Query 001310
Match_columns 1103
No_of_seqs 917 out of 4748
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 21:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 7.2E-69 2.5E-73 648.4 82.5 567 327-1070 9-577 (577)
2 1nr0_A Actin interacting prote 100.0 1E-66 3.6E-71 629.3 75.3 576 332-1008 16-610 (611)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-65 1.9E-69 671.1 64.5 619 326-1073 607-1249(1249)
4 2ymu_A WD-40 repeat protein; u 100.0 3.4E-63 1.2E-67 598.8 74.6 555 297-1006 21-577 (577)
5 1nr0_A Actin interacting prote 100.0 7.4E-64 2.5E-68 604.3 68.7 572 393-1071 15-609 (611)
6 1pgu_A Actin interacting prote 100.0 9.3E-61 3.2E-65 582.9 69.2 558 331-1009 15-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-58 6.6E-63 608.8 69.1 589 391-1076 610-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-57 5.8E-62 567.3 66.3 595 329-1018 12-792 (902)
9 1pgu_A Actin interacting prote 100.0 1.5E-57 5.2E-62 554.6 63.5 554 392-1072 14-613 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 5.4E-56 1.8E-60 553.8 57.8 596 392-1076 13-786 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 8.6E-48 3E-52 484.7 60.9 558 325-1010 4-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-46 1.2E-50 470.2 56.3 479 392-964 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 1.9E-45 6.5E-50 420.3 39.8 288 328-651 102-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 9E-40 3.1E-44 363.6 44.0 296 323-650 44-340 (340)
15 2pbi_B Guanine nucleotide-bind 100.0 1.3E-39 4.3E-44 364.0 44.3 299 323-650 53-354 (354)
16 3ow8_A WD repeat-containing pr 100.0 6.3E-40 2.2E-44 360.6 41.1 295 324-652 22-320 (321)
17 2ynn_A Coatomer subunit beta'; 100.0 2.2E-39 7.4E-44 354.2 40.4 293 325-653 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 9.2E-39 3.2E-43 351.7 40.6 301 325-654 8-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 1.9E-39 6.4E-44 367.0 34.9 306 324-655 56-377 (380)
20 4g56_B MGC81050 protein; prote 100.0 3.8E-39 1.3E-43 360.3 33.4 319 702-1076 20-346 (357)
21 1vyh_C Platelet-activating fac 100.0 1.8E-38 6E-43 362.6 39.2 286 392-715 104-409 (410)
22 1got_B GT-beta; complex (GTP-b 100.0 8.1E-38 2.8E-42 347.8 42.8 286 392-714 51-340 (340)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.1E-38 1.7E-42 350.1 40.7 307 324-658 5-340 (345)
24 3ow8_A WD repeat-containing pr 100.0 4.9E-38 1.7E-42 345.5 38.8 289 392-716 28-320 (321)
25 4ery_A WD repeat-containing pr 100.0 4.3E-37 1.5E-41 338.2 44.1 296 324-652 13-311 (312)
26 4gqb_B Methylosome protein 50; 100.0 4.1E-38 1.4E-42 348.5 35.9 295 733-1073 29-331 (344)
27 4g56_B MGC81050 protein; prote 100.0 4.7E-38 1.6E-42 351.5 34.3 294 331-654 39-344 (357)
28 4gqb_B Methylosome protein 50; 100.0 1.4E-37 4.9E-42 344.1 37.6 298 332-654 28-332 (344)
29 2pbi_B Guanine nucleotide-bind 100.0 1.3E-36 4.4E-41 339.6 41.6 287 392-714 60-354 (354)
30 1r5m_A SIR4-interacting protei 100.0 3.7E-37 1.3E-41 355.7 38.4 334 332-716 43-424 (425)
31 2xzm_R RACK1; ribosome, transl 100.0 9.2E-37 3.1E-41 340.0 38.9 302 324-654 11-341 (343)
32 2hes_X YDR267CP; beta-propelle 100.0 1.6E-36 5.4E-41 335.6 40.2 299 324-653 4-328 (330)
33 1erj_A Transcriptional repress 100.0 2.5E-36 8.4E-41 343.2 41.9 307 327-653 58-389 (393)
34 1k32_A Tricorn protease; prote 100.0 2.1E-35 7.2E-40 378.7 55.7 523 333-1011 13-639 (1045)
35 2ynn_A Coatomer subunit beta'; 100.0 2E-36 6.9E-41 330.6 39.4 268 392-674 9-280 (304)
36 3iz6_a 40S ribosomal protein R 100.0 2.7E-37 9.1E-42 349.3 32.5 291 392-717 62-375 (380)
37 1r5m_A SIR4-interacting protei 100.0 2.7E-36 9.3E-41 348.4 41.5 357 556-1008 26-424 (425)
38 3frx_A Guanine nucleotide-bind 100.0 8.5E-36 2.9E-40 328.0 42.5 297 391-765 12-317 (319)
39 1gxr_A ESG1, transducin-like e 100.0 5.9E-36 2E-40 333.5 41.8 324 333-763 8-335 (337)
40 2pm9_A Protein WEB1, protein t 100.0 2.3E-37 7.8E-42 356.3 30.9 354 334-717 12-414 (416)
41 4aow_A Guanine nucleotide-bind 100.0 8.5E-36 2.9E-40 332.8 42.4 303 325-655 29-339 (340)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-36 1.9E-40 333.6 40.0 302 732-1075 13-337 (345)
43 4ery_A WD repeat-containing pr 100.0 2.2E-35 7.7E-40 324.5 42.4 291 391-716 18-311 (312)
44 2hes_X YDR267CP; beta-propelle 100.0 6.3E-35 2.2E-39 322.8 43.3 306 564-1009 3-328 (330)
45 1k32_A Tricorn protease; prote 100.0 7E-34 2.4E-38 364.6 56.7 529 395-1075 13-639 (1045)
46 1erj_A Transcriptional repress 100.0 4.3E-35 1.5E-39 333.0 39.8 293 394-717 62-389 (393)
47 3vl1_A 26S proteasome regulato 100.0 1.8E-35 6.3E-40 340.8 36.8 346 398-917 58-419 (420)
48 3gre_A Serine/threonine-protei 100.0 8.6E-36 2.9E-40 345.3 33.9 383 341-914 34-437 (437)
49 2pm9_A Protein WEB1, protein t 100.0 1.7E-36 5.7E-41 349.1 26.4 337 579-1010 13-415 (416)
50 3vl1_A 26S proteasome regulato 100.0 9.1E-36 3.1E-40 343.4 32.3 351 335-765 57-419 (420)
51 1gxr_A ESG1, transducin-like e 100.0 2.9E-34 1E-38 319.8 42.9 322 439-916 7-336 (337)
52 3dm0_A Maltose-binding peripla 100.0 6.9E-35 2.4E-39 358.0 40.7 299 326-652 374-692 (694)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.2E-34 1.8E-38 330.8 45.8 328 326-765 110-442 (445)
54 2xzm_R RACK1; ribosome, transl 100.0 3.7E-34 1.3E-38 318.8 40.9 288 391-717 16-340 (343)
55 3v7d_B Cell division control p 100.0 8.1E-34 2.8E-38 331.6 44.9 305 324-673 111-442 (464)
56 3ei3_B DNA damage-binding prot 100.0 1.8E-34 6.1E-39 327.7 37.5 298 324-653 63-382 (383)
57 1sq9_A Antiviral protein SKI8; 100.0 2.5E-34 8.7E-39 328.5 38.6 299 325-654 7-396 (397)
58 2j04_B YDR362CP, TAU91; beta p 100.0 8.4E-36 2.9E-40 346.3 24.5 344 324-717 124-517 (524)
59 3zwl_B Eukaryotic translation 100.0 1.8E-33 6.1E-38 317.9 42.6 292 326-655 24-348 (369)
60 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-33 4.1E-38 311.2 39.3 293 324-658 8-301 (313)
61 2j04_B YDR362CP, TAU91; beta p 100.0 4.2E-35 1.4E-39 340.5 28.3 350 395-875 132-517 (524)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.9E-33 1.3E-37 323.5 44.0 319 392-875 114-442 (445)
63 3v7d_B Cell division control p 100.0 5E-33 1.7E-37 324.9 44.0 346 567-1006 113-460 (464)
64 3i2n_A WD repeat-containing pr 100.0 4.9E-34 1.7E-38 320.9 33.9 301 323-655 7-355 (357)
65 4aow_A Guanine nucleotide-bind 100.0 6.8E-33 2.3E-37 309.2 42.4 299 392-766 34-338 (340)
66 3gre_A Serine/threonine-protei 100.0 1.3E-33 4.4E-38 327.1 37.0 274 322-656 50-362 (437)
67 3k26_A Polycomb protein EED; W 100.0 6.2E-34 2.1E-38 321.3 31.2 295 328-652 12-365 (366)
68 4e54_B DNA damage-binding prot 100.0 3.3E-34 1.1E-38 330.8 28.2 304 325-656 110-433 (435)
69 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-33 2E-37 314.0 36.8 291 330-654 4-362 (372)
70 4e54_B DNA damage-binding prot 100.0 1.9E-33 6.5E-38 324.3 33.0 302 569-1013 113-434 (435)
71 3ei3_B DNA damage-binding prot 100.0 7.2E-33 2.5E-37 314.5 36.7 307 559-1009 57-382 (383)
72 4a11_B DNA excision repair pro 100.0 3.8E-33 1.3E-37 320.1 34.3 347 556-1072 24-404 (408)
73 3zwl_B Eukaryotic translation 100.0 3E-32 1E-36 307.8 40.7 289 390-718 26-347 (369)
74 4h5i_A Guanine nucleotide-exch 100.0 2.3E-33 7.9E-38 314.2 30.7 299 335-654 15-344 (365)
75 4h5i_A Guanine nucleotide-exch 100.0 1.4E-32 4.7E-37 308.0 36.5 203 801-1010 132-344 (365)
76 4aez_A CDC20, WD repeat-contai 100.0 1.9E-32 6.6E-37 312.5 37.4 299 329-660 86-387 (401)
77 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-33 1.2E-37 312.6 30.1 317 331-754 12-350 (588)
78 2pm7_B Protein transport prote 100.0 1.8E-32 6.1E-37 298.2 34.9 254 327-608 2-284 (297)
79 3dwl_C Actin-related protein 2 100.0 5.5E-34 1.9E-38 323.1 23.8 289 330-651 7-377 (377)
80 4gga_A P55CDC, cell division c 100.0 7.7E-32 2.6E-36 309.5 41.1 289 336-661 107-403 (420)
81 3dm0_A Maltose-binding peripla 100.0 1E-31 3.5E-36 329.8 43.6 212 436-656 377-595 (694)
82 1sq9_A Antiviral protein SKI8; 100.0 2.6E-32 8.8E-37 311.9 34.3 306 391-717 11-395 (397)
83 2pm7_B Protein transport prote 100.0 5.2E-32 1.8E-36 294.5 34.2 252 392-653 5-285 (297)
84 4a11_B DNA excision repair pro 100.0 9.6E-32 3.3E-36 308.4 38.0 348 324-716 33-404 (408)
85 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-33 5.9E-38 315.0 20.6 330 528-997 14-349 (588)
86 1k8k_C P40, ARP2/3 complex 41 100.0 7.7E-32 2.6E-36 304.9 34.4 290 392-717 4-361 (372)
87 4ggc_A P55CDC, cell division c 100.0 1.2E-30 4E-35 288.0 42.1 282 337-654 28-316 (318)
88 3k26_A Polycomb protein EED; W 100.0 1E-31 3.5E-36 303.1 31.0 293 391-716 13-365 (366)
89 3odt_A Protein DOA1; ubiquitin 100.0 9.8E-31 3.4E-35 287.8 37.9 281 392-720 14-299 (313)
90 3dw8_B Serine/threonine-protei 100.0 1.9E-31 6.5E-36 310.0 34.0 301 332-652 26-445 (447)
91 3i2n_A WD repeat-containing pr 100.0 2.4E-31 8.2E-36 298.9 33.3 294 390-717 12-353 (357)
92 3bg1_A Protein SEC13 homolog; 100.0 4.6E-32 1.6E-36 297.8 25.4 253 328-608 7-292 (316)
93 4gga_A P55CDC, cell division c 100.0 1.2E-30 4E-35 299.6 37.0 282 398-720 107-398 (420)
94 1p22_A F-BOX/WD-repeat protein 100.0 9.4E-31 3.2E-35 302.1 36.1 280 328-657 127-418 (435)
95 1yfq_A Cell cycle arrest prote 100.0 4.3E-31 1.5E-35 294.9 31.9 287 328-650 5-321 (342)
96 3mmy_A MRNA export factor; mRN 100.0 8.5E-31 2.9E-35 295.8 34.1 294 322-651 27-344 (368)
97 3dwl_C Actin-related protein 2 100.0 2.8E-32 9.5E-37 309.1 20.4 241 394-652 9-280 (377)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-30 4.9E-35 297.4 32.2 297 335-655 35-344 (402)
99 3bg1_A Protein SEC13 homolog; 100.0 2.8E-31 9.7E-36 291.4 24.6 251 391-653 8-293 (316)
100 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-30 5.8E-35 290.9 31.0 306 328-660 5-344 (351)
101 4aez_A CDC20, WD repeat-contai 100.0 6.1E-30 2.1E-34 291.8 34.4 286 392-719 87-382 (401)
102 3dw8_B Serine/threonine-protei 100.0 5.4E-30 1.8E-34 297.8 34.2 254 394-657 26-377 (447)
103 4ggc_A P55CDC, cell division c 100.0 1.6E-29 5.6E-34 278.8 36.3 278 399-717 28-315 (318)
104 3jrp_A Fusion protein of prote 100.0 7.2E-30 2.5E-34 289.5 33.5 256 392-657 7-291 (379)
105 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-29 4.9E-34 292.2 35.6 275 393-719 130-416 (435)
106 3jrp_A Fusion protein of prote 100.0 7.1E-30 2.4E-34 289.5 32.2 259 326-611 3-289 (379)
107 3mmy_A MRNA export factor; mRN 100.0 5.6E-29 1.9E-33 280.8 37.0 290 392-716 35-345 (368)
108 1yfq_A Cell cycle arrest prote 100.0 3.1E-29 1.1E-33 279.8 32.8 285 392-715 7-322 (342)
109 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-29 8.5E-34 281.4 30.8 296 390-718 5-338 (351)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-28 6.7E-33 283.9 36.7 301 335-653 5-391 (450)
111 1l0q_A Surface layer protein; 100.0 2.4E-27 8.4E-32 269.8 43.8 279 348-665 3-287 (391)
112 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-28 3.9E-33 275.3 30.4 284 325-654 10-337 (355)
113 2w18_A PALB2, fancn, partner a 100.0 2E-27 6.8E-32 249.4 36.6 294 443-915 41-355 (356)
114 2w18_A PALB2, fancn, partner a 100.0 5.9E-28 2E-32 253.4 32.5 270 636-1007 56-355 (356)
115 1l0q_A Surface layer protein; 100.0 1.2E-26 4E-31 264.2 44.5 328 457-953 4-364 (391)
116 3jro_A Fusion protein of prote 100.0 3.1E-29 1.1E-33 308.9 24.4 260 327-611 2-287 (753)
117 2aq5_A Coronin-1A; WD40 repeat 100.0 2.5E-28 8.5E-33 278.8 29.9 285 398-717 36-342 (402)
118 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-27 7.7E-32 264.8 35.5 291 559-966 3-336 (355)
119 3jro_A Fusion protein of prote 100.0 1.2E-28 4E-33 303.7 27.1 255 391-655 4-287 (753)
120 3bws_A Protein LP49; two-domai 100.0 1.1E-26 3.8E-31 268.4 41.1 300 397-764 123-431 (433)
121 3bws_A Protein LP49; two-domai 100.0 5.5E-27 1.9E-31 271.0 38.4 295 325-653 114-432 (433)
122 2xyi_A Probable histone-bindin 100.0 1E-27 3.5E-32 275.8 31.5 256 327-610 121-411 (430)
123 2xyi_A Probable histone-bindin 100.0 9.9E-27 3.4E-31 267.5 34.6 256 388-654 120-411 (430)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.7E-27 2.6E-31 270.5 33.7 265 397-675 5-365 (450)
125 1nir_A Nitrite reductase; hemo 100.0 3.3E-26 1.1E-30 268.4 39.1 343 536-974 144-522 (543)
126 3lrv_A PRE-mRNA-splicing facto 100.0 3E-27 1E-31 263.1 28.4 235 749-1011 88-335 (343)
127 3lrv_A PRE-mRNA-splicing facto 100.0 9.1E-28 3.1E-32 267.3 23.0 271 340-652 42-332 (343)
128 1nir_A Nitrite reductase; hemo 100.0 7.7E-26 2.6E-30 265.3 38.4 330 586-1017 145-522 (543)
129 4gq1_A NUP37; propeller, trans 100.0 1.5E-27 5.1E-32 270.4 20.6 276 328-651 83-387 (393)
130 4gq1_A NUP37; propeller, trans 99.9 5.1E-27 1.8E-31 266.0 19.2 322 343-715 27-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.7E-25 1.2E-29 252.0 30.5 307 333-676 61-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-23 6E-28 259.5 36.6 303 334-652 36-412 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-23 4E-28 239.6 30.9 305 441-898 62-409 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-22 4.7E-27 251.5 35.3 331 441-919 36-461 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-23 8.8E-28 257.4 27.2 312 336-678 18-423 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 6.5E-23 2.2E-27 253.7 29.4 386 531-1016 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 2.8E-21 9.5E-26 214.0 36.1 281 340-654 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2E-21 7E-26 239.4 34.6 242 804-1074 122-436 (706)
139 3vgz_A Uncharacterized protein 99.9 7.5E-21 2.6E-25 212.7 34.9 275 334-644 40-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 6E-21 2.1E-25 235.2 37.2 238 399-652 28-341 (706)
141 1ri6_A Putative isomerase YBHE 99.9 2.2E-20 7.6E-25 207.9 36.8 277 346-652 4-307 (343)
142 1pby_B Quinohemoprotein amine 99.9 2.2E-20 7.5E-25 207.4 35.1 292 591-1017 2-318 (337)
143 1ri6_A Putative isomerase YBHE 99.9 3E-20 1E-24 206.8 34.3 282 700-1012 7-313 (343)
144 3u4y_A Uncharacterized protein 99.9 1.2E-19 4E-24 200.9 38.2 290 535-969 3-307 (331)
145 3vgz_A Uncharacterized protein 99.9 1.9E-19 6.5E-24 201.2 39.2 277 579-1000 41-335 (353)
146 1pby_B Quinohemoprotein amine 99.9 3.7E-20 1.3E-24 205.5 30.0 280 349-662 3-319 (337)
147 2ojh_A Uncharacterized protein 99.9 1.2E-20 4.1E-25 205.1 24.6 257 352-644 17-293 (297)
148 1z68_A Fibroblast activation p 99.9 8.5E-21 2.9E-25 234.2 24.2 378 534-1017 20-451 (719)
149 3hfq_A Uncharacterized protein 99.9 4.4E-19 1.5E-23 197.7 32.7 278 706-1013 14-323 (347)
150 3o4h_A Acylamino-acid-releasin 99.8 4.7E-20 1.6E-24 221.2 25.2 272 334-652 21-314 (582)
151 3hfq_A Uncharacterized protein 99.8 1.4E-18 4.7E-23 193.6 35.4 249 801-1077 38-321 (347)
152 2ojh_A Uncharacterized protein 99.8 1.9E-19 6.5E-24 195.5 26.3 244 325-600 32-293 (297)
153 1z68_A Fibroblast activation p 99.8 4.6E-20 1.6E-24 227.7 22.5 279 338-653 19-391 (719)
154 3pe7_A Oligogalacturonate lyas 99.8 4E-19 1.4E-23 201.5 28.2 309 318-652 14-381 (388)
155 3scy_A Hypothetical bacterial 99.8 1.6E-17 5.4E-22 186.1 40.2 310 539-987 11-360 (361)
156 3scy_A Hypothetical bacterial 99.8 1.4E-17 4.8E-22 186.5 37.7 300 343-673 10-360 (361)
157 1jmx_B Amine dehydrogenase; ox 99.8 4.6E-18 1.6E-22 189.6 33.4 299 584-1017 5-333 (349)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.2E-18 4E-23 214.7 31.0 279 335-655 17-355 (740)
159 3o4h_A Acylamino-acid-releasin 99.8 5.4E-19 1.9E-23 211.9 27.2 236 396-651 21-274 (582)
160 4a5s_A Dipeptidyl peptidase 4 99.8 1.2E-17 4E-22 205.8 38.0 364 580-1017 18-457 (740)
161 1jmx_B Amine dehydrogenase; ox 99.8 4.5E-18 1.5E-22 189.7 30.4 283 338-661 3-333 (349)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 1.5E-18 5E-23 197.9 25.9 221 334-565 36-279 (434)
163 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-18 4.5E-23 198.2 22.8 199 802-1010 36-279 (434)
164 3pe7_A Oligogalacturonate lyas 99.8 8E-18 2.7E-22 190.8 27.2 294 392-716 26-381 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.6E-17 1.6E-21 182.2 31.1 248 802-1072 39-340 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 1.7E-16 5.9E-21 176.3 31.5 296 344-675 13-358 (361)
167 3c5m_A Oligogalacturonate lyas 99.8 4.5E-17 1.5E-21 185.2 26.9 299 323-654 19-385 (396)
168 2oiz_A Aromatic amine dehydrog 99.8 6.6E-16 2.3E-20 171.5 35.5 313 498-899 14-360 (361)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-16 5E-21 178.1 30.3 250 395-654 38-342 (365)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-14 6.6E-19 167.5 39.9 328 554-974 176-546 (567)
171 1qks_A Cytochrome CD1 nitrite 99.7 4.7E-14 1.6E-18 164.2 42.1 325 588-1017 165-546 (567)
172 3azo_A Aminopeptidase; POP fam 99.7 1.4E-15 4.8E-20 185.6 28.4 294 328-657 17-373 (662)
173 2gop_A Trilobed protease; beta 99.7 4.3E-15 1.5E-19 165.3 28.5 262 336-652 16-330 (347)
174 3c5m_A Oligogalacturonate lyas 99.7 6.8E-16 2.3E-20 175.4 20.9 244 399-656 38-332 (396)
175 1q7f_A NHL, brain tumor CG1071 99.7 4.2E-14 1.4E-18 152.2 33.3 241 800-1073 27-280 (286)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-14 5.5E-19 158.7 29.8 248 335-609 24-322 (329)
177 3fvz_A Peptidyl-glycine alpha- 99.7 2.6E-14 8.9E-19 157.0 30.1 248 801-1072 22-321 (329)
178 4a2l_A BT_4663, two-component 99.7 8.6E-10 2.9E-14 136.8 74.0 586 335-1072 43-658 (795)
179 4a2l_A BT_4663, two-component 99.7 1.7E-10 6E-15 143.0 66.9 535 335-1008 88-658 (795)
180 3azo_A Aminopeptidase; POP fam 99.7 7.8E-15 2.7E-19 179.0 27.2 268 392-670 19-341 (662)
181 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-13 5E-18 147.9 33.1 248 331-610 26-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 1E-13 3.4E-18 153.1 29.4 274 335-644 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.5E-18 167.4 31.8 250 394-655 122-416 (710)
184 3e5z_A Putative gluconolactona 99.6 2.6E-13 8.8E-18 146.8 28.2 249 325-612 18-289 (296)
185 2gop_A Trilobed protease; beta 99.6 4.2E-13 1.4E-17 149.1 29.9 285 580-1011 16-332 (347)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.6E-13 5.6E-18 168.0 28.5 250 332-611 122-416 (710)
187 3dsm_A Uncharacterized protein 99.6 3.4E-13 1.2E-17 147.7 28.1 278 355-661 15-309 (328)
188 3v9f_A Two-component system se 99.6 9.9E-09 3.4E-13 126.9 71.5 592 335-1072 19-655 (781)
189 2mad_H Methylamine dehydrogena 99.6 1.1E-11 3.6E-16 137.4 39.9 204 806-1017 128-358 (373)
190 2z2n_A Virginiamycin B lyase; 99.6 1.5E-11 5.1E-16 133.1 39.3 285 330-654 10-296 (299)
191 3dsm_A Uncharacterized protein 99.6 5.4E-13 1.9E-17 146.1 27.8 272 706-1017 15-309 (328)
192 2bkl_A Prolyl endopeptidase; m 99.6 3.2E-13 1.1E-17 164.9 27.7 249 393-655 117-399 (695)
193 3sjl_D Methylamine dehydrogena 99.6 2.6E-12 9E-17 139.3 31.1 204 805-1017 139-371 (386)
194 2dg1_A DRP35, lactonase; beta 99.6 6.5E-13 2.2E-17 146.5 27.0 261 397-673 6-288 (333)
195 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.8E-16 136.4 37.5 281 341-659 27-356 (373)
196 3no2_A Uncharacterized protein 99.5 2E-12 7E-17 136.8 28.8 245 349-629 7-272 (276)
197 3no2_A Uncharacterized protein 99.5 1.5E-12 5.2E-17 137.8 27.7 194 813-1017 4-203 (276)
198 2z2n_A Virginiamycin B lyase; 99.5 6.3E-11 2.2E-15 128.1 40.9 237 735-1011 57-297 (299)
199 3e5z_A Putative gluconolactona 99.5 2E-12 6.7E-17 139.8 27.9 238 392-654 23-287 (296)
200 3sjl_D Methylamine dehydrogena 99.5 1.6E-11 5.4E-16 133.3 34.7 302 535-947 38-384 (386)
201 3v9f_A Two-component system se 99.5 9.3E-09 3.2E-13 127.2 64.6 536 335-1009 66-656 (781)
202 2bkl_A Prolyl endopeptidase; m 99.5 3.1E-13 1.1E-17 165.0 22.2 249 332-612 118-400 (695)
203 1rwi_B Serine/threonine-protei 99.5 2.3E-12 7.8E-17 137.2 24.3 240 336-611 25-266 (270)
204 1rwi_B Serine/threonine-protei 99.5 7.3E-12 2.5E-16 133.3 27.7 237 804-1074 25-265 (270)
205 1yr2_A Prolyl oligopeptidase; 99.5 1.7E-12 5.9E-17 159.6 25.9 247 394-655 160-443 (741)
206 3c75_H MADH, methylamine dehyd 99.5 1.4E-11 4.8E-16 136.5 29.5 206 806-1017 180-410 (426)
207 2qc5_A Streptogramin B lactona 99.5 2.1E-10 7.1E-15 124.1 38.7 280 332-651 17-298 (300)
208 3c75_H MADH, methylamine dehyd 99.4 1.2E-11 4.1E-16 137.0 24.2 281 344-660 82-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 7.9E-12 2.7E-16 153.6 25.2 248 332-612 160-444 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.4E-15 126.7 28.1 246 735-1009 18-299 (314)
211 2qc5_A Streptogramin B lactona 99.4 1.4E-09 4.8E-14 117.5 36.1 243 392-652 15-259 (300)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.6E-10 5.3E-15 126.1 28.5 250 331-609 14-299 (314)
213 3hrp_A Uncharacterized protein 99.3 4.4E-10 1.5E-14 126.4 30.7 242 335-607 131-408 (409)
214 4a0p_A LRP6, LRP-6, low-densit 99.3 4.6E-06 1.6E-10 98.3 66.0 521 410-1016 8-556 (628)
215 3g4e_A Regucalcin; six bladed 99.3 6.5E-10 2.2E-14 119.7 29.7 228 736-998 14-261 (297)
216 3iuj_A Prolyl endopeptidase; h 99.3 1.8E-10 6.2E-15 139.9 26.6 253 332-613 126-409 (693)
217 3hrp_A Uncharacterized protein 99.3 1.3E-09 4.4E-14 122.6 31.0 253 802-1071 130-408 (409)
218 3g4e_A Regucalcin; six bladed 99.3 1.2E-09 3.9E-14 117.7 28.5 232 332-598 10-261 (297)
219 1xip_A Nucleoporin NUP159; bet 99.3 1.1E-10 3.8E-15 127.3 20.4 174 803-997 38-232 (388)
220 1mda_H Methylamine dehydrogena 99.3 1.2E-10 4E-15 127.1 20.3 196 806-1017 127-354 (368)
221 2qe8_A Uncharacterized protein 99.3 7.4E-11 2.5E-15 130.1 18.5 273 335-646 17-314 (343)
222 3dr2_A Exported gluconolactona 99.3 6.1E-10 2.1E-14 120.5 25.2 238 324-600 34-298 (305)
223 1kb0_A Quinohemoprotein alcoho 99.3 3.4E-09 1.2E-13 127.2 32.8 193 822-1017 189-515 (677)
224 3iuj_A Prolyl endopeptidase; h 99.2 4E-10 1.4E-14 137.0 24.8 245 394-655 126-407 (693)
225 3s94_A LRP-6, low-density lipo 99.2 6.9E-06 2.3E-10 96.8 59.9 521 416-1011 16-553 (619)
226 1yiq_A Quinohemoprotein alcoho 99.2 3E-09 1E-13 128.0 31.0 193 822-1017 182-513 (689)
227 1mda_H Methylamine dehydrogena 99.2 2.5E-10 8.6E-15 124.5 19.6 272 348-663 33-356 (368)
228 2qe8_A Uncharacterized protein 99.2 2.7E-10 9.4E-15 125.4 19.8 273 735-1070 17-318 (343)
229 2ghs_A AGR_C_1268P; regucalcin 99.2 5.8E-09 2E-13 113.8 29.3 225 737-999 51-292 (326)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.8E-08 1.3E-12 110.1 36.4 211 821-1071 151-376 (376)
231 1xip_A Nucleoporin NUP159; bet 99.2 2.9E-10 9.8E-15 124.1 17.7 190 735-953 38-230 (388)
232 2ghs_A AGR_C_1268P; regucalcin 99.2 1E-08 3.4E-13 111.9 29.9 225 336-599 50-292 (326)
233 1kb0_A Quinohemoprotein alcoho 99.2 9.8E-09 3.3E-13 123.2 31.2 332 500-903 78-536 (677)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.2 8E-08 2.7E-12 107.4 36.9 150 457-618 55-216 (376)
235 3dr2_A Exported gluconolactona 99.1 1.5E-08 5E-13 109.6 28.3 225 735-1000 45-298 (305)
236 1yiq_A Quinohemoprotein alcoho 99.1 1.9E-08 6.6E-13 120.9 30.7 333 500-903 71-534 (689)
237 2ece_A 462AA long hypothetical 99.1 4.6E-08 1.6E-12 106.3 30.1 237 744-997 93-399 (462)
238 2ece_A 462AA long hypothetical 99.1 4.4E-08 1.5E-12 106.5 29.6 237 809-1061 88-399 (462)
239 3hxj_A Pyrrolo-quinoline quino 99.1 7.6E-09 2.6E-13 113.5 21.4 301 446-917 24-324 (330)
240 1fwx_A Nitrous oxide reductase 99.0 2.6E-08 9E-13 112.3 24.1 279 535-922 90-436 (595)
241 3hxj_A Pyrrolo-quinoline quino 99.0 8.2E-09 2.8E-13 113.2 20.0 269 338-661 23-291 (330)
242 1fwx_A Nitrous oxide reductase 99.0 1.9E-08 6.6E-13 113.4 20.4 190 808-1009 90-361 (595)
243 2hz6_A Endoplasmic reticulum t 98.9 8E-10 2.7E-14 122.6 6.9 191 407-618 8-201 (369)
244 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00034 1.2E-08 82.4 64.3 530 349-971 9-554 (628)
245 1kv9_A Type II quinohemoprotei 98.9 8.4E-07 2.9E-11 106.4 33.3 193 822-1017 177-496 (668)
246 1npe_A Nidogen, entactin; glyc 98.9 7.6E-06 2.6E-10 86.1 35.1 256 408-675 1-261 (267)
247 2hz6_A Endoplasmic reticulum t 98.9 9.2E-10 3.1E-14 122.2 4.4 189 855-1080 8-199 (369)
248 1w6s_A Methanol dehydrogenase 98.9 2.5E-06 8.5E-11 99.6 33.4 166 848-1017 245-511 (599)
249 1npe_A Nidogen, entactin; glyc 98.8 8E-06 2.7E-10 85.9 34.1 224 397-635 36-263 (267)
250 1kv9_A Type II quinohemoprotei 98.8 5.2E-06 1.8E-10 99.4 35.5 335 500-905 67-520 (668)
251 3ei3_A DNA damage-binding prot 98.8 0.0015 5.2E-08 82.2 69.7 574 337-1009 329-999 (1158)
252 2iwa_A Glutamine cyclotransfer 98.8 9.3E-07 3.2E-11 90.6 23.9 200 804-1011 22-239 (266)
253 3s94_A LRP-6, low-density lipo 98.8 0.00083 2.9E-08 79.0 63.1 500 396-967 39-552 (619)
254 3ei3_A DNA damage-binding prot 98.8 0.0017 5.7E-08 81.9 68.7 568 400-1073 330-999 (1158)
255 2ad6_A Methanol dehydrogenase 98.8 4.6E-06 1.6E-10 97.7 32.2 166 848-1017 239-502 (571)
256 2iwa_A Glutamine cyclotransfer 98.7 3E-06 1E-10 86.8 25.6 220 833-1074 9-238 (266)
257 1flg_A Protein (quinoprotein e 98.7 2.4E-05 8.2E-10 91.6 35.6 149 866-1017 291-524 (582)
258 2ad6_A Methanol dehydrogenase 98.7 3.4E-05 1.1E-09 90.3 36.1 378 457-903 64-523 (571)
259 1flg_A Protein (quinoprotein e 98.7 6.5E-05 2.2E-09 88.0 37.6 378 458-902 71-544 (582)
260 1w6s_A Methanol dehydrogenase 98.6 9.4E-05 3.2E-09 86.3 37.0 381 457-901 64-530 (599)
261 3nol_A Glutamine cyclotransfer 98.6 3.4E-06 1.2E-10 85.0 21.3 184 805-998 45-244 (262)
262 3ott_A Two-component system se 98.6 0.0045 1.5E-07 75.8 65.5 534 396-1013 21-590 (758)
263 3nok_A Glutaminyl cyclase; bet 98.6 5.1E-06 1.7E-10 83.6 20.9 182 804-997 56-253 (268)
264 2xe4_A Oligopeptidase B; hydro 98.5 8.6E-06 2.9E-10 99.3 26.4 248 336-612 175-461 (751)
265 3nol_A Glutamine cyclotransfer 98.5 1E-05 3.5E-10 81.5 21.9 185 444-642 45-244 (262)
266 2fp8_A Strictosidine synthase; 98.5 1.8E-05 6.3E-10 85.8 24.7 240 397-653 19-313 (322)
267 3mbr_X Glutamine cyclotransfer 98.5 5.2E-05 1.8E-09 75.8 24.8 186 802-997 20-222 (243)
268 3ott_A Two-component system se 98.4 0.0097 3.3E-07 72.8 67.2 566 334-1008 21-625 (758)
269 3nok_A Glutaminyl cyclase; bet 98.4 2.2E-05 7.4E-10 79.1 21.5 183 444-642 57-254 (268)
270 2fp8_A Strictosidine synthase; 98.4 9.3E-05 3.2E-09 80.1 28.5 267 330-609 14-313 (322)
271 3qqz_A Putative uncharacterize 98.4 0.00015 5E-09 73.8 26.9 207 328-562 20-251 (255)
272 2p4o_A Hypothetical protein; p 98.4 9.7E-05 3.3E-09 79.2 27.3 229 397-644 32-279 (306)
273 3v64_C Agrin; beta propeller, 98.4 0.00065 2.2E-08 74.0 34.2 248 335-617 34-283 (349)
274 1k3i_A Galactose oxidase precu 98.4 5.9E-05 2E-09 90.6 27.8 121 534-655 190-325 (656)
275 2p4o_A Hypothetical protein; p 98.4 9.8E-05 3.4E-09 79.2 26.7 238 324-599 22-278 (306)
276 1ijq_A LDL receptor, low-densi 98.4 0.00087 3E-08 71.9 34.0 238 410-660 3-245 (316)
277 1k3i_A Galactose oxidase precu 98.3 6.9E-05 2.4E-09 90.0 27.2 278 339-642 190-530 (656)
278 3v64_C Agrin; beta propeller, 98.3 0.00083 2.8E-08 73.2 33.2 248 398-661 35-283 (349)
279 3v65_B Low-density lipoprotein 98.3 0.00053 1.8E-08 76.0 32.0 248 336-618 78-327 (386)
280 3v65_B Low-density lipoprotein 98.3 0.00051 1.7E-08 76.1 31.5 247 400-662 80-327 (386)
281 2xbg_A YCF48-like protein; pho 98.3 0.0023 8E-08 68.9 36.0 235 802-1071 79-320 (327)
282 3mbr_X Glutamine cyclotransfer 98.3 0.00017 6E-09 72.0 24.2 188 395-598 19-223 (243)
283 3qqz_A Putative uncharacterize 98.3 0.00087 3E-08 68.1 29.1 217 838-1071 21-251 (255)
284 3p5b_L Low density lipoprotein 98.3 0.0015 5.2E-08 72.5 33.5 249 410-671 85-338 (400)
285 3tc9_A Hypothetical hydrolase; 98.3 0.00024 8.3E-09 79.8 27.1 248 803-1071 137-428 (430)
286 1ijq_A LDL receptor, low-densi 98.2 0.0019 6.3E-08 69.4 32.5 232 357-617 10-246 (316)
287 2xe4_A Oligopeptidase B; hydro 98.2 0.0002 6.9E-09 87.2 26.8 202 393-607 169-398 (751)
288 4hw6_A Hypothetical protein, I 98.2 0.00066 2.3E-08 76.2 27.9 253 803-1071 139-431 (433)
289 2xbg_A YCF48-like protein; pho 98.1 0.0064 2.2E-07 65.5 33.8 280 335-650 36-319 (327)
290 3tc9_A Hypothetical hydrolase; 98.1 0.0013 4.3E-08 74.0 27.7 243 736-1008 138-429 (430)
291 3sov_A LRP-6, low-density lipo 98.0 0.0074 2.5E-07 64.4 31.8 239 410-661 6-246 (318)
292 3p5b_L Low density lipoprotein 98.0 0.0098 3.4E-07 66.0 33.4 234 357-617 92-328 (400)
293 3sov_A LRP-6, low-density lipo 98.0 0.009 3.1E-07 63.8 30.9 233 356-618 12-247 (318)
294 3amr_A 3-phytase; beta-propell 97.9 0.0031 1.1E-07 66.4 25.7 195 814-1017 40-272 (355)
295 3m0c_C LDL receptor, low-densi 97.9 0.0083 2.9E-07 72.2 33.0 237 410-660 397-639 (791)
296 4hw6_A Hypothetical protein, I 97.9 0.0033 1.1E-07 70.5 26.5 239 335-608 139-432 (433)
297 2xzh_A Clathrin heavy chain 1; 97.8 0.044 1.5E-06 56.4 30.4 234 341-609 73-332 (365)
298 3kya_A Putative phosphatase; s 97.8 0.0087 3E-07 67.0 27.6 252 736-1013 140-479 (496)
299 3m0c_C LDL receptor, low-densi 97.8 0.022 7.6E-07 68.5 33.0 215 395-617 422-640 (791)
300 3kya_A Putative phosphatase; s 97.7 0.0071 2.4E-07 67.7 25.7 250 398-657 140-479 (496)
301 1n7d_A LDL receptor, low-densi 97.7 0.00037 1.2E-08 83.6 15.9 205 803-1017 406-622 (699)
302 2p9w_A MAL S 1 allergenic prot 97.7 0.0066 2.3E-07 63.3 23.1 202 804-1009 14-265 (334)
303 3amr_A 3-phytase; beta-propell 97.7 0.011 3.7E-07 62.3 24.9 193 457-660 42-271 (355)
304 1n7d_A LDL receptor, low-densi 97.6 0.00027 9.4E-09 84.7 13.4 235 416-662 384-623 (699)
305 1bpo_A Protein (clathrin); cla 97.5 0.12 4.1E-06 55.5 29.3 236 340-609 71-331 (494)
306 2xzh_A Clathrin heavy chain 1; 97.4 0.16 5.3E-06 52.4 35.5 229 807-1072 71-331 (365)
307 3a9g_A Putative uncharacterize 97.3 0.065 2.2E-06 58.0 26.5 196 803-1009 29-296 (354)
308 2ism_A Putative oxidoreductase 97.3 0.056 1.9E-06 58.6 25.3 100 803-905 31-153 (352)
309 1bpo_A Protein (clathrin); cla 97.3 0.31 1E-05 52.4 35.2 230 807-1073 70-331 (494)
310 2p9w_A MAL S 1 allergenic prot 97.2 0.013 4.6E-07 61.0 18.4 167 840-1009 9-215 (334)
311 3pbp_A Nucleoporin NUP82; beta 97.2 0.016 5.5E-07 62.1 19.2 110 807-918 25-159 (452)
312 3sre_A PON1, serum paraoxonase 97.2 0.12 4E-06 55.4 25.7 205 803-1017 50-308 (355)
313 3a9g_A Putative uncharacterize 97.2 0.21 7.1E-06 54.0 28.3 232 334-597 28-330 (354)
314 2vpj_A Kelch-like protein 12; 97.2 0.049 1.7E-06 57.7 23.0 233 813-1083 14-286 (301)
315 2ism_A Putative oxidoreductase 97.1 0.13 4.3E-06 55.8 26.3 107 335-461 31-152 (352)
316 3ii7_A Kelch-like protein 7; p 97.1 0.073 2.5E-06 56.5 23.8 232 815-1084 13-281 (306)
317 2g8s_A Glucose/sorbosone dehyd 97.1 0.092 3.1E-06 56.9 24.6 235 804-1071 19-350 (353)
318 2xn4_A Kelch-like protein 2; s 97.0 0.13 4.3E-06 54.5 24.9 232 813-1082 15-283 (302)
319 2vpj_A Kelch-like protein 12; 96.9 0.11 3.9E-06 54.8 23.4 188 812-1013 61-282 (301)
320 2xtc_A F-box-like/WD repeat-co 96.8 0.00088 3E-08 53.4 3.9 35 1-35 1-35 (90)
321 3das_A Putative oxidoreductase 96.8 0.73 2.5E-05 49.0 28.9 100 804-905 203-326 (347)
322 3sre_A PON1, serum paraoxonase 96.8 0.76 2.6E-05 49.1 29.8 207 398-617 51-308 (355)
323 2g8s_A Glucose/sorbosone dehyd 96.7 0.45 1.5E-05 51.4 26.1 236 397-640 18-340 (353)
324 3ii7_A Kelch-like protein 7; p 96.7 0.23 8E-06 52.5 23.3 187 812-1013 54-276 (306)
325 2xn4_A Kelch-like protein 2; s 96.7 0.13 4.4E-06 54.4 21.1 235 408-656 16-279 (302)
326 4asc_A Kelch repeat and BTB do 96.7 0.23 8E-06 52.7 23.3 180 823-1014 13-226 (315)
327 1zgk_A Kelch-like ECH-associat 96.6 0.16 5.5E-06 53.8 21.6 234 811-1083 22-295 (308)
328 2uvk_A YJHT; unknown function, 96.4 0.37 1.3E-05 52.3 23.5 241 812-1086 18-353 (357)
329 4asc_A Kelch repeat and BTB do 96.4 0.33 1.1E-05 51.6 22.6 232 411-657 8-281 (315)
330 1xi4_A Clathrin heavy chain; a 96.4 0.2 6.7E-06 62.3 22.1 198 807-1017 70-297 (1630)
331 2be1_A Serine/threonine-protei 96.2 0.034 1.2E-06 58.9 12.7 201 857-1078 11-236 (339)
332 1tl2_A L10, protein (tachylect 96.2 0.045 1.6E-06 52.9 11.9 145 844-1000 41-201 (236)
333 3pbp_A Nucleoporin NUP82; beta 96.1 0.21 7.2E-06 53.7 17.8 108 804-912 67-207 (452)
334 1zgk_A Kelch-like ECH-associat 96.0 0.36 1.2E-05 51.1 20.2 187 813-1013 70-291 (308)
335 1tl2_A L10, protein (tachylect 96.0 0.082 2.8E-06 51.1 12.7 148 803-960 41-204 (236)
336 3das_A Putative oxidoreductase 96.0 2.1 7.3E-05 45.4 28.7 121 326-462 23-158 (347)
337 2woz_A Kelch repeat and BTB do 95.8 0.85 2.9E-05 48.4 21.8 227 419-658 25-292 (318)
338 2uvk_A YJHT; unknown function, 95.8 0.82 2.8E-05 49.5 22.1 142 866-1017 168-350 (357)
339 3sbq_A Nitrous-oxide reductase 95.7 3.5 0.00012 45.9 26.4 310 593-920 73-481 (638)
340 1xi4_A Clathrin heavy chain; a 95.6 0.36 1.2E-05 60.1 19.1 236 342-611 73-333 (1630)
341 2woz_A Kelch repeat and BTB do 95.5 1.3 4.5E-05 46.8 21.9 193 809-1015 52-293 (318)
342 1cru_A Protein (soluble quinop 95.4 2.2 7.6E-05 47.6 24.0 113 886-998 26-163 (454)
343 1cru_A Protein (soluble quinop 95.3 1 3.5E-05 50.3 20.9 161 844-1010 27-260 (454)
344 2j4b_A TAF5, transcription ini 95.1 0.022 7.6E-07 51.0 5.2 78 72-150 33-116 (138)
345 2nxp_A Transcription initiatio 94.7 0.037 1.3E-06 50.9 5.5 79 72-150 52-136 (156)
346 3s25_A Hypothetical 7-bladed b 94.1 6.5 0.00022 40.9 24.7 182 339-566 57-257 (302)
347 2be1_A Serine/threonine-protei 94.0 0.12 4.2E-06 54.6 8.4 194 457-658 12-236 (339)
348 1uuj_A Platelet-activating fac 93.9 0.044 1.5E-06 43.4 3.6 54 5-58 10-65 (88)
349 2j49_A Transcription initiatio 93.8 0.022 7.5E-07 51.6 1.9 82 67-150 31-118 (148)
350 3s25_A Hypothetical 7-bladed b 93.6 7.8 0.00027 40.3 28.8 180 402-610 58-256 (302)
351 3sbq_A Nitrous-oxide reductase 93.4 3.9 0.00013 45.5 18.7 195 812-1010 140-409 (638)
352 2zwa_A Leucine carboxyl methyl 93.3 4.1 0.00014 48.5 21.1 196 812-1013 396-639 (695)
353 3qhy_B Beta-lactamase inhibito 91.5 11 0.00038 38.7 19.1 222 336-609 25-246 (282)
354 4hvt_A Ritya.17583.B, post-pro 90.3 34 0.0012 40.4 27.0 250 339-611 133-431 (711)
355 3q6k_A 43.2 kDa salivary prote 90.3 17 0.00058 38.9 19.4 171 824-996 124-341 (381)
356 3qhy_B Beta-lactamase inhibito 89.6 20 0.00068 36.7 20.2 183 804-1009 64-246 (282)
357 2zwa_A Leucine carboxyl methyl 88.8 13 0.00046 44.0 19.3 200 451-656 396-638 (695)
358 2wg3_C Hedgehog-interacting pr 88.7 33 0.0011 38.0 25.9 56 397-452 14-79 (463)
359 3b7f_A Glycosyl hydrolase, BNR 88.5 31 0.0011 37.4 25.7 260 802-1081 54-378 (394)
360 4hvt_A Ritya.17583.B, post-pro 88.4 35 0.0012 40.3 22.2 244 401-652 133-429 (711)
361 3q6k_A 43.2 kDa salivary prote 87.8 32 0.0011 36.8 20.9 171 466-640 124-341 (381)
362 4gq2_M Nucleoporin NUP120; bet 77.9 88 0.003 38.5 20.4 37 845-882 237-273 (950)
