AGDDHV 601 (1103)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~-~~~dg~ 601 (1103)
...+.+.-..+|+|++.+ +.....++ .+....+.+..-+.+|+. .-.--+.++|+.+.+.++. -+.+-+
T Consensus 107 kknR~NDgkvdP~Gryy~-GtMad~~~----~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYG-GTMADFGD----DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred HhcccccCccCCCCceee-eeeccccc----cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 122455567889999943 33322111 111222332222333320 0133466788877766655 556777
Q ss_pred EEEEE--CCCCeeE-----EEEcC--CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEE
Q 001310 602 IKIWD--MNKVQLL-----TTIDA--GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1103)
Q Consensus 602 i~iwd--~~~~~~~-----~~~~~--~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~ 672 (1103)
|.-|| ..+|... ..+.. .......-.++...+|++.++.-..++|...|..+++.+..+..+...+++++|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 87777 5565432 22211 011122346777888999999999999999999999999999999999999999
Q ss_pred e
Q 001310 673 N 673 (1103)
Q Consensus 673 ~ 673 (1103)
.
T Consensus 262 g 262 (310)
T KOG4499|consen 262 G 262 (310)
T ss_pred c
Confidence 7
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.028 Score=66.27 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
.+..++.|+..|.+-..|+.+. +.+...-..-.++|++++|+.||+ .++.|-.+|.|.+||..+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667889998999988888764 222112223456899999999999 789999999999999999999999998988
Q ss_pred ceEEEEeee-cCCccEEEEEECCCeEEEEEc
Q 001310 487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 516 (1103)
Q Consensus 487 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 516 (1103)
+..++-++. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775442 333446777777665 4544
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.73 E-value=0.01 Score=68.16 Aligned_cols=195 Identities=13% Similarity=0.089 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCce-eEEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCC--CceeeeeeeecCCCcccCCCCce
Q 001310 865 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET 940 (1103)
Q Consensus 865 dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~ 940 (1103)
.+.+++-+..+.- ....+++..+.|..++|-.. ...++ -.-|.+.||+++- |++.....+......-.....|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4556666655432 12345667788888888431 11222 3346788998873 55444333333322221112344
Q ss_pred EEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEE-----------EccCCCEEEEEecCCcEEEEeCC
Q 001310 941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 941 ~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
.+-|-+...++..+ .++.+++...++... .++.+|+..++.++ .||||+.+|+++.||.++.|.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 45555667777776 556666655543322 34556877776654 48999999999999999999874
Q ss_pred -CceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-cEEEEcc
Q 001310 1009 -NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEP 1071 (1103)
Q Consensus 1009 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~vw~~ 1071 (1103)
+|+..-+.. ..+-+|. ..+..|+. .|...+..+++.++ .+++++.+-| .+++|.-
T Consensus 266 i~g~~~~rcl-hewkphd--~~p~vC~l-c~~~~~~~v~i~~w----~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 266 ITGKIVHRCL-HEWKPHD--KHPRVCWL-CHKQEILVVSIGKW----VLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eeccccHhhh-hccCCCC--CCCceeee-eccccccCCcccee----EEEEecccCCcceeEeec
Confidence 444332222 2233332 34567766 67777776777765 5666666655 5888875
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.65 E-value=0.029 Score=40.08 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.9
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCe
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~ 369 (1103)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 34799999999998 8999999999999998 5554
No 413
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.58 E-value=3.2 Score=42.46 Aligned_cols=192 Identities=11% Similarity=0.062 Sum_probs=114.6
Q ss_pred ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
.-...+.|..+|..+-+++.-|.-. ++.+++.+|+......++ ...--..+++..|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLP---PRYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-T---TT--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECC---ccccceeEEEECCE
Confidence 3456788888888777777766433 234455666555555543 22333455565555
Q ss_pred CEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC--C---CCE
Q 001310 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH--S---KRV 889 (1103)
Q Consensus 815 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h--~---~~V 889 (1103)
-+..+--++...+||..+.+.+.++.- .+.=..++. |++.|+..+....++++|..+.+....+.-. . ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 555555689999999999999998864 356667773 5667777777789999998887766555432 1 235
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC-------CcccCCCCceEEEEcCCCCEEEEE
Q 001310 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV 954 (1103)
Q Consensus 890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~fs~dg~~l~~~ 954 (1103)
+-|.+. +|...|-.=....|..-|..+|++....-+..+. .......-...+|+.|.+..+.+.
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 556665 6777776656667888888888866543222111 111112346889998887766664
No 414
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.58 E-value=7.8 Score=46.80 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=66.1
Q ss_pred EEEecCCCEEEEEcCCeEEEEEcCCceeeEEec--CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEecc
Q 001310 808 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 884 (1103)
Q Consensus 808 l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 884 (1103)
.|+.|-..++.+|-...+++||+...+.++... .....|+.+.+. +..+++|+.--.|..+..+. +..+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 456677778888888999999998777766543 235677888874 45778787666565544433 333444433
Q ss_pred --CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310 885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1103)
Q Consensus 885 --h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~ 916 (1103)
-...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22346666654 44566666666666555443
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.46 E-value=4.3 Score=43.11 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=82.0
Q ss_pred CCCCeeEEEEecCCCEEEEEcCCeE-EEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Ccee
Q 001310 801 SQEAVPCFALSKNDAYLFSASGGVI-SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEV 878 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~dg~i-~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~ 878 (1103)
....+..+..++||++++++..|.+ .-||--...-...-......|.++.|+| ++.+.+. ...|.|+.=+.. ..+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCccc
Confidence 4467888889999999999987664 5676542111122223467999999999 6666554 488888887722 2222
Q ss_pred EEE----eccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310 879 ISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1103)
Q Consensus 879 ~~~----l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 954 (1103)
-.. ...-.-.+..++|.+++...|+|+ .|. .+...+.|+.=. ..+... ..+.-...+.|.++.+-++.|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~--~~~~~~---~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQ--KDRVGE---NVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-E--E-GGGT---TSSS---EEEEEETTEEEEE-
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccce--ECcccc---CCCCceEEEEEcCCCceEEEC
Confidence 111 111223478999999988777655 443 345566655211 111111 111247889999888999999
Q ss_pred eCCeEEEE
Q 001310 955 HETHLAIY 962 (1103)
Q Consensus 955 ~d~~v~iw 962 (1103)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 99987665
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=95.39 E-value=4.7 Score=44.14 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=90.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1103)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~ 921 (1103)
...+..+.+.| ++.+++++. .|.+..-.-..++.-... ..-...++++++.++++.++. +..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence 45788999999 776666554 565443211222222222 223457899999999887765 45676643334444311
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEee--CCCCcCeEEEEEccCCCEEEEEecC
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
. .+..+.... ...+.+++|.|++..++++.+|.+.. ..+.|+.-.... ..-......+.|..+++.+++ +..
T Consensus 249 ~--~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 249 S--KPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred c--cccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 1 111111100 12477899999999888888886654 445444332211 111345778888877777775 467
Q ss_pred CcEEEEeC
Q 001310 1000 GTLSIHEA 1007 (1103)
Q Consensus 1000 g~v~vWd~ 1007 (1103)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88887763
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.36 E-value=0.068 Score=38.17 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEec
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~ 426 (1103)
....|.+++|+|...+||.++.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999993
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.35 E-value=2.5 Score=41.41 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=78.0
Q ss_pred cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC--------CceEEEEeeecCCccEEEEEECCCeEE
Q 001310 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENIHFIFSISVDGKIK 512 (1103)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~ 512 (1103)
..+.+.-..+|+|+ +.+..-.|-.- +.....|..-.-+.+|. .--+.++|.. ..-.+.+.-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccc-cCcEEEEEccCceEEe
Confidence 34566777899999 43322222111 11111222222222332 2234456642 2223455667777788
Q ss_pred EEEcC--CCC-----eeEEecC----CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce
Q 001310 513 AWLYD--SLG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581 (1103)
Q Consensus 513 iwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 581 (1103)
-||.+ ++. .+..++. .....-.+++..+|++.+++-. .++|+..|..+|+.+..+.-.. ..+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~qi 256 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQI 256 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cce
Confidence 88843 222 2222222 1112335666778888877764 4569999999999999998877 889
Q ss_pred EEEEEcCC
Q 001310 582 SVVHFDTA 589 (1103)
Q Consensus 582 ~~~~~~~~ 589 (1103)
++++|...
T Consensus 257 tsccFgGk 264 (310)
T KOG4499|consen 257 TSCCFGGK 264 (310)
T ss_pred EEEEecCC
Confidence 99999754
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.15 E-value=1.3 Score=52.30 Aligned_cols=215 Identities=11% Similarity=0.083 Sum_probs=116.0
Q ss_pred CeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C------CeEEEEEcCCceee--EEecCCCCCeeEEE
Q 001310 780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G------GVISLYIVMTFKTI--LTIMPPSPTATSLA 850 (1103)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~ 850 (1103)
+..+|+.++.-.....++ ....-.++++. ++...++|+ + .++..||..+.+=. ..+...........
T Consensus 303 ve~yd~~~~~w~~~a~m~---~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMP---SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred eEEecCCcCcEeecCCCC---cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 445555555323333332 22223344444 445666665 5 24778887765422 22222222222222
Q ss_pred EcCCCCCEEEEEeCCC-----eEEEEEcCCce--eEEEeccCCCCEEEEEEccCCCEEEEEeCCC------eEEEEEcCC
Q 001310 851 FNPHDNNVIAIGMDDS-----TILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFVWDVDG 917 (1103)
Q Consensus 851 ~s~~d~~~lasg~~dg-----~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg------~I~iwd~~~ 917 (1103)
+ +|.+.|+|+.|| +|..||..+.+ .+..+.........+ .-+|++.++||.|+ ++..||..+
T Consensus 379 l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 L---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E---CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 2 788999999997 67788877654 222222111222222 23688888888665 477889888
Q ss_pred CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCC-----eEEEEECCCceEEEEeeCCCCcCeEEEE-EccCC
Q 001310 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET-----HLAIYEAEELTCLKQWFPISSVPISQAT-FSCDC 990 (1103)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~-----~v~iwd~~~~~~~~~~~~~h~~~v~~l~-fs~dg 990 (1103)
++......+...+... .++ .-++.+.++ |.|+ +|..||..+.+....-.. ..+...+. ..-++
T Consensus 454 ~~W~~~~~M~~~R~~~-------g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m--~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGF-------GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM--TSPRSAVGVVVLGG 523 (571)
T ss_pred CceeecCCcccccccc-------eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccC--ccccccccEEEECC
Confidence 7766655555554432 122 334555555 4444 488899887765543111 11222222 22456
Q ss_pred CEEEEEecCC-----cEEEEeCCCceeE
Q 001310 991 RMVFTSFVDG-----TLSIHEASNLEVQ 1013 (1103)
Q Consensus 991 ~~l~t~~~dg-----~v~vWd~~~~~~~ 1013 (1103)
+..++|+.|| +|..||..+.+..
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCcee
Confidence 7778888775 5777877776654
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=4.8 Score=41.37 Aligned_cols=171 Identities=12% Similarity=0.178 Sum_probs=105.5
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 001310 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1103)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~ 918 (1103)
.+....+.++.|+| +.+.|++......-.|+=..+|+.+.++.- --.....+.+..+|++.++--.++.+.++.++.+
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44455699999999 666777666666666776667888877642 1123456888888888888888999999988875
Q ss_pred ce-eeeeeeecCCCcccC-CCCceEEEEcCCCCEEEEEeCC-eEEEEECCCce-EEE-EeeCCC-------CcCeEEEEE
Q 001310 919 GI-QTCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLK-QWFPIS-------SVPISQATF 986 (1103)
Q Consensus 919 ~~-~~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~l~~~~d~-~v~iwd~~~~~-~~~-~~~~~h-------~~~v~~l~f 986 (1103)
.. ......+..-+.... ......++|+|.+..|.++.+. -+.||.++.+. .+. .....+ -..|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 32 111111111111111 2357889999999998887543 35555554322 111 001111 235677778
Q ss_pred ccC-CCEEEEEecCCcEEEEeCCCce
Q 001310 987 SCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 987 s~d-g~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
.+. +..|+-+.+++.+.-.|....-
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCe
Confidence 764 4556666677777777776553
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.01 E-value=8.1 Score=43.69 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=40.9
Q ss_pred eEEEEcCCCCEEEEEeC--CeEEEEECCCce--EEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 940 THIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 940 ~~l~fs~dg~~l~~~~d--~~v~iwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
--++|.|....+|++++ +.|.||.+.... .+.++.-..+.+-.+++|-.|...|+..|
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVG 403 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVG 403 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEec
Confidence 45899999999999755 579999886422 12222223467778899988887766554
No 422
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=0.07 Score=51.88 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=65.8
Q ss_pred CEEEEE-cCCeEEEEEcCCceeeE-EecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCC-CCEEE
Q 001310 815 AYLFSA-SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG 891 (1103)
Q Consensus 815 ~~l~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~ 891 (1103)
.-+++| ++|.|.+|...-..... ....-...|-++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 334444 58999999886222211 1111222333332222255699999999999999999988888877787 55555
Q ss_pred EEEccCCCEEEEE--eCCCeEEEEEcCC
Q 001310 892 LVFSDALNILVSS--GGDAQIFVWDVDG 917 (1103)
Q Consensus 892 l~~s~dg~~l~s~--s~dg~I~iwd~~~ 917 (1103)
+..+..++.++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 5555556666666 6677777777664
No 423
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.085 Score=62.46 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=74.6
Q ss_pred cEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC
Q 001310 500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1103)
..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-. +|.|.+||+..++.++.+..+....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 4688888888888877765322 1222334568999999999999998865 6779999999999999888776444
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
..+..+.+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555566666667788777776 5554
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.76 E-value=1.5 Score=42.91 Aligned_cols=159 Identities=11% Similarity=0.099 Sum_probs=89.9
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCC---eEEEE
Q 001310 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY 962 (1103)
Q Consensus 890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~---~v~iw 962 (1103)
..+.-+.. ..|..+.....|.+|++...+......+.+.. .|..+.++..|++|++- ... .+++|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~-------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVG-------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchh-------heeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444442 34434456677999999965544444455442 68899999999999993 222 45554
Q ss_pred ---ECC--CceEEEEeeCCC---------------------CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCcee-EEe
Q 001310 963 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCR 1015 (1103)
Q Consensus 963 ---d~~--~~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~-~~~ 1015 (1103)
+.. ..+.+.....|| +.++.+++..|-..-|++|+ ++.+.+|.+..... ...
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~ 171 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEK 171 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEeccc
Confidence 332 222332222232 34556677767544556565 56899999876654 333
Q ss_pred eccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
+...+|..... .|-..+.+..+++- ++++|..+ +-.+++.++
T Consensus 172 ~~~lDFe~~l~----------~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 172 FSFLDFERSLI----------DHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ccEEechhhhh----------heecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence 33333332221 22333445555555 56777665 556787765
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.32 E-value=1.1 Score=52.14 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=77.5
Q ss_pred cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEc-----
Q 001310 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 516 (1103)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~----- 516 (1103)
...-+.-|.-++ ..+.-+...++.|||...+...+.-. ...+.|.++.|...++++.+++.+..+.|.++.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455555 34444445579999998888654433 4578899999999999999999999999998843
Q ss_pred CCCCe----e--EEecC-CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 517 DSLGA----R--VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 517 ~~~~~----~--~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
.+... . ..+.. ..++|...+|.++|..++.++. .+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence 11111 1 12222 3368899999999988877642 48887743
No 426
>PHA03098 kelch-like protein; Provisional
Probab=94.17 E-value=2.2 Score=50.69 Aligned_cols=188 Identities=10% Similarity=-0.010 Sum_probs=95.9
Q ss_pred cCCCEEEEEc-C------CeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCce
Q 001310 812 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE 877 (1103)
Q Consensus 812 ~d~~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~ 877 (1103)
.++..++.|+ + ..+..||..+.+-... +.........+++ ++++.+.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666654 2 2477888776554221 1111122222222 67788888865 357788887654
Q ss_pred eE--EEeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 878 VI--SKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 878 ~~--~~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
-. ..+....... ++ ..-++++.+.||.+ ..+..||..+++......+. .... ...+...+++
T Consensus 370 W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~------~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHY------GGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cccc------CceEEEECCE
Confidence 22 1121111111 12 22367788887742 35888998876543322211 1111 1122334566
Q ss_pred EEEEE-eC--------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310 950 RFLLV-HE--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus 950 ~l~~~-~d--------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
..+.| .+ ..+.+||..+++....-.......-.++ ...+++.++.||.+ ..|.+||..+.+..
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 66664 21 2388999887764432111111111112 22377777777754 46888998887654
No 427
>PHA03098 kelch-like protein; Provisional
Probab=94.10 E-value=2.3 Score=50.59 Aligned_cols=153 Identities=8% Similarity=-0.018 Sum_probs=73.1
Q ss_pred CccEEEEEECC-----CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC--ceeEEEEeCCCCeeEEE
Q 001310 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 570 (1103)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 570 (1103)
++.+.+.|+.+ ..+..||..+.+-..............+..-+++..+.|+....+ -..+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45667777765 246667766544322111111111111223456666666532221 24588999887654332
Q ss_pred EecccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
-.... ..... +++ ..++..++.||.+ ..+.+||..+++....-...........+ .-+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC--IFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE--EECCEEEEEcCC
Confidence 21111 01111 222 2245555566532 23888998877654332211111111122 236777777765
Q ss_pred C-----CeEEEEEcCCCC
Q 001310 643 E-----NRIKILETPESN 655 (1103)
Q Consensus 643 d-----g~i~iw~~~~~~ 655 (1103)
+ +.+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467778777653
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.09 E-value=1.5 Score=51.16 Aligned_cols=122 Identities=8% Similarity=0.089 Sum_probs=76.1
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec-cCCCCEEEEEEc--cCCCEEEEEeCCCeEEEEEc
Q 001310 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 915 (1103)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~s~dg~I~iwd~ 915 (1103)
+...-...+-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-...|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334555555555 45555555555699999999886433222 356789999885 78999999999999999854
Q ss_pred CC----CceeeeeeeecC--CCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001310 916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1103)
Q Consensus 916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~ 964 (1103)
.. ........++.. ..+.+ .+|.+..|-++|.+++ |.++++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 21 111111111111 12222 2688999999998655 45667888764
No 429
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.03 E-value=0.18 Score=49.14 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=65.2
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEE-EEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~-~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1103)
-++.|++|+.+|.|.+|++..-...... ...-...|.++ .-..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 3578999999999999998732111110 11112223222 2233344 68889999999999999998887777776
Q ss_pred -CceEEEEeeecCCccEEEEE--ECCCeEEEEEcCC
Q 001310 486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 518 (1103)
Q Consensus 486 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~ 518 (1103)
.++....... .+..++.+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence 4444443322 33455555 6666677776653
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=4.9 Score=46.59 Aligned_cols=180 Identities=11% Similarity=0.108 Sum_probs=98.4
Q ss_pred eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--e--ccCCCCEEEEEEccCCC
Q 001310 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 899 (1103)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~ 899 (1103)
.|+||++. |..+.++.-..+.+..+.|+. + .-|++...+|++++|++.. +.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 47888874 666666554455889999996 4 4667788999999999873 32222 1 22233466666666664
Q ss_pred EEEEEeCCCeEE-EEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE--EEEeC---C-eEEEEECCCceEEEE
Q 001310 900 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF--LLVHE---T-HLAIYEAEELTCLKQ 972 (1103)
Q Consensus 900 ~l~s~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l--~~~~d---~-~v~iwd~~~~~~~~~ 972 (1103)
.+.+ .+|.+. +-+++..... .++...+... .-.+...-+++... ...-+ + .+..-+..+.+...
T Consensus 141 avlt--~~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~- 211 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA- 211 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceecccccccc-
Confidence 4443 344333 3333331111 1111111111 11233333332211 11111 1 11111111122211
Q ss_pred eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 973 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+... ...+..+..||+.++|+--..+|.|.+-+++..+..|.+.
T Consensus 212 ~~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 LSWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cCCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111 3567889999999999999999999999999888888777
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=93.60 E-value=3.3 Score=48.07 Aligned_cols=185 Identities=12% Similarity=-0.008 Sum_probs=95.9
Q ss_pred cCCCEEEEEc-C-----CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcee--E
Q 001310 812 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEV--I 879 (1103)
Q Consensus 812 ~d~~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~~--~ 879 (1103)
.++..+++|+ + ..+..||..+++-.. .+.........++ - ++++.++|+.+ ..+..||..+++- +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 2 246778877654322 2221222222222 3 67788888864 3678888765432 2
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEeCCC---eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC
Q 001310 880 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1103)
Q Consensus 880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 956 (1103)
..+....... .+..-+|+..+.||.++ .+..||..+++-.....+..+.. ...+..-+|++.++|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~--------~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY--------KSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc--------cceEEEECCEEEEEC--
Confidence 2222111111 12233688888888654 46788887765433222222211 112223456666665
Q ss_pred CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcee
Q 001310 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1103)
Q Consensus 957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~ 1012 (1103)
|.+.+||..+++-...-...+...-.+++ .-+|+..++||.+ .+|..||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 35778888776554321111111111222 3477888888754 3577888777664
No 432
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=93.56 E-value=0.081 Score=48.59 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=58.5
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM 145 (1103)
Q Consensus 72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~ 145 (1103)
++|+++-+.||||+.+|..++|..++++.-..+.....+..+.|+.+.+..++.+++....+... .+.+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 99999999999999999999999999997766665567778888888887777665543332221 144455555
Q ss_pred HHHHH
Q 001310 146 LELKQ 150 (1103)
Q Consensus 146 ~~l~~ 150 (1103)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 55554
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=93.46 E-value=14 Score=40.45 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=92.4
Q ss_pred CCCeeEEEEecCCCEEEEEcCCeEEEE-EcCCceeeEEe-cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310 802 QEAVPCFALSKNDAYLFSASGGVISLY-IVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~dg~i~iw-d~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1103)
...+.++.+.+++.+++++..|.+..- |- .++.-... ......++++++.+ +++.+++| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 456788999999999988888865432 21 12212222 23446889999999 77776665 4676653234444322
Q ss_pred EEecc----CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe
Q 001310 880 SKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1103)
Q Consensus 880 ~~l~~----h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~ 955 (1103)
..... -...+.++++.+++..++ ++.+|.|. ...+.|+.-. .+....+. ......+.|..+++.+++|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~--~~~~~~~~---~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWE--KDPVGEEV---PSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCe--ECCcCCCC---CcceEEEEEeCCCceEEECC
Confidence 22111 123578899999877655 55677554 4555544211 11111111 12577888988999999999
Q ss_pred CCeEEEEE
Q 001310 956 ETHLAIYE 963 (1103)
Q Consensus 956 d~~v~iwd 963 (1103)
.|.|.-|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 99888776
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.39 E-value=11 Score=39.07 Aligned_cols=214 Identities=12% Similarity=0.128 Sum_probs=123.7
Q ss_pred cEEEEEEecCCCceEEEEEcCCCceEEEeCC------CCc-eeEEeec-----CCCceEEEEeeecC------Cc----c
Q 001310 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TGS-RTYSFEG-----HGAPVYSLCPHAKE------NI----H 500 (1103)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~~-~~~~~~~-----~~~~v~~~~~~~~~------~~----~ 500 (1103)
.-+.|+|+|.+. +-++....+...+||.. ..+ .+-++.. .....+.+.|+... ++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 467899999887 67777778899999986 122 2233332 12345666654321 11 2
Q ss_pred EEEEEECCCeEEEEEcCCCCe-----eEEecC--CCccEEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeE--E
Q 001310 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDA--PGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 569 (1103)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~--~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 569 (1103)
.++.+++||+|.-|...-... ...+.. ...-...+++.. .+.+|+.+-. ..++|.++|-.=.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997533222 122221 122334555553 3667766543 2566888875422211 0
Q ss_pred EEeccccc--CCc-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec----
Q 001310 570 TYQGLQLQ--HNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1103)
Q Consensus 570 ~~~~~~~~--~~~-----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1103)
.+...... -.+ |+...-.++...=+.|..-|.|-+||. .|+.++++...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01111000 000 111111222222233344578999997 578888887666666667888765
Q ss_pred --CCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1103)
Q Consensus 633 --~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1103)
.|.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 466777777799999999998887776654
No 435
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.36 E-value=11 Score=40.00 Aligned_cols=188 Identities=10% Similarity=0.035 Sum_probs=102.5
Q ss_pred eeEEEEecCCCEEEEEc-------------CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCC----CEEEE
Q 001310 805 VPCFALSKNDAYLFSAS-------------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 861 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~-------------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~las 861 (1103)
|..+...+++++-+.=. .-++.+||+.+++.++++.-+ ......+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 44556666666555421 126889999999988876532 34667787766222 24444
Q ss_pred Ee-CCCeEEEEEcCCceeEEEeccC-------------------CCCEEEEEEcc---CCCEEEEEeCCCeEEEEEcCCC
Q 001310 862 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 918 (1103)
Q Consensus 862 g~-~dg~v~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---dg~~l~s~s~dg~I~iwd~~~~ 918 (1103)
.. ..+.|.|+|+.+++..+.+..+ .+.+..++.+| ||++|....-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 43 3458999999998765554432 12366666655 666666555443 234444331
Q ss_pred ceeee-----e----eeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc----eEEEEeeCCC-CcCeEE
Q 001310 919 GIQTC-----R----SLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL----TCLKQWFPIS-SVPISQ 983 (1103)
Q Consensus 919 ~~~~~-----~----~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~----~~~~~~~~~h-~~~v~~ 983 (1103)
-+... . .++.. |... .....++++++|.+..+- ..+.|..|+..+. .......... -..+.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 11110 0 01110 0000 135678999999988884 8889999999861 1111112222 356788
Q ss_pred EEEcc--CCCEEEEE
Q 001310 984 ATFSC--DCRMVFTS 996 (1103)
Q Consensus 984 l~fs~--dg~~l~t~ 996 (1103)
+.+.+ +|.+.+.+
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77766655
No 436
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.35 E-value=11 Score=39.03 Aligned_cols=243 Identities=11% Similarity=0.086 Sum_probs=121.7
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCC-------CeeEeccc-----cccceeeeEEecCCceeeeeccCCceEec
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1103)
.-+.++++|.+.+.++....+...+||.... ..+..+.. .....+.+.|+.... ..+.