363 3no0_A DNA gyrase subunit A; D 75.3 74 0.0025 32.2 19.6 196 806-1011 28-248 (276)
364 3kci_A Probable E3 ubiquitin-p 75.1 95 0.0032 33.4 27.9 162 737-916 107-292 (389)
365 2wg3_C Hedgehog-interacting pr 73.6 1.1E+02 0.0039 33.6 31.3 30 579-608 14-44 (463)
366 4gq2_M Nucleoporin NUP120; bet 72.0 18 0.00062 44.5 12.2 41 979-1019 236-276 (950)
367 3kci_A Probable E3 ubiquitin-p 68.2 1.3E+02 0.0045 32.2 26.0 194 805-1009 107-345 (389)
368 3zwu_A Alkaline phosphatase PH 62.8 17 0.00059 41.5 8.6 60 938-997 477-549 (592)
369 4a9v_A PHOX; hydrolase, beta-p 61.9 24 0.00083 39.7 9.3 60 938-997 477-549 (592)
370 3b7f_A Glycosyl hydrolase, BNR 59.8 1.9E+02 0.0064 31.0 32.8 263 396-673 54-391 (394)
371 1zi0_A DNA gyrase subunit A; b 59.4 1.6E+02 0.0056 30.2 27.2 151 745-917 108-277 (307)
372 3uc1_A DNA gyrase subunit A; D 58.8 1.7E+02 0.006 30.3 26.8 158 802-966 94-279 (327)
373 3no0_A DNA gyrase subunit A; D 58.2 1.6E+02 0.0055 29.7 20.8 113 802-917 67-196 (276)
374 3f7f_A Nucleoporin NUP120; nuc 55.9 1.7E+02 0.0058 34.1 15.0 80 801-884 160-259 (729)
375 3uc1_A DNA gyrase subunit A; D 53.2 2.1E+02 0.0073 29.6 23.7 163 696-875 107-279 (327)
376 4gco_A Protein STI-1; structur 53.2 53 0.0018 28.2 8.6 95 18-119 26-125 (126)
377 3f7f_A Nucleoporin NUP120; nuc 49.1 45 0.0015 38.8 8.9 37 980-1018 223-259 (729)
378 3mkr_A Coatomer subunit epsilo 48.3 49 0.0017 33.9 8.7 85 5-100 64-156 (291)
379 2wpv_A GET4, UPF0363 protein Y 47.9 38 0.0013 35.0 7.4 110 38-187 17-127 (312)
380 3lpz_A GET4 (YOR164C homolog); 46.8 48 0.0017 34.4 8.0 110 38-187 16-129 (336)
381 1wp5_A Topoisomerase IV; broke 44.3 2.9E+02 0.0098 28.6 25.2 198 696-917 3-225 (323)
382 1wp5_A Topoisomerase IV; broke 44.1 2.9E+02 0.0099 28.6 25.5 156 805-966 42-225 (323)
383 2zux_A YESW protein; beta-prop 44.1 3.9E+02 0.013 30.0 25.9 296 333-656 177-535 (591)
384 3bu8_A Telomeric repeat-bindin 42.9 34 0.0011 32.4 5.4 103 68-190 108-210 (235)
385 4fhn_B Nucleoporin NUP120; pro 41.8 90 0.0031 39.4 11.2 38 845-883 239-276 (1139)
386 2k9m_A RNA polymerase sigma fa 40.2 30 0.001 30.3 4.5 91 2-104 18-122 (130)
387 3zwu_A Alkaline phosphatase PH 37.2 1.1E+02 0.0038 34.9 9.8 64 531-596 477-548 (592)
388 1suu_A DNA gyrase subunit A; t 37.1 3.6E+02 0.012 27.6 27.7 204 696-917 6-231 (312)
389 1zi0_A DNA gyrase subunit A; b 35.5 3.8E+02 0.013 27.4 26.8 192 406-608 1-225 (307)
390 4a9v_A PHOX; hydrolase, beta-p 35.0 1.7E+02 0.0057 33.1 10.4 65 531-597 477-549 (592)
391 3mez_B Mannose-specific lectin 34.6 1.7E+02 0.0059 24.6 8.4 90 947-1082 23-113 (113)
392 2vgx_A Chaperone SYCD; alterna 34.4 1.2E+02 0.0042 26.7 8.1 15 86-100 101-115 (148)
393 2d68_A FOP, FGFR1OP; alpha hel 34.0 40 0.0014 26.5 3.7 28 8-35 21-48 (82)
394 4ga2_A E3 SUMO-protein ligase 30.9 2.2E+02 0.0076 25.0 9.3 71 44-121 41-111 (150)
395 2cn3_A Xyloglucanase, beta-1,4 30.5 7.2E+02 0.025 29.2 35.3 432 579-1082 23-562 (737)
396 4asv_A Small glutamine-rich te 29.3 30 0.001 27.6 2.4 19 1-19 15-33 (92)
397 3bqo_A Telomeric repeat-bindin 29.2 1.2E+02 0.004 28.4 6.5 94 51-153 95-188 (211)
398 3l6v_A GYRA, DNA gyrase subuni 29.1 5.3E+02 0.018 27.2 28.5 64 587-651 4-74 (370)
399 2xcb_A PCRH, regulatory protei 28.8 1.6E+02 0.0055 25.5 7.9 13 87-99 99-111 (142)
400 4fhn_B Nucleoporin NUP120; pro 27.3 52 0.0018 41.6 5.5 41 980-1020 239-279 (1139)
401 4h3o_A Lectin; cadmium, plant 27.0 2.7E+02 0.0091 23.0 11.2 26 806-832 53-78 (105)
402 1suu_A DNA gyrase subunit A; t 26.1 5.4E+02 0.018 26.3 29.0 199 744-966 6-231 (312)
403 2kck_A TPR repeat; tetratricop 25.8 74 0.0025 25.7 4.7 55 44-102 50-105 (112)
404 4gof_A Small glutamine-rich te 25.8 33 0.0011 24.2 1.8 16 4-19 1-16 (52)
405 3u4t_A TPR repeat-containing p 25.4 1.8E+02 0.0062 28.5 8.5 110 6-119 3-118 (272)
406 1kdl_A YOPD protein; yersinia, 24.8 41 0.0014 19.3 1.7 16 4-19 3-18 (26)
407 3mkr_A Coatomer subunit epsilo 24.2 3.4E+02 0.012 27.2 10.4 13 87-99 114-126 (291)
408 2k9l_A RNA polymerase sigma fa 23.8 65 0.0022 24.9 3.4 36 2-37 27-63 (76)
409 3gyz_A Chaperone protein IPGC; 23.2 2.1E+02 0.0072 25.4 7.5 87 6-104 9-102 (151)
410 3upv_A Heat shock protein STI1 22.7 2.1E+02 0.0071 23.8 7.2 82 15-102 14-100 (126)
411 3sz7_A HSC70 cochaperone (SGT) 22.2 1.8E+02 0.006 26.0 7.0 89 7-101 12-106 (164)
412 3iug_A RHO/CDC42/RAC GTPase-ac 22.1 52 0.0018 32.2 3.3 39 8-49 40-78 (229)
413 2lni_A Stress-induced-phosphop 21.8 3.2E+02 0.011 22.5 8.4 89 8-102 19-112 (133)
414 2nsz_A Programmed cell death p 21.6 1.3E+02 0.0043 26.2 5.3 24 80-103 13-36 (129)
415 1vk8_A Hypothetical protein TM 21.5 10 0.00035 31.7 -1.7 32 28-60 41-72 (106)
416 2dba_A Smooth muscle cell asso 21.4 3.5E+02 0.012 22.9 8.8 15 45-59 76-90 (148)
417 3q49_B STIP1 homology and U bo 21.2 2E+02 0.007 24.2 7.0 90 6-101 9-104 (137)
418 2ion_A PDCD4, programmed cell 20.8 1.3E+02 0.0044 27.1 5.3 24 80-103 15-38 (152)
419 2xz2_A CSTF-50, isoform B; RNA 20.6 1.1E+02 0.0037 22.7 3.6 31 4-34 15-45 (66)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.2e-69 Score=648.43 Aligned_cols=567 Identities=22% Similarity=0.344 Sum_probs=486.5
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
.+.|+||++.|++++|||||+ +||+|+.|++|+|||. +++++.+ +.+|.+.|++++|||
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 366999999999999999998 6899999999999995 6776654 778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
||++||+++.|++|+|||.. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+.. ........+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999964 4433 37889999999999999999 89999999999999954 555667788999
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
.+..+.+.+ ++..+++++.++.+++|+... ........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 999998854 667899999999999998553 445566678889999999999999999986 667999995 677
Q ss_pred eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 646 (1103)
.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|
T Consensus 213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 888888887 89999999999999999999999999996 46777777765 4568999999999999999999999
Q ss_pred EEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee
Q 001310 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1103)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 726 (1103)
++|+... +.+..+.
T Consensus 287 ~~w~~~~-~~~~~~~----------------------------------------------------------------- 300 (577)
T 2ymu_A 287 KLWNRNG-QLLQTLT----------------------------------------------------------------- 300 (577)
T ss_dssp EEEETTS-CEEEEEC-----------------------------------------------------------------
T ss_pred EEEeCCC-cEEEEEe-----------------------------------------------------------------
Confidence 9999643 2222221
Q ss_pred eccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCee
Q 001310 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1103)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 806 (1103)
+|...|.+++|+|+++.+++++.||.+++|+..... +... .+|...+.
T Consensus 301 -----~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~~----~~~~~~v~ 348 (577)
T 2ymu_A 301 -----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQTL----TGHSSSVW 348 (577)
T ss_dssp -----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEEE----CCCSSCEE
T ss_pred -----cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------eEEE----eCCCCCEE
Confidence 256778889999999999999999999999864321 1111 14888999
Q ss_pred EEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC
Q 001310 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1103)
+++|+|+++++++++ ++.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~ 425 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGH 425 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCC
Confidence 999999999999997 799999996 5788889999999999999999 8999999999999999995 57888999999
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEEC
Q 001310 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEA 964 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~ 964 (1103)
...|++++|+||+++|++++.|++|++||... + .+....+|.. .|.+++|+|||++|+++ .|+.|++||.
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 99999999999999999999999999999764 2 2333344443 79999999999999995 7899999995
Q ss_pred CCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee
Q 001310 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP 1044 (1103)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1044 (1103)
+++++.. +.+|...|++++|+|||++|++++.||+|++||. +++.+..+. +|...|.
T Consensus 497 -~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------------------~h~~~v~- 553 (577)
T 2ymu_A 497 -NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------------------GHSSSVW- 553 (577)
T ss_dssp -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------------------CCSSCEE-
T ss_pred -CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------------------CCCCCEE-
Confidence 5777776 5689999999999999999999999999999996 566666665 6888886
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEc
Q 001310 1045 HAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus 1045 ~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
+++|+|+ +.+|++++.||+|++||
T Consensus 554 -~~~fs~d-g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 554 -GVAFSPD-GQTIASASSDKTVKLWN 577 (577)
T ss_dssp -EEEECTT-SSCEEEEETTSCEEEEC
T ss_pred -EEEEcCC-CCEEEEEeCCCEEEEeC
Confidence 5688998 89999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-66 Score=629.26 Aligned_cols=576 Identities=15% Similarity=0.181 Sum_probs=477.3
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.+++.+.+++|||||+ +||+++ ++.|+|||+.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4577889999999999 577776 57999999998876654 77999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC----CceEEEeCCCCceeEEeecCCCc
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
|+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|||+ .|++++.+ +.|++|| +++.+..+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999997655332 236789999999999999999 67777754 3566666 67788889999999
Q ss_pred eEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 488 v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
|.+++|+| ++. .|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. ++.|++||..+++
T Consensus 150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT 223 (611)
T ss_dssp EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 99999976 443 6999999999999999888888889999999999999999999999986 6669999999999
Q ss_pred eEEEEe-------cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC-CCCceEEEecCCCEEE
Q 001310 567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA 638 (1103)
Q Consensus 567 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~ 638 (1103)
.+..+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| +++.++
T Consensus 224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 298 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV 298 (611)
T ss_dssp EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence 888874 455 89999999999999999999999999999999999888654221 12334455 788999
Q ss_pred EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1103)
+++.|+.+++|+...+.....+.+|...|.+++++ |||+++++++.|++|++||+..+
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999988888889999999999997 78999999999999999998754
Q ss_pred CCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC
Q 001310 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1103)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1103)
... .....+|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 357 ~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~--- 409 (611)
T 1nr0_A 357 ISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK--- 409 (611)
T ss_dssp CEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE---
T ss_pred cee-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee---
Confidence 321 12224588999999999876 588999999999999765321000 0 00001
Q ss_pred CCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1103)
Q Consensus 799 ~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1103)
......+++++|+|+.++++.++.+++|+ .++ +..+. +...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus 410 --~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 410 --LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp --CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred --cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence 23356789999999988888889999998 344 45554 778899999999 899999999999999999987653
Q ss_pred --EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC-CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-
Q 001310 879 --ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 954 (1103)
Q Consensus 879 --~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~- 954 (1103)
+.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|. ..|.+++|||||++||++
T Consensus 483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEEE
T ss_pred eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEEE
Confidence 334 67999999999999999999999999999999987 44211 00122344 389999999999999995
Q ss_pred eCCeEEEEECCCceEEE-EeeCCC-CcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 955 HETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 955 ~d~~v~iwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
.|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 89999999999876322 446789 89999999999998 9999999999999973
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-65 Score=671.14 Aligned_cols=619 Identities=14% Similarity=0.181 Sum_probs=514.8
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
...++.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 4457789999999999999998 689999999999999999988765 67899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1103)
|||++||+++.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987655 67899999999999997655589999999999999999999999999999
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-------------CccEEEEEEccCCCEEEEEecCCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
..|.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 6789999999999999999988766554321 23678899999999999986
Q ss_pred CceeEEEEeCCCCeeEEEEe-cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
++.+.+||..++.....+. +|. ..+.+++|+|+++.+++++.||.|++||+.++..+..+..| ...|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEEC
Confidence 3459999999999888776 444 89999999999999999999999999999999999988876 4569999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1103)
|+|+++++++.|+.|++|+..+......... .......+. +++..++.....+.+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVFQ----------------------ENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEEE----------------------TTEEEEEEEESSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEEc----------------------CCCcEEEEecCCcceE
Confidence 9999999999999999999764322111110 001111121 2333344444445555
Q ss_pred cccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCce
Q 001310 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1103)
Q Consensus 712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1103)
++...... ... .+...+.+++|+|+++.+++++.+|.+++|++..... .
T Consensus 948 ~~~~~~~~---~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~----------------------~ 996 (1249)
T 3sfz_A 948 LIAGKTGQ---IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV----------------------F 996 (1249)
T ss_dssp EEEESSCC---EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC----------------------E
T ss_pred EEecCcce---EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce----------------------e
Confidence 55433211 111 1346799999999999999999999999998765321 2
Q ss_pred eeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 001310 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1103)
Q Consensus 792 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1103)
... .+|...|.+++|+|+|+++++++ |+.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus 997 ~~~----~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 997 SSG----VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp EEC----CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred eec----ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence 211 14889999999999999999997 7999999999988764 557889999999999 65 6788999999999
Q ss_pred EEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCE
Q 001310 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1103)
Q Consensus 871 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 950 (1103)
||+.+++.+..+.+|.+.|.+++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|||||++
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence 9999999999999999999999999999999999999999999999866 3445556554 8999999999999
Q ss_pred EEEE-eCCeEEEEECCCceEEEEe--------eCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccc
Q 001310 951 FLLV-HETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1103)
Q Consensus 951 l~~~-~d~~v~iwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~ 1021 (1103)
|+++ .||.|++||+.+++.+..+ ..+|...|++++|||||++|++++ |+|++||+.+++.+..+.
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence 9995 7899999999999887653 256899999999999999999885 899999999998776555
Q ss_pred cCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 1022 LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
+|...|. +++|+|+ +.+|++++.||.|++|++.+
T Consensus 1216 ---------------~~~~~i~--~~~~s~d-g~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1216 ---------------TNGTNLK--KIHVSPD-FRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ---------------CSSCCCC--CCEECSS-SCCEEEECTTCCEEEECCCC
T ss_pred ---------------ccCCccc--EEEECCC-CCEEEEecCCcEEEEEeecC
Confidence 3455565 4678888 88999999999999999853
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-63 Score=598.82 Aligned_cols=555 Identities=22% Similarity=0.346 Sum_probs=470.8
Q ss_pred CCCCCCCcchhhccccccCCccccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeee
Q 001310 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376 (1103)
Q Consensus 297 ~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~ 376 (1103)
++.|||.+..+..-- ......+.+....++++|.+|++.|++++|||||+ +||+|+.|++|+|||. +++.+..
T Consensus 21 ~~a~spdg~~las~~-~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~---- 93 (577)
T 2ymu_A 21 GVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT---- 93 (577)
T ss_dssp EEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE----
T ss_pred EEEECCCCCEEEEEe-CCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE----
Confidence 577889887664331 12223344556788999999999999999999998 6899999999999996 5665554
Q ss_pred EeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCce
Q 001310 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456 (1103)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~ 456 (1103)
+.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+|++.
T Consensus 94 ---------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-- 152 (577)
T 2ymu_A 94 ---------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ-- 152 (577)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--
T ss_pred ---------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--
Confidence 77899999999999999999999999999999976542 225678999999999999999
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1103)
.+++++.++.+++|+ ...........|...|.++++.+ ++.++++++.||.|++||. +.+....+..+...+.+++
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 153 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp CEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred cceecccccceeccc-cceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEE
Confidence 789999999999999 45566677788999999999854 6789999999999999995 4566677888999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 616 (1103)
|+|++++|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++||. +++.+..+
T Consensus 229 ~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~ 299 (577)
T 2ymu_A 229 FSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL 299 (577)
T ss_dssp ECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred ECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEE
Confidence 9999999999876 566999995 567788888877 89999999999999999999999999996 45677777
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCC
Q 001310 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 696 (1103)
Q Consensus 617 ~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 696 (1103)
..| ...|.+++|+|+++++++++.|+.|++|+..... +..+
T Consensus 300 ~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~------------------------------------ 340 (577)
T 2ymu_A 300 TGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL------------------------------------ 340 (577)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE------------------------------------
T ss_pred ecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE------------------------------------
Confidence 665 4568999999999999999999999999976432 1111
Q ss_pred CCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccc
Q 001310 697 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776 (1103)
Q Consensus 697 d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 776 (1103)
.+|...+.+++|+|+++.+++++.+|.+++|+....
T Consensus 341 ----------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------- 376 (577)
T 2ymu_A 341 ----------------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------- 376 (577)
T ss_dssp ----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------
T ss_pred ----------------------------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------
Confidence 125567889999999999999999999999984321
Q ss_pred ccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCC
Q 001310 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 855 (1103)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 855 (1103)
.+... . +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 377 -------------~~~~~--~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d 437 (577)
T 2ymu_A 377 -------------LLQTL--T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D 437 (577)
T ss_dssp -------------EEEEE--E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------EEEEe--c--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-C
Confidence 11111 1 4888999999999999999997 799999996 5788889999999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1103)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1103)
+++|++++.|++|++||. +++.+..+.+|...|.+++|+||+++|++++.|++|++||... + .++.+.+|..
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~- 509 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS- 509 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS-
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC-
Confidence 999999999999999996 5778889999999999999999999999999999999999653 3 3334455554
Q ss_pred CCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310 936 APSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
.|.+++|+|||++|+++ .|+.|++||. +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus 510 --~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 --SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 89999999999999985 7899999996 5788777 568999999999999999999999999999997
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.4e-64 Score=604.34 Aligned_cols=572 Identities=11% Similarity=0.107 Sum_probs=459.1
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
..+.+.+.+++|||||++||+++ +++|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34678889999999999999997 5699999998776444 7889999999999999999 8999999999999998
Q ss_pred CCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC-EEE
Q 001310 473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 545 (1103)
Q Consensus 473 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~ 545 (1103)
.+++ ....+.+|.+.|.+++|+| ++..|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7654 4567889999999999965 67889988865 3677776 5556667788999999999999987 588
Q ss_pred EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----C
Q 001310 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 620 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~ 620 (1103)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+... .
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8876 6679999999999999999888 89999999999999999999999999999999988887421 3
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccccc---ceeeeEEecCCceeeeeccCCceEecCCCCCC
Q 001310 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1103)
Q Consensus 621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1103)
+...|.+++|+|+|++|++++.|++|++||+.+++.+..+..+.. ....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 455799999999999999999999999999999887766543211 111111 24
Q ss_pred CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccc
Q 001310 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1103)
Q Consensus 698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 777 (1103)
+..+++++.|+.+++|+...... . ....+|...|.+++|+|+|++|++++.|+.|++||+.....
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~---~---~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~--------- 358 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSI---D---QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS--------- 358 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEE---E---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------
T ss_pred CCEEEEEeCCCcEEEEeCCCCCc---c---eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------
Confidence 77899999999999999764321 1 11246899999999999999999999999999999764321
Q ss_pred cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE---ecCCCCCeeEEEEcCC
Q 001310 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH 854 (1103)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~ 854 (1103)
.... ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+|
T Consensus 359 -------------~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 421 (611)
T 1nr0_A 359 -------------NRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA- 421 (611)
T ss_dssp -------------EECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred -------------eeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence 1111 12488999999999888766555689999999876543210 001234567899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc
Q 001310 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1103)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1103)
++++++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... +.. .+|.
T Consensus 422 dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~- 491 (611)
T 1nr0_A 422 DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP- 491 (611)
T ss_dssp TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS-
T ss_pred CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC-
Confidence 78777766 467899998 344 55555 88899999999999999999999999999998765322 122 2333
Q ss_pred CCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC-ceEEEE-eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 935 LAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 935 ~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
..|.+++|||||++|+++ .|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++||+.++.
T Consensus 492 --~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 492 --AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred --CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 379999999999999995 889999999998 666554 344599999999999999999999999999999998765
Q ss_pred eEE-eeccccccCCCCCCCceeeEeecc-CCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1012 VQC-RILSTAYLRPTTSHDKILCFCYCS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1012 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
... ... .+| ...|. +++|+|+ +. |++++.||+|++|++
T Consensus 570 ~~~~~~~------------------~~h~~~~v~--~v~fs~d-~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 570 DHPIIIK------------------GAHAMSSVN--SVIWLNE-TT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SCCEEET------------------TSSTTSCEE--EEEEEET-TE-EEEEETTSCEEEEEC
T ss_pred cccchhh------------------ccCcccCee--EEEEcCC-CE-EEEecCCCCEEEEec
Confidence 221 111 146 56676 5677787 66 999999999999997
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.3e-61 Score=582.92 Aligned_cols=558 Identities=11% Similarity=0.159 Sum_probs=485.0
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC----CeeeeeeeeEeeccccccceeeeeccCCCcc-EEEEEEC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~s 405 (1103)
..|.+.|.+++|||||+ +||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36888999999999999 577776 789999999988 65544 7789999 9999999
Q ss_pred C--CCCEEEEEeCCCeEEEEEecCCC-----ccccceEeccccccEEEEEEecCCCceEEEEEcCC----CceEEEeCCC
Q 001310 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1103)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~ 474 (1103)
| |+++||+++.||.|++||+.++. .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1123336778999999999999999 78888877 6788887 7
Q ss_pred CceeEEeecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCeeEEecCCCc---cEEEEEEccC-CCEEEEEec
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~ 549 (1103)
++.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788999999999999999965 444 899999999999999999988889988888 9999999999 999999986
Q ss_pred CCCCceeEEEEeCCCCeeEEEE-e---cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC--CC
Q 001310 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1103)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 566999999999999888 5 555 899999999 999999999999999999999999988876521 13
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
.+.++.|+ +++++++++.++.|++|++.+++.+..+.+|...+.++++ | + +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~----------------------~---l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N----------------------P---LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T----------------------T---TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c----------------------C---cEE
Confidence 45677775 8999999999999999999999899999999999988887 5 1 788
Q ss_pred eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1103)
Q Consensus 704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 783 (1103)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.||.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence 9999999999987 122 458899999999 667889999999999999865421
Q ss_pred cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 001310 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1103)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1103)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+++++|+ +++|++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence 1226788999999999999988999999999999988887 78899999998 67999999
Q ss_pred C-CCeEEEEEcCCceeE-EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCC-cccCCCCce
Q 001310 864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 940 (1103)
Q Consensus 864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 940 (1103)
. ||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+++. +....+ |.. .|.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEE
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCCC---cee
Confidence 9 999999999988766 77788999999999999999999999999999999998764 333444 443 899
Q ss_pred EEEEcC----------CCCEEEEE-eCCeEEEEECCCc-eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 941 HIQFHK----------DQTRFLLV-HETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 941 ~l~fs~----------dg~~l~~~-~d~~v~iwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
+++|+| ++++|+++ .|+.|++||+.++ +++.. +.+|...|++++|+||++ |++++.||+|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999 99999995 7899999999998 55555 778999999999999999 9999999999999987
Q ss_pred C
Q 001310 1009 N 1009 (1103)
Q Consensus 1009 ~ 1009 (1103)
+
T Consensus 614 ~ 614 (615)
T 1pgu_A 614 L 614 (615)
T ss_dssp -
T ss_pred c
Confidence 5
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-58 Score=608.82 Aligned_cols=589 Identities=16% Similarity=0.177 Sum_probs=499.2
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987555 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
|+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988777889999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeEEEEeccc----------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 620 (1103)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||+.++..+..+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 6679999999998877665321 1123688899999999999887 689999999999988877632
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcc
Q 001310 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1103)
Q Consensus 621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1103)
+...+.+++|+|+++++++++.++.|++|+..++..+..+.+|...|.+++|+ |+++.
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~ 896 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS 896 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCE
Confidence 24579999999999999999999999999999999999999999999999997 78889
Q ss_pred ceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCC
Q 001310 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 780 (1103)
Q Consensus 701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 780 (1103)
+++++.|+.+++|++......... .......+.+.+++..++.....+.+.++.....
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 954 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG-------------- 954 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC--------------
T ss_pred EEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc--------------
Confidence 999999999999997643222211 1123345667777777777777777776653322
Q ss_pred eeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEE
Q 001310 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 859 (1103)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l 859 (1103)
.... .+...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|
T Consensus 955 --------~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 1018 (1249)
T 3sfz_A 955 --------QIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTL 1018 (1249)
T ss_dssp --------CEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCE
T ss_pred --------eEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEE
Confidence 1111 1466799999999999999998 79999999999999999999999999999999 89999
Q ss_pred EEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCc
Q 001310 860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 939 (1103)
Q Consensus 860 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 939 (1103)
++++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++... ...+|.. .|
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~-----~~~~~~~---~v 1088 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIER-----DFTCHQG---TV 1088 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCE-----EEECCSS---CC
T ss_pred EEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeE-----EEcccCC---cE
Confidence 99999999999999998876 455799999999999975 67889999999999999977433 3334443 79
Q ss_pred eEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310 940 THIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus 940 ~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
.+++|+|||++++++ .|+.|++||+.+++++.. +.+|...|++++|+|||++|++++.||+|++||+.+++.+..+.+
T Consensus 1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecc
Confidence 999999999999995 889999999999998876 668999999999999999999999999999999999987765532
Q ss_pred ccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310 1019 TAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
..... ...+|...|. +++|+|+ +.+|++++ |.|++||+...+.
T Consensus 1168 ~~~~~----------~~~~~~~~v~--~l~fs~d-g~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1168 ISVEE----------GTATHGGWVT--DVCFSPD-SKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp CC-----------------CCSCCC--EEEECTT-SSCEEEES--SSEEEBCSSSCBC
T ss_pred ccccc----------cccccCceEE--EEEECCC-CCEEEECC--CeEEEEECCCCce
Confidence 21111 0124666676 6788998 88888875 8999999865443
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-57 Score=567.34 Aligned_cols=595 Identities=11% Similarity=0.102 Sum_probs=451.6
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
...+|.+.|++++|+|||+ +||+|+.||+|+|||..+++.... ..|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEE--------------------cCCCCCEEEEEEcC-C
Confidence 3459999999999999998 799999999999999887665432 24788999999999 8
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----------
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 478 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---------- 478 (1103)
++||+++.|++|+|||+.+++.+. .+. |...|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987655 443 668899999999999 8999999999999999988764
Q ss_pred -EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------------------CccEEEEEEcc
Q 001310 479 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 539 (1103)
Q Consensus 479 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s~ 539 (1103)
..+.+|.++|.+++|+|. ++..+++++.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999864 34689999999999 9999998877777654 35799999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeeEEE--Ee---ccc----------ccCCceEEEEEc----CCC-CEEEEEeCC
Q 001310 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD 599 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----~~~-~~l~~~~~d 599 (1103)
+|++|++++. ++.|++||+.+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 56699999999987654 21 121 123579999995 443 456667665
Q ss_pred -----CcEEEEECC------------------CCeeEEEEcCCCCCCCCceEEEec----------CCCEEEEEECCCeE
Q 001310 600 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 646 (1103)
Q Consensus 600 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~g~~l~~~~~dg~i 646 (1103)
+.+.+|++. +++....+... +...+..+.+.+ ++..+++++.|+.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378899852 22334444321 123467777755 34578999999999
Q ss_pred EEEEcCCCCeeEe-------ccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310 647 KILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1103)
Q Consensus 647 ~iw~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 719 (1103)
++|++.++..... +..+...++++++++. ..++|+.....
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~ 423 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA 423 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhc
Confidence 9999987754322 3445566776666521 22345432111
Q ss_pred CccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCC
Q 001310 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1103)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1103)
.... ..+..+|...+.+++|+|+++.+++++.|++|++||+....... .+++... .......
T Consensus 424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~------l~~~~~~ 485 (902)
T 2oaj_A 424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN------LSRTLNK 485 (902)
T ss_dssp TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE------HHHHTTC
T ss_pred ccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee------chhhcCC
Confidence 1111 11234577788889999999999999999999999987653200 0000000 0000012
Q ss_pred CCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCce--------------------------------------------
Q 001310 800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-------------------------------------------- 834 (1103)
Q Consensus 800 ~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~-------------------------------------------- 834 (1103)
+|...|.+++|+|||++||+++ ||+|++||+.+++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 5889999999999999999998 7999999998662
Q ss_pred -eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-----Eec-cCCCCEEEEEEc-----cCC---C
Q 001310 835 -TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---N 899 (1103)
Q Consensus 835 -~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~dg---~ 899 (1103)
++..+.+|.+.|++++||| || +||+|+.|++|++||+.++..+. .+. +|.+.|++++|| ||| +
T Consensus 566 ~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 4677888999999999999 88 99999999999999998877653 233 899999999999 886 8
Q ss_pred EEEEEeCCCeEEEEEc---CCCceeeeeeeecCCCccc--CCCCceEEE-Ec----------------------CCCCEE
Q 001310 900 ILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRF 951 (1103)
Q Consensus 900 ~l~s~s~dg~I~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-fs----------------------~dg~~l 951 (1103)
+|++++.|++|++||+ .+|+... .+.++.. ..++|.+++ |+ ++|.+|
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred EEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence 9999999999999999 6665332 2222221 123566666 66 455555
Q ss_pred EEEeCCeEEEEECCCceEEEEeeCCCCcCeEEE---E------EccCCCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310 952 LLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus 952 ~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
+++ +..++||++.++++.... -.|...+.++ . |++++..|++++.||+|++|++.+++.+..+..
T Consensus 719 ~~~-~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 719 ITG-FDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEC-SSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEe-ccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 554 889999999999998875 4555666666 5 789999999999999999999999999988773
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-57 Score=554.56 Aligned_cols=554 Identities=11% Similarity=0.111 Sum_probs=469.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC----CccccceEecccccc-EEEEEEec--CCCceEEEEEcCC
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 464 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~-v~~~~~s~--d~~~~~l~s~~~d 464 (1103)
...|.+.|.+++|||||++||+++ ++.|++||+.++ +... .+.+|... |.+++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346899999999999999999998 789999999987 4443 78899999 99999999 999 89999999
Q ss_pred CceEEEeCCCC--------ceeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEecCCCccE
Q 001310 465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 532 (1103)
Q Consensus 465 ~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i 532 (1103)
|.|++||+.++ +.+..+..|...|.+++|++ ++.+|++++.+ +.|++|| ..+....+..+...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 67788899999999999964 77899999988 6888886 667778888999999
Q ss_pred EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001310 533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 607 (1103)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 6888765 6679999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCeeEEEE-c---CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccc----cceeeeEEecCCcee
Q 001310 608 NKVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVT 679 (1103)
Q Consensus 608 ~~~~~~~~~-~---~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~ 679 (1103)
.+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-------
T ss_pred CCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-------
Confidence 999999888 3 34 4568999999 99999999999999999999998887776653 33333333
Q ss_pred eeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEE
Q 001310 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1103)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~ 759 (1103)
+++..+++++.|+.+++|++....... ...+|...|.+++| |+ +++++.||.++
T Consensus 307 ----------------~~~~~l~~~~~~g~i~~~d~~~~~~~~------~~~~~~~~v~~~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 307 ----------------TGNGRIISLSLDGTLNFYELGHDEVLK------TISGHNKGITALTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp ----------------EETTEEEEEETTSCEEEEETTEEEEEE------EECCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred ----------------CCCCeEEEEECCCCEEEEECCCCcEEE------EEeCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence 367889999999999999987532211 11358899999999 88 99999999999
Q ss_pred EeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEE
Q 001310 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 838 (1103)
Q Consensus 760 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~ 838 (1103)
+|++.. +. .+|...|.++++ +++..+++++ |+.+++||+.+++...
T Consensus 361 ~w~~~~-------------------------~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~- 407 (615)
T 1pgu_A 361 EWSSSS-------------------------MH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS- 407 (615)
T ss_dssp ETTTTE-------------------------EE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-
T ss_pred EEEchh-------------------------hc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-
Confidence 998540 11 148899999999 5556666665 8999999998765433
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 001310 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG 917 (1103)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~ 917 (1103)
.+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+
T Consensus 408 ------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 408 ------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp ------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTE
T ss_pred ------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCC
Confidence 678999999 88888877 88999999999999888887 88999999999 899999999 99999999998
Q ss_pred CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc--------
Q 001310 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-------- 988 (1103)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~-------- 988 (1103)
++... ....+|.. .|.+++|+|+|++|+++ .|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 477 ~~~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 477 LEVSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEEEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred ccccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence 65321 33444443 89999999999999996 7899999999999999874444999999999999
Q ss_pred --CCCEEEEEecCCcEEEEeCCCc-eeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCc
Q 001310 989 --DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1065 (1103)
Q Consensus 989 --dg~~l~t~~~dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~ 1065 (1103)
|+++|++++.||+|++||+.++ +.+..+. +|...|. +++|+|+ +. |++++.||.
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------------~h~~~v~--~l~~s~~-~~-l~s~~~d~~ 606 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-------------------AHKDGVN--NLLWETP-ST-LVSSGADAC 606 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-------------------SSTTCEE--EEEEEET-TE-EEEEETTSC
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCceechhhh-------------------cCccceE--EEEEcCC-CC-eEEecCCce
Confidence 9999999999999999999988 5555554 5777786 5677787 67 999999999
Q ss_pred EEEEccC
Q 001310 1066 VYVIEPN 1072 (1103)
Q Consensus 1066 v~vw~~~ 1072 (1103)
|++|++.
T Consensus 607 v~iw~~~ 613 (615)
T 1pgu_A 607 IKRWNVV 613 (615)
T ss_dssp EEEEEEC
T ss_pred EEEEeee
Confidence 9999984
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-56 Score=553.81 Aligned_cols=596 Identities=9% Similarity=0.035 Sum_probs=437.2
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
..+|...|++++|+||+++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999988765332 235788999999999 77 799999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-----------EEecCCCccEEEEEEccC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 540 (1103)
+.+++++..+. |...|++++|++ ++.++++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 778999999965 6789999999999999999887653 123457789999999996
Q ss_pred C-CEEEEEecCCCCceeEEEEeCCCCeeEEEEecc---------------cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001310 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1103)
Q Consensus 541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 604 (1103)
+ ..+++++. ++.| +||+++++.++.+..+ ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777654 6679 9999999999888766 122367999999999999999999999999
Q ss_pred EECCCCeeEEEEcC-----CC-----------CCCCCceEEEec----CC-CEEEEEECC-----CeEEEEEcCC-----
Q 001310 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 653 (1103)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~g-~~l~~~~~d-----g~i~iw~~~~----- 653 (1103)
||+.+++++..... +. +...|.+++|++ ++ .++++|+.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888431
Q ss_pred -------------CCeeEecc-ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310 654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1103)
Q Consensus 654 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 719 (1103)
.+....+. .+...+..+.+.+.......+ ..++..+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11122221 233444444443311000000 1345578888899999999985332
Q ss_pred Cccc-eeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC
Q 001310 720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1103)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1103)
.... .........|...|.+++|++... .+|+..... . +... ...
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~----~~l 431 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD----YLL 431 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC----CSC
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC----Ccc
Confidence 1110 000111233567888888865322 234321000 0 0000 011
Q ss_pred CCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee----EE--ec-----CCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001310 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 866 (1103)
Q Consensus 799 ~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1103)
.+|...+.+++|+||+++|++++ |++|++||+.++... .. +. +|...|++++|+| |+++||+|+.||
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 25777888899999999999998 899999999877421 11 11 6888999999999 999999999999
Q ss_pred eEEEEEcCCc---------------------------------------------eeEEEeccCCCCEEEEEEccCCCEE
Q 001310 867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL 901 (1103)
Q Consensus 867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~dg~~l 901 (1103)
+|+||++.++ +++..+.+|.+.|++|+||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9999999866 2467888999999999999999 99
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeecCC-CcccCCCCceEEEEc-----CCC---CEEEEE-eCCeEEEEEC---CCce
Q 001310 902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLLV-HETHLAIYEA---EELT 968 (1103)
Q Consensus 902 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~fs-----~dg---~~l~~~-~d~~v~iwd~---~~~~ 968 (1103)
|+|+.|++|++||+.++.......+.... +|.. .|++++|| ||| ++|+++ .|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999886654322223343 5554 89999999 886 888885 8899999999 7888
Q ss_pred EEEEeeCCC-----CcCeEEEE-Ec----------------------cCCCEEEEEecCCcEEEEeCCCceeEEeecccc
Q 001310 969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus 969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
+...+ .+| ..+|.+++ |+ +++..|+++ +..|+||++.+++......
T Consensus 667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~--- 740 (902)
T 2oaj_A 667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF--- 740 (902)
T ss_dssp EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC---
T ss_pred EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc---
Confidence 87763 344 57788777 76 455555543 7789999999988775553
Q ss_pred ccCCCCCCCceeeEeeccCCceeeE-EEE------ECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310 1021 YLRPTTSHDKILCFCYCSCLHVYPH-AIA------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~------~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
+|...+..+ .+. ++++ +..|++++.||+|++|+++..+.
T Consensus 741 ----------------~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 741 ----------------KYPLAATGLSYISTVEKNNDRKN-LTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp ----------------SSCEEEEEEEEEEEECSSSCEEE-EEEEEEEETTSEEEEEETTTCCE
T ss_pred ----------------ccceeeeEEEEEEeccccccccC-ceEEEEEeCCCcEEEEECcchHH
Confidence 122112222 123 5666 78999999999999999966665
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.6e-48 Score=484.69 Aligned_cols=558 Identities=14% Similarity=0.177 Sum_probs=429.7
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
...+++.+|++.|.+++|||||+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 35578899999999999999998 689999999999999999987765 6679999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeec
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1103)
+|++++||+++.||.|++||+.+++.+. .+.+|...|++++|+|+++ .|++++.||+|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987555 6789999999999999999 7999999999999999987 67788899
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-ccEEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1103)
|...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999752 55799999999999999998888777666554 7899999999 9999999875 6679999
Q ss_pred eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001310 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~--~l~ 638 (1103)
|..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence 999999999998887 899999999999999999999999999999999999887663 4689999999987 455
Q ss_pred EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc--------
Q 001310 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS-------- 710 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i-------- 710 (1103)
+++ ++.+.+|++...... +.++ |+|..+++++.+...
T Consensus 289 ~~~-~~~~~~~~~~~~~~~------------~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~ 333 (814)
T 3mkq_A 289 SGF-DNGFTVLSLGNDEPT------------LSLD----------------------PVGKLVWSGGKNAAASDIFTAVI 333 (814)
T ss_dssp EEE-TTEEEEEECSCCSCC------------EEEC----------------------SSSEEEEECCTTSCTTCEEEEEC
T ss_pred EEe-CCCEEEEEcCCCCce------------eEEC----------------------CCCCEEEECcccccceeeeeeec
Confidence 555 567889987655322 2333 444444444333221
Q ss_pred -ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCC
Q 001310 711 -EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789 (1103)
Q Consensus 711 -~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1103)
..|++............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~--------------------- 389 (814)
T 3mkq_A 334 RGNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN--------------------- 389 (814)
T ss_dssp CSCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE---------------------
T ss_pred ccccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc---------------------
Confidence 123332222221111111 22556789999999999888887 89999998643210
Q ss_pred ceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCC---CEEEEEeCC
Q 001310 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDD 865 (1103)
Q Consensus 790 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~d 865 (1103)
.+...+.+++|+||++++++++ ++.|++|+. +.+|...+.+++|+| ++ .+|++++.|
T Consensus 390 ----------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d 450 (814)
T 3mkq_A 390 ----------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSD 450 (814)
T ss_dssp ----------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEET
T ss_pred ----------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecC
Confidence 1345678999999999999997 699999963 344677889999999 77 588889999
Q ss_pred CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEE------eCCCeEEEEEcCC---------------Cceeeee
Q 001310 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCR 924 (1103)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~------s~dg~I~iwd~~~---------------~~~~~~~ 924 (1103)
+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--.. +......
T Consensus 451 ~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (814)
T 3mkq_A 451 GFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFD 527 (814)
T ss_dssp TEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEE
T ss_pred CEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhhee
Confidence 9999999999999999988765 89999999999999 6666555554210 0000001
Q ss_pred eeecCCCcccCCCCceEEEEcCCCCEEEEEe-CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEE
Q 001310 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1103)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~-d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~ 1003 (1103)
.+.... ..+.+..|. +..++... .+.+..+. .++... ......++..+.|.+++..++....++.++
T Consensus 528 ~~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 595 (814)
T 3mkq_A 528 VLYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVY 595 (814)
T ss_dssp EEEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEE
T ss_pred eeeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEE
Confidence 111101 135566664 33333332 34444432 222221 112355677777889999999999999999
Q ss_pred EEeCCCc
Q 001310 1004 IHEASNL 1010 (1103)
Q Consensus 1004 vWd~~~~ 1010 (1103)
+|++...
T Consensus 596 ~~~l~~~ 602 (814)
T 3mkq_A 596 GYEISLE 602 (814)
T ss_dssp EEECCHH
T ss_pred EEEECcH
Confidence 9998643
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-46 Score=470.16 Aligned_cols=479 Identities=15% Similarity=0.185 Sum_probs=391.3
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|.+++|||||++||+++.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999986555 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEcc-CCCEEEEEec
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1103)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999965 6679999999999999999987 55567788899999999999 8889999876
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
++.|++||+.+++....+..+. ...+.+++|+| +++++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 6679999999888877777654 47899999999 99999999999999999999999999888664 46899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc-eeecc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA 706 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~ 706 (1103)
++|+|+++++++++.||.|++|+..+++....+..+...+.+++++ |++..+ ++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999987 455433 55556
Q ss_pred ccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceE-EEeecCCCccccccccccccCCeeecC
Q 001310 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1103)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1103)
++.+.+|++.. ....+.++|+|+.+++++.+... .++... ....|+.
T Consensus 292 ~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEEV 339 (814)
T ss_dssp TTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCCC
T ss_pred CCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------ccccccc
Confidence 67788887652 12346788999988887665321 010000 0001222
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001310 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1103)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1103)
..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 2222221111111236678899999999999999999999999987554332 35688999999 89999999999
Q ss_pred CeEEEEEcCCceeEEEeccCCCCEEEEEEccCC---CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEE
Q 001310 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1103)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1103)
|.|++|+ .+.+|...+.+++|+||| ++|++++.|+.|++||+.+++.. .....+ ...+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~-----~~~~~~------~~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLV-----RRIDVN------AKDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEE-----EEESSC------EEEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEE-----EEEecC------CCEE
Confidence 9999995 345688889999999998 68999999999999999987633 333333 2389
Q ss_pred EEcCCCCEEEEE------eCCeEEEEEC
Q 001310 943 QFHKDQTRFLLV------HETHLAIYEA 964 (1103)
Q Consensus 943 ~fs~dg~~l~~~------~d~~v~iwd~ 964 (1103)
+|||||++|+++ .++.+++|..
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999999997 6666666643
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-45 Score=420.32 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.2
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
..|.+|.++|++++|+|+++ ++++|+.|++|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 799999999999999999987765 7789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
|++||+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ .+++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999887655 6789999999999999999 8999999999999999999999999999999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC--------------------CCEEEEE
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~ 547 (1103)
|.+++++ +++.++++++.||+|++||+.+......+..|...|.+++|+|+ |.+|+++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999885 47789999999999999999999999999999999999999996 6789998
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++++..+..|. ..|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence 76 6679999999999999999988 899999999999999999999999999999999999998764 46999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEc
Q 001310 628 ICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
++|+|++.+|++|+.|+.|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9e-40 Score=363.60 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=266.5
Q ss_pred ccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456789999999999999999998 799999999999999999987765 55799999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCc-cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1103)
+|+|+|++||+|+.|+.|++|++.+++. ......+.+|...|.++.|++++. +++++.|++|++||+.+++++..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233446789999999999999875 889999999999999999999999
Q ss_pred ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1103)
.+|...|.+++|++ ++.++++++.||.|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6689999999999999999999999999999999999999999999999986 56699999
Q ss_pred CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
+.+++.+..+.... ....|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|++|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence 99998877765322 23579999999999999999999999999999999999888764 4699999999999999999
Q ss_pred CCCeEEEEE
Q 001310 642 NENRIKILE 650 (1103)
Q Consensus 642 ~dg~i~iw~ 650 (1103)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=363.98 Aligned_cols=299 Identities=17% Similarity=0.238 Sum_probs=268.9
Q ss_pred ccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
+....++|.+|.+.|++++|+||++ +||+|+.|++|+|||..+++.... +..|...|.++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~ 112 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMAC 112 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEE
Confidence 3466789999999999999999998 699999999999999999887654 45688899999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCc---cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
+|+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++++.
T Consensus 113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp EECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEE
Confidence 9999999999999999999999875421 223446778999999999999998 79999999999999999999999
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+.+|...|.++++++.+++.+|++|+.||.|++||+++++....+..|...|.+++|+|++.+|++++. ++.|++
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~l 266 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRL 266 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEE
Confidence 9999999999999998878899999999999999999999999999999999999999999999999986 567999
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 639 (1103)
||+++++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..| ...|.+++|+|+|++|++
T Consensus 267 wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 267 YDLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp EETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEE
T ss_pred EECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEE
Confidence 9999998877766433 2357899999999999999999999999999999999888766 456999999999999999
Q ss_pred EECCCeEEEEE
Q 001310 640 IANENRIKILE 650 (1103)
Q Consensus 640 ~~~dg~i~iw~ 650 (1103)
++.|++|++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-40 Score=360.62 Aligned_cols=295 Identities=15% Similarity=0.232 Sum_probs=266.2
Q ss_pred cceeEecccCCcCceEEEecCC----CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spd----g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
..+.+.+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 3455778899999999999985 44 799999999999999987654321 1277999999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987555 6778889999999999999 89999999999999999999999
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+..|...|.+++|+| ++.+|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 9999999999999954 7789999999999999999999988899999999999999999999999976 566999
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 639 (1103)
||+.+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..| ...|.+++|+|++++|++
T Consensus 233 wd~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred EECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEE
Confidence 9999999999999888 89999999999999999999999999999999999998866 346999999999999999
Q ss_pred EECCCeEEEEEcC
Q 001310 640 IANENRIKILETP 652 (1103)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1103)
++.|+.|++||.+
T Consensus 308 ~~~d~~i~vwd~p 320 (321)
T 3ow8_A 308 VGDDQEIHIYDCP 320 (321)
T ss_dssp EETTCCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 9999999999964
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-39 Score=354.21 Aligned_cols=293 Identities=18% Similarity=0.310 Sum_probs=258.1
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
...++|.+|.+.|++++|||||+ +|++|+.||+|+|||++++..+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 689999999999999999987765 6679999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeec
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1103)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 6889999999999999999 8999999999999999987 45578899
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-CCCccEEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1103)
|...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999763 45799999999999999998877666554 4556888899987 7789999986 6679999
Q ss_pred eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001310 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~--~l~ 638 (1103)
|+.+++.+..+.+|. ..|.+++|+|+++.|++|+.||+|++||..+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999987653 4588999999875 577
Q ss_pred EEECCCeEEEEEcCC
Q 001310 639 VIANENRIKILETPE 653 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1103)
+|+.+| +.+|++..
T Consensus 289 sg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEETTE-EEEEECC-
T ss_pred EecCCc-eEEEEecc
Confidence 777655 77777654
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.2e-39 Score=351.68 Aligned_cols=301 Identities=19% Similarity=0.238 Sum_probs=259.2
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
.+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 4567899999999999999977448999999999999998754322110 11227789999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
+|||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987554 6889999999999999999 89999999999999975 6778889999
Q ss_pred CCceEEEEeeecC----CccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1103)
...|.++++.+.. ++..+++++.|+.|++||+...+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999998888889999999999999999999999986 6779999
Q ss_pred eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC------CCCCCceEEEecCC
Q 001310 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~g 634 (1103)
|+.+++.+..+..+ ..|.+++|+|++.++++++. +.+++|++..+..+..+..+. +...+.+++|+|||
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999998888764 47999999999999888775 459999999888877765331 12357799999999
Q ss_pred CEEEEEECCCeEEEEEcCCC
Q 001310 635 TLLAVIANENRIKILETPES 654 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~ 654 (1103)
++|++|+.|+.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-39 Score=367.02 Aligned_cols=306 Identities=17% Similarity=0.256 Sum_probs=265.7
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
..+.++|.+|.+.|++++|+|+|+ +|++|+.|++|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 457789999999999999999998 699999999999999999987765 667999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976421 1223357799999999999998654 69999999999999999999998
Q ss_pred Ee-----ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 480 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
.+ .+|...|.++++++. ++.++++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 87 679999999998643 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceeEEEEeCCCCeeEEEEeccccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC--CCCCCCCce
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 627 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 627 (1103)
++.|++||+.+++.+..+..+... ...+.+++|+|+++++++|+.||.|++||...++.+..+.. ..+...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 667999999999998888765411 13488999999999999999999999999999988877732 234567999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESN 655 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~ 655 (1103)
++|+|+|++|++|+.|++|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999988653
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-39 Score=360.32 Aligned_cols=319 Identities=16% Similarity=0.206 Sum_probs=232.7
Q ss_pred eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCe
Q 001310 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1103)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 781 (1103)
+.++.+.....|++....+ ..|...|.+++|+|||++|++++.+. +++|| ..++
T Consensus 20 ~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd---------------~~v~ 73 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWG---------------GSIW 73 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCC---------------EEEE
T ss_pred EecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-Ccccc---------------CeEE
Confidence 4444456778888753222 24888999999999999999998853 23443 1234
Q ss_pred eecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeE----EecCCCCCeeEEEEcCCCCC
Q 001310 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDNN 857 (1103)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~~ 857 (1103)
+|+..++...........+|...|.+++|+|++++++++.||+|++||+.+++... ...+|...|++++|+| +++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 152 (357)
T 4g56_B 74 VFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGT 152 (357)
T ss_dssp EESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSS
T ss_pred EEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCC
Confidence 44444443222222222248889999999999998888789999999999876543 3447899999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1103)
+|++|+.||+|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++...... ...+.
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~--- 226 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCASD--- 226 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTCC---
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---ecccc---
Confidence 999999999999999999999999999999999999999874 78999999999999999876433211 11122
Q ss_pred CCceEEEEcCCC-CEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCceeE
Q 001310 937 PSETHIQFHKDQ-TRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 937 ~~v~~l~fs~dg-~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
..+.+++|+|++ .+|+++ .|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.|++|+|||+.+++.+
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 368999999985 567775 789999999999998877 66899999999999998 57999999999999999999876
Q ss_pred EeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310 1014 CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
..+ +|...|. +++|+|.++.+|++++.||+|++|++...+.
T Consensus 306 ~~~--------------------~H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 306 RDL--------------------SHRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEC--------------------CCSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEC--------------------CCCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 433 3667776 6789996699999999999999999965443
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-38 Score=362.61 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=266.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.++|++++|+|++.+||+|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56899999999999999999999999999999999987655 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+.+++++.++.+|...|.+++|++ ++.+|++++.|++|++||+.++.....+..|...+.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCe
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|++|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 5669999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1103)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1103)
++..+..|. ..|.+++|+|+|++|++++.|+.|++||..+++.+..+.+|...|++++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999988764 468999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCccceeeccccccccccc
Q 001310 692 EDPKEDVKPEISVEAENKSEVEKP 715 (1103)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~~w~~ 715 (1103)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 78889999999999999985
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.1e-38 Score=347.82 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=263.0
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|.+++|+||+++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999886554 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
+.++ +....+.+|.+.|.++.|.+. + .+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 355678899999999999653 3 59999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 5669999999999999999888 8999999999999999999999999999999998888765554456899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
++|+|+|++|++|+.|+.|++||..+++.+..+.+|...|.+++++ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999997 789999999999
Q ss_pred ccccccc
Q 001310 708 NKSEVEK 714 (1103)
Q Consensus 708 ~~i~~w~ 714 (1103)
+.|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=350.05 Aligned_cols=307 Identities=15% Similarity=0.229 Sum_probs=250.6
Q ss_pred cceeEecccCCc-CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 324 KTVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 324 ~~~~~~l~~h~~-~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
..++++|.+|.+ +|++++|||||+ +||+|+.|++|+|||+.++...... ....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEE
Confidence 357788999988 999999999998 6999999999999999887543221 1246899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc---eeE
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTY 479 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~ 479 (1103)
+|+|||++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23346889999999999999999 89999999999999998764 466
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
.+.+|...|.+++|+| ++.+|++++.|++|++||...... ...+..|...|.+++|+|+|++|++++. ++.|
T Consensus 145 ~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 7889999999999965 667999999999999999987653 4577889999999999999999999986 6679
Q ss_pred EEEeCCCC---------------eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----E---EE
Q 001310 558 VEWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL----L---TT 615 (1103)
Q Consensus 558 ~iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~---~~ 615 (1103)
++||.... +.+..+.+. |...|.+++|+|++..+++++.|+.|++|+...+.. . ..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 99996321 223344442 247899999999999999999999999999875421 1 11
Q ss_pred EcCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeE
Q 001310 616 IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1103)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1103)
.....+...|.+++|+|++ .+|++++.||.|++|+..+++...
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1122345679999999987 599999999999999999876543
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=345.54 Aligned_cols=289 Identities=16% Similarity=0.241 Sum_probs=264.0
Q ss_pred ccCCCccEEEEEECCC----CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6689999999999985 67999999999999999987643 22336889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
++||+.+++++..+..|...+.+++|+| ++.+|++++.||.|++|+++++.....+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999954 77899999999999999999999988888888999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..| ...|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEE
Confidence 86 5669999999999999999887 89999999999999999999999999999999999888866 446899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+ |+++.+++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999997 788899999999
Q ss_pred ccccccccc
Q 001310 708 NKSEVEKPL 716 (1103)
Q Consensus 708 ~~i~~w~~~ 716 (1103)
+.|++||..
T Consensus 312 ~~i~vwd~p 320 (321)
T 3ow8_A 312 QEIHIYDCP 320 (321)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999963
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.3e-37 Score=338.24 Aligned_cols=296 Identities=18% Similarity=0.307 Sum_probs=262.1
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
.....++.+|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++.... +.+|...|.+++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~ 72 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVA 72 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEE
Confidence 345678899999999999999998 689999999999999999887654 678999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
|+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++++..+..
T Consensus 73 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 147 (312)
T 4ery_A 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPA 147 (312)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EcCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecC
Confidence 99999999999999999999999987555 6789999999999999999 899999999999999999999999999
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
|..+|.+++|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|++++|++++. ++.|++||+
T Consensus 148 ~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~ 221 (312)
T 4ery_A 148 HSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDY 221 (312)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEET
T ss_pred CCCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEEC
Confidence 999999999965 67899999999999999999888776654 45568999999999999999876 567999999
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA- 641 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~- 641 (1103)
.+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAAL 299 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEEC
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEc
Confidence 9999999998877333334444455778899999999999999999999999998764 4689999999999999997
Q ss_pred -CCCeEEEEEcC
Q 001310 642 -NENRIKILETP 652 (1103)
Q Consensus 642 -~dg~i~iw~~~ 652 (1103)
.|+.|++|+.+
T Consensus 300 ~~d~~i~~W~~d 311 (312)
T 4ery_A 300 ENDKTIKLWKSD 311 (312)
T ss_dssp TTTCCEEEEECC
T ss_pred cCCccEEEecCC
Confidence 69999999864
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=348.46 Aligned_cols=295 Identities=13% Similarity=0.161 Sum_probs=230.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
+...|.+++|+|||+.|++++ |+++++|+... .+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 556799999999999777665 77888887321 11211110000000000012567899999999
Q ss_pred CCCEEEEEcCCeEEEEEcCCceeeEE----ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC
Q 001310 813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 888 (1103)
Q Consensus 813 d~~~l~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 888 (1103)
|+.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655555589999999998876544 447999999999999 8999999999999999999999999999999999
Q ss_pred EEEEEEccCC-CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-CCEEEEE-eCCeEEEEECC
Q 001310 889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAE 965 (1103)
Q Consensus 889 V~~l~~s~dg-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~~-~d~~v~iwd~~ 965 (1103)
|.+++|+|++ .+|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|+++ .|+.|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999998 5789999999999999998764332 111 1111 25889999995 5677775 78999999999
Q ss_pred CceEEEEeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee
Q 001310 966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP 1044 (1103)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1044 (1103)
+++++.. +.+|...|++++|+||+ ++|++|+.|++|+|||+.++++.. +. +|...|.
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------------------~H~~~V~- 303 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------------------AHRDFVR- 303 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------------------CCSSCEE-
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------------------CCCCCEE-
Confidence 9999887 56899999999999998 579999999999999999987652 22 5777786
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 1045 HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 1045 ~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
+++|+|++..+|++++.||+|++|++..
T Consensus 304 -~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 304 -DATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -EEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred -EEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 6789999667889999999999999953
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.7e-38 Score=351.45 Aligned_cols=294 Identities=13% Similarity=0.148 Sum_probs=238.8
Q ss_pred ccCCcCceEEEecCCCceEEEEEcC------CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..|...|++++|||||+ +||+|+. |+.|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999998 6889887 67889998887765432111 13468899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcccc-ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
+|++++| +++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++|+.|++|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 567899999999998865432 224568999999999999999 899999999999999999999999999
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe--cCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEE
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iw 560 (1103)
|...|.+++|++..+ .++++++.||+|++||+++++....+ ..+...+.+++|+|++ .+|++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999976432 47899999999999999988766544 3456679999999975 56777765 5669999
Q ss_pred eCCCCeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEE
Q 001310 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~ 638 (1103)
|+.+++.+..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+. +...|.+++|+| ++++|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEE
Confidence 999999999999888 899999999987 578899999999999999998887652 345799999998 899999
Q ss_pred EEECCCeEEEEEcCCC
Q 001310 639 VIANENRIKILETPES 654 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~ 654 (1103)
+++.|++|++|++...
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999764
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=344.08 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=238.8
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccc-cceeeeeccCCCccEEEEEECCCCCE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGSL 410 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~~spdg~~ 410 (1103)
.|...|.+++|||||+ +|++++ |+++++||... .+|+..... ..........|...|.+++|+||+ +
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 4667899999999998 677776 77888887321 111110000 000001122366789999999985 6
Q ss_pred EEEEeCCCeEEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310 411 LGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1103)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1103)
|++|+.||+|+|||+.+++.+... ..+.+|...|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998765432 24568999999999999999 899999999999999999999999999999999
Q ss_pred EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--CCCccEEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
+++|++.. ..++++++.|++|++||+++++....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 99997643 2588999999999999999988877664 34557899999995 567777765 6679999999999
Q ss_pred eEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCC
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN 644 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg 644 (1103)
.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.+++... +..| ...|.+++|+|+++ +|++++.|+
T Consensus 249 ~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 249 CVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCC
Confidence 999999988 899999999998 578899999999999999988654 4444 55799999999886 677999999
Q ss_pred eEEEEEcCCC
Q 001310 645 RIKILETPES 654 (1103)
Q Consensus 645 ~i~iw~~~~~ 654 (1103)
+|++|++.+.
T Consensus 323 ~v~~w~v~~~ 332 (344)
T 4gqb_B 323 QVVHHVVPTE 332 (344)
T ss_dssp CEEEEECCC-
T ss_pred eEEEEECCCC
Confidence 9999999865
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=339.58 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.1
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. .+++++.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876544 5678889999999999999 899999999999999
Q ss_pred CCCC------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc--CCCE
Q 001310 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1103)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~ 543 (1103)
+... .....+.+|...|.+++|++ ++..|++++.|++|++||+.+++....+..|...+.+++|+| +|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34567789999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
|++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++.+++++.|++|++||+..++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 5669999999999999998887 899999999999999999999999999999998888776655445
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
.+.+++|+|+|++|++++.|+.|++||+.++..+..+.+|...|.+++|+ |+|+++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999997 78999999
Q ss_pred ecccccccccc
Q 001310 704 VEAENKSEVEK 714 (1103)
Q Consensus 704 ~~~d~~i~~w~ 714 (1103)
++.|++|++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=355.72 Aligned_cols=334 Identities=13% Similarity=0.180 Sum_probs=281.6
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEEC----CCCCe------eeeeeeeEeecccccccee-eeeccCCCccEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQK------LFIRNFKVWDIGACSMLFK-TALVRDPGVSVN 400 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~ 400 (1103)
.|.+.|++++|+|+|+.+||+|+.|+.|++||+ .+++. ...... ++. .....+|.+.|.
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKTTNQVT 112 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------CBCEE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCCCCceE
Confidence 455899999999999845899999999999999 88873 221100 000 001223788999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
+++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999 4444333 6789999999999999999 899999999999999999999999
Q ss_pred eecCCCc---------------eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310 481 FEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 481 ~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1103)
+..+... +.+++|++. ..+++++.||.|++||+.+.+....+..+...+.+++|+|++++|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9888777 888888753 3699999999999999999988888889999999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
+++. ++.|++||+.+++.+..+..|. ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+. ..+
T Consensus 264 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i 333 (425)
T 1r5m_A 264 SASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPI 333 (425)
T ss_dssp EEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred EEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccE
Confidence 9986 5569999999999988888777 899999999999 99999999999999999999998888663 468
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCC--------------------eeEecccccc--ceeeeEEecCCceeeeec
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGI 683 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 683 (1103)
.+++|+|++++|++++.||.|++|++.++. .+..+..+.. .+.+++|+
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------- 403 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN---------- 403 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------
Confidence 999999999999999999999999999877 7788888866 88888886
Q ss_pred cCCceEecCCCCCCCccceeecccccccccccc
Q 001310 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
|+++++++++.|+.|++|++.