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~----------F~vt 93 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT----------FVVS 93 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc----------eEEc
Confidence 3578999999988888888899999998621 11222221 112333444442211 1111
Q ss_pred CCCCCCCccceeeccccccccccccccCCcccee-eeccCccccccEEEEEEe--cCCcEEEEeec-CceEEEeecCCCc
Q 001310 692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LLLPSKVKANKISRLTYN--NGGQAIFALAS-NGVHLMWRWPRND 767 (1103)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s--~~g~~l~~~~~-dg~i~vw~~~~~~ 767 (1103)
.........++.+++||+|.-|............ +.........--..+++. ..+.+|.++.- +++|.++|-.-..
T Consensus 94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 1111122346788999999999965433311111 111111112222344444 33566655543 5888888754433
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE-cCCeEEEEEcCCceeeEEecC--CCC
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMP--PSP 844 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~dg~i~iwd~~~~~~~~~~~~--~~~ 844 (1103)
....+......- ..+. ..+.+.-.+..--|+-..-.++++.=+.+ +-|.|-+||.. |..++++.. .-.
T Consensus 174 ~~~~g~F~DP~i------Pagy--APFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LN 244 (336)
T TIGR03118 174 PPLPGSFIDPAL------PAGY--APFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLN 244 (336)
T ss_pred ccCCCCccCCCC------CCCC--CCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCccc
Confidence 221111111000 0000 00000000000001111111222111112 23679999985 777777742 223
Q ss_pred CeeEEEEcC-----CCCCEEEEEeCCCeEEEEEcCCceeEEEeccC
Q 001310 845 TATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1103)
Q Consensus 845 ~i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1103)
.-+.|+..| -.+.+|+---.||+|-.+|..+|+.+..+...
T Consensus 245 aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 245 APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 456666644 25778887788999999999999988877753
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.32 E-value=12 Score=45.23 Aligned_cols=136 Identities=14% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCcEEEEECCCCCeeeeeeeeEeecc---ccccceeeeec-cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc
Q 001310 356 VGDTGLWDVNSGQKLFIRNFKVWDIG---ACSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431 (1103)
Q Consensus 356 d~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~ 431 (1103)
|+.+.+||-..... .+.+++--+.. .+...++.... ..-.-.|..+.+||+|++||..|..| |.|-.+-.. .
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~ 116 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--W 116 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--c
Confidence 47788888554332 22222221111 11123333222 22346899999999999999998877 444444210 0
Q ss_pred ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC-CccEEEEEECCCe
Q 001310 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVDGK 510 (1103)
Q Consensus 432 ~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~ 510 (1103)
.....+.+-...|.|=.+.=+.. +.. ..+...|..+.|||.. ++..|+.-..|++
T Consensus 117 g~~~~~~~g~~~i~Crt~~v~~~---~~~---------------------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~ 172 (717)
T PF10168_consen 117 GKNGEFEDGKKEINCRTVPVDER---FFT---------------------SNSSLEIKQVRWHPWSESDSHLVVLTSDNT 172 (717)
T ss_pred CccccccCCCcceeEEEEEechh---hcc---------------------CCCCceEEEEEEcCCCCCCCeEEEEecCCE
Confidence 00001222222233322221111 111 1123345556666653 3566777777888
Q ss_pred EEEEEcCCC
Q 001310 511 IKAWLYDSL 519 (1103)
Q Consensus 511 i~iwd~~~~ 519 (1103)
+|+||+...
T Consensus 173 lR~y~~~~~ 181 (717)
T PF10168_consen 173 LRLYDISDP 181 (717)
T ss_pred EEEEecCCC
Confidence 888877543
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=6.7 Score=45.59 Aligned_cols=207 Identities=13% Similarity=0.149 Sum_probs=99.3
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
+++-+|..+|....=+. +.--.|+|++.. |..+.+. +-.|. .+..+.||.+..+|+ .
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~------------------~w~~~-~lI~mgWs~~eeLI~-v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRI------------------LWKHG-ELIGMGWSDDEELIC-V 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHHH------------------HhcCC-CeeeecccCCceEEE-E
Confidence 35556666663321111 233568888864 5544331 11243 888999997776655 4
Q ss_pred eCCCeEEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCCceEEEE
Q 001310 415 YSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLC 492 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~ 492 (1103)
..+|+++||++.... +... .........|..+.|..+|- .+.+ .+|.+.+-+-.....++++.. ........|
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 699999999997532 2211 01122334566667766663 3333 344444433122212233221 111111112
Q ss_pred eeecCC---ccEEEEEECCCeEEEEEcCCCC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 493 PHAKEN---IHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 493 ~~~~~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
|....+ ...++-....-...++..+... ....+......+..+.+||+.++|+.-.. .|.|.+-+....+..
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQIL 251 (829)
T ss_pred eeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhhh
Confidence 211111 1111111100001111111111 11122223457788999999999998765 455877777766666
Q ss_pred EEEec
Q 001310 569 RTYQG 573 (1103)
Q Consensus 569 ~~~~~ 573 (1103)
..+..
T Consensus 252 ce~~~ 256 (829)
T KOG2280|consen 252 CEFNC 256 (829)
T ss_pred hccCC
Confidence 66553
No 439
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.20 E-value=11 Score=38.32 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=102.3
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeee
Q 001310 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1103)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~ 924 (1103)
.-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||...++-+.. .|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677788 88888888888888888888888766555555556778888999877764443 46666666655433
Q ss_pred eeecCCCcccCCCCceEEEEcCCCCEEEEEeCC----------eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1103)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----------~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1103)
+..+..+.. .......|.++|++-.++..| .|.+|+.. ....-..|+..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 357789999999999886433 24444433 345567789999999888
Q ss_pred EEecCCcEEEEeCCCc
Q 001310 995 TSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 995 t~~~dg~v~vWd~~~~ 1010 (1103)
+.-.+..|..-|..++
T Consensus 205 aslagnaiaridp~~~ 220 (353)
T COG4257 205 ASLAGNAIARIDPFAG 220 (353)
T ss_pred EeccccceEEcccccC
Confidence 7777777877777766
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.20 E-value=2 Score=51.58 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=59.4
Q ss_pred CcCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------c--eeEEeeccccccCCCCCCCceeeEeeccCCceeeE
Q 001310 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPH 1045 (1103)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1045 (1103)
...|..+.++++|++|+..|..| |.|-.+.. | +..|+..+.+-.-+ ...++ +.-.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~----------~~~~~--~~i~ 150 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF----------TSNSS--LEIK 150 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc----------cCCCC--ceEE
Confidence 45788899999999999988765 55545431 1 12333332211000 01122 3335
Q ss_pred EEEECCCC--CcEEEEEecCCcEEEEccCCCCCCCccCCcc
Q 001310 1046 AIAAHPLK--PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1084 (1103)
Q Consensus 1046 ~~~~~p~~--~~~l~~~~~dg~v~vw~~~~~~~~w~~~~~~ 1084 (1103)
-+.|||.. +..|++=..|+++++||+.....-|.+.+..