T Consensus 404 ------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 ------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------TTSSEEEEEESSSCCEEEECC
T ss_pred ------------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999975
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.2e-37 Score=339.96 Aligned_cols=302 Identities=17% Similarity=0.276 Sum_probs=245.0
Q ss_pred cceeEecccCCcCceEEEe-----cC-CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
..+..+|.+|++.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCC
Confidence 4567889999999999999 77 887 7999999999999999765432100 001123789999
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+. +..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GEC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCc
Confidence 99999999999999999999999999999987554 6789999999999999999 89999999999999987 444
Q ss_pred eEEee---cCCCceEEEEeeecCC--------ccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 478 ~~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
..... +|...|.+++|++... +.++++++.||.|++|| ........+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEE
Confidence 44443 7889999999976532 26899999999999999 445566678889999999999999999999
Q ss_pred EecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcCC----
Q 001310 547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG---- 619 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~---- 619 (1103)
++. ++.|++||+.. ......+. +. ..|.+++|+|++.+++ ++.|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 66799999944 44444443 22 5699999999988765 4567889999998876543 33311
Q ss_pred -----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 620 -----~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33456889999999999999999999999998653
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=335.64 Aligned_cols=299 Identities=16% Similarity=0.176 Sum_probs=234.5
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
..++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++.......+ ...+|...|.+++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~ 65 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVA 65 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEE
Confidence 3467889999999999999998 689999999999999987642211000 0234999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCC----ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC----C
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----G 475 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~ 475 (1103)
|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1223446789999999999999999 899999999999999943 2
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC--CeeEEecCCCccEEEEEEccC--CCEEEEEecCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSK 551 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~ 551 (1103)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... +....+..|...|.+++|+|+ +.+|++++.
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-- 219 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-- 219 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--
Confidence 56778899999999999965 6679999999999999998766 456678889999999999998 778998876
Q ss_pred CCceeEEEEeCCCC--------eeEEEEec-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCC
Q 001310 552 EGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGG 620 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~ 620 (1103)
++.|++||+.++ .....+.+ |. ..|.+++|++++ .+++++.||.|++||..+++. ..... ..
T Consensus 220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~ 292 (330)
T 2hes_X 220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LC 292 (330)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CT
T ss_pred --CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cc
Confidence 667999998754 33344443 44 889999999765 899999999999999988742 32321 22
Q ss_pred CCC-CCceEEEec--CCCEEEEEECCCeEEEEEcCC
Q 001310 621 GLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 621 ~~~-~v~~v~~s~--~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
+.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 233 689999999 789999999999999999864
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-36 Score=343.17 Aligned_cols=307 Identities=15% Similarity=0.238 Sum_probs=248.9
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
.+.+ +|.+.|.+++|||||+ +||+|+ +++++||++.+|+.+.......-. ......+.......+...|.+++|+|
T Consensus 58 ~~~~-~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 58 HKSL-DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEE-ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred EEec-CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 3444 6999999999999999 688876 689999999999877542110000 00000011111123445699999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+.++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999886544 6889999999999999999 89999999999999999999988876 567
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-------cCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+.++++++. ++.++++++.||.|++||+.++.....+ ..|...|.+++|+|+|++|++++. ++.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7899998653 6789999999999999999988776655 467789999999999999999986 667999
Q ss_pred EeCCCC------------eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 560 WNESEG------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 560 wd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
||+.+. .....+.+|. ..|.+++|+|++.+|++|+.|+.|++||..+++.+..+..|. ..|.+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~ 357 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVIS 357 (393)
T ss_dssp EEC---------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEE
Confidence 999763 3445666776 889999999999999999999999999999999999988764 46899
Q ss_pred EEEec------CCCEEEEEECCCeEEEEEcCC
Q 001310 628 ICFNK------NGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 628 v~~s~------~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
++|++ ++++|++|+.|++|++|+...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99886 688999999999999999764
No 34
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.1e-35 Score=378.68 Aligned_cols=523 Identities=13% Similarity=0.054 Sum_probs=378.3
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
+.+.+.+.+|||+ + +|.++. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3567899999974 3 444443 689999998886543 567999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCCccccceEeccccccE-------EEEEEecCCCceEEEEEcCC------CceEEEeCC
Q 001310 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1103)
Q Consensus 413 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~ 473 (1103)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988752 2577888888 9999999998 67777754 357788887
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEEC------------CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1103)
+++... +..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 33332 33556654 5 7887753 345677765444555566788889999999988
Q ss_pred CEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 620 (1103)
..++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++++. ++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence 44444432 33355555432 33334444443 355679999999988874 8999999995443 43444321
Q ss_pred ---------CCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1103)
Q Consensus 621 ---------~~~~v~~v~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 690 (1103)
+...+..++|+ |||+++++++ ++.+.+|+..++.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 6889999877553221 10
Q ss_pred cCCCCCCCccceeeccccccccccccccCCccceeeeccCccccc-cEEEEEEecCCcEEEEeecCceEE-EeecCCCcc
Q 001310 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 768 (1103)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~i~-vw~~~~~~~ 768 (1103)
.+.. .+..++|+ ||+.++.++.++.+. +|++...
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-- 369 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-- 369 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--
Confidence 1233 57788899 999898888877666 6665432
Q ss_pred ccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCee
Q 001310 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 847 (1103)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 847 (1103)
. ... +. ++...+..++|+|||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 370 --------------------~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 370 --------------------K-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp --------------------C-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred --------------------C-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 1 111 11 3677899999999999999887 68999999999988888778888999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310 848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~ 917 (1103)
+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887644 99999999887 677888988999999999999999999988888887654
Q ss_pred Cceeee-----eee--e---------------------cCCCc-------ccCCCCceEEEEcCCCCEEEE---------
Q 001310 918 WGIQTC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKDQTRFLL--------- 953 (1103)
Q Consensus 918 ~~~~~~-----~~~--~---------------------~~~~~-------~~~~~~v~~l~fs~dg~~l~~--------- 953 (1103)
...... ..+ . ...+. ....+.+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 322000 000 0 00010 011236789999999998875
Q ss_pred ---E--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 954 ---~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
+ ....|++||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 245799999998876433 2 568899999999999998766 89999998876
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-36 Score=330.65 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=241.8
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|.+++|+||+++||+++.||+|++||+.++..+. .+.+|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999986554 6788999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEcc-CCCEEEEEec
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1103)
+.+++++..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 667999999999999999988744 457788999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1103)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 6679999998887766665433 36789999986 67899999999999999999999999998774 46899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEec
Q 001310 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1103)
Q Consensus 628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 674 (1103)
++|+|++++|++++.||+|++||..+++....+..+...+.+++++|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999884
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.7e-37 Score=349.34 Aligned_cols=291 Identities=15% Similarity=0.160 Sum_probs=256.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 77999999999999999999999999999999999886554 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-----cCCCccEEEEEEcc
Q 001310 472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1103)
Q Consensus 472 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1103)
+.+.. ....+.+|.+.|.++.|.+. ++..|++++.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87542 34567899999999999764 3457999999999999999998887766 56778899999987
Q ss_pred -CCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310 540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
+++++++++. ++.|++||++ .++.+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 5669999998 557788888887 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec----cccccceeeeEEecCCceeeeeccCCce
Q 001310 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1103)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 688 (1103)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++++
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234889999999999999999999999999988877666 6788899999987
Q ss_pred EecCCCCCCCccceeeccccccccccccc
Q 001310 689 SVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
|+|.++++++.|++|++|++..
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECCS
T ss_pred -------CCCCEEEEeeCCCCEEEEecCC
Confidence 7899999999999999999763
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-36 Score=348.43 Aligned_cols=357 Identities=10% Similarity=0.166 Sum_probs=270.7
Q ss_pred eEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCe------eEEEEcCCC----
Q 001310 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM----NKVQ------LLTTIDAGG---- 620 (1103)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~----~~~~------~~~~~~~~~---- 620 (1103)
.+.+|+............|. ..|.+++|+|+++ +|++++.||.|++|++ .+++ ....+....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKL---DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp --------CCCEECEEEEEC---SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred ccccccchhhhhheeeeecc---CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 35677776655544444444 7899999999999 9999999999999999 8887 455444311
Q ss_pred ----CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCC
Q 001310 621 ----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 696 (1103)
Q Consensus 621 ----~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 696 (1103)
+...|.+++|+|++++|++++.||.|++|+ .++..+..+..
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~---------------------------------- 147 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF---------------------------------- 147 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC----------------------------------
T ss_pred cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC----------------------------------
Confidence 234689999999999999999999999999 44433333322
Q ss_pred CCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccc
Q 001310 697 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776 (1103)
Q Consensus 697 d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 776 (1103)
|...|.+++|+|+++.+++++.+|.+++|++......
T Consensus 148 ------------------------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------- 184 (425)
T 1r5m_A 148 ------------------------------------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM------- 184 (425)
T ss_dssp ------------------------------------CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE-------
T ss_pred ------------------------------------CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-------
Confidence 5567788888888888888888888888887554320
Q ss_pred ccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCC
Q 001310 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856 (1103)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 856 (1103)
..+................+....+.+++|++++.+++.+.++.|++||+.+++.+..+..|...|.+++|+| ++
T Consensus 185 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~ 259 (425)
T 1r5m_A 185 ----QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TN 259 (425)
T ss_dssp ----EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TT
T ss_pred ----EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CC
Confidence 0111000000000000000123338899999998766666689999999999999999999999999999999 89
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1103)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1103)
++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+.+++... ....+.
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~--- 330 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA-----LSIVDG--- 330 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE-----EEECTT---
T ss_pred CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE-----ecccCC---
Confidence 999999999999999999999999999999999999999999 99999999999999999876433 222333
Q ss_pred CCceEEEEcCCCCEEEEE-eCCeEEEEECCCce--------------------EEEEeeCCCCc--CeEEEEEccCCCEE
Q 001310 937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEELT--------------------CLKQWFPISSV--PISQATFSCDCRMV 993 (1103)
Q Consensus 937 ~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~--------------------~~~~~~~~h~~--~v~~l~fs~dg~~l 993 (1103)
..+.+++|+|++++|+++ .|+.|++||+.+++ .+.. +.+|.. .|.+++|+||+++|
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS-YQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE-ECCTTCCCCEEEEEECTTSSEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh-hcCcccCCceEEEEccCCCceE
Confidence 279999999999999995 78999999999888 6766 566755 99999999999999
Q ss_pred EEEecCCcEEEEeCC
Q 001310 994 FTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 994 ~t~~~dg~v~vWd~~ 1008 (1103)
++++.||.|++||++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.5e-36 Score=328.02 Aligned_cols=297 Identities=21% Similarity=0.276 Sum_probs=253.1
Q ss_pred eccCCCccEEEEEECCCC-CEEEEEeCCCeEEEEEecCCCc--cccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ +|++++.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 378999999999999965 8999999999999999976432 123446889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC------C
Q 001310 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 541 (1103)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d------g 541 (1103)
++||+.+++++..+.+|...|.+++|++ ++.+|++++.|++|++||++. .....+..|...+.+++++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999965 668999999999999999964 566678888999999999985 4
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1103)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 237 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-- 237 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence 47888876 5669999999999999998888 89999999999999999999999999999999999888765
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1103)
Q Consensus 622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1103)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 358999999999999988865 5999998876544433211000
Q ss_pred eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~ 765 (1103)
....+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999999643
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.9e-36 Score=333.54 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=273.6
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
|.++|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 577777767666665443322211 347999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccccceEec--cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc--eeEEeecCCCce
Q 001310 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v 488 (1103)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655554554 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
.+++|++ ++.++++++.||.|++||+.+.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6789999999999999999999888889889999999999999999999976 667999999999988
Q ss_pred EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1103)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 648 (1103)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 689999999999999999999999999999887653 3333 456899999999999999999999999
Q ss_pred EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1103)
Q Consensus 649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1103)
|++.+++.+...
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999877544211
Q ss_pred cCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1103)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~ 763 (1103)
.+...|.+++|+|+++.+++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14466788889999998999999999999885
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=356.35 Aligned_cols=354 Identities=13% Similarity=0.185 Sum_probs=274.5
Q ss_pred CcCceEEEecCCCceEEEEE----------cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasg----------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
...|.+++|||+|+.++++| +.|+.|+|||+.+++.... .....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEEE
Confidence 34899999999998689999 8899999999998763211 00235889999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCc-cccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCc-----
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS----- 476 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~----- 476 (1103)
|+|++++||+++.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1233467899999999999998 66 79999999999999999887
Q ss_pred -eeEE---eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------CccEEEEEEccCC-CEEE
Q 001310 477 -RTYS---FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLF 545 (1103)
Q Consensus 477 -~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~ 545 (1103)
.... +.+|...|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 3333 4679999999999764 2579999999999999999998888888776 6789999999997 5788
Q ss_pred EEecCCCCceeEEEEeCCCC-eeEEEEe-cccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC
Q 001310 546 SCGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1103)
+++.++ .++.|++||+.++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..|.
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-- 305 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG-- 305 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--
Confidence 776532 1237999999986 5666666 666 8999999999 89999999999999999999999999988764
Q ss_pred CCCceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeEeccc--cccceeeeEEecCCceee---------------eecc
Q 001310 623 PENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIA 684 (1103)
Q Consensus 623 ~~v~~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---------------~~~~ 684 (1103)
..|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.+...+ ....
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence 468999999999 8999999999999999987654332211 000000011111100000 0001
Q ss_pred CCceEecCCCCCCCccceeeccccccccccccc
Q 001310 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
...++| +|||+++++++.|+.|++|++.+
T Consensus 386 ~~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 386 SPAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 113344 68999999999999999999874
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.5e-36 Score=332.78 Aligned_cols=303 Identities=18% Similarity=0.261 Sum_probs=260.4
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
.+..+|+||++.|++|+|+|++..+||+|+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4556899999999999999985348999999999999999887644321 12237889999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-EEeec
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~ 483 (1103)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998875443 5567888899999999999 7999999999999998766544 44578
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
|...+..+++.+.....++++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 6679999999
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-------CCCCCCceEEEecCCCE
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~ 636 (1103)
+++.+..+..+ ..+.++.|+|++. +++++.|+.|++||++++..+..+..+ .+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999888764 4799999999865 566777999999999998887766532 34557899999999999
Q ss_pred EEEEECCCeEEEEEcCCCC
Q 001310 637 LAVIANENRIKILETPESN 655 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~ 655 (1103)
|++|+.||.|++|++.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998874
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=333.56 Aligned_cols=302 Identities=16% Similarity=0.201 Sum_probs=241.6
Q ss_pred cccc-cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310 732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1103)
Q Consensus 732 ~~~~-~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 810 (1103)
+|.. .|..++|+|+|++|++++.|+.|++|++..... .....+ ..+|...|.+++|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW 69 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence 3666 899999999999999999999999999754321 000000 1258999999999
Q ss_pred ecCCCEEEEEc-CCeEEEEEcCCc--eeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEecc
Q 001310 811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 884 (1103)
Q Consensus 811 s~d~~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 884 (1103)
+|++++|++++ |+++++||..++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999998 899999999866 46788999999999999999 8999999999999999999876 45677889
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEE
Q 001310 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 963 (1103)
Q Consensus 885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd 963 (1103)
|...|.+++|+|++++|++++.|++|++||+..++.. +.....+|.. .|.+++|+|+|++|+++ .|++|++||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 9999999999999999999999999999999876532 2344556654 89999999999999995 899999999
Q ss_pred CCC---------------ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCC
Q 001310 964 AEE---------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSH 1028 (1103)
Q Consensus 964 ~~~---------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1103)
... .+++..+...|...|.+++|++++..|++++.|+.|++|+..++....... +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~------- 292 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT---F------- 292 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC---E-------
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee---E-------
Confidence 632 234455444589999999999999999999999999999987653110000 0
Q ss_pred CceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310 1029 DKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus 1029 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
........+|...|. +++|+|+++.+|++|+.||+|++|++....
T Consensus 293 ~~~~~~~~~h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEETTSSSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEEeeecccccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 000001136777786 678999866799999999999999995443
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-35 Score=324.50 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=260.5
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+.+|...|.+++|+|++++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999886544 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
|+.+++++..+.+|...|.+++|++ ++.++++++.||.|++||+.+++....+..+..++.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6689999999999999999999988899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 5669999999998887775443 46899999999999999999999999999999999999887754333334444
Q ss_pred e-cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec--cc
Q 001310 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 707 (1103)
Q Consensus 631 s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d 707 (1103)
+ +++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |++..+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678999999999999999999999999999999999999997 6777788776 68
Q ss_pred ccccccccc
Q 001310 708 NKSEVEKPL 716 (1103)
Q Consensus 708 ~~i~~w~~~ 716 (1103)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999864
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=322.78 Aligned_cols=306 Identities=15% Similarity=0.177 Sum_probs=229.7
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+..+ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888888 89999999987 8999999999999999875 4455553322456799999999999999999
Q ss_pred CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCc
Q 001310 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1103)
Q Consensus 642 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~ 721 (1103)
.|++|++|+........ .
T Consensus 78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------- 95 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT-F------------------------------------------------------------- 95 (330)
T ss_dssp TTSCEEEEEC--------C-------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc-c-------------------------------------------------------------
Confidence 99999999975321000 0
Q ss_pred cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC
Q 001310 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801 (1103)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1103)
..+ . +.. + .+|
T Consensus 96 -----------------------~~~-~--------~~~-----------------------------------~--~~h 106 (330)
T 2hes_X 96 -----------------------EMD-L--------LAI-----------------------------------I--EGH 106 (330)
T ss_dssp -----------------------CCE-E--------EEE-----------------------------------E--C--
T ss_pred -----------------------cce-e--------EEE-----------------------------------E--cCC
Confidence 000 0 000 0 036
Q ss_pred CCCeeEEEEecCCCEEEEEc-CCeEEEEEcCC----ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001310 802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1103)
...|.+++|+|++++|++++ |++|++||+.. .+.+..+.+|...|++++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 67777777777777777776 67788888732 356677889999999999999 8999999999999999998876
Q ss_pred --eeEEEeccCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCce---eeeeeeecCCC-cccCCCCceEEEEcCCC
Q 001310 877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 877 --~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~fs~dg 948 (1103)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ..........+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678899999999999999999 77999999999999999976421 11122333332 44 379999999877
Q ss_pred CEEEEEeCCeEEEEECCCce--EEEEeeCCCCc-CeEEEEEcc--CCCEEEEEecCCcEEEEeCCC
Q 001310 949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 949 ~~l~~~~d~~v~iwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
.++..+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++|+.||+|++||+++
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 44444689999999998874 34444567876 899999999 789999999999999999865
No 45
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=7e-34 Score=364.57 Aligned_cols=529 Identities=10% Similarity=0.026 Sum_probs=372.7
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC------CceE
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIK 468 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~ 468 (1103)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|+.++.+ ..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999995 58888765 68999999887532 5678999999999999999 56665432 4799
Q ss_pred EEeCCCCceeEEeecCCCce-------EEEEeeecCCccEEEEEECC------CeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1103)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++.++.... +... ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Cccee
Confidence 99988876 67788888888 8888865 66677777754 357777776655432 2222 23456
Q ss_pred EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
+|+| | ++++++.+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12224444332223445556666 88999999988 56667778899999976
Q ss_pred CC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1103)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 686 (1103)
.. +.....+..+. .+...+|+|||++++.+. ++.|.+|+..... +..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc--------------------
Confidence 53 44445554443 367789999999998885 7899999984332 2222110000
Q ss_pred ceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe-cCCcEEEEeecCceEEEeecCC
Q 001310 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~vw~~~~ 765 (1103)
.. ... ..+...+.+++|+ |||+.+++++ ++.+.+|++..
T Consensus 287 ---------------------~~-------------~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 287 ---------------------SP-------------EDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ---------------------BC-------------CSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ---------------------cc-------------ccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 00 000 0144567889999 9999888887 77888887543
Q ss_pred CccccccccccccCCeeecCCCCCceeeccCCCCCCCC-CeeEEEEecCCCEEEEEcC-CeEE-EEEcCCceeeEEecCC
Q 001310 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 842 (1103)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~~~~d-g~i~-iwd~~~~~~~~~~~~~ 842 (1103)
.. ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++.. .+..+
T Consensus 327 ~~-----------------------~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~ 377 (1045)
T 1k32_A 327 TY-----------------------VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 377 (1045)
T ss_dssp SB-----------------------EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred Cc-----------------------eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence 21 111 11 2555 78899999 9999998875 6687 8899876654 44477
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC----------eEEE
Q 001310 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 912 (1103)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg----------~I~i 912 (1103)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 899999999999999999999998888878999999999999999999887654 8999
Q ss_pred EEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceE----------------------
Q 001310 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC---------------------- 969 (1103)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~---------------------- 969 (1103)
||+.+++.. ....+.. .+..++|+|||++|+.+ .++...+|+......
T Consensus 457 ~d~~~g~~~------~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKIF------AATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEEE------ECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcEE------EeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 999986621 1222222 57789999999999885 445555555432211
Q ss_pred --------------------EEEeeCCCCcCeEEEEEccCCCEEEE-------------EecCCcEEEEeCCCceeEEee
Q 001310 970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus 970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
....+..|...+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 00112346678899999999988875 123457889999888753221
Q ss_pred ccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310 1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
. .+ ..++++|| |..|++++.+ .|++|++....
T Consensus 608 ~-----------------------~v--~~~~~S~D-G~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N-----------------------NL--TDLRLSAD-RKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E-----------------------EE--EEEEECTT-SCEEEEEETT-SCEEEEESSCT
T ss_pred c-----------------------Cc--ceEEECCC-CCEEEEEcCC-cEEEEeCccCc
Confidence 1 13 35689999 8888888766 79999995443
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-35 Score=332.95 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=248.3
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEecccc------------------ccEEEEEEecCCCc
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~v~~~~~s~d~~~ 455 (1103)
+|...|.+++|||||++||+|+ ++++++|++.+++.+. .+.+|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987554 344432 2499999999999
Q ss_pred eEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1103)
Q Consensus 456 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1103)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.+++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66899999999999999999888776665 44578999
Q ss_pred EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 610 (1103)
+|+| +++++++++. ++.|++||+.+++.+..+... ..|...|.+++|+|++++|++++.|++|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 566999999999888776321 123389999999999999999999999999999764
Q ss_pred e------------eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310 611 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1103)
Q Consensus 611 ~------------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 678 (1103)
. +...+..| ...|.+++|+|++++|++++.|+.|++||..+++.+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 3 33445444 456899999999999999999999999999999999999999999999999864322
Q ss_pred eeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
.|++..+++++.|++|++|++..
T Consensus 367 ----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 367 ----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----------------CCCCCEEEEECCCCcEEECcccc
Confidence 47899999999999999999763
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-35 Score=340.79 Aligned_cols=346 Identities=12% Similarity=0.115 Sum_probs=281.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++++.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45578999999999999999999999999876554 34455 4455667899999 899999999999999999999
Q ss_pred eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 998899999999999965 6679999999999999999999999999999999999999999999999986 5669
Q ss_pred EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1103)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 637 (1103)
++||+.+++.+..+..+..+...+.+++|.+.+... ... .+...+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCEE
Confidence 999999999999999876666889999887764322 011 112457889999999999
Q ss_pred EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987653221110
Q ss_pred cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCC
Q 001310 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1103)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1103)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCC-EEEEEc-CCeEEEEEcCCcee-eEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001310 798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1103)
Q Consensus 798 ~~~~~~~v~~l~~s~d~~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1103)
.+|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01556677777777777 777766 67788888877643 566655 56678888665 5679999999999999999
Q ss_pred CCc---------eeEEEeccCCCCEEEEEEccCCC---EEEEEeCCCeEEEEEcCC
Q 001310 874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 874 ~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~s~dg~I~iwd~~~ 917 (1103)
.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22344667899999999999999 788888999999999875
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-36 Score=345.31 Aligned_cols=383 Identities=12% Similarity=0.139 Sum_probs=285.9
Q ss_pred EecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEEEEEeCCCe
Q 001310 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHI 419 (1103)
Q Consensus 341 ~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~las~~~d~~ 419 (1103)
.|+|+++ .+++++ .|+ .+++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCccc-cccccc------ccc-ccceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 5889998 456544 377 44555543 1378999999999999 9999999999999
Q ss_pred EEEEEecC---CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---CCceeEEeecCCCceEEEEe
Q 001310 420 VQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 420 i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~ 493 (1103)
|+|||+.+ +........+ +|...|.+++|+|+++ +|++++.||+|++||+. +++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433333333 5999999999999999 89999999999999994 77777777766 6677766
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
++.. +...+.++. +++++.++++++. ++.|++||+.+++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 5421 122334444 6789999999986 667999999999999999
Q ss_pred ec--ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe----cCCCEEEEEECCCe
Q 001310 572 QG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANENR 645 (1103)
Q Consensus 572 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~g~~l~~~~~dg~ 645 (1103)
.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ |++.+|++++.|+.
T Consensus 209 ~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 209 ENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp ECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred ccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCc
Confidence 88 55 8999999999999999999999999999999999988863322 368899655 56889999999999
Q ss_pred EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1103)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1103)
|++||+.+++.+..+.++...+..+.++
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 312 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFL---------------------------------------------------- 312 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGS----------------------------------------------------
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceec----------------------------------------------------
Confidence 9999999988877776655544333333
Q ss_pred eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1103)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 805 (1103)
|+++.+ .+. .+....|...|
T Consensus 313 ------------------~~~~~l----~~~--------------------------------------~~~~~~~~~~v 332 (437)
T 3gre_A 313 ------------------PIEKGL----EEL--------------------------------------NFCGIRSLNAL 332 (437)
T ss_dssp ------------------CBCSSG----GGC--------------------------------------CCCCCCSGGGG
T ss_pred ------------------cccccc----ccc--------------------------------------eecccccCCce
Confidence 221111 000 00001277889
Q ss_pred eEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCC---CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001310 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1103)
.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+.....
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~ 402 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDD 402 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC---------
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCc
Confidence 999999 788899887 8999999999999999888754 3455666776 55444433 33344455566
Q ss_pred eccCCCCEEEEEEccC--CCEEEEEeCCCeEEEEE
Q 001310 882 LEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 914 (1103)
Q Consensus 882 l~~h~~~V~~l~~s~d--g~~l~s~s~dg~I~iwd 914 (1103)
+..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6779999999999998 78999999999999995
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=349.12 Aligned_cols=337 Identities=14% Similarity=0.223 Sum_probs=265.7
Q ss_pred CceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999987 88888 889999999999876332222222345699999999999999999999999
Q ss_pred EEEcCCC----CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccc
Q 001310 648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1103)
Q Consensus 648 iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~ 723 (1103)
+|++... +.+..+.
T Consensus 93 vw~~~~~~~~~~~~~~~~-------------------------------------------------------------- 110 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFS-------------------------------------------------------------- 110 (416)
T ss_dssp EECCSSTTSCCCEEEECC--------------------------------------------------------------
T ss_pred Eeecccccccccchhhcc--------------------------------------------------------------
Confidence 9998862 1222222
Q ss_pred eeeeccCccccccEEEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC
Q 001310 724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 802 (1103)
Q Consensus 724 ~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1103)
+|...|.+++|+|+ +..+++++.||.|++|++.......... . .... ....+|.
T Consensus 111 --------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~---------~~~~-~~~~~~~ 165 (416)
T 2pm9_A 111 --------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------T---------PLTP-GQSMSSV 165 (416)
T ss_dssp --------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------C---------CBCC-CCSCCSS
T ss_pred --------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------c---------cccc-ccccCCC
Confidence 25667788888887 7888888888999988876543100000 0 0000 0012488
Q ss_pred CCeeEEEEecC-CCEEEEEc-CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCCCEEEEEeCCC---eEEEE
Q 001310 803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY 871 (1103)
Q Consensus 803 ~~v~~l~~s~d-~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw 871 (1103)
..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...|++++|+|++..++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 89999999999 78899887 799999999999999988876 789999999994457999999999 99999
Q ss_pred EcCCc-eeEEEec-cCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310 872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 872 d~~~~-~~~~~l~-~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 948 (1103)
|+.++ +.+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.. ....+|.. .|.+++|+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----~~~~~~~~---~v~~~~~s~~~ 317 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----SQFPARGN---WCFKTKFAPEA 317 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----EEEECSSS---CCCCEEECTTC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----eeecCCCC---ceEEEEECCCC
Confidence 99986 6777888 8999999999999 9999999999999999999987633 33334443 79999999999
Q ss_pred -CEEEEE-eCCeEEEEECCCceEEEEe----------------------------------eCCCCcCeEEEEEccCCCE
Q 001310 949 -TRFLLV-HETHLAIYEAEELTCLKQW----------------------------------FPISSVPISQATFSCDCRM 992 (1103)
Q Consensus 949 -~~l~~~-~d~~v~iwd~~~~~~~~~~----------------------------------~~~h~~~v~~l~fs~dg~~ 992 (1103)
.+|+++ .|+.|++||+.++...... ...|..++.+++|+|||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 788884 8999999999876643221 0115778889999999999
Q ss_pred EEEEecCCcEEEEeCCCc
Q 001310 993 VFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 993 l~t~~~dg~v~vWd~~~~ 1010 (1103)
|++++.|++|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999875
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.1e-36 Score=343.36 Aligned_cols=351 Identities=12% Similarity=0.106 Sum_probs=284.0
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
..+++++|+|+|+ +|++|+.|+.|++||+.+++.... +..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 3456899999999 589999999999999988765532 3344 455566889999999999
Q ss_pred eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1103)
+.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876543 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ecCCccEEEEEECCCeEEEEEcCCCCeeEEecC---CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
+ ++.+|++++.||.|++||+.+++....+.. +...+.++++.+++... ..
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LH 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CG
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------ee
Confidence 5 678999999999999999999888877764 44577777776653221 01
Q ss_pred ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEE
Q 001310 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 650 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~ 650 (1103)
..+ ...+.+++|+|+++++++++.||.|++||+.+++.+..+... +...+.+++|+|+++ +|++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 112 267888899999999999999999999999999888777542 235689999999999 999999999999999
Q ss_pred cCCCCe-eEeccc-cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee--
Q 001310 651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL-- 726 (1103)
Q Consensus 651 ~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~-- 726 (1103)
+.+++. +..+.. +...+.++.+ ++++++++++.|+.+++|++...........
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 566665 5555665543 4577899999999999999875322211100
Q ss_pred -eccCccccccEEEEEEecCCc---EEEEeecCceEEEeecCC
Q 001310 727 -LLPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 727 -~~~~~~~~~~i~~~~~s~~g~---~l~~~~~dg~i~vw~~~~ 765 (1103)
......+...|.+++|+|+++ .+++++.+|.+.+|++..
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 001134778899999999999 899999999999998653
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-34 Score=319.83 Aligned_cols=322 Identities=14% Similarity=0.136 Sum_probs=264.1
Q ss_pred cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1103)
Q Consensus 439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1103)
.|..+|.+++|+|||+ .++++..++.+.+|+...........+|...|.+++|++ ++.++++++ ||.|++||+.+
T Consensus 7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 3567899999999999 787887777777777666555555568999999999964 678999998 99999999987
Q ss_pred CCee---EEec--CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCC
Q 001310 519 LGAR---VDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD 591 (1103)
Q Consensus 519 ~~~~---~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1103)
.... ..+. .+...+.+++|+|+++++++++. ++.|++||+.+++ ....+..+. ..+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK 154 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence 6532 2222 67889999999999999999876 5679999999887 555666666 8899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1103)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~ 671 (1103)
++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.|+.|++||+.+++.+..+
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 221 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------- 221 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence 99999999999999999999998887653 46899999999999999999999999998765322110
Q ss_pred EecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEE
Q 001310 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1103)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 751 (1103)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEc
Q 001310 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1103)
Q Consensus 752 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~ 830 (1103)
.+...+.+++|+|+++++++++ ++.|++||+
T Consensus 222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 0233455666667776666665 567777777
Q ss_pred CCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeE
Q 001310 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910 (1103)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I 910 (1103)
.+++. ..+..|...|++++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus 254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 66654 35667889999999999 8999999999999999999999877554 488999999999999999999999999
Q ss_pred EEEEcC
Q 001310 911 FVWDVD 916 (1103)
Q Consensus 911 ~iwd~~ 916 (1103)
++|++.
T Consensus 331 ~iw~~~ 336 (337)
T 1gxr_A 331 TVYEVI 336 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.9e-35 Score=357.96 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=253.1
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
....|++|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 34578999999999999998755899999999999999987543211 0112277899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe---e
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 482 (1103)
|+|++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ .|++++.|++|++||.......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986554 6789999999999999999 7999999999999997655433322 4
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+|...|.+++|++......+++++.|++|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999987665578999999999999999999998899999999999999999999999986 667999999
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-----------------CCCC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN 625 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v 625 (1103)
.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+
T Consensus 591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999988776543 5799999999987776665 56799999999998877754311 1125
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
.+++|+|+|++|++|+.||.|++|++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 689999999999999999999999975
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.2e-34 Score=330.84 Aligned_cols=328 Identities=16% Similarity=0.222 Sum_probs=281.7
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
..+.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3555687 689999999999999999987765 77899999999997
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1103)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999986554 678999999999996 45 69999999999999999999999999999
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
..|.++++ ++.++++++.||.|++||+.+.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999988899999999999999 8899999986 556999999999
Q ss_pred eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC-CCCCCceEEEecCCCEEEEEECCC
Q 001310 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~dg 644 (1103)
+.+..+.+|. ..+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 78888877 46799999999999999999999999887632 34568888885 68999999999
Q ss_pred eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccce
Q 001310 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1103)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1103)
.|++||+.+++.+..+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 401 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 401 (445)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence 9999999988766544210
Q ss_pred eeeccCccccccEEEEEEecCCcEEEEeecCce----EEEeecCC
Q 001310 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 765 (1103)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----i~vw~~~~ 765 (1103)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00125678899999999999999999987 88988764
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.7e-34 Score=318.85 Aligned_cols=288 Identities=20% Similarity=0.225 Sum_probs=239.8
Q ss_pred eccCCCccEEEEEE-----CC-CCCEEEEEeCCCeEEEEEecCCCcc----ccceEeccccccEEEEEEecCCCceEEEE
Q 001310 391 LVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVIT 460 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s 460 (1103)
.+.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 47899999999999 77 9999999999999999999865421 23346789999999999999999 8999
Q ss_pred EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEE
Q 001310 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAY 537 (1103)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~ 537 (1103)
++.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999965 678999999999999999974 3333332 56778999999
Q ss_pred ccCC----------CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 538 SANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 538 s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
+|++ .++++++. ++.|++|| ..++....+.+|. ..|.+++|+|++++|++|+.||.|++||+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9987 78888876 66799999 4567777888877 89999999999999999999999999999
Q ss_pred C-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE--ecc-----------ccccceeeeEEe
Q 001310 608 N-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSVN 673 (1103)
Q Consensus 608 ~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~i~~~~~~ 673 (1103)
. .......+... ..|.+++|+|++.+++++. |+.|++|++.+++... .+. +|...+.+++|+
T Consensus 243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCCSSCSEEEECS---SCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CCCcccceeecCC---CcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 4 44444444322 3489999999998887654 6779999998765432 222 455667777775
Q ss_pred cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
|+|+++++++.|+.|++|++.+
T Consensus 319 ----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 319 ----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred ----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 7899999999999999999764
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.1e-34 Score=331.58 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=267.0
Q ss_pred cceeEecccCCcCc-eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
.....+|.+|.+.| .++.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567889998886 66666 455 699999999999999999987765 67899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCCce---
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 477 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~--- 477 (1103)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++++.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999988 99999999999999999987554 7889999999999995 556 899999999999999987763
Q ss_pred --------------------eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEE
Q 001310 478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1103)
Q Consensus 478 --------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1103)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...|.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 4567889999988843 5679999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 5669999999999999999888 899999997 5799999999999999999988776664
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEe-ccccccceeeeEEe
Q 001310 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 673 (1103)
Q Consensus 618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~ 673 (1103)
.. ..+..++|+++++++++++ |+.|++||+.+++.+.. ...+...+.+++++
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 32 3478899999999999999 89999999999998875 67788888888886
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-34 Score=327.72 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=249.0
Q ss_pred cceeEecccCCcCceEEEecCCC-ceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
....+.+.+|.+.|++++|+|+| + +|++|+.|+.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 45677889999999999999999 6 79999999999999999887665311 34799999999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1103)
Q Consensus 403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1103)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999986 33332222334558899999999999 8999999999999998 68889999
Q ss_pred ecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCC----CCeeEEecCCCccEEEEEEcc-CCCEEEEEecCCCCce
Q 001310 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 555 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~ 555 (1103)
.+|...|.+++|++ ++. ++++++.|+.|++||+.+ ......+ .+...+.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 556 899999999999999997 4444444 6888999999999 9999999976 66
Q ss_pred eEEEEeCCCCeeEEEEeccccc--------------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310 556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1103)
.|++||+.+++....+.++... ...+..++|+|++++ +++.||.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 7999999998887777654311 133445666677665 777999999999999999999987655
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
...+..++|+|++++|++++ |+.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
No 57
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-34 Score=328.52 Aligned_cols=299 Identities=12% Similarity=0.120 Sum_probs=257.3
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC------eeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1103)
.+.+++.+|.+.|++++|+| + +|++|+.||.|+|||+.+++ .+.. +.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence 45678899999999999999 4 68999999999999999887 3332 5689999
Q ss_pred EEEEEECCC----C---CEEEEEeCCCeEEEEEecCCCccc--cceEeccc-----cccEEEEEEe----cCCCceE-EE
Q 001310 399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI 459 (1103)
Q Consensus 399 V~~~~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h-----~~~v~~~~~s----~d~~~~~-l~ 459 (1103)
|.+++|+|+ + ++|++++.|+.|++||+.+++... ....+.+| ...|.+++|+ |+++ . |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999999 9 999999999999999999887510 02367778 5899999999 9999 7 99
Q ss_pred EEcCCCceEEEeCCC------CceeE-----Eee-------cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe
Q 001310 460 TCGDDKTIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521 (1103)
Q Consensus 460 s~~~d~~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 521 (1103)
+++.|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+.+.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77776 774 4899999999965 66 999999999999999999888
Q ss_pred eEEecC---C---CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec-------------ccccCCceE
Q 001310 522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS 582 (1103)
Q Consensus 522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~ 582 (1103)
...+.. + ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |. ..|.
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 295 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM 295 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence 888888 7 88999999999999999988620 017899999999999999987 66 8999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc------CC-------------CCCCCCceEEEecCC---------
Q 001310 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG--------- 634 (1103)
Q Consensus 583 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~g--------- 634 (1103)
+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 99999999999999999999999999999999988 43 014569999999998
Q ss_pred -CEEEEEECCCeEEEEEcCCC
Q 001310 635 -TLLAVIANENRIKILETPES 654 (1103)
Q Consensus 635 -~~l~~~~~dg~i~iw~~~~~ 654 (1103)
++|++++.||.|++|++.++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC-
T ss_pred cceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=346.32 Aligned_cols=344 Identities=10% Similarity=0.062 Sum_probs=251.6
Q ss_pred cceeEecccCCcCceEEEecCCC---------ceEEEE-------------------EcCCCcEEEEECCCCCeeeeeee
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNF 375 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg---------~~llas-------------------gs~d~~v~iwd~~~~~~~~~~~~ 375 (1103)
..+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~-- 199 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK-- 199 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE--
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE--
Confidence 34444444 56789999999886 4 4555 457789999999887643210
Q ss_pred eEeeccccccceeeeeccCCCccEEEEEECCC------CCEEEEEeCCCeEEEEEecCCCcc--------ccceEecccc
Q 001310 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHV 441 (1103)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~l~~h~ 441 (1103)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|.
T Consensus 200 -------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 200 -------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp -------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred -------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 0114568899999999997 579999999999999999876432 1234678999
Q ss_pred ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcCCC
Q 001310 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSL 519 (1103)
Q Consensus 442 ~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~ 519 (1103)
..|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++...+++ .+|++++.|++|++||+++.
T Consensus 267 ~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 267 SLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp TCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 999999999864 59999999999999999774 45678999999999954335566 79999999999999999887
Q ss_pred CeeEEecCCC--ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe
Q 001310 520 GARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1103)
Q Consensus 520 ~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 597 (1103)
+....+..+. ..+.+++|+|+++.+++++. ++.|++||++++..+..+.+|. ..|.+++|+|+++.|++|+
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEE
T ss_pred CcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEE
Confidence 7655554443 25788999999999988865 5679999999999888888887 8999999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEEcCC---CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeEeccccccceeeeEEe
Q 001310 598 DDHVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVN 673 (1103)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~ 673 (1103)
.||+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+
T Consensus 417 ~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs 492 (524)
T 2j04_B 417 ADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWN 492 (524)
T ss_dssp TTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEEC
T ss_pred CCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECC
Confidence 9999999998654 22111100 0111356889999998553 222 23344332 456777888999999999998
Q ss_pred cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
|.+ +.+..+++|+.+|.|+||++..
T Consensus 493 p~~-------------------~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 493 ETS-------------------AGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CST-------------------TTTTEEEEECTTSEEEEEECSC
T ss_pred CCC-------------------CccHHHHhhccCceEEEEEccc
Confidence 542 2356899999999999999873
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=317.89 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=259.3
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
....|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3466899999999999999998 689999999999999999987765 67899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----CceEEEeCCCCc----
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 476 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~---- 476 (1103)
|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987655 344 888999999999999 78999888 999999988664
Q ss_pred -------eeEEeecCCC--ceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310 477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1103)
Q Consensus 477 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1103)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3455566666 899999965 667999999999999999998 6677788889999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCee
Q 001310 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 612 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~ 612 (1103)
++. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 976 66799999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1103)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~ 655 (1103)
+..+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99988764 469999999999999999999999999998653
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=311.18 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=256.7
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
....++|.+|.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677899999999999999 9998 689999999999999988876654 556899999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| ++. .+++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876555555578899999999999 456 799999999999999 7888899999
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC-CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 4445556665 788999999999999 777765 667999999
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence 9999999999887 899999999998 69999999999999999999999988764 4689999999998 667999
Q ss_pred CCeEEEEEcCCCCeeE
Q 001310 643 ENRIKILETPESNSVD 658 (1103)
Q Consensus 643 dg~i~iw~~~~~~~~~ 658 (1103)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999875544
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=340.46 Aligned_cols=350 Identities=10% Similarity=0.044 Sum_probs=244.2
Q ss_pred CCccEEEEEECCCC---------CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1103)
Q Consensus 395 h~~~V~~~~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1103)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56899999999987 799999866420 01368888 799999999
Q ss_pred ceEEEeCCCCcee----EEeecCCCceEEEEeeec----CCccEEEEEECCCeEEEEEcCCCCe-----------eEEec
Q 001310 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1103)
Q Consensus 466 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 526 (1103)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887753 456778899999999886 3467999999999999999986542 23567
Q ss_pred CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eEEEEecccccCCceEEE--EEcCCC-CEEEEEeCCCcE
Q 001310 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1103)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i 602 (1103)
.+...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ ..|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888875 6779999999764 445677777 899999 578887 889999999999
Q ss_pred EEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeee
Q 001310 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1103)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 682 (1103)
++||+++++.+..+..+.....+.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999888766665443223478999999999999999999999999987654443332
Q ss_pred ccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEee
Q 001310 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1103)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~ 762 (1103)
|...|.+++|+|+|+.|++++.||+|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 556677777888888888888888888887
Q ss_pred cCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcC-CceeeEEecC
Q 001310 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 841 (1103)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~ 841 (1103)
...... ....+. ....+...+.+++|+|+++.+... +.+.+|+.. ++..+.++.+
T Consensus 426 ~~~~~~---------------~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~~--~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRLL---------------HGIKNS-------SATQKSLRLWKWDYSIKDDKYRID--SSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSSTT---------------TCC-------------CCCCEEEECBCCSSSCEEEEC--CCCCCCC-------------
T ss_pred chHhhc---------------cccccC-------ccceeeeEEEEeccCCCCCeEEcc--CCceecccccCCcceeeecC
Confidence 533210 000000 000022346788999999865332 233344433 5677888999
Q ss_pred CCCCeeEEEEcCCC---CCEEEEEeCCCeEEEEEcCC
Q 001310 842 PSPTATSLAFNPHD---NNVIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 842 ~~~~i~~l~~s~~d---~~~lasg~~dg~v~iwd~~~ 875 (1103)
|...|.+++|+| + +.++|+|+.||.|+||++.-
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 6 45999999999999999874
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.9e-33 Score=323.49 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=269.0
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6689887543 355579999999999999999999987655 678999999999998 44 799999999999999
Q ss_pred CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+++....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999984 358999999999999999999999899999999999998 7889999876
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
++.|++||+.+++.+..+.+|. ..|.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 5669999999999999998877 88999999 788999999999999999999999998876633 4555555
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1103)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998766443322110
Q ss_pred cccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCce
Q 001310 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1103)
Q Consensus 712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1103)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEe-----cCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001310 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 865 (1103)
Q Consensus 792 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1103)
..|...|.+++++ ++++++++ ||.|++||+.+++.+..+ ..+...|++++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155566677764 46777776 688888888888888777 45778999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001310 866 ST----ILIYNARS 875 (1103)
Q Consensus 866 g~----v~iwd~~~ 875 (1103)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999875
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5e-33 Score=324.88 Aligned_cols=346 Identities=15% Similarity=0.193 Sum_probs=276.7
Q ss_pred eEEEEecccccCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310 567 IKRTYQGLQLQHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~ 645 (1103)
....+.+|. .. +.++.+ +++++++|+.||+|++||+.+++.+..+..| ...|.+++|+|++ ++++++.||+
T Consensus 113 ~~~~l~~h~---~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLRGHM---TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEECCS---SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEcCCC---CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCC
Confidence 455777777 44 566666 5679999999999999999999999999866 4579999999988 9999999999
Q ss_pred EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1103)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1103)
|++||+.+++.+..+.+|...+.++++.+ .+++.++++++.|+.+++|++..........
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVE--------------------YKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEE--------------------SSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEec--------------------CCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 99999999999999999999999999985 3678899999999999999987433221111
Q ss_pred eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1103)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 805 (1103)
. ......+.+.+++.. .....+ .+|...+
T Consensus 245 ~-------~~~~~~~~~~~~~~~------------------------------------------~~~~~~--~~~~~~v 273 (464)
T 3v7d_B 245 E-------EHDYPLVFHTPEENP------------------------------------------YFVGVL--RGHMASV 273 (464)
T ss_dssp ---------CCSSEEESCGGGCT------------------------------------------TEEEEE--CCCSSCE
T ss_pred c-------cCCcceEeeccCCCe------------------------------------------EEEEEc--cCccceE
Confidence 0 000000111111100 000001 1367777
Q ss_pred eEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1103)
.++ +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp EEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 766 68899999997 79999999999999999999999999999999 899999999999999999999999999999
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001310 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1103)
Q Consensus 885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~ 964 (1103)
|...|.+++|+ +++|++++.||.|++||+.+++.... . ... ..+..++|+|++++++++.|+.|++||+
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~--~--~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--Y--HHT-----NLSAITTFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE--E--ECT-----TCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee--e--cCC-----CCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence 99999999997 58999999999999999998653221 1 111 2577899999999999988999999999
Q ss_pred CCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
.+++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 420 ~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 420 RSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999987777899999999997 445556666777666554
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=320.89 Aligned_cols=301 Identities=12% Similarity=0.201 Sum_probs=249.5
Q ss_pred ccceeEecccCCcCceEEEecCCCceEEEEEcC---CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1103)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1103)
|....+.+.+|.+.|.+++|+|++..++++|+. |+.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 445566778999999999999999878889987 999999999998765431 22589999
Q ss_pred EEEEECCC---CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEE------EecCCCceEEEEEcCCCceEEE
Q 001310 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 400 ~~~~~spd---g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~------~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
.+++|+|+ +++|++|+.||.|++||+.+++ .....+.+|...|.+++ |+|+++ .|++++.|+.|++|
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVW 144 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEE
Confidence 99999998 7999999999999999999886 12336889999999995 467888 89999999999999
Q ss_pred eCCCCc-eeEEeecCCC----ceEEEEee--ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc---C
Q 001310 471 DAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---N 540 (1103)
Q Consensus 471 d~~~~~-~~~~~~~~~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---d 540 (1103)
|+.+++ .+..+..|.+ .+.++++. .++++.++++++.||.|++||+++.+... ...+...+.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCC
Confidence 999987 7788876655 78888843 24577899999999999999999877644 355677999999999 9
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeeEEEEe-----cccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV---- 610 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---- 610 (1103)
+.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 224 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 224 MNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred CCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 999999876 6679999998877655554 555 8999999999998 7999999999999998754
Q ss_pred ---------------eeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCC
Q 001310 611 ---------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1103)
Q Consensus 611 ---------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~dg~i~iw~~~~~~ 655 (1103)
+.+..+..| ...|.+++|+|++++|+ +++.|+.|++|++.+..
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345556655 45699999999999998 79999999999998654
No 65
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.8e-33 Score=309.21 Aligned_cols=299 Identities=21% Similarity=0.303 Sum_probs=250.2
Q ss_pred ccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCCCcc--ccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1103)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 689999999999999999876542 23446789999999999999999 899999999999
Q ss_pred EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCC--CEEE
Q 001310 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANG--RRLF 545 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg--~~l~ 545 (1103)
+|+...+........+...+..+.+.+ ++.++++++.|+.+++||........ ....+...+..++|++++ .+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888888888754 66799999999999999987655443 445677889999999875 4566
Q ss_pred EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
+++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence 6654 5679999999999999999888 89999999999999999999999999999999999888765 358
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1103)
.+++|+|++.++ +++.|+.|++||+.++..+..+.....
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999987655 555689999999988766554432110
Q ss_pred cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC
Q 001310 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1103)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~ 766 (1103)
.....+|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237788999999999999999999999999997654
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=327.05 Aligned_cols=274 Identities=12% Similarity=0.181 Sum_probs=212.1
Q ss_pred CccceeEec-ccCCcCceEEEecC-CCceEEEEEcCCCcEEEEECCC---CCeeeeeeeeEeeccccccceeeeeccCCC
Q 001310 322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1103)
Q Consensus 322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasgs~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1103)
.....+..+ .+|.+.|++++|+| +++ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 345677788 89999999999999 998 799999999999999877 432210 0011499
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEec---CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1103)
..|.+++|+|++++|++|+.||+|++||+. +++... .+.+| .+..+.|+|++
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~-------------------- 166 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG-------------------- 166 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence 999999999999999999999999999995 544332 34444 67777777643
Q ss_pred CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC--CCccEEEEEEccCCCEEEEEecCC
Q 001310 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+...+.++.+...+++.++++++.||.|++||+.+.+....+.. +...|.+++|+|++++|++++.
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 234 (437)
T 3gre_A 167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-- 234 (437)
T ss_dssp ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence 33344555555567888999999999999999999998888887 7789999999999999999986
Q ss_pred CCceeEEEEeCCCCeeEEEEe-cccccCCceEEEEEc----CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-----
Q 001310 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----- 621 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 621 (1103)
++.|++||+++++.+..+. .+. ..|.+++|+ +++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 5669999999999998886 555 689999665 4577999999999999999999999988876532
Q ss_pred -------------------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310 622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1103)
Q Consensus 622 -------------------~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 656 (1103)
...|.+++|+ ++++|++++.|+.|++||+.+++.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 2224555555 445555555555555555554433
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.2e-34 Score=321.29 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=247.8
Q ss_pred EecccCCcCceEEEecCC---CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spd---g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 455699999999999984 44456666667799999999887665321 1113347889999999
Q ss_pred CCC----CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
+|+ |++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.||.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987554 6779999999999999 787 89999999999999999999999
Q ss_pred Ee---ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE----------------------------ecCC
Q 001310 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----------------------------YDAP 528 (1103)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~ 528 (1103)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+.+.+.... ...+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999965 678999999999999999987654322 2237
Q ss_pred CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--------------EEEEecccccCCceEEEEEcCC--CCE
Q 001310 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1103)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 592 (1103)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778988875 66799999987744 66777766 78999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
|++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 44467666545679999999999999999999999999975
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-34 Score=330.77 Aligned_cols=304 Identities=17% Similarity=0.191 Sum_probs=238.9
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
...+...+|...|+|++|+|.+..+||+|+.||+|+|||+.+++..... .+.+|.+.|++++|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f 172 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKF 172 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEE
Confidence 3445667899999999999965448999999999999999887654321 15689999999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 405 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
+| ++.+|++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+
T Consensus 173 ~p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~ 248 (435)
T 4e54_B 173 NPLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRM 248 (435)
T ss_dssp CSSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBC
T ss_pred eCCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEec
Confidence 98 78999999999999999998753 222212223445688999999999 89999999999999975 567788899
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1103)
|...|.+++|+|.. ..++++++.|+.|++||+.+..... ....|...|.+++|+|+|++|++++. ++.|++|
T Consensus 249 h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iw 323 (435)
T 4e54_B 249 HKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVY 323 (435)
T ss_dssp CSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEE
T ss_pred ccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEE
Confidence 99999999997643 3588999999999999998766543 33567889999999999999999986 5669999
Q ss_pred eCCCCeeEEEEeccccc---CCceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 561 NESEGAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 561 d~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
|+.++.....+..|... ...+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v 402 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGI 402 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcE
Confidence 99999888777665411 11233456777777766654 34679999999999988875432 3457
Q ss_pred ceE-EEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310 626 PRI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1103)
Q Consensus 626 ~~v-~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 656 (1103)
.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 776 6999999999876 78999999988754
No 69
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.9e-33 Score=314.05 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=246.8
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC--eeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+..|.++|++++|+|||+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 78999999999999999886 4433 6689999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce---e-EEeec
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 483 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~ 483 (1103)
+++|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++||+.++.. . .....
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998876332 224567999999999999999 899999999999999998873 3 33367
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcC------------------CCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1103)
|...|.+++|++ ++.++++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66899999999999999953 5566777888888999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeE----------
Q 001310 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~---------- 613 (1103)
+++. ++.|++||+.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6679999999999999998877 899999999999877777 899999999987 4311
Q ss_pred ----------------------------EEEcCCCCCCCCceEEEe-cCC---CEEEEEECCCeEEEEEcCCC
Q 001310 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1103)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~g---~~l~~~~~dg~i~iw~~~~~ 654 (1103)
..+. .++...|.+++|. ++| ++|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1345679999866 666 99999999999999998764
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-33 Score=324.34 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=231.9
Q ss_pred EEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEECCCeE
Q 001310 569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1103)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i 646 (1103)
....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus 113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3444555 78999999994 5689999999999999999887766666656677899999998 78999999999999
Q ss_pred EEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee
Q 001310 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1103)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 726 (1103)
++||+.++.... +
T Consensus 190 ~iwd~~~~~~~~-~------------------------------------------------------------------ 202 (435)
T 4e54_B 190 RLQDFKGNILRV-F------------------------------------------------------------------ 202 (435)
T ss_dssp EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred EEeeccCCceeE-E------------------------------------------------------------------
Confidence 999986431100 0
Q ss_pred eccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCee
Q 001310 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1103)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 806 (1103)
... + .+...+.
T Consensus 203 ---------------~~~----------~--------------------------------------------~~~~~~~ 213 (435)
T 4e54_B 203 ---------------ASS----------D--------------------------------------------TINIWFC 213 (435)
T ss_dssp ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred ---------------ecc----------C--------------------------------------------CCCccEE
Confidence 000 0 1344567
Q ss_pred EEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE---e
Q 001310 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L 882 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~---l 882 (1103)
+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|++||+.+++.... .
T Consensus 214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~ 292 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292 (435)
T ss_dssp CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence 788999999999987 7999999986 5667788899999999999995556899999999999999998764433 3
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--------
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------- 954 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-------- 954 (1103)
.+|...|++++|+|||++|++++.||.|++||+.++............ .. ....+....|+|++.+++++
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-HF-QHLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC-CC-SSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc-cc-ccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 579999999999999999999999999999999987654422111111 00 00123345566666666553
Q ss_pred -----eCCeEEEEECCCceEEEEeeCCCCcCeEEE-EEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310 955 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 955 -----~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+|||+++++..
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999987 6999999999876 889999999988754
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.2e-33 Score=314.50 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=241.8
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCE
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~ 636 (1103)
+|+....+....+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 44556667777888877 899999999999 899999999999999999998888887655567799999999 7899
Q ss_pred EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
|++++.|+.|++||+.+. .+..+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998742 1110000
Q ss_pred ccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccC
Q 001310 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1103)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1103)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001310 797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 874 (1103)
Q Consensus 797 ~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~ 874 (1103)
..++...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001456778888888888888887 688888888 5777888889999999999999 777 99999999999999999
Q ss_pred C----ceeEEEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeec--CCCccc-------CCCCce
Q 001310 875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET 940 (1103)
Q Consensus 875 ~----~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~ 940 (1103)
+ +..+..+ +|.+.|.+++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5666666 6999999999999 99999999999999999999876433211111 011111 012344
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCC-CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 941 ~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
.++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+||+++|++++ ||.|++||+++
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4566666666 2247899999999999998885432 467788889999999999997 99999999874
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=320.12 Aligned_cols=347 Identities=11% Similarity=0.121 Sum_probs=241.2
Q ss_pred eEEEEeCCCCeeEEEEecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcC-----------CCCCC
Q 001310 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLP 623 (1103)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 623 (1103)
.+++|+...++....+.+|. ..|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+..
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 36778887788888888877 9999999999 999999999999999999998765443321 12445
Q ss_pred CCceEEEec-CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310 624 ENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1103)
Q Consensus 624 ~v~~v~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1103)
.|.+++|+| +++++++++.|+.|++|++.+++....+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----------------------------------------- 139 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------------------------------
Confidence 789999999 77899999999999999987653332211
Q ss_pred eeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCee
Q 001310 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1103)
Q Consensus 703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 782 (1103)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCceeeccCCCCCCCCCeeEEEEec---CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-
Q 001310 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN- 857 (1103)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~- 857 (1103)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| +++
T Consensus 140 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 200 (408)
T 4a11_B 140 ------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDY 200 (408)
T ss_dssp ------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTT
T ss_pred ------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCc
Confidence 122233344444 444677776 68899999998988899999999999999999 666
Q ss_pred EEEEEeCCCeEEEEEcCCce-eEEEe---------------ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310 858 VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~ 921 (1103)
+|++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 69999999999999998765 34444 578999999999999999999999999999999987643
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCc
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1001 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~ 1001 (1103)
............ ..........+.+.+++++.++.|++||+.+++.+.. +.+|...|++++|+||+++|++++.||.
T Consensus 281 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 281 LVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 321111111111 1123334444556666668999999999999999987 5689999999999999999999999999
Q ss_pred EEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1002 LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1002 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
|++||+.+++.+....... ......|.....+.+.+.++.+++|+..
T Consensus 358 i~iw~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 358 ILAWVPSLYEPVPDDDETT------------------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEECC---------------------------------------------------------------
T ss_pred EEEEeCCCCCccCCCCceE------------------------eccccccccceeecccCccCceeecCCc
Confidence 9999999998765444111 0111222224567778899999999863
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=307.82 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=259.3
Q ss_pred eeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1103)
Q Consensus 390 ~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1103)
..+.+|.+.|++++|+|++++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3478999999999999999999999999999999999987554 7889999999999999999 8999999999999
Q ss_pred EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-----CeEEEEEcCCCCe-----------eEEecCCCc--c
Q 001310 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 531 (1103)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~ 531 (1103)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999888 889999999965 67899999999 9999999976542 223344444 8
Q ss_pred EEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 610 (1103)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 66799999998 78888888877 89999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--------------eEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1103)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 676 (1103)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++++
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 4589999999999999999988 89999999999999999999999999997
Q ss_pred ceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1103)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1103)
|+++++++++.|+.|++|++...
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence 78899999999999999998753
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-33 Score=314.25 Aligned_cols=299 Identities=11% Similarity=0.121 Sum_probs=232.0
Q ss_pred cCceEEEecCCCceEEEEEcCC-------CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
.+|++++|+|||+ +|++|+.| +.|+||++..+.......+ .......+.+|...|.+++++
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS-- 82 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--
Confidence 4899999999998 78888653 3599999987654321111 111223377899999888764
Q ss_pred CCEEEEE-----------eCCCeEEEEEecCCCcccc-ce-----EeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 408 GSLLGVA-----------YSKHIVQLYAYHGGSDARQ-QL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 408 g~~las~-----------~~d~~i~iwd~~~~~~~~~-~~-----~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
++.+++| +.|+.+++|++.++..... .. ....+...+.+++|||||+.+.+++++.|++|+||
T Consensus 83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence 5566665 3567899999987643211 11 12234556899999999996556677789999999
Q ss_pred eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--ecCCCccEEEEEEccCCCEEEEEe
Q 001310 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
|+.+++++..+. |...|.+++|+| ++.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++++++
T Consensus 163 d~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 163 DPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred ECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999886 778899999954 77899998855 556666666665543 345677899999999999999998
Q ss_pred cCCCCceeEEEEeCCCCee----EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCCCCC
Q 001310 549 TSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLP 623 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 623 (1103)
.++.....+++|+...+.. ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred cCCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 8766566789999877654 23455555 88999999999999999999999999999999999876 455 45
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 624 ENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
.|++++|+|||++|++++.|++|+||+++..
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7999999999999999999999999999754
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-32 Score=307.96 Aligned_cols=203 Identities=12% Similarity=0.121 Sum_probs=172.1
Q ss_pred CCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1103)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999987664 6899999999999998886 778899999999 89999999855 56777777776
Q ss_pred eEE--EeccCCCCEEEEEEccCCCEEEEEeCCC----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310 878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1103)
Q Consensus 878 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 951 (1103)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++..+..... ......++.. .|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 553 3456899999999999999999999887 688999887653322 1223334443 79999999999999
Q ss_pred EEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310 952 LLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 952 ~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
|+| .|++|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 995 88999999999999999878899999999999999999999999999999999654
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-32 Score=312.51 Aligned_cols=299 Identities=16% Similarity=0.229 Sum_probs=246.3
Q ss_pred ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1103)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 408 (1103)
...+|.+.+.+..+++++.. +++++.|+.|++||+.+++..... ...|...|.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDG 146 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTS
T ss_pred eCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCC
Confidence 34577777655444444454 566778999999999999876541 22388999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCceeEEeecCCCc
Q 001310 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAP 487 (1103)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~ 487 (1103)
++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. .+++++.|+.|++||+. .+..+..+.+|...
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 219 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred CEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence 999999999999999999987555 678999999999994 45 79999999999999998 56778889999999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
|.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.
T Consensus 220 v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 220 VCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence 99999966 6789999999999999999999888889899999999999998765555432 12377899999999999
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~ 645 (1103)
+..+.. . ..+.+++|+|+++.++++ +.||.|++||+.+++.........+...|.+++|+|+|++|++++.||.
T Consensus 297 ~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 297 VNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp EEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred EEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 888864 2 589999999999999995 4899999999999777665443344567999999999999999999999
Q ss_pred EEEEEcCCCCeeEec
Q 001310 646 IKILETPESNSVDAA 660 (1103)
Q Consensus 646 i~iw~~~~~~~~~~~ 660 (1103)
|++|++.+++.+...
T Consensus 373 i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 373 LKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEECCC-------
T ss_pred EEEEECCCCcccccc
Confidence 999999988766543
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=312.63 Aligned_cols=317 Identities=11% Similarity=0.026 Sum_probs=249.0
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 410 (1103)
+.-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence 44567999999999998 799999999999 7554432 45799999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC----
Q 001310 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA---- 486 (1103)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---- 486 (1103)
.++.+.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||+|++||.++ ++..+. |..
T Consensus 65 -----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 4555555554432211 12 5688999999999999 799999999999999544 667777 665
Q ss_pred -ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-------eEEe----cCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310 487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 487 -~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
.|.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. +
T Consensus 130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D 201 (588)
T 2j04_A 130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N 201 (588)
T ss_dssp TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence 499999955 789999999999999999998753 3444 5667799999999999 666654 6
Q ss_pred eeEEEEeCCCCee---EEEEe-cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
+.+++||+.++.. .+.+. +|. ..|.+++|+ ++.+++++ +++|++||+.+++......+| ...+..++|
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~ 273 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPL 273 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEE
T ss_pred CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEe
Confidence 6799999988773 34564 554 789999999 58888887 699999999988874444343 567999999
Q ss_pred --ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310 631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1103)
Q Consensus 631 --s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1103)
+|++..+++++.+|+ ++|.... +++ +||+..+++. |+
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~ 312 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK 312 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence 999999999999999 9998771 223 3777777775 89
Q ss_pred ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec
Q 001310 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1103)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 754 (1103)
++++|+....... ...+...|.+++|||||+.+++++.
T Consensus 313 ~v~lW~~~g~~l~--------~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWNEFN--------NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTTSSS--------SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCcee--------eeccceEEEEEEECCCCCEEEEEEe
Confidence 9999997533211 1123567999999999998887765
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-32 Score=298.21 Aligned_cols=254 Identities=13% Similarity=0.156 Sum_probs=211.7
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC--CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
+.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.+ +.+|.+.|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356789999999999999998 6999999999999999754 33332 7799999999999
Q ss_pred CCC--CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCc--ee
Q 001310 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT 478 (1103)
Q Consensus 405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~ 478 (1103)
+|+ +++||+|+.|++|+|||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ..
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 89999999999999999998742 223367789999999999998 77 89999999999999998764 24
Q ss_pred EEeecCCCceEEEEeeecC-----------CccEEEEEECCCeEEEEEcCCCC----eeEEecCCCccEEEEEEccCC--
Q 001310 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~dg-- 541 (1103)
..+.+|...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6778999999999998752 35799999999999999998766 445778899999999999995
Q ss_pred -CEEEEEecCCCCceeEEEEeCCCCe--eE-EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 542 -RRLFSCGTSKEGESFLVEWNESEGA--IK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
++|++++. ++.|++||+.++. .. ..+. ...+...|.+++|+|++++|++++.||+|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78999876 6679999987643 11 2221 11224789999999999999999999999999976
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-34 Score=323.05 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=226.4
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC--CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+..|.+.|++++|+|||+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 445667999999999998 7899999999999999987 44433 7789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc---eeEEeec-
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~- 483 (1103)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999998873344446788999999999999999 79999999999999999887 4778887
Q ss_pred CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC------------------CCeeEEecCCCccEEEEEEccCCCEEE
Q 001310 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1103)
|...|.+++|++ ++.+|++++.||.|++||+.. .+....+ .+...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 678999999999999999853 2233344 7788999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCee----EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----------
Q 001310 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 611 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------- 611 (1103)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|++++|++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9976 66799999999987 77777777 899999999999998888776666 66654211
Q ss_pred -----------------------------eEEEEcC-----------CCCCCCCceEEEecC-CC---EEEEEECCCeEE
Q 001310 612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1103)
Q Consensus 612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-g~---~l~~~~~dg~i~ 647 (1103)
....... ..+...|.++++.++ +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 014456888886653 33 699999999999
Q ss_pred EEEc
Q 001310 648 ILET 651 (1103)
Q Consensus 648 iw~~ 651 (1103)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.7e-32 Score=309.51 Aligned_cols=289 Identities=16% Similarity=0.259 Sum_probs=244.4
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
..+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 56889999875 678875 8999999999998775422 567889999999999999999999
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeecCCCceEEEEee
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1103)
.||+|+|||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 788999999998875 45 7999999999999998864 4567889999999999985
Q ss_pred ecCCccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccCCCE-EEEEecCCCCceeEEEEeCCCCeeEE
Q 001310 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKR 569 (1103)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1103)
+ ++.++++++.|+.+++|+..+++. ......+...|.+++|+|++.. +++++. ..++.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4 678999999999999999987653 3466778889999999997654 445443 347789999999999998
Q ss_pred EEecccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 788999999999998865 78999999999999999998764 5799999999999999999999999
Q ss_pred EEEcCCCCeeEecc
Q 001310 648 ILETPESNSVDAAG 661 (1103)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1103)
+||+.+..+.....
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-31 Score=329.80 Aligned_cols=212 Identities=18% Similarity=0.302 Sum_probs=185.2
Q ss_pred EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-----ceeEEeecCCCceEEEEeeecCCccEEEEEECCCe
Q 001310 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1103)
Q Consensus 436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1103)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 57899999999999998654 8999999999999998763 45678899999999999965 7789999999999
Q ss_pred EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC
Q 001310 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1103)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1103)
|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999988899999999999999999999999986 5669999987665544444333445889999999986
Q ss_pred --CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310 591 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1103)
Q Consensus 591 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 656 (1103)
..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 579999999999999999999998888764 4699999999999999999999999999987643
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-32 Score=311.85 Aligned_cols=306 Identities=9% Similarity=0.058 Sum_probs=256.8
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc---cccceEeccccccEEEEEEecC----C---CceEEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAP----C---KQISVIT 460 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~v~~~~~s~d----~---~~~~l~s 460 (1103)
.+.+|.+.|.+++|+| ++|++|+.||+|++||+.+++. ......+.+|...|.+++|+|+ + + +|++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s 86 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVAT 86 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEE
Confidence 4789999999999999 8999999999999999998761 1123367799999999999999 8 7 8999
Q ss_pred EcCCCceEEEeCCCCce-----eEEeecC-----CCceEEEEeeec--CCccE-EEEEECCCeEEEEEcCC------CCe
Q 001310 461 CGDDKTIKVWDAVTGSR-----TYSFEGH-----GAPVYSLCPHAK--ENIHF-IFSISVDGKIKAWLYDS------LGA 521 (1103)
Q Consensus 461 ~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~~ 521 (1103)
++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999999987 8889888 599999999732 46778 99999999999999988 555
Q ss_pred eE-----Ee-------cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec---ccccCCceEEEEE
Q 001310 522 RV-----DY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVHF 586 (1103)
Q Consensus 522 ~~-----~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~ 586 (1103)
.. .+ ..+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.. |......+.+++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 44 55 4477889999999999 8888865 66799999999999999988 6111289999999
Q ss_pred cCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCC-----------CCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 587 DTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 587 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.|+.|++||+.
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999999 999999999999998887611 24568999999999999999999999999999
Q ss_pred CCCeeEecc------cc---------------ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310 653 ESNSVDAAG------VL---------------SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1103)
Q Consensus 653 ~~~~~~~~~------~~---------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1103)
+++.+..+. .| ...|.+++++|++..++.+ ..+++++++++.|+.|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~------------~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG------------ADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT------------CTTSCEEEEEETTTEEE
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc------------ccccceEEEecCCCcEE
Confidence 999988888 77 8889999998554322111 12337899999999999
Q ss_pred cccccc
Q 001310 712 VEKPLF 717 (1103)
Q Consensus 712 ~w~~~~ 717 (1103)
+|++..
T Consensus 390 iw~~~~ 395 (397)
T 1sq9_A 390 WFREAG 395 (397)
T ss_dssp EEEEEC
T ss_pred EEEcCC
Confidence 999864
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.2e-32 Score=294.52 Aligned_cols=252 Identities=17% Similarity=0.296 Sum_probs=213.2
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1103)
+.+|.+.|.+++|+|||++||+|+.|++|+|||+.++. ......+.+|.+.|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 77899999999999999999999999999999997542 1233478899999999999864 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccC-----
Q 001310 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1103)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 540 (1103)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998875578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEecCCCCceeEEEEeCCCCe----eEEEEecccccCCceEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001310 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1103)
Q Consensus 541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw 605 (1103)
+++|++++. ++.|++||+.+++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 5669999998765 556777777 899999999984 789999999999999
Q ss_pred ECCCCe---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
|+.++. ....+....+...|.+++|+|+|++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998643 122332233445689999999999999999999999999763
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.6e-32 Score=308.41 Aligned_cols=348 Identities=14% Similarity=0.129 Sum_probs=248.0
Q ss_pred cceeEecccCCcCceEEEecC-CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~sp-dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
......+.+|.+.|++++|+| +++ +|++|+.||.|+|||+.+++.......... .........+|...|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEE
T ss_pred CcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEE
Confidence 345677889999999999999 998 799999999999999999876654221100 000011134699999999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC---CCceEEEEEcCCCceEEEeCCCCcee
Q 001310 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
+|+| ++.+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCccee
Confidence 9999 88899999999999999999886554 23 37778999999884 44 7999999999999999999999
Q ss_pred EEeecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCe-eEEe---------------cCCCccEEEEEEccCC
Q 001310 479 YSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANG 541 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg 541 (1103)
..+.+|...|.+++|++ ++. ++++++.||.|++||++.... ...+ ..+...|.+++|+|++
T Consensus 180 ~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 180 HILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp EEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 99999999999999976 444 699999999999999987652 2233 4567789999999999
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (1103)
++|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..|
T Consensus 258 ~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 258 LHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp SEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred CEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 99999986 55699999999887655443321 0122222223344567778888999999999999999999866
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1103)
Q Consensus 620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1103)
. ..|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. .....
T Consensus 334 ~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~ 387 (408)
T 4a11_B 334 Y--KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFED 387 (408)
T ss_dssp S--SCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred C--CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------cccce
Confidence 4 56999999999999999999999999999988766544322111 1111 12334
Q ss_pred cceeecccccccccccc
Q 001310 700 PEISVEAENKSEVEKPL 716 (1103)
Q Consensus 700 ~l~s~~~d~~i~~w~~~ 716 (1103)
...+.+.++.+++|+..