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~ 191 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVLSLS 191 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence 67888862 4677788899999999998777777776644
No 441
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=93.17 E-value=0.1 Score=48.61 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=44.2
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchh
Q 001310 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1103)
Q Consensus 72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1103)
++|+|+-+.|++|+..|..++|..++.+.-..+.....+.+++|..+....++.+.+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~ 96 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENE 96 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccH
Confidence 899999999999999999999999999977766655666778887766666555443
No 442
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=5.4 Score=38.58 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=93.8
Q ss_pred CCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE
Q 001310 813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 889 (1103)
Q Consensus 813 d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 889 (1103)
+|.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+.+-...+|.-..+|.++.+++..+. -.+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556666665 35699999999988776543322221111111033455556778999999999988777665 22333
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCce
Q 001310 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 968 (1103)
Q Consensus 890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~ 968 (1103)
..++ .|++-|..++...+++.-|.++-.......+ +..|... ..+..+.|- ||...|- -....|...|.++|+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 4443 4666677766666777777665332221111 1111110 011122221 3333332 233444444555555
Q ss_pred EEEEe-----------eCCCCcCeEEEEEccCC-CEEEEE
Q 001310 969 CLKQW-----------FPISSVPISQATFSCDC-RMVFTS 996 (1103)
Q Consensus 969 ~~~~~-----------~~~h~~~v~~l~fs~dg-~~l~t~ 996 (1103)
.+.-. ...|..-...+++.|++ ++++||
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44321 22234456788999887 666665
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=1 Score=54.16 Aligned_cols=146 Identities=8% Similarity=0.049 Sum_probs=95.2
Q ss_pred CCCeeEEEEecCCCEEEEEc--C-CeEEEEEcCCceeeE-----EecC------CCCCeeEEEEcCCCCCEEEEEeCCCe
Q 001310 802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 867 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~--d-g~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~ 867 (1103)
.-++..++..+|+...++.. + -.|..||+.+...-+ .+.. ...-..++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45667778888887776654 3 358899987543222 1211 12344667788743345666778898
Q ss_pred EEEEEcCCce-eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC
Q 001310 868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1103)
Q Consensus 868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 946 (1103)
|++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9888765432 223333 4567899999999999999999999998876653211 122222111 24799999998
Q ss_pred CCCEEEE
Q 001310 947 DQTRFLL 953 (1103)
Q Consensus 947 dg~~l~~ 953 (1103)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 444
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.86 E-value=10 Score=42.51 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=112.2
Q ss_pred EecCCCEEEEEcCCeEEEEEcCCceeeEEecCCC--CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCC-
Q 001310 810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 886 (1103)
Q Consensus 810 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 886 (1103)
..-|++.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456777666667888888888887665443221 2333333333 564 7778899999999998999888877655
Q ss_pred CCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe--CCeEEEEEC
Q 001310 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 964 (1103)
Q Consensus 887 ~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~~v~iwd~ 964 (1103)
-.+..-..-.++..++ .+.++.+...|-.+|+..-.......... .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1222222333443333 33678788777777765332222110000 111111133444444433 557888888
Q ss_pred CCceEEEEeeCCCCcC---eEEEEEccC-----CCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310 965 EELTCLKQWFPISSVP---ISQATFSCD-----CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus 965 ~~~~~~~~~~~~h~~~---v~~l~fs~d-----g~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
.+|+........+... +........ +.-+..++.++.+...|..+|+.+-++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 8888776632212111 100111111 12235566778888999999998877774
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.75 E-value=15 Score=39.01 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=90.8
Q ss_pred ceEEEeCCCCceeEEeecC------CCceEEEEeeecCC----ccEEEEEECCCeEEEEEcCCCCeeEEecCCC------
Q 001310 466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 529 (1103)
.|.+||+.+++.++++.-. .+.+..+.+...+. +...++-+..+.|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778999999988776532 35567777765432 2334444555689999998876554332211
Q ss_pred -------------ccEEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------eEEEEecccccCC
Q 001310 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1103)
Q Consensus 530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1103)
..+..++.+| +|+.|+.....+ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1255566655 666666554322 12222221 10 11111 111 13
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEEc-CCCCCCCCceEEEec--CCCEEEEE
Q 001310 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTID-AGGGLPENPRICFNK--NGTLLAVI 640 (1103)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~g~~l~~~ 640 (1103)
....++++++|..+++--..+.|..|+..+. +....+. .......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 4567788898888888889999999998761 1222222 222234456777877 66554444
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.60 E-value=4 Score=45.51 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=82.4
Q ss_pred CCeeEEEEcCCCCCEEEEEe-----------CCC-eEEEEEcCC--ce--eEEEeccCCCCEEEEEEccCCCEEEEEeCC
Q 001310 844 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD 907 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d 907 (1103)
.....++|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| ++++ +..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 4567889998 787766542 223 677776543 32 233444334456889999998 5553 444
Q ss_pred CeEEEEEcCCC-cee--eeeeeecCCCc-ccCCCCceEEEEcCCCCEEEE-EeC-------------------CeEEEEE
Q 001310 908 AQIFVWDVDGW-GIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 963 (1103)
Q Consensus 908 g~I~iwd~~~~-~~~--~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d-------------------~~v~iwd 963 (1103)
...++.|.+.. ... ....+..+... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334455431 111 11122222211 001124678999999987775 411 3466666
Q ss_pred CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
.++++. ..+..+ -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence 665443 233333 34566899999998877644
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=3.8 Score=44.29 Aligned_cols=159 Identities=8% Similarity=0.046 Sum_probs=93.9
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--eeEEEe-ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1103)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~ 921 (1103)
..+.+-|.. .++.|+ +...|.+.=|-+... ...-.+ ....++|.++.||+|.+.||+--.|.+|.+.+....+..
T Consensus 24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 345566654 333333 333455555554421 112222 235679999999999999999999999999998654322
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe--cC
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF--VD 999 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~--~d 999 (1103)
.........+. ..|....|+.. .-+|.-.+..+.+|-+.....-..+...|+-.|.=..|.++.+.+.-++ ..
T Consensus 102 l~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~ 176 (657)
T KOG2377|consen 102 LEYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLE 176 (657)
T ss_pred hHHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccc
Confidence 21111111111 24888889877 6667666766777776543332233556777888888888887644332 34
Q ss_pred CcEEEEeCCCc
Q 001310 1000 GTLSIHEASNL 1010 (1103)
Q Consensus 1000 g~v~vWd~~~~ 1010 (1103)
+++-=+-+.++
T Consensus 177 n~lnpf~~~~~ 187 (657)
T KOG2377|consen 177 NVLNPFHFRAG 187 (657)
T ss_pred cccccEEEeec
Confidence 44444444433
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.10 E-value=9.6 Score=42.50 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=87.8
Q ss_pred eeEEEEecCCCEEEEEcCCeEE-EEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----
Q 001310 805 VPCFALSKNDAYLFSASGGVIS-LYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---- 877 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~dg~i~-iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---- 877 (1103)
...+..++||.+++.+..|.+. -||- +... ..-......++++.+.+ ++.+++++ .+|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence 4556778999999999877643 3433 2221 11222455789999998 77777655 556543 3444443
Q ss_pred -eEEEeccC--CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310 878 -VISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1103)
Q Consensus 878 -~~~~l~~h--~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 954 (1103)
........ ...+.++.|.+++..++ ++..|.+... .+.|+.-. ..+...+ .......+.|.++++.+++|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s-~D~G~tW~--~~~~~~~---~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRS-TDGGKSWK--RDKGADN---IAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEe-CCCCccee--EccccCC---CCcceeEEEEcCCCceEEEe
Confidence 22222211 23488999998876655 5677866555 34444211 1111111 11357899999999999999
Q ss_pred eCCeEEEE
Q 001310 955 HETHLAIY 962 (1103)
Q Consensus 955 ~d~~v~iw 962 (1103)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 99987665
No 449
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.84 E-value=10 Score=42.31 Aligned_cols=103 Identities=9% Similarity=0.102 Sum_probs=57.6
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-eEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE
Q 001310 887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1103)
Q Consensus 887 ~~V~~l~~s~dg~~l~s~s-----------~dg-~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 952 (1103)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+......+.... .....++|.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l------~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL------SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC------CCccceeEecCC-EEE
Confidence 3467789999998887653 223 677776543 3332222222111 135789999999 444
Q ss_pred EEeCCeEEEE-ECCC-------ceEEEEeeCC----CCcCeEEEEEccCCCEEEEEe
Q 001310 953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 953 ~~~d~~v~iw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
+....|..| |.+. .+.+..-+.. +......++|.|||++.++-+
T Consensus 87 -~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 -ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 444455544 4431 1122221211 134477899999998777555
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.59 E-value=43 Score=41.54 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=103.7
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEcCCeEEEEEcCCc---------------eeeEEecC---CCCCeeEEEEcCCC
Q 001310 801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 855 (1103)
Q Consensus 801 ~~~~v~~l~~s---~----d~~~l~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 855 (1103)
...+|..|+|+ . ..++|++-....+.|+...-. ..+.++.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45688888887 2 235788777777888772211 12223321 22355677888877
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1103)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1103)
.+.||+.+..|...||++..+... +.. . +-+.....|.| +.|... .
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e-----------~------ 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEE-----------L------ 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCcc-----------c------
Confidence 778888888888888887211100 000 1 11112222333 222221 0
Q ss_pred CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEE-EeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCc
Q 001310 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
..-..+.|.++-..|++.....+.++|+++..... .........|..+.-+++. .+++.- ....|...++.+.
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 13457889999999999999999999999876643 2223346788889988872 222222 2367888888773
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.07 E-value=0.33 Score=56.41 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=84.4
Q ss_pred CeEEEEEcC--CceeeEEe-----cCCCCCeeEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEE
Q 001310 823 GVISLYIVM--TFKTILTI-----MPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1103)
Q Consensus 823 g~i~iwd~~--~~~~~~~~-----~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1103)
|...+||+. .|+....+ ......+.-+.|.|. +.-++..+..+++|++....+... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 677888875 34332222 222334444444431 456777888889998887765432 44556776666554
Q ss_pred -----------EccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-------CCE--EEE
Q 001310 894 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-------QTR--FLL 953 (1103)
Q Consensus 894 -----------~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-------g~~--l~~ 953 (1103)
.||||+.+|.++.||.++.|-+.-......+++..-+.|..+ ..|..+ |... +.+ +++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~-p~vC~l-c~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH-PRVCWL-CHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC-Cceeee-eccccccCCccceeEEEEe
Confidence 589999999999999999998764333333444444333321 023333 4332 222 233
Q ss_pred Ee--CCeEEEEECCCceEE
Q 001310 954 VH--ETHLAIYEAEELTCL 970 (1103)
Q Consensus 954 ~~--d~~v~iwd~~~~~~~ 970 (1103)
+. +..+++|.....+|+
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 32 346888888777776
No 452
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.80 E-value=35 Score=44.11 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=87.2
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.|-..++.|.-+|+|.++ =. .|+.++.||..++. |..- -..-...++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 466677888888888753 22 56888888876542 2100 01123455556666677766
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC------cee--EEeec
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SRT--YSFEG 483 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~~--~~~~~ 483 (1103)
| =+.+ .+-|+..+.... ..-..|.+...+++|+- .+.++-....+.+|++... ++. ..+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 244555543111 12335777888999982 3666666667799998654 111 22233
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1103)
......++.++ ++ .|+.+..+|.++.=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33345556663 22 688888899887766653
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.72 E-value=12 Score=36.95 Aligned_cols=146 Identities=12% Similarity=0.164 Sum_probs=87.2
Q ss_pred CEEEEEeCCCeEEEEEcC--CceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC------eEEE---EEcCCCceeeeee
Q 001310 857 NVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 925 (1103)
Q Consensus 857 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg------~I~i---wd~~~~~~~~~~~ 925 (1103)
..|..+.....|.+|++. ..+.+.+|..- +.|..++++..|++|+|--.+. .+++ |+....+.... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-E
Confidence 455555667789999998 34566777644 7899999999999999964322 4555 44331111010 0
Q ss_pred eecCCCc------------------ccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceE-EEE--ee------CCC-
Q 001310 926 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LKQ--WF------PIS- 977 (1103)
Q Consensus 926 ~~~~~~~------------------~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~-~~~--~~------~~h- 977 (1103)
.+. .|| .+...++.+++.-|-...|++|.++.+.+|.+..... ... +. -.|
T Consensus 107 vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000 010 0111367888888888888899999999998864443 110 00 011
Q ss_pred -CcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 978 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 978 -~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
+-....++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2234455554 45777665 5567777653
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=1.7 Score=46.88 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
.+++|.++.||+|.+ ++|+--.|++|.+.+....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 345999999999998 799999999999999854432221000 01223456888999865 7788
Q ss_pred EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
.....| +.+|-+.... +..+..+.|...|..-.|.++.+-.+|+++-..+++.=+-+.++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 777777 7888776543 33334567888999999999988433333323444443444443
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=90.41 E-value=14 Score=42.95 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=71.8
Q ss_pred CccEEEEEECCC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1103)
Q Consensus 498 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1103)
++.+.+.|+.++ .+..||..+.+-..............+..-+|+..+.|+.++. ...+..||..+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 556667776543 4677776543322211111111122223346766677665332 3557889988765543221111
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEE
Q 001310 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 650 (1103)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----g~i~iw~ 650 (1103)
.......++ -++...+.| |.+.+||..+++-...-+....... .+++ .-+|+..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~-~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN-PELI-IVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc-cEEE-EECCEEEEECCcCCCcccceEEEEE
Confidence 011222222 234444444 3577899887665433322211111 1222 2357777887754 3466777
Q ss_pred cCCC
Q 001310 651 TPES 654 (1103)
Q Consensus 651 ~~~~ 654 (1103)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6655
No 456
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.30 E-value=8.3 Score=45.61 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=93.1
Q ss_pred CCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEE
Q 001310 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1103)
Q Consensus 814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1103)
..+++++..+.|.||+........ ...+...+...| .. +...|+.+..|- ..|+ |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788888999999999986432211 011112222222 11 122333333332 1121 33332
Q ss_pred Ec--cCCCEEEEEeCCCeEEEEEcCCC-----ce----e--eeeeeecCCCcccCCCCceEEEEc--CCCCEEEEEeCC-
Q 001310 894 FS--DALNILVSSGGDAQIFVWDVDGW-----GI----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 957 (1103)
Q Consensus 894 ~s--~dg~~l~s~s~dg~I~iwd~~~~-----~~----~--~~~~~~~~~~~~~~~~~v~~l~fs--~dg~~l~~~~d~- 957 (1103)
.. -+...|+.+.+||.|.+|.++.= +. . ..+....+.-+........++++. ...++||+++++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 24467888888888888866320 00 0 000000001111112467889998 888999998554
Q ss_pred eEEEEECCC--ceEEEEeeCCCCcCeEEEEEccCC---C---EEEEEecCCcEEEEeC
Q 001310 958 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 958 ~v~iwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~dg~v~vWd~ 1007 (1103)
.|.||-... .+....-...|...|-+|+|-++. . +|++++-.|.+-+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 455554432 222111111356789999998754 2 6888889999999888
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.19 E-value=0.81 Score=31.66 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.7
Q ss_pred cCceEEEecCCCc--eEEEEEcCCCcEEEEECCCC
Q 001310 335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 367 (1103)
Q Consensus 335 ~~V~~v~~spdg~--~llasgs~d~~v~iwd~~~~ 367 (1103)
+.|.+++|||+.. -||+..-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997543 37888888899999999864
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=5.8 Score=49.22 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=97.4
Q ss_pred eCCCeEEEEEcCCceeEEEeccCCCCEEEEEE--------ccCCCEEEEEeCCCeEEEEEcCCCceeeee-----eeecC
Q 001310 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCR-----SLQTP 929 (1103)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~~~~ 929 (1103)
+-|+.+.+|+..++.....+.+-+..|..+.. -|.=+++...+.--.|.++-+.-.+..... .+...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998878888877777777654 333355655566666777765543321110 11111
Q ss_pred CCcccCCCCceEEEEcCCCCEEEEEeCCeEEE--EECCCc---e-EE----------------EEeeCCCCcCeEEEEEc
Q 001310 930 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFS 987 (1103)
Q Consensus 930 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~i--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs 987 (1103)
.. +..|.++....+|+.+.+|.||.|+- |...+| + |. ..+...+..+|..++..