T Consensus 388 ~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 388 AWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------
T ss_pred eecccCccCceeecCCc
Confidence 45567778999999854
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=315.00 Aligned_cols=330 Identities=10% Similarity=0.032 Sum_probs=248.4
Q ss_pred CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
-...|.+++|+|||+++|+++. |++|+ |...++.+ .+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~l---~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKDI---NCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSCC---SSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--ccccccee---cCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3467889999999999999876 66787 76555443 5666 899999999998 4555555554
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCc
Q 001310 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1103)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 687 (1103)
. ....+.... ...|.+++|||+|.+||+++.||.+++|+... .+..+. |...+
T Consensus 75 ~---~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 Q---QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp C---SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred C---CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 3 222333222 46799999999999999999999999999543 222211 11100
Q ss_pred eEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1103)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~ 767 (1103)
....+.+++|||||++|++++.||+|++|++....
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 12458899999999999999999999999976532
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee---eEEe-cCCC
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS 843 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~~-~~~~ 843 (1103)
... ++. ..+..+.....+|...|.+++|+||| +++++.|++|++||+.+++. .+++ .+|.
T Consensus 163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 100 000 00112111123588999999999999 66666699999999988773 3566 4788
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEE--ccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~s~dg~I~iwd~~~~~~~ 921 (1103)
..|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---- 297 (588)
T 2j04_A 227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---- 297 (588)
T ss_dssp SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence 899999998 37899887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988875 9999999986554 332 333 77899999999999999886
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.7e-32 Score=304.91 Aligned_cols=290 Identities=12% Similarity=0.100 Sum_probs=247.3
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+..|..+|.+++|+||+++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44599999999999999999999999999999999875 113336789999999999999999 899999999999999
Q ss_pred CCCCceeEE--eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccCCCEEE
Q 001310 472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 545 (1103)
Q Consensus 472 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1103)
+.+++.... +..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...+.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998876544 467999999999965 678999999999999999998773 233356788999999999999999
Q ss_pred EEecCCCCceeEEEEeC------------------CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
+++. ++.|++||+ .+++.+..+.+|. ..+.+++|+|+++++++++.||.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 566999995 4678888888776 89999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC--CCe-----------------------------
Q 001310 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS----------------------------- 656 (1103)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~--~~~----------------------------- 656 (1103)
.+++.+..+..+. ..+.+++|+|++++++++ .|+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999999988663 468999999999988887 899999999987 321
Q ss_pred ---e------Eec-cccccceeeeEEecCCceeeeeccCCceEecCCCCCCC---ccceeeccccccccccccc
Q 001310 657 ---V------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 657 ---~------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~~w~~~~ 717 (1103)
. ..+ .+|...|+++++. +++| .++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 0 222 4788888888876 3566 8999999999999999864
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=288.00 Aligned_cols=282 Identities=16% Similarity=0.268 Sum_probs=237.1
Q ss_pred ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1103)
Q Consensus 337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 416 (1103)
.++|+||+++ +||+|. |++|+|||+++|+++.... +.+|...|.+++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 577774 8999999999999876522 5678999999999999999999999
Q ss_pred CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeecCCCceEEEEeee
Q 001310 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 495 (1103)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~ 495 (1103)
||+|++||+.+++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 67899998887665 456 7999999999999998876 45677889999999999854
Q ss_pred cCCccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
++.++++++.||.|++||+.+++. ......+...+.+++++|++..++.... +..++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 668999999999999999987653 3455667778999999998765543322 134778999999988876665
Q ss_pred ecccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310 572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 649 (1103)
... ..+..+.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|+|++|++++.||+|++|
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 543 5799999999999988765 79999999999999999998764 579999999999999999999999999
Q ss_pred EcCCC
Q 001310 650 ETPES 654 (1103)
Q Consensus 650 ~~~~~ 654 (1103)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-31 Score=303.11 Aligned_cols=293 Identities=17% Similarity=0.225 Sum_probs=244.5
Q ss_pred eccCCCccEEEEEECCC----CCEEEEEeCCCeEEEEEecCCCccccceEec--cccccEEEEEEecC----CCceEEEE
Q 001310 391 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 460 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d----~~~~~l~s 460 (1103)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999984 4566666777799999999887655333222 26678999999999 55 8999
Q ss_pred EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe---cCCCccEEEEEE
Q 001310 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 537 (1103)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~ 537 (1103)
|+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+.+++....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999998888877 678889999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec-------------------------ccccCCceEEEEEcCCCCE
Q 001310 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ 592 (1103)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~ 592 (1103)
+|++++|++++. ++.|++||+.+++....+.. ...+...|.+++|+ +++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 999999999986 55699999998765443332 00133889999998 679
Q ss_pred EEEEeCCCcEEEEECCCCee--------------EEEEcCCCCCCCCceEEEecC--CCEEEEEECCCeEEEEEcCCCCe
Q 001310 593 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS 656 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--g~~l~~~~~dg~i~iw~~~~~~~ 656 (1103)
+++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999999999999987643 5666655 346899999999 99999999999999999998753
Q ss_pred ----eEecccc--ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 657 ----VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 657 ----~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
...+..| ...|.+++|+ |+++++++++.|+.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 3366666 6889888887 788999999999999999974
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-31 Score=287.81 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=247.5
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+.+|.+.|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP 87 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence 7899999999999 999999999999999999998875444 6778999999999999999 899999999999999
Q ss_pred CCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCEEEEE
Q 001310 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSC 547 (1103)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~ 547 (1103)
+... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| ++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 8754 667888999999999998 346999999999999999 5667778888999999999998 99999999
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEec-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1103)
+. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..+.
T Consensus 162 ~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~ 229 (313)
T 3odt_A 162 SA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY 229 (313)
T ss_dssp ET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEE
T ss_pred EC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEE
Confidence 86 55699999 5666777776 44 8899999999987 9999999999999999999999988664 4699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1103)
Q Consensus 627 ~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1103)
+++|+|++ .+++++.||.|++||+.+++.+..+..+...+.+++++ |+++ +++++.
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~~ 285 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGSS 285 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEET
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEeC
Confidence 99999999 58899999999999999999999999999999999987 5666 667899
Q ss_pred ccccccccccccCC
Q 001310 707 ENKSEVEKPLFARP 720 (1103)
Q Consensus 707 d~~i~~w~~~~~~~ 720 (1103)
|+.|++|++.....
T Consensus 286 dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 286 DNLVRIFSQEKSRW 299 (313)
T ss_dssp TSCEEEEESCGGGC
T ss_pred CCcEEEEeCCCCce
Confidence 99999999885443
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=310.04 Aligned_cols=301 Identities=13% Similarity=0.204 Sum_probs=233.2
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC------------ccE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 399 (1103)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ...-....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 4678999999999998 799999999999999998763110000 0000011266788 889
Q ss_pred EEEEECCCC--CEEEEEeCCCeEEEEEecCCCccc------------------------------------cc-eEeccc
Q 001310 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQ-LEIDAH 440 (1103)
Q Consensus 400 ~~~~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~-~~l~~h 440 (1103)
.+++|+|++ .+|++++.|++|++||+.++.... .. ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998743210 00 113689
Q ss_pred cccEEEEEEecCCCceEEEEEcCCCceEEEeCCC-CceeE-------EeecCCCceEEEEeeecCCc-cEEEEEECCCeE
Q 001310 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1103)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i 511 (1103)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 54 799999999999
Q ss_pred EEEEcCCCCe----eEEecCCCc------------cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecc
Q 001310 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1103)
Q Consensus 512 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1103)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 8999999999999998863 5699999997 8888888887
Q ss_pred cccCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----------------------
Q 001310 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1103)
Q Consensus 575 ~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1103)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 620 -------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
.....|..++|+|++++|++++.++ +.+|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998876 7777643
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=298.91 Aligned_cols=294 Identities=13% Similarity=0.159 Sum_probs=242.1
Q ss_pred eeccCCCccEEEEEECCCCCEEE-EEeC---CCeEEEEEecCCCccccceEeccccccEEEEEEecC---CCceEEEEEc
Q 001310 390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG 462 (1103)
Q Consensus 390 ~~~~~h~~~V~~~~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~~~l~s~~ 462 (1103)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ +. +|++++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999996655 5555 89999999998864332 23379999999999999 57 799999
Q ss_pred CCCceEEEeCCCCc-eeEEeecCCCceEEEEeee----cCCccEEEEEECCCeEEEEEcCCCC-eeEEecCCCc----cE
Q 001310 463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC 532 (1103)
Q Consensus 463 ~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~i 532 (1103)
.|+.|++||+.+++ .+..+.+|...|.++++.+ ++++.+|++++.||.|++||+.+.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999998 8899999999999997743 5678899999999999999999887 5666655443 78
Q ss_pred EEEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC---CCCEEEEEeCCCcEEEE
Q 001310 533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW 605 (1103)
Q Consensus 533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw 605 (1103)
.+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..+.+++|+| +++++++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 8888 7899999999976 56799999999987544 4444 7899999999 99999999999999999
Q ss_pred ECCCCeeEEEEc---CCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC-------------------CeeEeccc
Q 001310 606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV 662 (1103)
Q Consensus 606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~ 662 (1103)
|+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+ +.+..+..
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 998876554443 112345799999999998 8999999999999999754 24566777
Q ss_pred cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce-eeccccccccccccc
Q 001310 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPLF 717 (1103)
Q Consensus 663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~~w~~~~ 717 (1103)
|...|.+++|+ |++++++ +++.|+.|++|++..
T Consensus 320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECCC
Confidence 88888888886 7888888 899999999999863
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.6e-32 Score=297.75 Aligned_cols=253 Identities=15% Similarity=0.205 Sum_probs=205.0
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp- 406 (1103)
.++.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 45679999999999999998 699999999999999988753211 12678999999999987
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCce---eEE
Q 001310 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1103)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---~~~ 480 (1103)
++++||+|+.|++|++||+.+++. .....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 489999999999999999988642 223367899999999999998 66 799999999999999987642 355
Q ss_pred eecCCCceEEEEeeecC---------------CccEEEEEECCCeEEEEEcCCCC---eeEEecCCCccEEEEEEccCC-
Q 001310 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~dg- 541 (1103)
+.+|...|.+++|++.. ++.+|++++.|++|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 14689999999999999997552 445677888999999999987
Q ss_pred ---CEEEEEecCCCCceeEEEEeCCCC---e-eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
++|++++. ++.|++|++.+. . ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 677999998763 1 123344555 889999999999999999999999999976
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-30 Score=299.65 Aligned_cols=282 Identities=19% Similarity=0.252 Sum_probs=242.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
..+.|+||++ ..||+|. |++|+|||..+|+.... ..+.+|...|++++|+|||+ +|++|+.||+|++||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 3567999986 4787775 89999999999976542 24567888999999999999 899999999999999999999
Q ss_pred eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1103)
+..+.+|...+.++++ ++.++++|+.|+.+++||...... ...+..+...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 346999999999999999887554 4577889999999999999999999986 566
Q ss_pred EEEEeCCCCee----EEEEecccccCCceEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
+++|+..+++. +.....+. ..|.+++|+|.+..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987753 34455555 899999999986554 44 3579999999999999999887663 478999
Q ss_pred EecCCCEEEEEE--CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310 630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1103)
Q Consensus 630 ~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1103)
|+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ |||+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999997 789999999999
Q ss_pred cccccccccccCC
Q 001310 708 NKSEVEKPLFARP 720 (1103)
Q Consensus 708 ~~i~~w~~~~~~~ 720 (1103)
++|++|++....+
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999865433
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.4e-31 Score=302.15 Aligned_cols=280 Identities=21% Similarity=0.308 Sum_probs=241.8
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
....+|...|.|++| |++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| +
T Consensus 127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~ 182 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D 182 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence 344567778999888 777 689999999999999999987765 7789999999999 8
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee---EEeecC
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH 484 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~ 484 (1103)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.++..+ ..+.+|
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 8999999999999999999987655 6789999999999974 4 7999999999999999988766 677899
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1103)
...|.++++ ++.++++++.||.|++||+.+++....+..+...+.++++ +++++++++. ++.|++||+.+
T Consensus 256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~ 325 (435)
T 1p22_A 256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC 325 (435)
T ss_dssp SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence 999999988 4579999999999999999999999999999999999988 5789999876 56699999999
Q ss_pred CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------eEEEEcCCCCCCCCceEEEecCCC
Q 001310 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT 635 (1103)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~g~ 635 (1103)
++.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..| ...|.+++| +++
T Consensus 326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~ 396 (435)
T 1p22_A 326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEF 396 (435)
T ss_dssp CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSS
T ss_pred CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCC
Confidence 99999999887 89999998 67899999999999999997766 77777766 446899999 688
Q ss_pred EEEEEECCCeEEEEEcCCCCee
Q 001310 636 LLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
+|++++.||.|++||+.+....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEECCSSSEEEEEC-------
T ss_pred EEEEEeCCCEEEEEECCCCCCc
Confidence 9999999999999999876543
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.3e-31 Score=294.88 Aligned_cols=287 Identities=9% Similarity=0.053 Sum_probs=242.1
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++..... ..+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence 44568999999999999998 6899999999999999887721110 013469999999999999
Q ss_pred CC-EEEEEeCCCeEEEEEe-cCCCccccceEecc--ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC---------
Q 001310 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1103)
Q Consensus 408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------- 474 (1103)
++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87653 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCe--eEEecCCCccEEEEEEcc-CCCEEEEEecC
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~ 550 (1103)
++++..+. |...|.+++|++ ++ +++++.|+.|++||+.. ... ......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777776 899999999964 33 99999999999999988 443 335556777899999999 9999999986
Q ss_pred CCCceeEEEEeCCCC------eeEEEEecccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
++.|++|++... +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 667999999887 77788887751 124899999999999999999999999999999999988876
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCe-EEEEE
Q 001310 619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1103)
Q Consensus 619 ~~~~~~v~~v~~s~~g~~l~~~~~dg~-i~iw~ 650 (1103)
+. ...|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence 51 24578888 99999999999998 44444
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.5e-31 Score=295.78 Aligned_cols=294 Identities=17% Similarity=0.203 Sum_probs=242.1
Q ss_pred CccceeEecccCCcCceEEEecCC---CceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1103)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1103)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 456778899999999999999999 56 799999999999999998 444311 1567999
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEE--ecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
.|.+++|+|++++|++++.||.|++||+.+++... +.+|...|.+++| +|++. ++++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999876443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--CCCccEEEEEEccCCCE----EEEEec
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~ 549 (1103)
+.+..+..+. .+.++.+. ...+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998765 55555553 2478999999999999998876554332 23445667777666554 888775
Q ss_pred CCCCceeEEEEeCCCC---eeEEEEeccccc---------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310 550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
++.|++||+... ..+..+.+|... ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 667999999987 556677776610 1169999999999999999999999999999999999888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
.+ ...|.+++|+|+|++|++++.|+..+.|+.
T Consensus 313 ~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QL--DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CC--SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CCCceEEEECCCCCeEEEEecccccccccc
Confidence 65 456999999999999999999875555443
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.8e-32 Score=309.07 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=198.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC--CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~--~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
.|.++|.+++|+|||++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 36789999999999999999999999999999987 4443 5779999999999999998 799999999999999
Q ss_pred CCCCc---eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecC-CCccEEEEEEccCCCEE
Q 001310 472 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 472 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~dg~~l 544 (1103)
+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++..+. ...+.. +...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987 6778889999999999965 678999999999999999998773 556666 88999999999999999
Q ss_pred EEEecCCCCceeEEEEeCC------------------CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001310 545 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 606 (1103)
++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++||
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99986 5669999985 34455555 555 8999999999999999999999999999
Q ss_pred CCCCee----EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 607 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 607 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 5666655 3468999999999999999877766 66654
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.4e-30 Score=297.38 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=242.2
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~las 413 (1103)
....+++++|+...++++|+.||.|+|||+........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35667999999876677789999999999966432210 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEecCCCcc----ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe--ecCCCc
Q 001310 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~ 487 (1103)
|+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 234478899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cCCCcc-EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
|.+++|++ ++.+|++++.||.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 7789999999999999999998888877 566654 899999999999988732 123788999999987
Q ss_pred ee-EEEEe-cccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee-EEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310 566 AI-KRTYQ-GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1103)
Q Consensus 566 ~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 641 (1103)
+. +.... .+. ..+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++
T Consensus 256 ~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-- 330 (402)
T 2aq5_A 256 EEPLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-- 330 (402)
T ss_dssp SSCSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--
T ss_pred cCCceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--
Confidence 64 33333 233 67999999999999975 55799999999998874 545544434467999999999988774
Q ss_pred CCCeEEEEEcCCCC
Q 001310 642 NENRIKILETPESN 655 (1103)
Q Consensus 642 ~dg~i~iw~~~~~~ 655 (1103)
.++.+++|++.++.
T Consensus 331 ~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 331 KCEIARFYKLHERK 344 (402)
T ss_dssp GTEEEEEEEEETTE
T ss_pred cceeEEEEEcCCCc
Confidence 56799999998764
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.8e-31 Score=291.43 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=204.8
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1103)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|...|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886421 23368899999999999863 67 799999999999
Q ss_pred EEeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccC---
Q 001310 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1103)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1103)
+||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||+|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998876688999999999999999987643 2344567778999999997
Q ss_pred --------------CCEEEEEecCCCCceeEEEEeCCCC---eeEEEEecccccCCceEEEEEcCCC----CEEEEEeCC
Q 001310 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1103)
Q Consensus 541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d 599 (1103)
+++|++++. ++.|++||+..+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 467888765 667999999765 4566677776 899999999986 789999999
Q ss_pred CcEEEEECCCC---e-eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 600 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 600 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11223323 34689999999999999999999999999763
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=1.7e-30 Score=290.85 Aligned_cols=306 Identities=10% Similarity=0.100 Sum_probs=227.1
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp- 406 (1103)
+.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASP 68 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCG
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCC
Confidence 56789999999999999998 6899999999999999877533211 112668999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCcc------ccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCce
Q 001310 407 -DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~------~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
|+++|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTC
T ss_pred CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHH
Confidence 6999999999999999999887421 234467899999999999999 88 899999999999999998876
Q ss_pred eEEee-------------cCCCceEEEEeeec-CCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccCC
Q 001310 478 TYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG 541 (1103)
Q Consensus 478 ~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg 541 (1103)
+..+. .|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 65443 67888999999764 1367999999999998888777665 45677788899999999998
Q ss_pred ----CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE----eCCCcEEEEECCCCeeE
Q 001310 542 ----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQLL 613 (1103)
Q Consensus 542 ----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~ 613 (1103)
++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.+
T Consensus 227 ~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 227 GRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp SCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEEE
T ss_pred CCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 78998876 5669999998775544433322 233333334433333332 34455667777777778
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec
Q 001310 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1103)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1103)
..+..| ...|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus 300 ~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 300 SEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 888766 446999999999999999999999999999988665544
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.1e-30 Score=291.82 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=242.2
Q ss_pred ccCCCcc--EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310 392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1103)
Q Consensus 392 ~~~h~~~--V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1103)
..+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence 3355554 45566664 56888889999999999998755421 224889999999999999 8999999999999
Q ss_pred EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1103)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1103)
||+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..+...|.+++|+|++++|++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999999999999999999998 346999999999999999994 555668888999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
. ++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+
T Consensus 237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v 306 (401)
T 4aez_A 237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV 306 (401)
T ss_dssp T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence 6 5569999999999999888877 89999999998755554 44 6999999999999999888654 458
Q ss_pred ceEEEecCCCEEEEEE--CCCeEEEEEcCCCCeeE--eccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310 626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1103)
Q Consensus 626 ~~v~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1103)
.+++|+|+++++++++ .||.|++|++.++.... .+.+|...+.+++++ |++.++
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l 364 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL 364 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence 9999999999999954 89999999999865444 466888889888886 788999
Q ss_pred eeeccccccccccccccC
Q 001310 702 ISVEAENKSEVEKPLFAR 719 (1103)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~ 719 (1103)
++++.|+.|++|++..++
T Consensus 365 ~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 365 STAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEECTTSEEEEEECCC--
T ss_pred EEEeCCCcEEEEECCCCc
Confidence 999999999999987543
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.4e-30 Score=297.80 Aligned_cols=254 Identities=14% Similarity=0.226 Sum_probs=208.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc--------cccceEecccc------------ccEEEEEEecCC
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC 453 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~~~~s~d~ 453 (1103)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999998752 11244678998 889999999998
Q ss_pred --CceEEEEEcCCCceEEEeCCCCcee---------------------------------------EE-eecCCCceEEE
Q 001310 454 --KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSL 491 (1103)
Q Consensus 454 --~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~ 491 (1103)
. .+++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998775432 12 36799999999
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--------ecCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+|++ ++.+|+++ .||.|++||+........ +..+...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9966 67899998 899999999985443332 45778899999999999 99999986 566999999
Q ss_pred CCCee----EEEEecccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCC----
Q 001310 563 SEGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE---- 624 (1103)
Q Consensus 563 ~~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 624 (1103)
.+++. +..+..+.. +...|.+++|+|++++|++++. +.|++||+.. ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 677877660 0128999999999999999999 9999999997 888888876643211
Q ss_pred ---------CceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310 625 ---------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 625 ---------v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988765
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=278.77 Aligned_cols=278 Identities=19% Similarity=0.248 Sum_probs=237.1
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1103)
Q Consensus 399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1103)
.++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+.+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 4679999986 77776 5899999999999866532 4567888999999999999 8999999999999999999999
Q ss_pred EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887654 4567888899999999999999999986 5669
Q ss_pred EEEeCCCCeeE----EEEecccccCCceEEEEEcCCCCEEE---EEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310 558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1103)
Q Consensus 558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1103)
++||+.+++.. .....+. ..|..++++|++..++ +++.+++|++||............. ..+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred eEEECCCCcccccceeeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence 99999887532 2333333 7899999999876543 4668899999999998887776544 34789999
Q ss_pred ecCCCEEEEEE--CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310 631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1103)
Q Consensus 631 s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1103)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|++++|+ ||++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999988765 78999999999999999999999999999997 7899999999999
Q ss_pred ccccccccc
Q 001310 709 KSEVEKPLF 717 (1103)
Q Consensus 709 ~i~~w~~~~ 717 (1103)
+|++||+..
T Consensus 307 ~v~iWd~~~ 315 (318)
T 4ggc_A 307 TLRLWRCFE 315 (318)
T ss_dssp EEEEECCSC
T ss_pred eEEEEECCC
Confidence 999999863
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-30 Score=289.47 Aligned_cols=256 Identities=17% Similarity=0.298 Sum_probs=217.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1103)
+.+|.+.|.+++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998432 1233367899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEcc------
Q 001310 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1103)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1103)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999876447899999999999999998874 3446677888999999999
Q ss_pred -------CCCEEEEEecCCCCceeEEEEeCCCCe----eEEEEecccccCCceEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001310 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1103)
Q Consensus 540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw 605 (1103)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 5569999998764 345566666 89999999999 8999999999999999
Q ss_pred ECCCCe---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++......
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 999864 3333343334567899999999999999999999999999865433
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.4e-29 Score=292.18 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=239.1
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357788998887 89999999999999999999987554 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee---EEecCCCccEEEEEEccCCCEEEEEec
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 359999999999999999987765 567788889999998 7889999976
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
++.|++||+.+++.+..+.+|. ..+.++.+ +++.+++|+.||.|++||+.+++.+..+..|. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 6679999999999999999887 88999998 46799999999999999999999999998664 4688888
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCC---------eeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcc
Q 001310 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1103)
| +++++++|+.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78899999999999999997665 677788888888777663 677
Q ss_pred ceeeccccccccccccccC
Q 001310 701 EISVEAENKSEVEKPLFAR 719 (1103)
Q Consensus 701 l~s~~~d~~i~~w~~~~~~ 719 (1103)
+++++.||.|++|++....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEECCSSSEEEEEC-----
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987543
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-30 Score=289.53 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=215.8
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC--CeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+.. +.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEE
Confidence 4577899999999999999998 6899999999999999843 33322 678999999999
Q ss_pred ECCC--CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCc--e
Q 001310 404 WSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--R 477 (1103)
Q Consensus 404 ~spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~ 477 (1103)
|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 99999999999999999998752 123367789999999999999 88 89999999999999999874 4
Q ss_pred eEEeecCCCceEEEEeeecC-----------CccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccC--
Q 001310 478 TYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN-- 540 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d-- 540 (1103)
...+.+|...|.+++|++.. ++.++++++.||.|++||+..... ...+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999997742 578999999999999999987653 3466778889999999999
Q ss_pred -CCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310 541 -GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 541 -g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
+++|++++. ++.|++||+.++.. .........+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 899999876 56699999988742 12222222234789999999999999999999999999987543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=280.82 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.7
Q ss_pred ccCCCccEEEEEECCC---CCEEEEEeCCCeEEEEEecC-CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1103)
+.+|.+.|.+++|+|+ |++||+|+.||.|++||+.+ +..+ ...+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4332 136778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+.+.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5579999999999877888999999999999999999988887777654 555555554 466666
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---eeEEEEcCCC
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1103)
+. ++.+.+|++............. ....+.++.+.++... +++++.||.|++|++... ..+..+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5569999998765443322211 2345666666665544 999999999999999987 4556665553
Q ss_pred CC----------CCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1103)
Q Consensus 621 ~~----------~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 690 (1103)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCCCccceeecccccccccccc
Q 001310 691 NEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
|+++++++++.|+..+.|++.
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 788999999999877777754
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.1e-29 Score=279.76 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=239.3
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
..+|.+.|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. +|++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5579999999999999999999999999999999987632223356689999999999999872 388899999999999
Q ss_pred C-CCCceeEEeec--CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC---------CCeeEEecCCCccEEEEEEcc
Q 001310 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1103)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 539 (1103)
+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+.+ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55444444 777899999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCC-Cee--EEEEecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001310 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~----- 610 (1103)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 56799999988 543 22333344 7899999999 9999999999999999999887
Q ss_pred -eeEEEEcCCCC-------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccc-ccceeeeEEecCCceeee
Q 001310 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1103)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~ 681 (1103)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776643 337899999999999999999999999999999999999888 88887766 3
Q ss_pred eccCCceEecCCCCCCCccceeeccccc-cccccc
Q 001310 682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 715 (1103)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~~w~~ 715 (1103)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5778899999998 777764
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.5e-29 Score=281.37 Aligned_cols=296 Identities=11% Similarity=0.122 Sum_probs=222.3
Q ss_pred eeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc-ccceEeccccccEEEEEEec--CCCceEEEEEcCCCc
Q 001310 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKT 466 (1103)
Q Consensus 390 ~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~ 466 (1103)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 347899999999999999999999999999999999976432 33446779999999999999 577 8999999999
Q ss_pred eEEEeCCCC---------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe------------
Q 001310 467 IKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------------ 525 (1103)
Q Consensus 467 i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------ 525 (1103)
|++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+.+.+....+
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999987 56788899999999999987643789999999999999999887644322
Q ss_pred -cCCCccEEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCC----CEEEE
Q 001310 526 -DAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILA 595 (1103)
Q Consensus 526 -~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 595 (1103)
..+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|. ..|.+++|+|++ ++|++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEE
Confidence 145668999999997 899999876 56688888777765 55666666 899999999998 79999
Q ss_pred EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE----ECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1103)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~ 671 (1103)
++.||.|++||+..+......... .........++....+..+ .....+.+|+....+.+..+.+|...|++++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EcCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 999999999999876554433222 1123333344444333333 2344556666666677888889999999999
Q ss_pred EecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1103)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1103)
|+ |+++++++++.|+.|++|++...
T Consensus 314 ~s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 314 WN----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EC----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred Ec----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 97 78899999999999999998753
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=283.95 Aligned_cols=301 Identities=12% Similarity=0.010 Sum_probs=234.6
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCC---eeeeeeeeEeecccc----------------------------
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC---------------------------- 383 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 383 (1103)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 3899999999999 56655 46899999999998 4432 221100
Q ss_pred ------------ccceeeeeccCCCccEEEEEECCCCCEE-EEEeCCCeEEEEEec--CCCccccceEeccccccEEEEE
Q 001310 384 ------------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLA 448 (1103)
Q Consensus 384 ------------~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~v~~~~ 448 (1103)
..........+|.+.|.+++|+|||++| |+++.||.|+|||+. +++.+.... ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111234677789999999999996 889999999999999 776555221 125678999999
Q ss_pred EecCCCceEEEEEcCCCceEEEeCCCCceeE----EeecCCCceEEEEeeec-CCccEEEEEECCCeEEEEEcCCCCeeE
Q 001310 449 FSAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARV 523 (1103)
Q Consensus 449 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 523 (1103)
|+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 78899999999999774 226899999999999999999888777
Q ss_pred E-ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc----------------------ccCCc
Q 001310 524 D-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNS 580 (1103)
Q Consensus 524 ~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~ 580 (1103)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788999999999 9999999985 6679999999999888886431 12357
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCC---eeEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCeEEE
Q 001310 581 VSVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKI 648 (1103)
Q Consensus 581 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------dg~i~i 648 (1103)
+..++|+|+++++++++ .++.|++|++ ..+ +.+..+..+ ..+.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 89999999999999998 8999999999 555 666777665 45899999996533333332 455788
Q ss_pred EEcCC
Q 001310 649 LETPE 653 (1103)
Q Consensus 649 w~~~~ 653 (1103)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.4e-27 Score=269.81 Aligned_cols=279 Identities=11% Similarity=0.103 Sum_probs=228.5
Q ss_pred eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE-EEEeCCCeEEEEEec
Q 001310 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH 426 (1103)
Q Consensus 348 ~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~iwd~~ 426 (1103)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|||++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999987754 3344 458999999999987 566789999999999
Q ss_pred CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE-EEE
Q 001310 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 505 (1103)
Q Consensus 427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 505 (1103)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|++ ++..+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 987554 444444 8999999999994 3456777899999999999998888754 4678888855 56666 788
Q ss_pred ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEE
Q 001310 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1103)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1103)
+.++.|++||+.+++....+..+ ..+.+++|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~ 206 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIA 206 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceE
Confidence 88999999999988877776654 45689999999999865542 2567999999999888777643 4789999
Q ss_pred EcCCCCEEEEEe---CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEecc
Q 001310 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 586 ~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+.
T Consensus 207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999987 68999999999999988887653 36889999999987 566789999999999998877766
Q ss_pred cccc
Q 001310 662 VLSD 665 (1103)
Q Consensus 662 ~~~~ 665 (1103)
.+..
T Consensus 284 ~~~~ 287 (391)
T 1l0q_A 284 VGKN 287 (391)
T ss_dssp CSSS
T ss_pred CCcC
Confidence 5544
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-28 Score=275.31 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=216.1
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..++++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEE
Confidence 34456789999999999999998 688988765 789999887655431 1125788999
Q ss_pred CCCCCEEE-EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEee
Q 001310 405 SPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFE 482 (1103)
Q Consensus 405 spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 482 (1103)
++++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEec
Confidence 99998885 56778999999999987655 443 66789999998864 3333 3789999999998 7776665
Q ss_pred cCCCceEEEEeeecCCccEEEE--EECCCeEEEEEcCCCC----------------eeEEecCCCccEEEEEEccCCCEE
Q 001310 483 GHGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l 544 (1103)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 5 333444543 35555 6899999999998765 256788999999999999999999
Q ss_pred EEEecCCCCcee-EEEEeCCCCeeEEEEe-c-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEE---
Q 001310 545 FSCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTI--- 616 (1103)
Q Consensus 545 ~~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~--- 616 (1103)
++++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+... ..+
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~ 283 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW 283 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence 99986 776 9999999999999998 5 66 89999999999999999999999999999765321 111
Q ss_pred ---------------cCC-CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310 617 ---------------DAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 617 ---------------~~~-~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
... ........++|+++++++++++.||.+++|++..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000 11122467999999999999999999999987643
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2e-27 Score=249.41 Aligned_cols=294 Identities=14% Similarity=0.135 Sum_probs=206.3
Q ss_pred cEEEEEE-ecCCCceEEEEEcCCCceEEEeCCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310 443 NVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1103)
Q Consensus 443 ~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1103)
.+.++-| .++.+.+.+++++ ...|++|+..++ ++++++.+|..+|..+.+.|+.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 3556656 3455666778887 558999999999 8999999999999999997654332222211
Q ss_pred CCeeEEecCCCccEEEEEEccC----CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEE
Q 001310 519 LGARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1103)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1103)
..+...|.+++++|| ++.+++++. .+.+|++.+++ .+.
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~ 149 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVS 149 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEE
Confidence 123457889999999 999998753 26667543333 333
Q ss_pred EEe--CCCcEEEEEC-CCCeeEEEEcCCCCCCCCceEEEec---CCCEEEEEECCCeEEEEEcCCCCeeEecccccccee
Q 001310 595 AAG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 668 (1103)
Q Consensus 595 ~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~ 668 (1103)
+++ .|+.|++|++ .+|+.+..+..+. ..+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--- 224 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMP--PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--- 224 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECC--CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCC--CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc---
Confidence 322 4777777777 4466666666664 4578899999 789999999999999999999988877653221
Q ss_pred eeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcE
Q 001310 669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748 (1103)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 748 (1103)
+...+.+++|+|+|..
T Consensus 225 ----------------------------------------------------------------~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 225 ----------------------------------------------------------------YQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------------------------------------------------------------CCCEEEEEEETTEE
T ss_pred ----------------------------------------------------------------ceeeeEEEEECCCCCE
Confidence 1235677889999987
Q ss_pred EEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEE
Q 001310 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISL 827 (1103)
Q Consensus 749 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~i 827 (1103)
+++++.+.. +| .+++++ |++|++
T Consensus 241 lvs~s~~~~--~w------------------------------------------------------~laSGs~D~tIkl 264 (356)
T 2w18_A 241 FIVLSHPCA--KE------------------------------------------------------SESLRSPVFQLIV 264 (356)
T ss_dssp EEEEC--------------------------------------------------------------------CCEEEEE
T ss_pred EEEeccCCC--cc------------------------------------------------------eeeccCCCcEEEE
Confidence 777664311 11 345665 788999
Q ss_pred EEcCCceeeEEe-----cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEE-EEEEccCCCEE
Q 001310 828 YIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNIL 901 (1103)
Q Consensus 828 wd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l 901 (1103)
||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|.+.+. .++|||||++|
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 999999887665 355555444444 467999999999999999999999999999988665 58999999999
Q ss_pred EEEeCCCeEEEEEc
Q 001310 902 VSSGGDAQIFVWDV 915 (1103)
Q Consensus 902 ~s~s~dg~I~iwd~ 915 (1103)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.9e-28 Score=253.40 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=202.1
Q ss_pred EEEEEECCCeEEEEEcCCC---CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1103)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 712 (1103)
.++++++ ..|++|+..++ +.+.+..++..+|..+.+.|+... |+...-
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~------ 106 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL------ 106 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE------
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee------
Confidence 5666665 68999999998 788899999999998888754322 221111
Q ss_pred ccccccCCccceeeeccCccccccEEEEEEecC----CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1103)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1103)
..-+...|++++++|+ ++.++.++.+ +.+|++
T Consensus 107 -----------------~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 107 -----------------GNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp -----------------CSSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred -----------------ccccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 0125578999999999 9988887744 555542
Q ss_pred CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc---CCeEEEEEc-CCceeeEEecCCCCCeeEEEEcC--CCCCEEEEE
Q 001310 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 862 (1103)
Q Consensus 789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg 862 (1103)
++++++.++. |+.|++|++ .+++.+..+..|...++.++|++ +++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3566666654 788999998 45888888888888888888887 467899999
Q ss_pred eCCCeEEEEEcCCceeEEEeccCC---CCEEEEEEccCCCEE------------EEEeCCCeEEEEEcCCCceeeeeeee
Q 001310 863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1103)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l------------~s~s~dg~I~iwd~~~~~~~~~~~~~ 927 (1103)
+.|++|+|||+.+|+++.++.+|. ..+.+++|||||+++ ++|+.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 467788999999886 66888999999999998765533333
Q ss_pred cCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeE-EEEEccCCCEEEEEecCCcEEEE
Q 001310 928 TPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus 928 ~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
.+.+|.. .+. ..+.++.++|++ .|++|+|||+.+++++.+ +.+|...+. .++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3455543 333 333348888885 799999999999999988 567766554 68999999999999999999999
Q ss_pred eC
Q 001310 1006 EA 1007 (1103)
Q Consensus 1006 d~ 1007 (1103)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.2e-26 Score=264.20 Aligned_cols=328 Identities=11% Similarity=0.131 Sum_probs=252.8
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE-EEEECCCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1103)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999999999999987754 78888855 66665 677799999999999888877776555 89999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEE
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 614 (1103)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 25679999999999888877543 68999999999988 677889999999999999988
Q ss_pred EEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCC
Q 001310 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1103)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1103)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987653221110
Q ss_pred CCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccc
Q 001310 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1103)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 773 (1103)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc----CCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1103)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1103)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122345566677776666654 5788999998888888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccCCCCEE---EEE------------EccCC----------CEEEE
Q 001310 850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLV------------FSDAL----------NILVS 903 (1103)
Q Consensus 850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~------------~s~dg----------~~l~s 903 (1103)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+.+. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999988877655421 122 32221 34566
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310 904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1103)
Q Consensus 904 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 953 (1103)
.+.|..+++|++.+|.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998866211 1 1224689999998875
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-29 Score=308.85 Aligned_cols=260 Identities=13% Similarity=0.152 Sum_probs=212.3
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 467899999999999999998 689999999999999984432211 12678999999999999
Q ss_pred C--CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCc--eeEE
Q 001310 407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS 480 (1103)
Q Consensus 407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 480 (1103)
+ +++|++|+.||+|++||+.+++. .....+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 89999999999999998873 4566
Q ss_pred eecCCCceEEEEeeecC-----------CccEEEEEECCCeEEEEEcCCCC----eeEEecCCCccEEEEEEccC---CC
Q 001310 481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR 542 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d---g~ 542 (1103)
+.+|...|.+++|++.. ++.++++|+.||.|++||+.+.. ....+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999998742 56799999999999999998774 34467788999999999999 89
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeeE--EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
++++++. ++.|++||+.+++.. ........+...|.+++|+|+++++++++.||.|++|++..+.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 566999999886421 1122222234789999999999999999999999999998643
No 117
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.5e-28 Score=278.81 Aligned_cols=285 Identities=13% Similarity=0.146 Sum_probs=233.1
Q ss_pred cEEEEEECCCCCEEE-EEeCCCeEEEEEecCCCc-cccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCC
Q 001310 398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 398 ~V~~~~~spdg~~la-s~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
....++++|+...++ +++.||.|+||++..... ......+.+|...|.+++|+| ++. +|++|+.||+|++||+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688998876554 578899999999965432 233445779999999999999 787 899999999999999998
Q ss_pred C-------ceeEEeecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcCCCCeeEEe--cCCCccEEEEEEccCCCEE
Q 001310 475 G-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 475 ~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~l 544 (1103)
+ +++..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+++....+ ..+...|.+++|+|++++|
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 8 67889999999999999976 44 59999999999999999999888888 7889999999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEE-ecccccCCceEEEEEcCCCCEEEEE---eCCCcEEEEECCCCee-EEEEcCC
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDAG 619 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~ 619 (1103)
++++. ++.|++||+++++.+..+ .+|. ...+..+.|+|++.++++| +.|+.|++||+.+++. +......
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 99986 667999999999999888 6666 2348999999999999998 7999999999998764 3333322
Q ss_pred CCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCe-eEeccc--cccceeeeEEecCCceeeeeccCCceEecCCCC
Q 001310 620 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1103)
Q Consensus 620 ~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1103)
+...+.+++|+|+++++++++ .|+.|++|++.+++. +..+.. +...+.+++|+
T Consensus 266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s---------------------- 322 (402)
T 2aq5_A 266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM---------------------- 322 (402)
T ss_dssp -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC----------------------
T ss_pred -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe----------------------
Confidence 234589999999999997554 799999999998874 444444 34778888887
Q ss_pred CCCccceeeccccccccccccc
Q 001310 696 EDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
|++.++++ .++.+++|++..
T Consensus 323 p~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 323 PKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp CGGGSCGG--GTEEEEEEEEET
T ss_pred ccccccee--cceeEEEEEcCC
Confidence 56666664 456899999863
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.2e-27 Score=264.82 Aligned_cols=291 Identities=10% Similarity=0.112 Sum_probs=208.7
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
+|++.+.+.+.....|. ..|.+++|+|++++|++|+.++ +++|+..+++.......+ .+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~~~h~---~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS---NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------C---CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCC---CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEE
Confidence 45566666666666666 8999999999999999888765 789999988777665433 367889999888874
Q ss_pred -EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 639 -VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 639 -~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
+++.|+.|++||..+++.+..+.
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-------------------------------------------------------- 98 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-------------------------------------------------------- 98 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE--------------------------------------------------------
T ss_pred EEECCccEEEEEECCCCcEEEEEE--------------------------------------------------------
Confidence 56778999999998876554432
Q ss_pred cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC-ccccccccccccCCeeecCCCCCceeeccC
Q 001310 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN-DLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1103)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1103)
+...|.++.++++. +++ ..++.+++|++... .. +....
T Consensus 99 ---------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~----------------------~~~~~- 137 (355)
T 3vu4_A 99 ---------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKR----------------------ITDDI- 137 (355)
T ss_dssp ---------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCB----------------------SSCCE-
T ss_pred ---------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCcee----------------------eEEec-
Confidence 22356677777664 222 34678888887653 11 11100
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEE--c-CCeEEEEEcCCce----------------eeEEecCCCCCeeEEEEcCCCCC
Q 001310 797 TDSNSQEAVPCFALSKNDAYLFSA--S-GGVISLYIVMTFK----------------TILTIMPPSPTATSLAFNPHDNN 857 (1103)
Q Consensus 797 ~~~~~~~~v~~l~~s~d~~~l~~~--~-dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~d~~ 857 (1103)
. +...+++++ .+++++ + +|.|++||+.+++ .+..+.+|...|++++|+| +++
T Consensus 138 ----~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~ 208 (355)
T 3vu4_A 138 ----R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSD 208 (355)
T ss_dssp ----E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSS
T ss_pred ----c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCC
Confidence 1 334566777 666664 3 7999999998765 2678899999999999999 899
Q ss_pred EEEEEeCCCe-EEEEEcCCceeEEEec-c-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeec------
Q 001310 858 VIAIGMDDST-ILIYNARSSEVISKLE-G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT------ 928 (1103)
Q Consensus 858 ~lasg~~dg~-v~iwd~~~~~~~~~l~-~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------ 928 (1103)
+||+|+.||+ |++||+.+++++..+. + |.+.|.+++|+|||++|++++.|++|++||+..+.......+..
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9999999998 9999999999999998 6 99999999999999999999999999999998754322111110
Q ss_pred ------------CCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC
Q 001310 929 ------------PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1103)
Q Consensus 929 ------------~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~ 966 (1103)
.... ......++|++||++|+++ .||.+++|++..
T Consensus 289 ~~~~~~~~~~~~~~~~---~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDK---HVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCSSCSEEEECCCCT---TCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccccceeEEEeccCC---CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 1110 1134779999999999996 899999998754
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=303.74 Aligned_cols=255 Identities=17% Similarity=0.300 Sum_probs=215.1
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1103)
++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.+.|.+++|+|+ ++ ++++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 377899999999999999999999999999999998532 2333478899999999999988 77 899999999999
Q ss_pred EEeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEcc-----
Q 001310 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA----- 539 (1103)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 539 (1103)
+||+.+++ .+..+.+|...|.+++|++..++..+++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888899999999999876447899999999999999998873 4456677888999999999
Q ss_pred --------CCCEEEEEecCCCCceeEEEEeCCCC----eeEEEEecccccCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 001310 540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI 604 (1103)
Q Consensus 540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i 604 (1103)
++.++++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999986 566999999877 4556667766 89999999999 899999999999999
Q ss_pred EECCCCeeE---EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310 605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1103)
Q Consensus 605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~ 655 (1103)
||+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999886421 112222344578999999999999999999999999998653
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.1e-26 Score=268.42 Aligned_cols=300 Identities=12% Similarity=0.041 Sum_probs=231.6
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccce--EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|...|.+++|+++++ ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999887553211 2457888999999999998 899999999999999999
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEE-EEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC-
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 552 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~- 552 (1103)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+.+++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 55666 4555899999999998877666655 346899999999999998874321
Q ss_pred ---CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310 553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1103)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1103)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998877653 23 478899999999866 45689999999999999988888643 347899
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1103)
Q Consensus 629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1103)
+|+|+|+++++++.+.. .....++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876421 01123445555556
Q ss_pred ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec-CceEEEeecC
Q 001310 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 764 (1103)
Q Consensus 709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~vw~~~ 764 (1103)
.+++||....+..... . ....+.+++|+|+|+.+++++. ++.+++|+++
T Consensus 382 ~v~~~d~~~~~~~~~~----~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFW----E---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEE----E---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEEe----c---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 6666655432211110 0 2346788999999999888875 8999999864
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.5e-27 Score=271.01 Aligned_cols=295 Identities=10% Similarity=0.066 Sum_probs=240.9
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..+..+..+. .+.+++|+|+++ ++++++.|+.|++||+.+++.+.... ...+.+|.+.|.+++|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~ 177 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISI 177 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEE
T ss_pred eEEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEE
Confidence 4455555554 677999999665 88999999999999999998765311 1125689999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1103)
+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 9999999999999999999999886554 56688999999999999984 3466778999999999999998888754
Q ss_pred CCceEEEEeeecCCccEEEEEE--------CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310 485 GAPVYSLCPHAKENIHFIFSIS--------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1103)
..+.++++++ ++..+++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++++. .++.
T Consensus 254 -~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~ 326 (433)
T 3bws_A 254 -GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSK 326 (433)
T ss_dssp -SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTE
T ss_pred -CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCE
Confidence 4588888854 667888887 5899999999987665544 33447889999999987766542 2667
Q ss_pred EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeeEEEEcCCCC
Q 001310 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------------DHVIKIWDMNKVQLLTTIDAGGG 621 (1103)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~ 621 (1103)
|++||+.+++.+..+.. . ..+.+++|+|+++++++++. ||.|++||..+++.+..+..+
T Consensus 327 v~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-- 400 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-- 400 (433)
T ss_dssp EEEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--
T ss_pred EEEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--
Confidence 99999999998887763 3 57899999999999988876 579999999999999888764
Q ss_pred CCCCceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001310 622 LPENPRICFNKNGTLLAVIAN-ENRIKILETPE 653 (1103)
Q Consensus 622 ~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~ 653 (1103)
..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 401 -~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 -NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 34789999999999998875 99999999763
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1e-27 Score=275.80 Aligned_cols=256 Identities=16% Similarity=0.251 Sum_probs=214.0
Q ss_pred eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC----------CeeeeeeeeEeeccccccceeeeeccCCC
Q 001310 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----------QKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1103)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1103)
...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+. ..+. .+.+|.
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~ 181 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ 181 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence 34567899999999999985458999999999999999862 2222 266899
Q ss_pred ccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCcc----ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 397 ~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
..|.+++|+|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD 260 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence 9999999999998 9999999999999999884321 223467789999999999995443 899999999999999
Q ss_pred CCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCC-EEEE
Q 001310 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS 546 (1103)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~ 546 (1103)
+.++ +.+..+..|...|.+++|++.. ..++++|+.||.|++||++. ......+..+...|.+++|+|+++ ++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 9987 5778888999999999997642 24799999999999999998 455678888999999999999996 5777
Q ss_pred EecCCCCceeEEEEeCCC--------------CeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001310 547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 610 (1103)
++. ++.|++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 765 56799999987 25556666665 8899999999999 8899999999999998754
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.9e-27 Score=267.52 Aligned_cols=256 Identities=16% Similarity=0.311 Sum_probs=214.6
Q ss_pred eeeeccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCC-------CccccceEeccccccEEEEEEecCCCceEEE
Q 001310 388 KTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1103)
Q Consensus 388 ~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~ 459 (1103)
......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|+
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~ 198 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLL 198 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEE
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEE
Confidence 33346679999999999997 789999999999999999872 112344578899999999999999876 699
Q ss_pred EEcCCCceEEEeCCCCce-------eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC---CeeEEecCCC
Q 001310 460 TCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPG 529 (1103)
Q Consensus 460 s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~ 529 (1103)
+|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..+.
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 999999999999987432 4667789999999999764 4579999999999999999987 4566777888
Q ss_pred ccEEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 001310 530 LGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWD 606 (1103)
Q Consensus 530 ~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 606 (1103)
..|.+++|+|++. .+++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.||.|++||
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred CCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 9999999999998 5667765 66799999998 56778888877 8999999999985 588899999999999
Q ss_pred CCC--------------CeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001310 607 MNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1103)
Q Consensus 607 ~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~ 654 (1103)
+.. .+.+..+..| ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 987 2455555544 45699999999999 9999999999999998754
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.7e-27 Score=270.51 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=219.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEec--------------------------------------
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 438 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-------------------------------------- 438 (1103)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977666 57789999999987211111222
Q ss_pred ----------------cccccEEEEEEecCCCceE-EEEEcCCCceEEEeCC--CCceeEEee--cCCCceEEEEeeecC
Q 001310 439 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE 497 (1103)
Q Consensus 439 ----------------~h~~~v~~~~~s~d~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~ 497 (1103)
+|...|.+++|+|+++ + +++++.|+.|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3444799999999999 5 4899999999999999 888888886 5678999999965
Q ss_pred CccEEEEEECCCeEEEEEcCCCCeeE----EecCCCccEEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310 498 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1103)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1103)
++.+|++++.+|.+++|++.+..... .+..+...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 67899999999999999998776543 56678889999999999 999999986 55699999999988877
Q ss_pred -EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----------------------CCCCCCc
Q 001310 571 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP 626 (1103)
Q Consensus 571 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~ 626 (1103)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+.
T Consensus 236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 44666 899999999 9999999999999999999999988887632 1123578
Q ss_pred eEEEecCCCEEEEEE-CCCeEEEEEc--CCC---CeeEeccccccceeeeEEecC
Q 001310 627 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNPI 675 (1103)
Q Consensus 627 ~v~~s~~g~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~i~~~~~~~~ 675 (1103)
.++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++++|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999999 8999999999 555 556666666 78889999863
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.3e-26 Score=268.38 Aligned_cols=343 Identities=9% Similarity=0.087 Sum_probs=257.4
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeE
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~ 613 (1103)
+++|++..++++.. ++.|.+||..+++.+..+.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888877777654 6679999999999999988544 3889999999999999999999999999 889988
Q ss_pred EEEcCCCCCCCCceEEEec----CCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1103)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 688 (1103)
..+... ..+..++|+| ||+++++++. +++|.+||..+++.+..+..+...+....+.
T Consensus 216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 888743 2368999999 9999999885 8999999999887776554211100000000
Q ss_pred EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEE-eecCceEEEeecCCCc
Q 001310 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRND 767 (1103)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~dg~i~vw~~~~~~ 767 (1103)
....+.++.++|++..+++ ...++.|.+||+....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 1236788999998776554 4557999999875432
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC----
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 841 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~---- 841 (1103)
. +....+ .+...+..++|+|||+++++++ +++|.+||..+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110001 1345577899999999877664 68999999999999888764
Q ss_pred CCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------ceeEEEeccCCCCEEEEEEccCCCEEEEEe-------C
Q 001310 842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 906 (1103)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-------~ 906 (1103)
|.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+|||++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 44433333 5774577788775 689999999998 899999999998899999999999999987 2
Q ss_pred CCeEEEEEcCCCcee-eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE------eCCeEEEEECCCceEEEEee
Q 001310 907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 974 (1103)
Q Consensus 907 dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~------~d~~v~iwd~~~~~~~~~~~ 974 (1103)
+++|.+||+.+++.. ....+....+.......+..+.|+|||+.|.++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 779999999998754 211121100111112368999999999999975 26899999999999998744
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-27 Score=263.12 Aligned_cols=235 Identities=13% Similarity=0.083 Sum_probs=180.7
Q ss_pred EEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec--CCCEEEEEc-CCeE
Q 001310 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVI 825 (1103)
Q Consensus 749 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--d~~~l~~~~-dg~i 825 (1103)
+++++.|+.+++|+... .+.+|+..++..+..... +|...|.+++++| +++++++++ |++|
T Consensus 88 ~~s~s~D~~i~~w~~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 151 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGN-------------QITILDSKTNKVLREIEV---DSANEIIYMYGHNEVNTEYFIWADNRGTI 151 (343)
T ss_dssp EEEECSTTEEEEEETTT-------------EEEEEETTTCCEEEEEEC---CCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred eEEecCCCeEEEEEccC-------------ceEEeecCCcceeEEeec---CCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence 66667777777776543 244566666664444333 3778999999999 999999887 8999
Q ss_pred EEEEcCCceeeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE-EEecc-CCCCEEEEEEccCCCEEE
Q 001310 826 SLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEG-HSKRVTGLVFSDALNILV 902 (1103)
Q Consensus 826 ~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~-h~~~V~~l~~s~dg~~l~ 902 (1103)
++||+.+++....... +...+++++|+| ++.+|++|+.||.|++||+.+++.+ ..+.+ |.+.|.+++|+|+|.+|+
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 9999999998777644 455899999999 8999999999999999999999887 88888 999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCc--eEEEEcCCCCEEEEE-e-CCeEEEEECCCceEEEEeeCCCC
Q 001310 903 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE--THIQFHKDQTRFLLV-H-ETHLAIYEAEELTCLKQWFPISS 978 (1103)
Q Consensus 903 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~fs~dg~~l~~~-~-d~~v~iwd~~~~~~~~~~~~~h~ 978 (1103)
+++ |+.|++||+..++... .+.....+.. .+ .+++|+|+|++|+++ . |+.+++|++.++......
T Consensus 231 s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----- 299 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----- 299 (343)
T ss_dssp EEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----
T ss_pred EEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----
Confidence 999 5599999999865322 1221111111 23 469999999999995 4 899999999766544332
Q ss_pred cCeEEEEEcc---CCCEEEEEecCCcEEEEeCCCce
Q 001310 979 VPISQATFSC---DCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 979 ~~v~~l~fs~---dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
.++..++|++ +++.+++++.||.+.++-.....
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 300 DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 4677888998 89999999999999988655443
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-28 Score=267.31 Aligned_cols=271 Identities=10% Similarity=0.057 Sum_probs=212.6
Q ss_pred EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 419 (1103)
..+.+|+. ++++|+.||+|++||+.+++.+.... ...|.+++|+|+ +++++.|++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT---------------------TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE---------------------EECCCTTCCCCS---EEEECSTTE
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe---------------------cCCceeeeeCCc---eEEecCCCe
Confidence 34556776 79999999999999999998776421 356778889988 999999999
Q ss_pred EEEEEec---------CCCccccceEeccccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCCc
Q 001310 420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 487 (1103)
Q Consensus 420 i~iwd~~---------~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~ 487 (1103)
|++|+.. +++.+.. ...+|...|.+++|+| +++ ++++++.|++|++||+.+++++..... |...
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9999765 3322221 1236778999999999 998 899999999999999999999776644 5568
Q ss_pred eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-EEecC-CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
|.+++|+| ++.+|++|+.||.|++||+++++.. ..+.. |..+|.+++|+|+|.+|++++. + .|++||++++
T Consensus 173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD 245 (343)
T ss_dssp CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence 99999965 7789999999999999999998877 67777 8899999999999999999973 2 6999999998
Q ss_pred eeEEEEecccccCCce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec---CCCEEEE
Q 001310 566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV 639 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~ 639 (1103)
+.+..+..+..+...+ .+++|+|+++++++++. |+.|++|++......... ..+..++|++ +.+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7766555422112333 46999999999999988 999999999765433222 1245677777 8889999
Q ss_pred EECCCeEEEEEcC
Q 001310 640 IANENRIKILETP 652 (1103)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1103)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999887543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=7.7e-26 Score=265.29 Aligned_cols=330 Identities=13% Similarity=0.148 Sum_probs=247.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc--CCCCeeEecccc
Q 001310 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET--PESNSVDAAGVL 663 (1103)
Q Consensus 586 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~ 663 (1103)
++|++..+++++.|++|.+||..+++.+.++..... +..++|+|||++|++++.|+.|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence 788888888899999999999999999999874322 678999999999999999999999999 5554333221
Q ss_pred ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe
Q 001310 664 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 743 (1103)
Q Consensus 664 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 743 (1103)
+...+..++|+
T Consensus 220 ---------------------------------------------------------------------~g~~p~~va~s 230 (543)
T 1nir_A 220 ---------------------------------------------------------------------IGIEARSVESS 230 (543)
T ss_dssp ---------------------------------------------------------------------CCSEEEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCcceEEeC
Confidence 12346788999
Q ss_pred c----CCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC-------CCCCCCeeEEEEe
Q 001310 744 N----GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD-------SNSQEAVPCFALS 811 (1103)
Q Consensus 744 ~----~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s 811 (1103)
| ||+++++++. ++.+.+||....+. +....... ......+.+++++
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~----------------------~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGETLEP----------------------KQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCE----------------------EEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCcCCCCCEEEEEEccCCeEEEEecccccc----------------------ceeecccCcccCccccccCCceEEEEEC
Confidence 9 9999988875 78999988654321 11111100 0023478899999
Q ss_pred cCCCEEEEEc--CCeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeEEEecc--
Q 001310 812 KNDAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEG-- 884 (1103)
Q Consensus 812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~-- 884 (1103)
|++..+++.. +++|.+||+.+.+.+. .+. +...+..++|+| +++++++ +..+++|.+||+.+++++..+..
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 9887666554 6899999998866544 443 556788999999 7886655 45688999999999999888874
Q ss_pred --CCCCEEEEEEccC-CCEEEEEe-CCCeEEEEEcCCCce--eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe---
Q 001310 885 --HSKRVTGLVFSDA-LNILVSSG-GDAQIFVWDVDGWGI--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--- 955 (1103)
Q Consensus 885 --h~~~V~~l~~s~d-g~~l~s~s-~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--- 955 (1103)
|.+....+ ++|+ |..++++. .|++|.+||+++..- ...++++...++.. .+..++|+|||++|.++.
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~---~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG---GSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCCEEEECCTTC
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---CceEEEcCCCCCcEEEecCCC
Confidence 65544443 4677 66777775 689999999988210 00123344443332 577899999999999964
Q ss_pred -----CCeEEEEECCCceEEEEee--------CCCCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCceeEEeec
Q 001310 956 -----ETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 956 -----d~~v~iwd~~~~~~~~~~~--------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+++|.+||+.+++.....+ ..+...+..+.|++||+.|+++. .|++|.|||..|++++.++.
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999998773322 35678999999999999988763 47999999999999998887
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.5e-27 Score=270.39 Aligned_cols=276 Identities=7% Similarity=-0.022 Sum_probs=180.2
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp- 406 (1103)
.....|...+....+++++. ++|+|+.|++|+|||+.+++...... ...+.||.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence 44456666677777777876 79999999999999999887654311 123789999999999998
Q ss_pred -------CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999998876444 56689999999999998864 79999999999999999998876
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEc-cCCCEEEEEecCCCCceeEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~ 558 (1103)
....+.......++..... ..........+...+.++.|+ +|++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 6654433322222211111 011111223456677888886 79999999875 66799
Q ss_pred EEeCCCCeeEEEEecccccCCceEEE------------------EEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
+||+.++.....+..+. ..+..+ .++| ++.++++|+.||+|++||..+++....+..
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99999887766655443 222222 2333 233556688999999999999988877765
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 619 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
+. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 53 4699999999999999999876 666654
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=5.1e-27 Score=265.99 Aligned_cols=322 Identities=13% Similarity=0.073 Sum_probs=201.7
Q ss_pred cCCCceEEEEEcCCCcEEEEECCCCCee-----eeeeeeEeeccccc-----cceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 343 HPVQHTLLLVGTNVGDTGLWDVNSGQKL-----FIRNFKVWDIGACS-----MLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 343 spdg~~llasgs~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
+|++..+++.| .|+.|.+|+....... .......|+..... ..........|...+....+++++.+||
T Consensus 27 ~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 27 SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 56665566666 4678999986432111 11111222211100 0011112334555666667777889999
Q ss_pred EEeCCCeEEEEEecCCCccc--cceEeccccccEEEEEEec--------CCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310 413 VAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~--------d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1103)
+++.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|++++.|++|+|||+.++.++..+.
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeeec
Confidence 99999999999999886432 2224679999999999998 777 89999999999999999999998888
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
+|..+|.+++|+|. +..+|++++.||+|++||+.+++.......+.......+++++ .
T Consensus 184 ~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~---------------------~ 241 (393)
T 4gq1_A 184 PLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN---------------------T 241 (393)
T ss_dssp ECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE---------------------S
T ss_pred CCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc---------------------c
Confidence 99999999999764 3358999999999999999887665443322211111111110 0
Q ss_pred CCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC----------------CCCC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----------------LPEN 625 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v 625 (1103)
..........+|. ..+.++.|+ ++++.+++++.|+++++||+..++....+..+.. ....
T Consensus 242 ~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 242 LPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp GGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred ccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 0000111223344 678888886 8999999999999999999988766555433211 0112
Q ss_pred ceEEEec--CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310 626 PRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1103)
Q Consensus 626 ~~v~~s~--~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1103)
....|+| ++.++++|+.||.|++||..+++.......+...|.+++|+ |||++|++
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs----------------------pdG~~LA~ 376 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH----------------------QDGSHLAI 376 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC----------------------TTSSEEEE
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc----------------------CCCCEEEE
Confidence 2334444 44466778889999999999998888888899999999997 78888888
Q ss_pred eccccccccccc
Q 001310 704 VEAENKSEVEKP 715 (1103)
Q Consensus 704 ~~~d~~i~~w~~ 715 (1103)
++.+| +.+|.+
T Consensus 377 as~~G-v~lvrL 387 (393)
T 4gq1_A 377 ATEGS-VLLTRL 387 (393)
T ss_dssp EESSE-EEEEEE
T ss_pred EeCCC-eEEEEE
Confidence 87765 444443
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.7e-25 Score=252.02 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=240.9
Q ss_pred CCcCceEEEecCCCceEEEEEc----CCC----cEEEEEC--CCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs----~d~----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
+...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 123 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYA 123 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHH
Confidence 3458889999999987888886 467 8999999 9998764322 44677777777
Q ss_pred EECC--------------CCCEEEEEeCC------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc
Q 001310 403 VWSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1103)
Q Consensus 403 ~~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1103)
++++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++
T Consensus 124 ~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s 197 (415)
T 2hqs_A 124 GHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVT 197 (415)
T ss_dssp HHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEE
Confidence 7664 26677777654 799999998543 33 5778999999999999999 788888
Q ss_pred CCC---ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEE-EEECCCe--EEEEEcCCCCeeEEecCCCccEEEEE
Q 001310 463 DDK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMA 536 (1103)
Q Consensus 463 ~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1103)
.|+ .|++||+.+++.. .+..|...+.+++|+| +|..|+ +++.++. |++||+.+++. ..+..+...+.+++
T Consensus 198 ~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT 273 (415)
T ss_dssp CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence 775 9999999999875 5667888999999965 677777 6666655 99999988665 45666777899999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeE
Q 001310 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLL 613 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 613 (1103)
|+|||++|++++.. ++...|++||+.+++.. .+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 274 ~spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 99999999988742 23457999999888743 333333 678899999999999987754 58999999988774
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCC---eEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310 614 TTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1103)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 676 (1103)
.+..+ ..+.+++|+|+|++|++++.++ .|++|++. +.....+..+...+.+++|+|..
T Consensus 349 -~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 -VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred -EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 34333 2588999999999999988877 79999987 45677788899999999999754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.8e-23 Score=259.51 Aligned_cols=303 Identities=13% Similarity=0.079 Sum_probs=213.3
Q ss_pred CcCceEEEecCCCceEEEEEcC-CC-----cEEEEECCCCCeeeeeeeeEee-----ccccccceeeeeccCCCccEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLFKTALVRDPGVSVNRV 402 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~-d~-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~~ 402 (1103)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... ++......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999994 677666 87 8999999998865432110000 00000000000000001348899
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCC--ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 222 3567888899999999999 677776 56899999999887665
Q ss_pred eecCCCc----------------eEEEEeeecCCccEEEEEECCC---------------------------------eE
Q 001310 481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 511 (1103)
Q Consensus 481 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 511 (1103)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5444432 356677 55788898887765 78
Q ss_pred EEEEcCC-CCeeEEec--CCCccEEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeeEEEEecccccCC---ceEEE
Q 001310 512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 584 (1103)
Q Consensus 512 ~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 584 (1103)
.+||+.+ ++...... .+...+..++| |||++|+++.. ....+..|++||+.+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8899887 76554433 35568899999 99999997764 23346789999999998877776554 12 34678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEEcCCCCCCCCceE-EEecCCCEEEEEEC-CC--eEEEEEcC
Q 001310 585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 652 (1103)
Q Consensus 585 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~g~~l~~~~~-dg--~i~iw~~~ 652 (1103)
+|+|||+.+++++.+|.+++|.+. ++. ...+..+ ...+..+ .|+|+|+.++..+. ++ .+++|++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988888999988888765 344 5555443 2346666 59999998765544 44 78888875
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.2e-23 Score=239.61 Aligned_cols=305 Identities=13% Similarity=0.111 Sum_probs=226.0
Q ss_pred cccEEEEEEecCCCceEEEEEc----CCC----ceEEEeC--CCCcee--EEeecCCCceEEEEeeec------------
Q 001310 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1103)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------ 496 (1103)
...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356778889999886 666775 567 8999999 999988 458889888887776532
Q ss_pred CCccEEEEEECC------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1103)
Q Consensus 497 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1103)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 013466666654 7999999985 44556666778999999999999999988643 2468999999998875 4
Q ss_pred EecccccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CC--
Q 001310 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1103)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-dg-- 644 (1103)
+..+. ..+.+++|+|+|+.|+ +++.++. |++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 99999998876 344433 345789999999999988876 34
Q ss_pred eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccce
Q 001310 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1103)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 724 (1103)
.|.+|++.+++... +.
T Consensus 292 ~i~~~d~~~~~~~~-l~--------------------------------------------------------------- 307 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-IT--------------------------------------------------------------- 307 (415)
T ss_dssp EEEEEETTSSCCEE-CC---------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-Ee---------------------------------------------------------------
Confidence 45555655432100 00
Q ss_pred eeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCC
Q 001310 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1103)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1103)
.+...
T Consensus 308 ---------------------------------------------------------------------------~~~~~ 312 (415)
T 2hqs_A 308 ---------------------------------------------------------------------------WEGSQ 312 (415)
T ss_dssp ---------------------------------------------------------------------------CSSSE
T ss_pred ---------------------------------------------------------------------------cCCCc
Confidence 02234
Q ss_pred eeEEEEecCCCEEEEEc-C---CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC---eEEEEEcCCce
Q 001310 805 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 877 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~ 877 (1103)
+.+++|+|||++|++++ + ..|.+||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. +.
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 45566677777666654 2 4688999988776 3455454 899999999 899998888777 89999987 56
Q ss_pred eEEEeccCCCCEEEEEEccCC
Q 001310 878 VISKLEGHSKRVTGLVFSDAL 898 (1103)
Q Consensus 878 ~~~~l~~h~~~V~~l~~s~dg 898 (1103)
....+.+|.+.|.+++|+|.-
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCC
T ss_pred cEEEeeCCCCCCcCCcccccc
Confidence 678889999999999999964
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.4e-22 Score=251.46 Aligned_cols=331 Identities=11% Similarity=0.014 Sum_probs=235.5
Q ss_pred cccEEEEEEecCCCceEEEEEcC-CC-----ceEEEeCCCCceeEEeecCCC------------------------ceEE
Q 001310 441 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGA------------------------PVYS 490 (1103)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~ 490 (1103)
...+.+++|||||+ .|++++. |+ .|++||+.+++....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 899999999988777765433 2677
Q ss_pred EEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
++| ++||++|++++. +.|.+||+.++. ....+..+...+..++|||||++|++++. +.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence 777 457889998886 999999998873 34445566678999999999999998863 36999999998876
Q ss_pred EEEeccccc-------------CCceEEEEEcCCCCEEEEEeCCC---------------------------------cE
Q 001310 569 RTYQGLQLQ-------------HNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 602 (1103)
Q Consensus 569 ~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~dg---------------------------------~i 602 (1103)
+....+... ...+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 554433200 01147799999999999987665 78
Q ss_pred EEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-----CCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310 603 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1103)
Q Consensus 603 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 676 (1103)
++||+.+ ++.........+...+..++| |||++|++++. +..|.+||..+++....+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET------------- 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence 9999988 876554432123345788999 99999987764 455777776655322111100
Q ss_pred ceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCc
Q 001310 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1103)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 756 (1103)
.+
T Consensus 332 -----------------------------------------------------------------------------~~- 333 (741)
T 2ecf_A 332 -----------------------------------------------------------------------------SP- 333 (741)
T ss_dssp -----------------------------------------------------------------------------CS-
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred eEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcC-Cce
Q 001310 757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 834 (1103)
Q Consensus 757 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~-~~~ 834 (1103)
.....+..++|+|||+++++++ ++.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0001233456777777666665 4666666654 344
Q ss_pred eeEEecCCCCCeeEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-ceeEEEeccCCCCEEEEEEccCCCEEEEEeCC--
Q 001310 835 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 907 (1103)
Q Consensus 835 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-- 907 (1103)
...+..+...+..+ +|+| +++.|+ +++.++ .++||++.. +.....+.. ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 67777777788887 5999 776654 555555 899999874 555667765 6678999999999998876543
Q ss_pred --CeEEEEEcCCCc
Q 001310 908 --AQIFVWDVDGWG 919 (1103)
Q Consensus 908 --g~I~iwd~~~~~ 919 (1103)
..+.+|+...+.
T Consensus 448 ~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 448 TPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEEETTSCE
T ss_pred CCCeEEEEEcCCCe
Confidence 468999987643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.6e-23 Score=257.35 Aligned_cols=312 Identities=9% Similarity=0.084 Sum_probs=223.7
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc---cEEEEEECCCCCEEE
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~la 412 (1103)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999999 5666 6889999999999986543 444554 499999999999999
Q ss_pred EEeCC---------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1103)
Q Consensus 413 s~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1103)
+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999874 22222335555689999999999 5777664 7999999999988776655
Q ss_pred CCCce------------------EEEEeeecCCccEEEEEECCC----------------------------------eE
Q 001310 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1103)
Q Consensus 484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1103)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 66777 55788898887553 79
Q ss_pred EEEEcCCCCeeEEecCC------CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce----
Q 001310 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1103)
Q Consensus 512 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1103)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999888765555543 55789999999999987776554456789999999998877665432 1233
Q ss_pred EEEEEcCCCCEEEEE--eCCC------cEEEEE-CCCCee--EEEEcCCCCCCCCce-EEEecCCCEEEEEECC---CeE
Q 001310 582 SVVHFDTAKDQILAA--GDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1103)
Q Consensus 582 ~~~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~g~~l~~~~~d---g~i 646 (1103)
..++|+|||+.|+.. ..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 378999999987764 4566 577778 344441 3333321 1 22333 6899999999877665 789
Q ss_pred EEEEcCCCC--eeEeccc---cccceeeeEEecCCce
Q 001310 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPISTV 678 (1103)
Q Consensus 647 ~iw~~~~~~--~~~~~~~---~~~~i~~~~~~~~~~~ 678 (1103)
++|++.... ....+.. +...+..++++|++..
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence 999986432 2333332 3455666777754443
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.5e-23 Score=253.74 Aligned_cols=386 Identities=11% Similarity=0.077 Sum_probs=254.2
Q ss_pred cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---------Cc
Q 001310 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~ 601 (1103)
...+++|+|||+++++ +. ++.|++||..+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997754 32 5579999999999888777665211248999999999999998764 78
Q ss_pred EEEEECCCCeeEEEEcC-CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceee
Q 001310 602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1103)
Q Consensus 602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 680 (1103)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999876 33332 222334788999999999999987 789999998876544332211110
Q ss_pred eeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEE
Q 001310 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 759 (1103)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~ 759 (1103)
+..+.. -|-.. ..-...+.+++|||||+.|++++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999988765 4566
Q ss_pred EeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEe
Q 001310 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839 (1103)
Q Consensus 760 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~ 839 (1103)
+|++.... + .+...+..+.|+++|.. ..+..|++||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 66543211 0 12234678888888763 12357999999998876666
Q ss_pred cCC------CCCeeEEEEcCCCCCEEEEEeC----CCeEEEEEcCCceeEEEecc-CCCCEE----EEEEccCCCEEEE-
Q 001310 840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS- 903 (1103)
Q Consensus 840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~V~----~l~~s~dg~~l~s- 903 (1103)
..+ ...+..++||| |+++|++... +..|++||+.+++....+.. |.+.+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 36899999999987766654 344443 7899999997775
Q ss_pred -EeCCC------eEEEEE-cCCCceeeeeeeecCCCcccCCCCceE-EEEcCCCCEEEE-EeC---CeEEEEECCCce--
Q 001310 904 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 968 (1103)
Q Consensus 904 -~s~dg------~I~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~fs~dg~~l~~-~~d---~~v~iwd~~~~~-- 968 (1103)
+..++ .|.+|| ..+++... ......++. .+.. ++|||||+.|+. +.+ +.+.+|++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45677 566677 34433000 011111222 2444 699999999986 443 678999986432
Q ss_pred EEEEeeCC--CCcCeEEEEEccCCCEEEEEecC-C--cEEEEeCCCceeEEee
Q 001310 969 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1103)
Q Consensus 969 ~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~d-g--~v~vWd~~~~~~~~~~ 1016 (1103)
....+... |...+..++|||||++|+..... + .+.+++..++..+..+
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322221 56778999999999988865432 2 3455676666544433
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.8e-21 Score=214.00 Aligned_cols=281 Identities=10% Similarity=0.069 Sum_probs=205.8
Q ss_pred EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC-CC
Q 001310 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d~ 418 (1103)
..|++++++++++++.++.|.+||..+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999987754 22345566 9999999997777665 88
Q ss_pred eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-C--ceEEEeCCCCceeEEeecCCCceEEEEeee
Q 001310 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1103)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1103)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+|
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC
Confidence 9999999998751 224555655655599999999 56655544 3 8999999999998887654 4457888865
Q ss_pred cCCcc-EEEEEECCCe-EEEEEcCCCCeeE----EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--
Q 001310 496 KENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-- 567 (1103)
Q Consensus 496 ~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-- 567 (1103)
+++ ++++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 555 4455566688 9999998654432 22233456789999999998777653 256799999999987
Q ss_pred -EEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee--EEEEcCC----CC-CCCCceEEEecCCCEEE
Q 001310 568 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA 638 (1103)
Q Consensus 568 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~g~~l~ 638 (1103)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .. ......++|+|||++|+
T Consensus 213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 6666643 4677899999999877655 578899999999887 4444322 11 11124589999999887
Q ss_pred EEEC-CCeEEEEEcCCC
Q 001310 639 VIAN-ENRIKILETPES 654 (1103)
Q Consensus 639 ~~~~-dg~i~iw~~~~~ 654 (1103)
+++. ++.|.+|++...