T Consensus 176 ~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 11 13588999899999999998885543 222221 1 10 11122457799999998
Q ss_pred cCCCEEEEEecCCcEEEEeCCC-ceeEEeec
Q 001310 988 CDCRMVFTSFVDGTLSIHEASN-LEVQCRIL 1017 (1103)
Q Consensus 988 ~dg~~l~t~~~dg~v~vWd~~~-~~~~~~~~ 1017 (1103)
..-..|.+-+..|+|++||+.+ |.-..++.
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~ 282 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGGNGLGGPRFV 282 (1311)
T ss_pred cccceeeeeccCceEEEEEccCCCccceeee
Confidence 8888899999999999999987 54443433
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=26 Score=36.07 Aligned_cols=276 Identities=9% Similarity=0.050 Sum_probs=130.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE
Q 001310 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1103)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1103)
+.+..+.++ +++++.+..+.-++|.|+.+...-..+..-....-..++.. .|++..++..|.-+.+.|+.+.....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 456667775 45778888888899999987654433322111111233443 48899888866668888887653221
Q ss_pred ---eccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccc
Q 001310 659 ---AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1103)
Q Consensus 659 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 735 (1103)
...........++++ |++-..+..|+.+.+-|+.......... ......
T Consensus 163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli~----~~n~g~ 214 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLIG----SYNTGP 214 (370)
T ss_pred eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEEE----EEecCC
Confidence 112222222223333 4455555566777777765322211111 011223
Q ss_pred cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1103)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 815 (1103)
.+.++..+++..+++.... -+.+-|....+ .+.++....- .....++.+.++ ++
T Consensus 215 g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s-----------sp~~~gsyet-----------~~p~~~s~v~Vs--~~ 268 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS-----------SPTVFGSYET-----------SNPVSISTVPVS--GE 268 (370)
T ss_pred ceEEEEecCCeeEEEEccc--ceEEEecCCCC-----------CceEeecccc-----------CCcccccceecc--cc
Confidence 5677777766655444333 23333332221 1122211100 112222223333 33
Q ss_pred EEEEEc-CCeEEEEEcCCce---eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310 816 YLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1103)
Q Consensus 816 ~l~~~~-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1103)
+...+. +.-+.+-|+.... ....+.........+..+ +.++..+..+ +..+-+...-+......+-...+.+
T Consensus 269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s 344 (370)
T COG5276 269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS 344 (370)
T ss_pred eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence 333333 3334444544221 111122122233334333 2244444443 3444454443333333333334445
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcC
Q 001310 892 LVFSDALNILVSSGGDAQIFVWDVD 916 (1103)
Q Consensus 892 l~~s~dg~~l~s~s~dg~I~iwd~~ 916 (1103)
.+.+-+.+.+-+...++.+.||+..
T Consensus 345 ~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 345 CDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cceEEEeeEEEEeecCCCEEEEEec
Confidence 5555566778888889989999853
No 460
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.49 E-value=40 Score=37.70 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=105.8
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
||+.+ ++..+|.|.-.|..++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........
T Consensus 68 dg~v~-~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DGTVY-VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CCeEE-EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 44333 3356676777777776533211111 1112233333344786 77888899999999889999887766551
Q ss_pred -ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---ccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 487 -~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
.+..-.+ .....+..++.++.+...+..+++......... ..+..-....++. ++.+..+ . +..+.-.|.
T Consensus 143 ~~~~~~~v---~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPV---VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNA 216 (370)
T ss_pred eEEecCcE---EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEc
Confidence 1111111 122244444477888888888777766544332 1111111122333 3333221 1 335777788
Q ss_pred CCCeeEEEEecccccC-CceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 563 SEGAIKRTYQGLQLQH-NSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
.+|...-......... ..+........ +..++.++.++.+...|..+++.+-.....
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7887766543222000 00100001011 123456677788889999999998887654
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.38 E-value=30 Score=39.18 Aligned_cols=272 Identities=16% Similarity=0.099 Sum_probs=133.6
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
.|.++.|.-.|. +-.|+.|| +..+|..+|+.+.... .....+|.++..+-.|+ |.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EEEEe
Confidence 789999999997 44566655 6778877777654210 01124566665555554 56677
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCC--CceEEEE
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 492 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~--~~v~~~~ 492 (1103)
.+| |.+.+.++.+.... -..-..+.|..+.-..+|. +-.|+..|-.+. ....+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence 777 78877766321110 0011233455544444444 444555543322 32333222222 2222 2233333
Q ss_pred eeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1103)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1103)
. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 2 3333 456666666665543221111111111111111112222 1111111111 22355556667777766
Q ss_pred EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1103)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 648 (1103)
..... ...|+.+.+.. +..+-.|+...-+..|+..+ +..+...... ...+|..+.-.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 44433 35577777766 44566677665566677666 3333333222 234577777788887 777888775543
No 462
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.38 E-value=44 Score=37.98 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=41.7
Q ss_pred ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC-CceEEEEeeecCCccEEEEEECCCe
Q 001310 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGK 510 (1103)
Q Consensus 440 h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1103)
...+|.++.+...|. +..|+.|| +..+|..+++.++.-.... .+|..+.... . ..+..|+.+|.
T Consensus 163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--q-g~LWVGTdqGv 227 (671)
T COG3292 163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--Q-GRLWVGTDQGV 227 (671)
T ss_pred cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--c-CcEEEEeccce
Confidence 445788999998886 67778777 6778888888776554433 4555554322 2 24666666654
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.34 E-value=1.3 Score=30.73 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.5
Q ss_pred ccEEEEEECCCC---CEEEEEeCCCeEEEEEecCC
Q 001310 397 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG 428 (1103)
Q Consensus 397 ~~V~~~~~spdg---~~las~~~d~~i~iwd~~~~ 428 (1103)
+.|.++.|||+. .+||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 464
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.30 E-value=1.1 Score=30.52 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.1
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCC--CcEEEE
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iw 362 (1103)
+......-...+|||||++++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455778899999999888777776 666665
No 465
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=7.9 Score=42.82 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEe-------eccCCceeeEEEEEC
Q 001310 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC-------YCSCLHVYPHAIAAH 1050 (1103)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~ 1050 (1103)
.-.|..+..|+.|..++-+|.+|.+.++ +. .+|.+..+..++ ...+.|=- .-.+..+.-.-++||
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMe-Lp-----~rwG~~s~~eDg--k~~v~CRt~~i~~~~ftss~~ltl~Qa~WH 174 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVME-LP-----KRWGKNSEFEDG--KSTVNCRTTPVAERFFTSSTSLTLKQAAWH 174 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEE-ch-----hhcCccceecCC--CceEEEEeecccceeeccCCceeeeecccc
Confidence 3456778888999999988889865543 21 112222222211 01122211 111233444567888
Q ss_pred CCC--CcEEEEEecCCcEEEEccCCCCCCCccCCccc
Q 001310 1051 PLK--PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085 (1103)
Q Consensus 1051 p~~--~~~l~~~~~dg~v~vw~~~~~~~~w~~~~~~~ 1085 (1103)
|+. ...|+.-+.|+.|++|++++...-|..++++-
T Consensus 175 P~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepg 211 (741)
T KOG4460|consen 175 PSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPG 211 (741)
T ss_pred CCccCCceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence 874 45677778999999999999988888776653
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.12 E-value=43 Score=37.52 Aligned_cols=149 Identities=8% Similarity=0.030 Sum_probs=86.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee--
Q 001310 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-- 921 (1103)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~-- 921 (1103)
...+..++ ++.+++.+.....++-||- |.. ...-......++++.|.+++.+++++ .+|.+ +|..+.++.-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777776654433333432 221 11112234568899999998887754 66654 4455544311
Q ss_pred -eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEee--CCCCcCeEEEEEccCCCEEEEEec
Q 001310 922 -TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV 998 (1103)
Q Consensus 922 -~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1103)
....+...... ..+.++.|.+++..+++|..|.+.... +.|+.-.... ..-......+.|.++++.+++| .
T Consensus 316 ~~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~ 389 (398)
T PLN00033 316 FDFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N 389 (398)
T ss_pred cceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence 11111111111 148899999999999999998777664 3344322211 1224568899998887777754 6
Q ss_pred CCcEEEE
Q 001310 999 DGTLSIH 1005 (1103)
Q Consensus 999 dg~v~vW 1005 (1103)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 8877655
No 467
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.88 E-value=1.7 Score=46.78 Aligned_cols=157 Identities=10% Similarity=0.086 Sum_probs=99.1
Q ss_pred CCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceee-EEec-CCCC----Cee-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001310 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 872 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 872 (1103)
....+..+-..|||+.+..-+...+.++++.+.... +++. ...+ .|+ ++..-. ++.-|.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456788889999999999988888999988754322 1221 1112 222 222233 67788889999998887 4
Q ss_pred cCCc-e----eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 873 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
...+ . .++.++-...++..+.--.+.+-+++-+..|++.++.....+... .+... ..+..++|||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhh------cCcceeeeCcc
Confidence 4332 1 122222222344444433345667888888988887665533211 11111 14668999999
Q ss_pred CCEEEEEeCCeEEEEECCCc
Q 001310 948 QTRFLLVHETHLAIYEAEEL 967 (1103)
Q Consensus 948 g~~l~~~~d~~v~iwd~~~~ 967 (1103)
+.+|++-..|.++++.+++.
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred cchheeecCCceEEEEecCC
Confidence 99999988889999887754
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=5.7 Score=49.29 Aligned_cols=172 Identities=14% Similarity=0.176 Sum_probs=100.6
Q ss_pred cccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
.+..+|...+..+. |...=..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-+.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 44566776666555 4434455555555443 3334679999999999655432 333334
Q ss_pred cEEEEE--------ECCCCCEEEEEeCCCeEEEEEecCCCccccce------EeccccccEEEEEEecCCCceEEEEEcC
Q 001310 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL------EIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1103)
Q Consensus 398 ~V~~~~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~~------~l~~h~~~v~~~~~s~d~~~~~l~s~~~ 463 (1103)
.|..|. |-|.=++|++...--.|.++-+.-.+...... .+.-....|+|+....+|+ +++ +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 444443 34444566665556667777665433211111 1222345788999888888 455 555
Q ss_pred CCceEEEeC----CCC---c-e----------------eEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1103)
Q Consensus 464 d~~i~iwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1103)
|| .+|.+ ..| + + +..+. .+..+|..+.+.. ....+.+-+..|+|.+|++..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 44443 111 1 1 11223 4667898888843 446888999999999999876
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=13 Score=36.14 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=79.5
Q ss_pred CccEEEEEECCC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1103)
Q Consensus 498 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1103)
++.++.+.+.-| .|++||+.+++...........+..=-...-|.++..-.- .++.-..+|..+-+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 456677766544 5999999988877654443212211111122333332221 25556778888777666554322
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC---CCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL---PENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
.-..++ .|+..++.+....+++.-|.++.....++...... ...+.+.|- ||...|-.-.+..|...+..
T Consensus 132 ----eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 132 ----EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ----cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 223333 45666777777778888887776554444322111 123334443 46555555555555555555
Q ss_pred CCCee
Q 001310 653 ESNSV 657 (1103)
Q Consensus 653 ~~~~~ 657 (1103)
+++.+
T Consensus 205 sGrV~ 209 (262)
T COG3823 205 SGRVV 209 (262)
T ss_pred CCcEE
Confidence 55444
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.44 E-value=42 Score=36.63 Aligned_cols=71 Identities=8% Similarity=-0.060 Sum_probs=35.7
Q ss_pred CccEEEEEECC-----CeEEEEEcCCCCeeEEecCCC-ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
++.+.+.|+.. ..+..||+.+.+-...-.... ......+...+++..+.++.+......+.+||+.+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 346777776544322111111 122223334566677776653322233678898876543
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.38 E-value=38 Score=36.97 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=85.9
Q ss_pred CCCCeeEEEEec-CCCEEEEEcCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeeEEEEcCCCC
Q 001310 801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 856 (1103)
Q Consensus 801 ~~~~v~~l~~s~-d~~~l~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 856 (1103)
.-+..+.+.+.+ ++.+++...+|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 456778899995 566666655565 55555432 1 111 11222221 344788866 78
Q ss_pred CEEEEEeCC------CeEEEEEcCCceeEEEec---------------cCCCCEEEEEEccCCCEEEEEeC-----CC--
Q 001310 857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 908 (1103)
Q Consensus 857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~l~s~s~-----dg-- 908 (1103)
.++++.-.+ ..|+.++.. |+....+. ..+...-+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877666 788888866 65544331 13456889999999996666543 22
Q ss_pred e-------EEEEEcC--C-CceeeeeeeecCCC-cccCCCCceEEEEcCCCCEEEE
Q 001310 909 Q-------IFVWDVD--G-WGIQTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFLL 953 (1103)
Q Consensus 909 ~-------I~iwd~~--~-~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~dg~~l~~ 953 (1103)
. ++++..+ + ++.......+...- .......++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4555444 3 22222222222210 0001236899999999998887
No 472
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.36 E-value=48 Score=37.15 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.2
Q ss_pred EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1103)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 643 (1103)
+.+||..+.+-...-..+.. .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322221111 11223344456677777653
No 473
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=4.9 Score=48.75 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=88.8
Q ss_pred cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-----EEeecC------CCceEEEEeeecCCccEEEEEECCCeE
Q 001310 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKI 511 (1103)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg~i 511 (1103)
+|..+...+|+....++..+.+-.|..||+.+-..- ..+..| .....++.|.|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677777877545666666668899998643211 111111 22234455555432 235566778888
Q ss_pred EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc-cCCceEEEEEcCCC
Q 001310 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAK 590 (1103)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 590 (1103)
++..+........--.-....++++|+|.|+.++.+-. .+++.-|.. +++....+.+... ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88765543333332233457899999999999999865 445665653 3444444444332 23679999998777
Q ss_pred CEEEE
Q 001310 591 DQILA 595 (1103)
Q Consensus 591 ~~l~~ 595 (1103)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
No 474
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.64 E-value=35 Score=34.82 Aligned_cols=234 Identities=11% Similarity=0.041 Sum_probs=134.3
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1103)
..-..++-+|||..-.++...+.|---|..+|+.... --+....-..+..-|||. .-++-+.. -|.-.|.++.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc
Confidence 3455688899998888888788787788888864331 123333445667778887 33433322 45555655554
Q ss_pred eeE-Ee--ecCCCceEEEEeeecCCccEEEEEECC---------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310 477 RTY-SF--EGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 477 ~~~-~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1103)
... .+ +..........| ++.|.+-+++... +.|++|+.. .+..-..|+..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vf--D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVF--DPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceee--CCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence 321 22 112334455555 4456666665421 223344322 23356778999999987
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCC
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1103)
++.-. .+.|-..|..++.. ..+..........+.+.-+|.+..-++....+.+..+|..... -......+....
T Consensus 204 yasla----gnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ar 277 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKAR 277 (353)
T ss_pred EEecc----ccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCC
Confidence 77543 33477777776632 2333222112345556667778777887778888888877654 444455544455
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 625 v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
-.++.....++.-.+-...|.|.-+|-.+.
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCcccc
Confidence 566666666655554444555555555443
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.58 E-value=3.1 Score=42.14 Aligned_cols=77 Identities=9% Similarity=0.102 Sum_probs=53.9
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCceeeee-e-eecCCCcc----cCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001310 894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1103)
Q Consensus 894 ~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~-~-~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~ 967 (1103)
+..++++|+..+.+|.+++||+.+++..... . ........ .....|..+.++.+|.-|++-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997754322 1 11111100 1224688999999999888878888999997755
Q ss_pred eEE
Q 001310 968 TCL 970 (1103)
Q Consensus 968 ~~~ 970 (1103)
.-+
T Consensus 98 ~W~ 100 (219)
T PF07569_consen 98 CWI 100 (219)
T ss_pred eeE
Confidence 443
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.27 E-value=49 Score=36.10 Aligned_cols=164 Identities=12% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--eeE-----EEeccCCC--------CEEEEEEccCCC
Q 001310 843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN 899 (1103)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~dg~ 899 (1103)
-+.+..+++.++++ .+++.+.+|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678888886344 4455566666 55555543 1 111 11111111 344788888888
Q ss_pred EEEEEeCC------CeEEEEEcCCCceeeeeeeecCC-------CcccCCCCceEEEEcCCCCEEEEE------eCC---
Q 001310 900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--- 957 (1103)
Q Consensus 900 ~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~fs~dg~~l~~~------~d~--- 957 (1103)
++++.-.+ ..|..++.+ |.......+...- ..........+++++|||+.|.++ .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888877 5543322111110 112223578999999999955442 232
Q ss_pred --------eEEEEECCC-ceEEEEe---eCC-----CCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCC
Q 001310 958 --------HLAIYEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1103)
Q Consensus 958 --------~v~iwd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~ 1008 (1103)
.|..||..+ ++....+ ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 244455554 3222221 111 357889999999999776321 23455555554
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.99 E-value=66 Score=37.29 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=75.9
Q ss_pred EEEEE---cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCcc--
Q 001310 457 SVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-- 531 (1103)
Q Consensus 457 ~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 531 (1103)
++++. ...+...+.| ..|.....+......... +...++|.+++..+ +.+..+|+.. +...........
T Consensus 117 ~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYD 190 (477)
T ss_dssp EEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred EEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccc
Confidence 55555 3344566666 555555444322111111 33355776666554 7777777753 333333333321
Q ss_pred -EEEEEEccCCCEEEEEec---------CCCCceeEEEEeCCCCeeEEEEecccc------------------------c
Q 001310 532 -CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL------------------------Q 577 (1103)
Q Consensus 532 -i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------~ 577 (1103)
=..+...|+|++|+.+.. .....-.|..+| .+|+.+..+..... .
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 234677899999988772 111122366677 77777766432110 0
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEEcCCC
Q 001310 578 HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~ 620 (1103)
--.++++.+.+....|+..+. -..|...|..+++....+..+.
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 124788999885555555554 4588899988998888886653
No 478
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.39 E-value=27 Score=38.69 Aligned_cols=150 Identities=9% Similarity=0.096 Sum_probs=89.3
Q ss_pred EEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC------CccEEEEEECCCeEEEEEcCCCC
Q 001310 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG 520 (1103)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~ 520 (1103)
+-...+...+++..|+....++--|++.|+.+..+..|...| +.+.|.. +.+.|+..| +..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence 333444455566777778889999999999999998887664 3333321 223444444 4444444554433
Q ss_pred eeEEecCCC-----ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310 521 ARVDYDAPG-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1103)
Q Consensus 521 ~~~~~~~~~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1103)
......... ....+..- ...-++++++..++ |++||.-..+....+.+.. ..|..+..+.+|.++++
T Consensus 549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila 620 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA 620 (776)
T ss_pred Cceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence 222111111 12222222 23457888876444 9999965555445555555 78899999999999988
Q ss_pred EeCCCcEEEEECC
Q 001310 596 AGDDHVIKIWDMN 608 (1103)
Q Consensus 596 ~~~dg~i~iwd~~ 608 (1103)
.+. ..+.+-|+.
T Consensus 621 TCk-~yllL~d~~ 632 (776)
T COG5167 621 TCK-NYLLLTDVP 632 (776)
T ss_pred eec-ceEEEEecc
Confidence 775 455555543
No 479
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.23 E-value=3.7 Score=39.92 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.7
Q ss_pred ccEEEEEECCCC------CEEEEEeCCCeEEEEEecC
Q 001310 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 427 (1103)
Q Consensus 397 ~~V~~~~~spdg------~~las~~~d~~i~iwd~~~ 427 (1103)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999953 4788889999999998764
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.16 E-value=5 Score=40.61 Aligned_cols=74 Identities=9% Similarity=-0.045 Sum_probs=55.6
Q ss_pred EEEcCCCCEEEE-EeCCeEEEEECCCceEEEEe------eC-------CCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 942 l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
+.+...+.+|++ ..+|.+++||+.+++.+... +. .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 335566777766 79999999999998876542 21 2467889999999998888765 588999998
Q ss_pred CCceeEEee
Q 001310 1008 SNLEVQCRI 1016 (1103)
Q Consensus 1008 ~~~~~~~~~ 1016 (1103)
+=+..+...
T Consensus 95 ~L~~W~~vs 103 (219)
T PF07569_consen 95 DLGCWIRVS 103 (219)
T ss_pred ccceeEEec
Confidence 876665433
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.13 E-value=23 Score=40.11 Aligned_cols=112 Identities=11% Similarity=0.058 Sum_probs=62.1
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC------CEEEEE--e-
Q 001310 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H- 955 (1103)
Q Consensus 885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg------~~l~~~--~- 955 (1103)
.-...+.|+|.|||++|++--..|.|++++..++.......+..... ....+....|+|+|+- .+|.++ .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 34557889999999888775556999999876544222111111100 0012468899999884 344442 1
Q ss_pred --------CCeEEEEECCCc-------eEEEEee---CCCCcCeEEEEEccCCCEEEEEecC
Q 001310 956 --------ETHLAIYEAEEL-------TCLKQWF---PISSVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 956 --------d~~v~iwd~~~~-------~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
...|.-|.+... +.+..-. ..| .-..|.|.|||.++++.++.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H--~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH--NGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCc--CCceEEECCCCcEEEEECCC
Confidence 234555554321 1111111 113 23467899999877766544
No 482
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=85.99 E-value=1.1e+02 Score=38.70 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=17.9
Q ss_pred ccccEEEEEEecCCcEEEEeecCc
Q 001310 733 KANKISRLTYNNGGQAIFALASNG 756 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg 756 (1103)
+-..+.+++++|||..+++-..+-
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCch
Confidence 556788999999999776655443
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.93 E-value=11 Score=47.53 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=44.3
Q ss_pred CceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCcee
Q 001310 938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1103)
Q Consensus 938 ~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~ 1012 (1103)
++.+..+......+.....+.+-+|+.........+...+. ..+.++..++++-.||.+.+||...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCCce
Confidence 34444455555555555556666666554433333222221 1289999999999999999999999866
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.82 E-value=60 Score=35.69 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=101.0
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee--ecCCccE--EEEEE-CC---CeEEEEEcCCCCeeE-EecC
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA 527 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~--l~s~~-~d---g~i~iwd~~~~~~~~-~~~~ 527 (1103)
+++....++-+.+||+ .|+.++.+. .+.++.+.+. ..-++.. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777777888999995 566666664 2344444321 1112222 34443 22 579999887533222 2221
Q ss_pred -------CCccEEEEEEc--c-CCCEEEEEecCCCCceeEEEEeC---CCC----eeEEEEecccccCCceEEEEEcCCC
Q 001310 528 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1103)
Q Consensus 528 -------~~~~i~~~~~s--~-dg~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1103)
....+..+|+- + +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 11246677763 3 4555444432 1 334554443 344 457777653 478889999888
Q ss_pred CEEEEEeCCCcEEEEECCC-----CeeEEEEcCCCCCCCCceEEEec--CCC-EEEEEE-CCCeEEEEEcCCC
Q 001310 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--NGT-LLAVIA-NENRIKILETPES 654 (1103)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~g~-~l~~~~-~dg~i~iw~~~~~ 654 (1103)
.+|+.+-++.-|.-|+.+. ++.+.......-...+-.+++-. +++ +|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 22333333322234566677643 332 444444 4778999998754
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.39 E-value=63 Score=35.54 Aligned_cols=191 Identities=15% Similarity=0.195 Sum_probs=106.0
Q ss_pred cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE----ecCCCE--E
Q 001310 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL----SKNDAY--L 817 (1103)
Q Consensus 744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----s~d~~~--l 817 (1103)
|....++.+...+-+.+||+..... .... ...+..+.+ .-+|+. |
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~l-----------------------q~~~------~Gr~NNVDvrygf~l~g~~vDl 116 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKEL-----------------------QSLP------VGRPNNVDVRYGFPLNGKTVDL 116 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EE-----------------------EEE-------SS-EEEEEEEEEEEETTEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEE-----------------------Eeec------CCCcceeeeecceecCCceEEE
Confidence 4566788888888999999765432 1110 111222211 123443 4
Q ss_pred EEEc---C--CeEEEEEcC--CceeeEEecC-------CCCCeeEEEE--cCCCCC-EEEEEeCCCeEEEEEcC---Cc-
Q 001310 818 FSAS---G--GVISLYIVM--TFKTILTIMP-------PSPTATSLAF--NPHDNN-VIAIGMDDSTILIYNAR---SS- 876 (1103)
Q Consensus 818 ~~~~---d--g~i~iwd~~--~~~~~~~~~~-------~~~~i~~l~~--s~~d~~-~lasg~~dg~v~iwd~~---~~- 876 (1103)
++++ + .+|++|.+. ++. +..+.. ....+..+|+ ++.++. ++++...+|.+..|.+. .+
T Consensus 117 avas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~ 195 (381)
T PF02333_consen 117 AVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK 195 (381)
T ss_dssp EEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred EEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence 4554 2 469999775 343 333321 1134556665 443444 66667888988888775 23
Q ss_pred ---eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc--CCC-CE
Q 001310 877 ---EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--KDQ-TR 950 (1103)
Q Consensus 877 ---~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs--~dg-~~ 950 (1103)
+.+++|.. ...+..|+......+|..+-++.-|.-|+.+.........+....+. .....|..+++- ++| .|
T Consensus 196 v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-~l~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 196 VSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-GLVADVEGLALYYGSDGKGY 273 (381)
T ss_dssp EEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-SB-S-EEEEEEEE-CCC-EE
T ss_pred EeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc-ccccCccceEEEecCCCCeE
Confidence 45677764 34788899988888999999887777777764332222333222221 112367777774 344 46
Q ss_pred EEEE--eCCeEEEEECCC
Q 001310 951 FLLV--HETHLAIYEAEE 966 (1103)
Q Consensus 951 l~~~--~d~~v~iwd~~~ 966 (1103)
|+++ .+++..||+...
T Consensus 274 LivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEGGGTEEEEEESST
T ss_pred EEEEcCCCCeEEEEecCC
Confidence 6665 678899999874
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.37 E-value=17 Score=37.15 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=83.5
Q ss_pred EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeeEEEEecccccCCceEEEEEcC
Q 001310 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 588 (1103)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1103)
.+||+.+.+.+.........+.+-++-+||+.+.+++. .++...+++++..+ ..........-.....=-....-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888876654433333445556678899999988875 34667788888654 111111111000112333344568
Q ss_pred CCCEEEEEeCCC-cEEEEECCC-Ce-eEE--EEcC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec
Q 001310 589 AKDQILAAGDDH-VIKIWDMNK-VQ-LLT--TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1103)
Q Consensus 589 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1103)
||+.++.|+... +..+|.... .. ... .+.. .....--..+...|+|++++.+..+. .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999987664 445555422 11 111 1110 11112234677889999999888754 56688877665555
Q ss_pred cc
Q 001310 661 GV 662 (1103)
Q Consensus 661 ~~ 662 (1103)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 487
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.68 E-value=77 Score=36.77 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
..+...++|.. |..+..+.........+.+-++|.+++..+ ..++..|+.. +......+ ..+... ---.+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l--~~~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDL--PGGYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE----TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeec--CCcccc---cccccE
Confidence 44566666644 555555443222111166678998887655 7788888875 33332222 221100 012577
Q ss_pred EcCCCCEEEEEe--------------CCeEEEEECCCceEEEEeeCC-C-------------------------CcCeEE
Q 001310 944 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 983 (1103)
Q Consensus 944 fs~dg~~l~~~~--------------d~~v~iwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 983 (1103)
+-|+|++|+.+. +..|..+| .+|+.+..|... | -.-+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999998754 34577788 888887765211 1 134678
Q ss_pred EEEcc-CCCEEEEEecCCcEEEEeCCCceeEEeecccc
Q 001310 984 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus 984 l~fs~-dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
+.+.+ |+..|+++=.-..|...|..++++...+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 89888 55555554444588889989999887777544
No 488
>PRK13614 lipoprotein LpqB; Provisional
Probab=84.67 E-value=91 Score=36.72 Aligned_cols=157 Identities=13% Similarity=0.056 Sum_probs=86.0
Q ss_pred CeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC--eEEEEEcC-Ccee--
Q 001310 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV-- 878 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~-- 878 (1103)
.+.+++.+++++.+|...+..-.+|-...+...+.+. ....++.-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 6778899999999988874333444333333333222 133466777877 55 444444333 44444322 1111
Q ss_pred ----EEEeccCCC-CEEEEEEccCCCEEEEE-eCCCe--EEEEEcC---CCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 879 ----ISKLEGHSK-RVTGLVFSDALNILVSS-GGDAQ--IFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 879 ----~~~l~~h~~-~V~~l~~s~dg~~l~s~-s~dg~--I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
........+ .|..+..|+||-.++.. ..+|. |.|=-+. .|... .+..+... .....+.+++|..+
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~---~L~~~~~~-~~~~~~~sl~W~~~ 496 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPR---ELTAPITL-AADSDADTGAWVGD 496 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeE---EccCceec-ccCCCcceeEEcCC
Confidence 111223344 49999999999877654 34554 6654433 33311 11111110 00136899999999
Q ss_pred CCEEEEE----eCCeEEEEECCCc
Q 001310 948 QTRFLLV----HETHLAIYEAEEL 967 (1103)
Q Consensus 948 g~~l~~~----~d~~v~iwd~~~~ 967 (1103)
+.+++.+ .+..+++..+..|
T Consensus 497 ~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 497 STVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CEEEEEeccCCCcceEEEEEeCCC
Confidence 9988874 2245677777544
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.36 E-value=0.16 Score=54.84 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=95.7
Q ss_pred EEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEE
Q 001310 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 818 (1103)
Q Consensus 739 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 818 (1103)
...|-+.+..++.++.+..+..||-.. +..... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceeccc-----CCchhHhhhhhccccchhh
Confidence 455667777788888887777776221 111111 1334455677777777776
Q ss_pred EEc--CCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEc
Q 001310 819 SAS--GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1103)
Q Consensus 819 ~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1103)
... .+.+.+||+.+.... ++. +....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|...++++++.
T Consensus 91 vlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 665 588999999854322 222 1111112278999 89999999999999999988877666665599999999999
Q ss_pred cCCCEEEEEeCCCeEEE
Q 001310 896 DALNILVSSGGDAQIFV 912 (1103)
Q Consensus 896 ~dg~~l~s~s~dg~I~i 912 (1103)
+.+ +.+.++.|..+.+
T Consensus 169 lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSV 184 (615)
T ss_pred ccc-eeeecCcHHHHHH
Confidence 876 5555666655443
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.26 E-value=81 Score=35.85 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.2
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
+...-+..+.|+|.|||+ +|++--..|.|++++..++.......+ .........+....|+|+||-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 344445889999999997 666654469999998665542211011 100011136778899999874
No 491
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.11 E-value=1e+02 Score=36.76 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=101.8
Q ss_pred CeeEEEEecCCCEEEEEcC-C-eEEEEEcCCcee----eEEecCCCCCeeEEEEcCCCCCEEEEEeC--CC--eEEEEEc
Q 001310 804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 873 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~ 873 (1103)
.+.+++.++++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 6778999999999888763 3 466655433322 11111 133466677777 45 3333322 22 2555543
Q ss_pred CCceeEEEec--cCCC-CEEEEEEccCCCEEEEEeC---CCeEEEEEcC---CCceeeeeeeecCCCcccCCCCceEEEE
Q 001310 874 RSSEVISKLE--GHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQF 944 (1103)
Q Consensus 874 ~~~~~~~~l~--~h~~-~V~~l~~s~dg~~l~s~s~---dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~f 944 (1103)
+|+... +. ...+ .|..+..|+||-.+|.... .+.|.|=-+. .|............+. ..+.+++|
T Consensus 441 -~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W 514 (599)
T PRK13613 441 -DGEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSW 514 (599)
T ss_pred -CCcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEE
Confidence 444321 21 2333 7999999999988776543 3555554443 2331111122222221 24889999
Q ss_pred cCCCCEEEEE--e--CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEecCCcE
Q 001310 945 HKDQTRFLLV--H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1103)
Q Consensus 945 s~dg~~l~~~--~--d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v 1002 (1103)
..++.+++.+ . +..++...++....... ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9999988864 2 23455555553322211 122344566677776666 44542455554
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.10 E-value=24 Score=44.68 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=27.5
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCC
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~ 368 (1103)
.....++|+|..+ ++|.|+..|.|.++-...-+
T Consensus 36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccc-eEEEEEecccEEEecccceE
Confidence 4677899999998 89999999999999865433
No 493
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.58 E-value=4.4 Score=47.81 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=77.9
Q ss_pred CceEEEecCC-CceEEEEEcCCCcEEEEECCCCCe-eeee--eee-EeeccccccceeeeeccCCCccEEEEEEC--CCC
Q 001310 336 SPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQK-LFIR--NFK-VWDIGACSMLFKTALVRDPGVSVNRVVWS--PDG 408 (1103)
Q Consensus 336 ~V~~v~~spd-g~~llasgs~d~~v~iwd~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~s--pdg 408 (1103)
.|+.|...-= ++.+|+.+..||.|.+|.+++=.. +... ..+ .... ....++ ....-...++.++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r-~~i~P~---f~~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSR-LKIKPF---FHLRVGASAWGLDIHDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhcccccccccc-ccCCCC---eEeecCCceeEEEEEecCcc
Confidence 3555544331 224788899999999998732100 0000 000 0000 000111 111234589999999 889
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCC--c--eEEEEEcCCCceEEEeC
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--Q--ISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~--~--~~l~s~~~d~~i~iwd~ 472 (1103)
++||+++....|.||-......-.....-..|...|.+|+|.++.. . ..+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999999988888887765311111101113667899999987651 1 36888999999998886
No 494
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.53 E-value=29 Score=38.51 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=87.9
Q ss_pred cCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC-------CCCEEEEEeCCCeEEEEEcC-CceeEEE
Q 001310 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNAR-SSEVISK 881 (1103)
Q Consensus 812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~-~~~~~~~ 881 (1103)
.|..+|...+ ...+.-.|++.|+.+.+...+... -+.|.|. +.+.|+ |-.+..|.-.|.+ .|..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3445555444 366888899999999988876655 4666662 233444 4445555555544 2322222
Q ss_pred eccCCCCEEEEEEcc----CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC
Q 001310 882 LEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1103)
Q Consensus 882 l~~h~~~V~~l~~s~----dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~ 957 (1103)
.. ....++.-.||. ...++|.+|.-|-|++||--.-...+ .++.+ +..|..+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP~l------G~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALPGL------GDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCccc------ccceeeeEeecCCcEEEEeecc
Confidence 21 112222223332 34699999999999999976522111 12222 2368899999999999998888
Q ss_pred eEEEEECC
Q 001310 958 HLAIYEAE 965 (1103)
Q Consensus 958 ~v~iwd~~ 965 (1103)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 89888875
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.04 E-value=7.2 Score=37.88 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.5
Q ss_pred CCEEEEEEccCC------CEEEEEeCCCeEEEEEcCC
Q 001310 887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 887 ~~V~~l~~s~dg------~~l~s~s~dg~I~iwd~~~ 917 (1103)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999955 5789999999999998775
No 496
>PRK13615 lipoprotein LpqB; Provisional
Probab=82.77 E-value=1.1e+02 Score=36.04 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC-Cceeeee
Q 001310 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR 924 (1103)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~-~~~~~~~ 924 (1103)
..+++.++ ++..+|....++.++++... +.....+.+ ...+.-.|.++| ++-+.......++..... |+... .
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-V 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-e
Confidence 37889999 88888888778888887665 222222332 235666788877 555554444455554433 33211 1
Q ss_pred eeecCCCcccCCCCceEEEEcCCCCEEEEEe----CCeEEEEECC--Cc--eEE----EEeeCCCCcCeEEEEEccCCCE
Q 001310 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE--EL--TCL----KQWFPISSVPISQATFSCDCRM 992 (1103)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~v~iwd~~--~~--~~~----~~~~~~h~~~v~~l~fs~dg~~ 992 (1103)
..... ..+.|..+..|+||..+|+-. .++|++--+. .+ ..+ ..+..+ ...+.++.|..++..
T Consensus 410 ~v~~~-----~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l 483 (557)
T PRK13615 410 AVSWT-----ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV 483 (557)
T ss_pred ecccc-----CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence 11111 124799999999999998732 3566664332 23 122 111122 348899999999987
Q ss_pred EEEEe---cCCcEEEEeCC
Q 001310 993 VFTSF---VDGTLSIHEAS 1008 (1103)
Q Consensus 993 l~t~~---~dg~v~vWd~~ 1008 (1103)
++.+. .+..+++-.+.
T Consensus 484 aVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 484 ATLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEEeccCCCCceEEEEECC
Confidence 66552 23455555555
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.86 E-value=40 Score=30.55 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCC------ceeeeeeeecCCCcccCCCCceEEEEcC-----CCCEEEEEeCC
Q 001310 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGW------GIQTCRSLQTPDGVMTLAPSETHIQFHK-----DQTRFLLVHET 957 (1103)
Q Consensus 889 V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~l~fs~-----dg~~l~~~~d~ 957 (1103)
|..-.|......|+.++.-|.|.|.+.... .......+...+ .|++++-.+ +...|++|...
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-------~italaaG~l~~~~~~D~LliGt~t 73 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-------EITALAAGRLKPDDGRDCLLIGTQT 73 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-------ceEEEEEEecCCCCCcCEEEEeccc
Q ss_pred eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCE---EEEEecCCcEEEEeCCCceeEEeec
Q 001310 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM---VFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 958 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~---l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.+..||+.....+. ...-...|.++.+-.-+.. |+..+.+..|.-||.+..+...+..
T Consensus 74 ~llaYDV~~N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 74 SLLAYDVENNSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred eEEEEEcccCchhh--hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
No 498
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.65 E-value=81 Score=33.95 Aligned_cols=238 Identities=15% Similarity=0.017 Sum_probs=115.4
Q ss_pred CCCceEEEEEcCCCcEEEEECCC--CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC-CCeE
Q 001310 344 PVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIV 420 (1103)
Q Consensus 344 pdg~~llasgs~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d~~i 420 (1103)
-+++ .|+.|+.+|...+ ++.. ++..+ -.+...|+++...+.-+.|++-++ ...+
T Consensus 11 ~~~~-~lL~GTe~Gly~~-~~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 11 CDGK-WLLVGTEEGLYVL-NISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQL 67 (302)
T ss_pred cCCc-EEEEEeCCceEEE-EcccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence 3444 5888888775444 4543 22221 125678999999998877776643 3459
Q ss_pred EEEEecCCCc-----------ccc-ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc----eeEEe---
Q 001310 421 QLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSF--- 481 (1103)
Q Consensus 421 ~iwd~~~~~~-----------~~~-~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~--- 481 (1103)
+++++..-.. .+. ....-+|......++.. .++...++++....+|.++.+.... ....+
T Consensus 68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~ 146 (302)
T smart00036 68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLF 146 (302)
T ss_pred EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccc
Confidence 9999843221 000 00122444444444444 3333344555556677776443221 11110
Q ss_pred e-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC--CC--e---eEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 482 E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LG--A---RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 482 ~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~--~---~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
. ....++..+..........++.|+..+-..++++.. .. . ............++..-+++.+|++-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~------ 220 (302)
T smart00036 147 PLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY------ 220 (302)
T ss_pred cCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE------
Confidence 0 112233333333333345666776643333444432 10 0 00011111023333334455555554
Q ss_pred ceeEEEEeCCCCeeEE--EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
+......|....+..+ .+.- . ....++++. ..++++-+. ..|.|+++.+++.++++..
T Consensus 221 ~~~~v~Vn~~G~~~~r~~~l~w-~---~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 221 DEFGVFVNLYGKRRSRNPILHW-E---FMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcEEEEEeCCCCccccceEEEc-C---CcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 2224444443212211 1211 1 344566665 367776654 5599999999999888864
No 499
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.14 E-value=1.9e+02 Score=37.94 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=75.5
Q ss_pred EcCCeEEEEEcCCcee-------eEEe---------cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC----CceeE
Q 001310 820 ASGGVISLYIVMTFKT-------ILTI---------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR----SSEVI 879 (1103)
Q Consensus 820 ~~dg~i~iwd~~~~~~-------~~~~---------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~----~~~~~ 879 (1103)
-.+|.|.-||-.+..- +..+ .-..+.|..+.+++ ...-++-|.. ..+-+=-.. -|..+
T Consensus 620 L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~-~~~~~~~g~~-~~~a~~~~r~~~e~G~~l 697 (1774)
T PF11725_consen 620 LQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ-EHPSIAHGDN-NVFALPQRRNKVELGDAL 697 (1774)
T ss_pred eccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeeccc-CCCccccCCC-cccccccccCCCCCCccc
Confidence 3479999999764211 1111 11345667777776 4334443332 112111111 12333
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeE
Q 001310 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 959 (1103)
Q Consensus 880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v 959 (1103)
.-+. ...|+++|.-.+ +.+++.+..|.+.... ..+. .+..... ...+.|..++.....++.|...+|.+
T Consensus 698 ~Gl~--~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~--gl~G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 698 EGLE--DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRP--GLSGEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred cCCC--cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCC--CCCcchhheeeccccceeEecCCCce
Confidence 3333 456888888754 6667788899999888 6555 2222211 12358999999999999998888887
Q ss_pred EEEE
Q 001310 960 AIYE 963 (1103)
Q Consensus 960 ~iwd 963 (1103)
+--+
T Consensus 767 f~~~ 770 (1774)
T PF11725_consen 767 FRLP 770 (1774)
T ss_pred eecC
Confidence 7543
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.03 E-value=98 Score=36.68 Aligned_cols=478 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEE------EEEcCCCCEEEEEe
Q 001310 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSV------VHFDTAKDQILAAG 597 (1103)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~ 597 (1103)
.++...+.+..++|..-+..+...+.-+..+.-|.+.......-...+.... .+... ..|+--....+.-.
T Consensus 11 ~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~---ip~f~dkl~s~~hf~~~~~~~f~~~ 87 (1243)
T COG5290 11 TFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFE---IPFFPDKLLSFKHFHVLTFEYFLID 87 (1243)
T ss_pred cCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEec---cCCcchHhhhhhhhhhhheeeEEec
Q ss_pred CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCc
Q 001310 598 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1103)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 677 (1103)
....|.+-.-.+.....-.....-...|...+||.|.+.+++...+..|.+++..-. .........-+....+.
T Consensus 88 ~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd------~ise~~L~~~dl~ef~k 161 (1243)
T COG5290 88 EGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFD------PISEYHLKKSDLVEFGK 161 (1243)
T ss_pred CCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccc------ccchhhcchhHHHHhcc
Q ss_pred eeeeeccCCceEecCCC------------CCCCccceeeccccccccccccccCCccceeeeccCccccccEEE------
Q 001310 678 VTGAGIANGSVSVNEDP------------KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR------ 739 (1103)
Q Consensus 678 ~~~~~~~~~~~~~~~~~------------s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~------ 739 (1103)
.+.+|++...-.|.+.. --|-.-+........+..|.-+..-..-.+.-..|. ..-.|.+
T Consensus 162 hi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~pr--ra~rvysreg~ld 239 (1243)
T COG5290 162 HIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPR--RAFRVYSREGQLD 239 (1243)
T ss_pred ceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccc--cceeeeccccccc
Q ss_pred ------------EEEecCCcEEEEeecCce-----EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC
Q 001310 740 ------------LTYNNGGQAIFALASNGV-----HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 802 (1103)
Q Consensus 740 ------------~~~s~~g~~l~~~~~dg~-----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1103)
+.|-|+|..+++.+.||. +..+. ..|..--.+++.. +..
T Consensus 240 s~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-----------------------rNGLrHGef~lr~-~~d 295 (1243)
T COG5290 240 SASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-----------------------RNGLRHGEFDLRV-GCD 295 (1243)
T ss_pred cccCCcccchhccccccCCceeeeeccCCCCCcceEEEEc-----------------------cCCcccCCccccC-Cch
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
..+...+|.-....++.+..+.+++|-.....-.....-.-..+.-+.|+|.....|...+...-.++.=-.....-...
T Consensus 296 Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~~~~~s~ 375 (1243)
T COG5290 296 EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKKTHHGSE 375 (1243)
T ss_pred hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhhhcCCcc
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iw 962 (1103)
..... |...+. ||.-.++-.-+-...........-+... -|..++.|-..+..++..+..+..+
T Consensus 376 ~p~d~----------g~~~Vi---DGs~~l~Tplsl~n~PPPm~~~~~~~d~---NV~dv~~s~~~~~~aa~~~drli~f 439 (1243)
T COG5290 376 YPFDN----------GTSYVI---DGSYMLYTPLSLKNLPPPMFSVRVGFDT---NVVDVFPSFAEKKGAALLRDRLIMF 439 (1243)
T ss_pred cCccC----------CceEEE---cCceEEecchhhhcCCCCeEEEEecCCC---ceeeeccchhhhhHhhhccceeEEE
Q ss_pred ECCCceEEEEeeCCC------CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEee
Q 001310 963 EAEELTCLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCY 1036 (1103)
Q Consensus 963 d~~~~~~~~~~~~~h------~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1103)
..++-+.+.....-. .-...++.+-.+|..++....++.-+++=++.+..-.+..
T Consensus 440 ~~~s~e~i~k~~ef~~sef~s~v~f~~~l~l~~~~v~ll~dtnn~s~~~i~~~~d~~e~~k------------------- 500 (1243)
T COG5290 440 RWDSEEFINKRTEFLESEFDSIVLFDGFLVLKSGHVFLLKDTNNESDTYITRNGDVDERKK------------------- 500 (1243)
T ss_pred ecCcHHHHHHhccccHHhhhhhccccceEEecCceEEEEeccCCCcceEEeecCcccchhh-------------------
Q ss_pred ccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1037 CSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1037 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
-....++..++-.+.-+.+++..+..+|.|+-+++
T Consensus 501 ~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~ 535 (1243)
T COG5290 501 RGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNF 535 (1243)
T ss_pred ccceeeeeeehhhHHHHHHHHhhcccceeEEEecc
Done!