T Consensus 289 v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 289 ISANISRELKVFTISGK 305 (331)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EecCCCCcEEEEEecCC
Confidence 6665 569999999865
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2e-21 Score=239.38 Aligned_cols=242 Identities=10% Similarity=0.070 Sum_probs=168.0
Q ss_pred CeeEEEEecCCCEEEEEcCCeEEEEEcCC-----ceeeEEecCCCCC--------------eeEEEEcCCCCCEEEEEe-
Q 001310 804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM- 863 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~- 863 (1103)
.+.+++|||||++|+++.++.|++||+.+ ++..+....+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34556777777777777677788888776 6555443333332 58999999 899999987
Q ss_pred --------------------------------CCCeEEEEEcCCceeEEEec--cCCCCEEEEEEccCCCEEEEEeCCC-
Q 001310 864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA- 908 (1103)
Q Consensus 864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg- 908 (1103)
.+..|++||+.+++...... .|...+.+++|||||++|++++.++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999988654442 4777899999999999999988775
Q ss_pred ----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC--CCCEEEEE-eCCeEEEEECC-CceEEEEeeCCCCcC
Q 001310 909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP 980 (1103)
Q Consensus 909 ----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~~-~d~~v~iwd~~-~~~~~~~~~~~h~~~ 980 (1103)
.|++||+.+++.............. ..+.+++||| ||++++++ .++.+.+|+++ ++..+.. +..|...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence 8999999998322211111111111 1346789999 99988886 66778888775 5666655 4556777
Q ss_pred eEE-EEEccCCCEEEEEecC-C----cEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCC
Q 001310 981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKP 1054 (1103)
Q Consensus 981 v~~-l~fs~dg~~l~t~~~d-g----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1054 (1103)
+.. ++|+|||+.|+.++.+ + .|..||+.+++.. .+. +...+. .++|+|+ +
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--------------------~~~~~~--~~~~spd-g 412 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT--------------------PESGMH--RTQLSPD-G 412 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC--------------------CSSSEE--EEEECTT-S
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc--------------------CCCceE--EEEECCC-C
Confidence 876 7999999988766544 3 6777777776532 222 122243 5789998 7
Q ss_pred cEEEEEecC----CcEEEEccCCC
Q 001310 1055 TQFAVGLTN----GEVYVIEPNEP 1074 (1103)
Q Consensus 1055 ~~l~~~~~d----g~v~vw~~~~~ 1074 (1103)
..++.+..+ +.|.+|++...
T Consensus 413 ~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 413 SAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp SEEEEEEECSSCSCEEEEEESSSC
T ss_pred CEEEEEecCCCCCcEEEEEECCCC
Confidence 777766544 46999998443
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=7.5e-21 Score=212.70 Aligned_cols=275 Identities=11% Similarity=0.085 Sum_probs=213.6
Q ss_pred CcCceEEEecCCCceEEEEEcC------CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
...+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~d 99 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNT 99 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCC
Confidence 3478899999999865555433 6789999999998776422 2234678999999
Q ss_pred CCEEEEE-eCCCeEEEEEecCCCccccceEeccccc---------cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310 408 GSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 408 g~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
|++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+||+.+++.
T Consensus 100 g~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 100 TQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred CCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence 9966655 557899999999987554 3333321 27889999999953222224688999999999999
Q ss_pred eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC----CCccEEEEEEccCCCEEEEEecCCCC
Q 001310 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
+..+..+...+..++++ +++.++++++.++.|.+||..+++....+.. +...+..++|+|+|++++++.. .
T Consensus 177 ~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~ 251 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---K 251 (353)
T ss_dssp EEEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---S
T ss_pred EEEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---C
Confidence 98887666667888885 4778899999999999999998887766554 3446788999999998887763 2
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~ 323 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSA 323 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECT
T ss_pred CCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcC
Confidence 5679999999999888877543 25689999999776655 68999999999999988887653 368999999
Q ss_pred CCCEEEEEECCC
Q 001310 633 NGTLLAVIANEN 644 (1103)
Q Consensus 633 ~g~~l~~~~~dg 644 (1103)
+|++++++..++
T Consensus 324 dg~~l~v~~~~~ 335 (353)
T 3vgz_A 324 DGKTLYVSVKQK 335 (353)
T ss_dssp TSCEEEEEEECC
T ss_pred CCCEEEEEEccc
Confidence 999887776654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=6e-21 Score=235.16 Aligned_cols=238 Identities=9% Similarity=-0.005 Sum_probs=166.4
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc-ccceEecccc-----------------ccEEEEEEecCCCceEEEE
Q 001310 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1103)
Q Consensus 399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~~~~s~d~~~~~l~s 460 (1103)
+..+.|+ |..+++++.++ | +||+.+++.+ . .+..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999998752 3 233333 46999999999 5 3433
Q ss_pred EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-----CCeeEEecCCCcc----
Q 001310 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1103)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 531 (1103)
+ .++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++|++.+ ++...........
T Consensus 98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-ECCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 3 35999999999887654 44566778888885 477888884 789999999988 6554433333222
Q ss_pred ----------EEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeeEEEEe
Q 001310 532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 572 (1103)
Q Consensus 532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 572 (1103)
+.+++|||||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988732 1245789999999988655443
Q ss_pred cccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEc-CCC--CCCCCceEEEec--CCCEEEEEEC
Q 001310 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN 642 (1103)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~g~~l~~~~~ 642 (1103)
.. .+...+..++|+|||++|++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987765 89999999984333332 111 111246789999 9998888888
Q ss_pred CCeEEEEEcC
Q 001310 643 ENRIKILETP 652 (1103)
Q Consensus 643 dg~i~iw~~~ 652 (1103)
++.+++|...
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8888888654
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.2e-20 Score=207.89 Aligned_cols=277 Identities=14% Similarity=0.157 Sum_probs=193.7
Q ss_pred CceEEEEEcCCCcEEEEECC-CCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC-CeEEEE
Q 001310 346 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1103)
Q Consensus 346 g~~llasgs~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d-~~i~iw 423 (1103)
+++++++++.|+.|.+||+. +++..... ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 34466676889999999995 34322111 12367789999999999999998876 899999
Q ss_pred Eec--CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---CCceeEEeecCCCceEEEEeeecCC
Q 001310 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN 498 (1103)
Q Consensus 424 d~~--~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~ 498 (1103)
++. +++. .....+..+. .+.+++|+|+|+. +++++..++.|.+||+. +++.+..+..+ ..+.+++|+ ++
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~d 139 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--PD 139 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--TT
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--CC
Confidence 998 5442 2222343333 7899999999994 33444558899999994 44455555543 457778885 46
Q ss_pred ccEEEEEE-CCCeEEEEEcCC-CCeeE----Eec-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Cee--
Q 001310 499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI-- 567 (1103)
Q Consensus 499 ~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~-- 567 (1103)
+.++++++ .++.|.+||+.+ ++... ... .....+..++|+|+|+++++++. .++.|.+|++.. ++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777777 899999999987 44322 222 23457888999999998877653 256799999953 433
Q ss_pred EEEEeccc---ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--C--CeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310 568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1103)
Q Consensus 568 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 639 (1103)
...+.... .....+..++|+|++++++++ ..++.|++||+. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22232111 112357789999999988754 478999999998 3 34445554432 2789999999999888
Q ss_pred EE-CCCeEEEEEcC
Q 001310 640 IA-NENRIKILETP 652 (1103)
Q Consensus 640 ~~-~dg~i~iw~~~ 652 (1103)
++ .++.+.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999554
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2.2e-20 Score=207.37 Aligned_cols=292 Identities=12% Similarity=0.103 Sum_probs=203.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE-EECCCeEEEEEcCCCCeeEeccccccceee
Q 001310 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK 669 (1103)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~ 669 (1103)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.+++ ...++.|.+||..+++.+..+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 4688899999999999999999888875431113688999999987655 455789999998877544322100000
Q ss_pred eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1103)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1103)
.+...+..++|+|+|+.+
T Consensus 79 --------------------------------------------------------------~~~~~~~~~~~s~dg~~l 96 (337)
T 1pby_B 79 --------------------------------------------------------------ERVKSLFGAALSPDGKTL 96 (337)
T ss_dssp --------------------------------------------------------------EEEECTTCEEECTTSSEE
T ss_pred --------------------------------------------------------------cccccccceEECCCCCEE
Confidence 000111223444444433
Q ss_pred EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEE
Q 001310 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI 829 (1103)
Q Consensus 750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd 829 (1103)
+++...... .++. + -..++.|.+||
T Consensus 97 ~~~~~~~~~----------------------------------------------------~~~~-~--~~~~~~i~v~d 121 (337)
T 1pby_B 97 AIYESPVRL----------------------------------------------------ELTH-F--EVQPTRVALYD 121 (337)
T ss_dssp EEEEEEEEE----------------------------------------------------CSSC-E--EECCCEEEEEE
T ss_pred EEEeccccc----------------------------------------------------cccc-c--cccCceEEEEE
Confidence 333211000 0000 0 00358899999
Q ss_pred cCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC-C
Q 001310 830 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A 908 (1103)
Q Consensus 830 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g 908 (1103)
+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..++|+|||+.++..+.+ +
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 122 AETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSG 196 (337)
T ss_dssp TTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTT
T ss_pred CCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCC
Confidence 999988877764 45678899999 88878777 689999999999988777654311 123789999877654433 2
Q ss_pred -----------------------eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001310 909 -----------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1103)
Q Consensus 909 -----------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~ 965 (1103)
.|.+||+.+++... ..+.... ..+.+++|+|||++++++ ++.|.+||+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~------~~~~~~~~s~dg~~l~~~-~~~v~~~d~~ 268 (337)
T 1pby_B 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRIMD------VFYFSTAVNPAKTRAFGA-YNVLESFDLE 268 (337)
T ss_dssp EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEECS------SCEEEEEECTTSSEEEEE-ESEEEEEETT
T ss_pred ceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCCCC------CceeeEEECCCCCEEEEe-CCeEEEEECC
Confidence 46899999987542 1221111 257789999999999988 7999999999
Q ss_pred CceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 269 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 269 KNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9988876543 3467899999999999999999999999999999888776
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3e-20 Score=206.83 Aligned_cols=282 Identities=9% Similarity=0.128 Sum_probs=193.8
Q ss_pred cceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEEEeecCCCcccccccccccc
Q 001310 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKV 778 (1103)
Q Consensus 700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 778 (1103)
.+++++.++.|++|++..... ...+.. ..+...+..++|+|+|+.+++++.+ +.+.+|++...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA--LTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC--EEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEEeCCCCCeEEEEEECCCCc--EEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 344557899999999863111 111111 1255678889999999999888886 99999997621
Q ss_pred CCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEc---CCceeeEEecCCCCCeeEEEEcC
Q 001310 779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNP 853 (1103)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~ 853 (1103)
++.......+. ....+..++|+|+|+++++++ ++.|.+||+ .+.+....+.. ...+.+++|+|
T Consensus 71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~ 138 (343)
T 1ri6_A 71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP 138 (343)
T ss_dssp --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT
T ss_pred --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC
Confidence 11101111111 123778999999999887765 688999999 44555555553 34688999999
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCC-ceeEE----Eecc-CCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCC--Cceeee
Q 001310 854 HDNNVIAIGM-DDSTILIYNARS-SEVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTC 923 (1103)
Q Consensus 854 ~d~~~lasg~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~--~~~~~~ 923 (1103)
++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|++|++++ .++.|.+|++.. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 888777777 899999999987 65432 2332 344788999999999776554 789999999954 444333
Q ss_pred eeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECC--C--ceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--E--LTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~--~--~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
..+............+..++|+|||++|+++ .++.|.+||+. + .+.+..+ ..+. .+..++|+|||++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTET-QPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSS-SCCCEEECTTSSEEEEEC
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCCC-ccceEEECCCCCEEEEec
Confidence 3333222211112256789999999988864 57899999998 3 3344432 2233 388999999999988887
Q ss_pred -cCCcEEEEeC--CCcee
Q 001310 998 -VDGTLSIHEA--SNLEV 1012 (1103)
Q Consensus 998 -~dg~v~vWd~--~~~~~ 1012 (1103)
.++.|.+|++ .++++
T Consensus 296 ~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 296 QKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTCEEEEEEEETTTTEE
T ss_pred CCCCeEEEEEEcCCCcee
Confidence 6899999954 46654
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.2e-19 Score=200.87 Aligned_cols=290 Identities=8% Similarity=0.070 Sum_probs=190.4
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCee-
Q 001310 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQL- 612 (1103)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~- 612 (1103)
..|.++++++++... .++.|.+||..+++.+..+..+. ..+ .++|+|+++++++++. ++.|++||..+++.
T Consensus 3 ~~~~~~~~~~~v~~~---~~~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQ---HLRRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ----CCCCEEEEEEG---GGTEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eeEcCCCCEEEEEec---CCCeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 356677777665543 25679999999999988877544 556 9999999998777665 89999999999887
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCC---eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceE
Q 001310 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1103)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 689 (1103)
...+..+. ....+++|+|+|++++++..++ .|.+||..+++.+..+.
T Consensus 76 ~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------------- 125 (331)
T 3u4y_A 76 VVAIQEGQ--SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP---------------------------- 125 (331)
T ss_dssp EEEEEECS--SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------------------------
T ss_pred EEecccCC--CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------------------------
Confidence 66665443 2334499999999999555553 89999988764433211
Q ss_pred ecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec-Cce-EEEeecCCCc
Q 001310 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGV-HLMWRWPRND 767 (1103)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~-i~vw~~~~~~ 767 (1103)
.......++|+|+|+++++++. ++. +.+|++..
T Consensus 126 -------------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~-- 160 (331)
T 3u4y_A 126 -------------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA-- 160 (331)
T ss_dssp -------------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT--
T ss_pred -------------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECC--
Confidence 0112345666666664444433 244 55555321
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCee
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTAT 847 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 847 (1103)
++.. .+.. ...+ .......
T Consensus 161 ---------------------------------------------~g~~-----------~~~~----~~~~-~~~~~~~ 179 (331)
T 3u4y_A 161 ---------------------------------------------DGVL-----------FDTG----QEFI-SGGTRPF 179 (331)
T ss_dssp ---------------------------------------------TCCE-----------EEEE----EEEE-CSSSSEE
T ss_pred ---------------------------------------------CCcE-----------eecC----Cccc-cCCCCcc
Confidence 0000 0000 1111 2345578
Q ss_pred EEEEcCCCCCEE-EEEeCCCeEEEEEcCCcee---EEEeccCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCceee
Q 001310 848 SLAFNPHDNNVI-AIGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQT 922 (1103)
Q Consensus 848 ~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~~~~~~ 922 (1103)
.++|+| +++++ +++..++.|.+||+.+++. +..+..+ ..+..++|+|||++|+.++ .++.|.+||+.+++...
T Consensus 180 ~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 180 NITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF 257 (331)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred ceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence 999999 78755 5555689999999999887 7777744 5678999999999776554 57889999999987633
Q ss_pred eeeeecC-CCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceE
Q 001310 923 CRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC 969 (1103)
Q Consensus 923 ~~~~~~~-~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~ 969 (1103)
...+... ............++|+|||++|+++ .++.|.+||+.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 2222211 0000100123568999999998774 456999999986654
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.9e-19 Score=201.24 Aligned_cols=277 Identities=10% Similarity=0.115 Sum_probs=211.6
Q ss_pred CceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEE
Q 001310 579 NSVSVVHFDTAKDQILAAGD-------DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILE 650 (1103)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~ 650 (1103)
..+..++|+|+++++++++. ++.|.+||..+++.+..+.... .+..++|+|+|++++++. .++.|.+||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 46788999999999988774 5689999999999888887542 367899999999666554 478999999
Q ss_pred cCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccC
Q 001310 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1103)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 730 (1103)
..+++.+..+..+..
T Consensus 118 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 132 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDR----------------------------------------------------------------- 132 (353)
T ss_dssp TTTCCEEEEEESCCC-----------------------------------------------------------------
T ss_pred CCCCeeEEEEecCCC-----------------------------------------------------------------
Confidence 887654432211000
Q ss_pred ccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1103)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 810 (1103)
. ++. ......+.++++
T Consensus 133 ----------------~------------------------------------~~~------------~~~~~~~~~~~~ 148 (353)
T 3vgz_A 133 ----------------K------------------------------------RTE------------EVRPLQPRELVA 148 (353)
T ss_dssp ----------------C------------------------------------CCS------------SCCCCEEEEEEE
T ss_pred ----------------c------------------------------------ccc------------ccCCCCCceEEE
Confidence 0 000 001223567788
Q ss_pred ecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc---
Q 001310 811 SKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--- 884 (1103)
Q Consensus 811 s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~--- 884 (1103)
+|+|++++++. ++.|.+||..+++.+..+..+...+.+++|+| ++++|++++.++.|.+||+.+++.+..+..
T Consensus 149 s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 227 (353)
T 3vgz_A 149 DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDD 227 (353)
T ss_dssp ETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCS
T ss_pred CCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC
Confidence 88888776664 57899999999999988876666788999999 889999999999999999999998877764
Q ss_pred -CCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEE
Q 001310 885 -HSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLA 960 (1103)
Q Consensus 885 -h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~ 960 (1103)
+...+.+++|+|||+++++++. ++.|.+||+.+++.... +... ....++|+|||++++++ .++.|.
T Consensus 228 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~--------~~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 228 GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK--VAAP--------ESLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE--EECS--------SCCCEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--EEcC--------CCceEEECCCCCEEEEEECCCCeEE
Confidence 5567889999999997776665 59999999998875442 2221 12469999999977764 578999
Q ss_pred EEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus 961 iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
+||..+++.+..+.. ...+.+++|+|||++|+++..++
T Consensus 298 ~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 298 VIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence 999999998877543 34789999999999888777664
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.7e-20 Score=205.52 Aligned_cols=280 Identities=10% Similarity=0.050 Sum_probs=207.6
Q ss_pred EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc-cEEEEEECCCCCEEEE-EeCCCeEEEEEec
Q 001310 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 426 (1103)
Q Consensus 349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~spdg~~las-~~~d~~i~iwd~~ 426 (1103)
++++++.++.|.+||+.+++.+.... .++.. .+..++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 68889999999999999988765421 12222 4788999999987654 4567899999999
Q ss_pred CCCccccceEecc---ccccEEEEEEecCCCceEEEEEc------------CCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 427 ~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1103)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88755422 1111 233677899999999 566554 579999999999998887764 4456777
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC------------------
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------ 553 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------------------ 553 (1103)
+|+ +++.+++++ ++.|.+||+.+++....+...... ..+.|+|+|+.++..+.....
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 775 466777777 689999999988776665544311 123789999877655421110
Q ss_pred --ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 554 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 554 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
...|.+||..+++.. .+.... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 288 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS 288 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence 014789999998875 322211 22578899999999999888 6999999999999888876542 46899999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310 632 KNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1103)
|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999998999999999999887766653
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.2e-20 Score=205.06 Aligned_cols=257 Identities=14% Similarity=0.114 Sum_probs=187.6
Q ss_pred EEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecC-CCc
Q 001310 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 430 (1103)
Q Consensus 352 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~-~~~ 430 (1103)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999999887553 334788999999999999999986 78999999998 764
Q ss_pred cccceEeccc-cccEEEEEEecCCCceEEEEEc--CCCceEEEeC--CCCceeEEeecCCCceEEEEeeecCCccEEE-E
Q 001310 431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA--VTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 504 (1103)
Q Consensus 431 ~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s 504 (1103)
.. ...+| ...+.+++|+|||+ .+++++ .++.+.||.+ .+++ ...+..+. .+..++|++ ++..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46789999999999 677777 4455666654 4444 44554443 477788854 666666 7
Q ss_pred EECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceE
Q 001310 505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 582 (1103)
Q Consensus 505 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 582 (1103)
++.++.+++|+++.. .....+..+...+.+++|+|+|+++++++.. ++.+.+|++. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3344556667789999999999998877631 2346666654 344556666555 6788
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310 583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 583 ~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 644 (1103)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+|++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988765 569999999887644433222234588899999999998887654
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=8.5e-21 Score=234.24 Aligned_cols=378 Identities=12% Similarity=0.036 Sum_probs=242.8
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001310 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1103)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i 604 (1103)
.++|+|||++++++ . ++.|++||+.+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 57899999655543 2 556999999999988777765411124889999999999998876 789999
Q ss_pred EECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeecc
Q 001310 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1103)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 684 (1103)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++.........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-------------------- 150 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR-------------------- 150 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB--------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC--------------------
Confidence 999998773111111 3478899999999999986 6799999998775543211000
Q ss_pred CCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEEEeec
Q 001310 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 763 (1103)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~ 763 (1103)
...+..|..+ .++.- .......+++|||||+.|++++.+ +.+.+|.+
T Consensus 151 -------------~~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 151 -------------ENKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp -------------TTTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred -------------cCCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 0000000000 00000 000123578999999999988765 44555543
Q ss_pred CCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceee-------
Q 001310 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------- 836 (1103)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~------- 836 (1103)
.... . .+...+..+.+...|.. .....|++||+.+++..
T Consensus 199 ~~~~--------------------~-----------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYG--------------------D-----------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECC--------------------S-----------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccC--------------------C-----------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 2110 0 12233444555444431 11247999999988753
Q ss_pred -EEecCCCCCeeEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCceeEEEe----ccCCCCEE-----EEEEccCC
Q 001310 837 -LTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 898 (1103)
Q Consensus 837 -~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~s~dg 898 (1103)
..+..+...+.+++||| |++++++.... ..|++|| +.+++....+ .+|.+.+. .++|||||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 12335777899999999 78777774432 3588999 8888766555 46777776 88999999
Q ss_pred CEEEE--EeCCC--eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeC-----CeEEEEECCC--
Q 001310 899 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 966 (1103)
Q Consensus 899 ~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d-----~~v~iwd~~~-- 966 (1103)
+.|+. ...+| .|.+||+.+++.. .+. .+. ..+..+.++ +++.|+. +.+ +...+|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 5777787776521 111 111 146777788 8888877 443 6677887653
Q ss_pred ceE-EEEee---CCCCcCeEEEEEccCCCEEEEE-ecC--CcEEEEeCCCceeEEeec
Q 001310 967 LTC-LKQWF---PISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 967 ~~~-~~~~~---~~h~~~v~~l~fs~dg~~l~t~-~~d--g~v~vWd~~~~~~~~~~~ 1017 (1103)
+.. ...+. .+|...+..+.||+|+++++.. +.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 12211 2266778899999999887743 333 468999999888655444
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4.4e-19 Score=197.66 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=184.9
Q ss_pred cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec---CceEEEeecCCCccccccccccccCCee
Q 001310 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1103)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 782 (1103)
.++.+.+|.++..... ...+.. ..+...+..++|+|+|+ +++++. ++.|.+|++...... .
T Consensus 14 ~~~~i~v~~~d~~tg~-~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------~ 77 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKT-LTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------K 77 (347)
T ss_dssp SCCEEEEEEEETTTTE-EEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------E
T ss_pred CCCCEEEEEEcCCCCe-EEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------E
Confidence 3456777777642211 111111 12345667899999999 666654 588999987443210 0
Q ss_pred ecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcC---CceeeEEecCC---------CCCeeE
Q 001310 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM---TFKTILTIMPP---------SPTATS 848 (1103)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~---~~~~~~~~~~~---------~~~i~~ 848 (1103)
+.. +. .+...+..++|+|||++|++++ ++.|.+|++. ..+.+..+... ...+.+
T Consensus 78 --------~~~--~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 78 --------LNT--VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp --------EEE--EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred --------eee--ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 000 00 1456778999999999888886 5889999996 23333333221 224889
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcC-CceeE--EEeccC-CCCEEEEEEccCCCEEEE-EeCCCeEEEEEcCC--Ccee
Q 001310 849 LAFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQ 921 (1103)
Q Consensus 849 l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~dg~~l~s-~s~dg~I~iwd~~~--~~~~ 921 (1103)
++|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778999999998 55432 222322 236788999999996665 55688999999885 5543
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCC-c--eEEEEeeCCCCcCeEEEEEccCCCEEEEE
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTS 996 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1103)
....+............+..++|+|||++|+++ .++.|.+|++.. + +.+.. ...+...+..++|+|||++|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEE
Confidence 333333322211111247889999999988663 578999999972 2 44444 33456678899999999999888
Q ss_pred ecC-CcEEEE--eCCCceeE
Q 001310 997 FVD-GTLSIH--EASNLEVQ 1013 (1103)
Q Consensus 997 ~~d-g~v~vW--d~~~~~~~ 1013 (1103)
+.+ +.|.+| |..+|++.
T Consensus 304 ~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ETTTTEEEEEEECTTTCCEE
T ss_pred EcCCCcEEEEEEeCCCCeEE
Confidence 765 899999 55677665
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.7e-20 Score=221.22 Aligned_cols=272 Identities=12% Similarity=0.072 Sum_probs=197.8
Q ss_pred CcCceEEEecCCCceEEEEEcC-CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEECCCCCEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~l 411 (1103)
..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 457999999999995 566555 9999999997665443 33454 68999999999 777
Q ss_pred EEEeC---CCeEEEEEecC--CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 412 as~~~---d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45567766654 22111 222222 34467899999875666666655 4599999988765554333
Q ss_pred ceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666675 477899988877 78999999887755 55667778899999999999995443 33458999999
Q ss_pred CCCeeEEEEecccccCCceEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 634 (1103)
.+++.. .+.++. ..+..++ |+|||..+++++.++.+++|++ ++..... ...+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CC
Confidence 999877 666554 4555556 9999988888999999999999 6655421 1347789999 99
Q ss_pred CEEEEEECCCe---EEEEEcC
Q 001310 635 TLLAVIANENR---IKILETP 652 (1103)
Q Consensus 635 ~~l~~~~~dg~---i~iw~~~ 652 (1103)
+++++++.+.. +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99988877644 5555544
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.4e-18 Score=193.58 Aligned_cols=249 Identities=12% Similarity=0.135 Sum_probs=171.0
Q ss_pred CCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCce--eeEEecCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001310 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 874 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 874 (1103)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999998765 4444455677889999999 888888877 78999999996
Q ss_pred -Cc--eeEEEecc---------CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC-CCceeeeeeeecCCCcccCCCCceE
Q 001310 875 -SS--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 941 (1103)
Q Consensus 875 -~~--~~~~~l~~---------h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1103)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++......+....+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348899999999977777778999999998 555433222222222 24678
Q ss_pred EEEcCCCCEEEEE--eCCeEEEEECCC--ceEE--EEeeCCC-----CcCeEEEEEccCCCEEE-EEecCCcEEEEeCCC
Q 001310 942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCL--KQWFPIS-----SVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1009 (1103)
Q Consensus 942 l~fs~dg~~l~~~--~d~~v~iwd~~~--~~~~--~~~~~~h-----~~~v~~l~fs~dg~~l~-t~~~dg~v~vWd~~~ 1009 (1103)
++|+|||++++++ .++.+.+|+++. ++.. ....... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 567899999874 5532 2211111 14588899999999875 455689999999973
Q ss_pred -c--eeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEec-CCcEEEEccCCCCCC
Q 001310 1010 -L--EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDT 1077 (1103)
Q Consensus 1010 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~-dg~v~vw~~~~~~~~ 1077 (1103)
+ +.+..+. .++.. +..++|+|+ +++|++++. ++.|.+|++....++
T Consensus 272 ~g~~~~~~~~~-------------------~~~~~--~~~~~~spd-g~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIS-------------------TEGDF--PRDFDLDPT-EAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEE-------------------CSSSC--CCEEEECTT-SSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEe-------------------cCCCC--cCeEEECCC-CCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 3 3333332 11221 246789999 777777665 589999977544444
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.9e-19 Score=195.49 Aligned_cols=244 Identities=11% Similarity=0.068 Sum_probs=181.2
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCC-CccEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRV 402 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~ 402 (1103)
.....+..|...|.+++|||||+ +|++++ ++.|.+||+.+ ++.... ..+| ...|.++
T Consensus 32 ~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~ 90 (297)
T 2ojh_A 32 RKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNNDH 90 (297)
T ss_dssp TEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSCC
T ss_pred CceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccce
Confidence 33455667888999999999999 466665 78999999998 765532 3334 4788999
Q ss_pred EECCCCCEEEEEe--CCCeEEEEEe--cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCce
Q 001310 403 VWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSR 477 (1103)
Q Consensus 403 ~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~ 477 (1103)
+|+|||++|++++ .++.+.||.+ .++. .. .+..+ ..+.+++|+||++. ++++++.|+.+++|++. .+..
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCc
Confidence 9999999999998 3345556655 4443 21 33333 34899999999994 34478889999999864 2334
Q ss_pred eEEeecCCCceEEEEeeecCCccEEEEEE-CCCeEEEEEcC-CCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC---
Q 001310 478 TYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--- 552 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--- 552 (1103)
...+..+...+.+++|++ ++..++.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.
T Consensus 165 ~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp EEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 566777888899999855 667777665 59999999987 44555666667778999999999999998876432
Q ss_pred ----CceeEEEEeCCCCeeEEEE--ecccccCCceEEEEEcCCCCEEEEEeCCC
Q 001310 553 ----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1103)
Q Consensus 553 ----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 600 (1103)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2367999999988764433 3544 6788899999999999877553
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=227.67 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=196.9
Q ss_pred eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc---cEEEEEECCCCCEEEEE
Q 001310 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~las~ 414 (1103)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 66665 589999999999986543 222332 48899999999999998
Q ss_pred eC---------CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecC
Q 001310 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1103)
Q Consensus 415 ~~---------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~ 484 (1103)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. |+.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652101 12 24688999999999 566665 789999999988775432 233
Q ss_pred CCce-----------------EEEEeeecCCccEEEEEECCC----------------------------------eEEE
Q 001310 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1103)
Q Consensus 485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~i 513 (1103)
...| .+++| ++||+.|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 3222 36777 55888999887652 7889
Q ss_pred EEcCCCCee--EE------ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeeEEEE----eccccc
Q 001310 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1103)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1103)
||+.+++.. .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 12 2246667899999999887776544334456799999 8887765554 2333
Q ss_pred CCceE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----
Q 001310 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1103)
Q Consensus 578 ~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----- 643 (1103)
..+. .+.|+|||+.++. ...+| .|++||+.+++ ...+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997655 33444 57777887766 3344322 2335667777 88888777765
Q ss_pred CeEEEEEcCC
Q 001310 644 NRIKILETPE 653 (1103)
Q Consensus 644 g~i~iw~~~~ 653 (1103)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888888754
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=4e-19 Score=201.50 Aligned_cols=309 Identities=10% Similarity=0.011 Sum_probs=202.8
Q ss_pred cccCCccceeEecccCCcCceE-----EEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeee
Q 001310 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1103)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1103)
+++.........|..|...+.. .+|||||+++++++..++ .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 4445556677788888766665 899999996555554467 488889988876542
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEE--EecCCCceEEEE--------
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT-------- 460 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~--~s~d~~~~~l~s-------- 460 (1103)
..+|...+..++|||||++|++++.++.|++||+.+++... ....+...+.... ++||++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34455555577899999999999999999999999986443 2334444444333 489998 4543
Q ss_pred --------------EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC------CeEEEEEcCCCC
Q 001310 461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG 520 (1103)
Q Consensus 461 --------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 520 (1103)
.+.+..|.+||+.+++.. .+..+...+..++|+|. ++..|+..+.+ ..|.++|.+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 224468999999998754 44456677888888541 56777777653 367777776554
Q ss_pred eeEEecCCC-ccEEEEEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEE--EecccccCCceEEEEEcCCCCEEEEE
Q 001310 521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA 596 (1103)
Q Consensus 521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1103)
......... ..+..++|+|||+.|+..+.. +.....|++||+.+++.... +.++...........|+|+|+.|+..
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 433222222 357789999999988765543 22234599999999875332 22210000001123689999988764
Q ss_pred ---------eCCCcEEEEECCCCeeEEEEcCCCCC--------CCCceEEEecCCCEEEEEEC-CCeEEEEEcC
Q 001310 597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1103)
Q Consensus 597 ---------~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~ 652 (1103)
..+..|++||+.+++........... ..+..++|+|||+.|+..+. ++...+|.+.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45678999999988765443332210 03678899999998887764 6666666543
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.6e-17 Score=186.12 Aligned_cols=310 Identities=11% Similarity=0.113 Sum_probs=196.0
Q ss_pred cCCCEEEEEecCCCCceeEEEEeC--CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001310 539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 610 (1103)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~ 610 (1103)
+...++++++.....++.|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 444566666654444556777754 566654433332 3667889999999999998875 7999998765 4
Q ss_pred eeE--EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCc
Q 001310 611 QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1103)
Q Consensus 611 ~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 687 (1103)
+.. .....+ ......+++ +++++++++ .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~--~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTM--GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------- 138 (361)
T ss_dssp EEEEEEEEECS--SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-------------------------
T ss_pred cEEEeeEeccC--CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce-------------------------
Confidence 432 333322 223456666 788777776 578899999864422111100
Q ss_pred eEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1103)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~ 767 (1103)
.+ ...+. +
T Consensus 139 ---------------------------------------------------~~--~~~g~--------~----------- 146 (361)
T 3scy_A 139 ---------------------------------------------------VI--EFKGS--------G----------- 146 (361)
T ss_dssp ---------------------------------------------------EE--ECCCC--------C-----------
T ss_pred ---------------------------------------------------eE--EccCC--------C-----------
Confidence 00 00000 0
Q ss_pred cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCcee------e---
Q 001310 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------I--- 836 (1103)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~------~--- 836 (1103)
+. ....+...+.+++|+|||+++++++ ++.|.+|++..... +
T Consensus 147 -----------------~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 147 -----------------PD----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp -----------------SC----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred -----------------CC----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 00 0001334466788888888666554 57788888764331 1
Q ss_pred ----EEecCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcee--EEEe---ccCCCCEEEEEEccCCCEEEEEeC
Q 001310 837 ----LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGG 906 (1103)
Q Consensus 837 ----~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~s~dg~~l~s~s~ 906 (1103)
.....+......++|+| |++++++++ .++.|.+|++.+++. +..+ ..+......++|+|||++|+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 11223455678999999 888777776 689999999997754 2333 234456789999999999876665
Q ss_pred C--CeEEEEEcC--CCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEE--ECCCceEEEEeeCCCC
Q 001310 907 D--AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIY--EAEELTCLKQWFPISS 978 (1103)
Q Consensus 907 d--g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iw--d~~~~~~~~~~~~~h~ 978 (1103)
+ +.|.+|+++ +++......+.. + ..+..++|+|||++|+++ .++.|.+| |..+|+........+.
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~ 351 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKV 351 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEEC
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeC
Confidence 4 899999996 445333222322 2 257899999999999886 46789996 5557776544222345
Q ss_pred cCeEEEEEc
Q 001310 979 VPISQATFS 987 (1103)
Q Consensus 979 ~~v~~l~fs 987 (1103)
..+.++.|.
T Consensus 352 ~~p~~v~~~ 360 (361)
T 3scy_A 352 DKPVCLKFV 360 (361)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEc
Confidence 678888886
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.4e-17 Score=186.52 Aligned_cols=300 Identities=13% Similarity=0.123 Sum_probs=197.0
Q ss_pred cCCCceEEEEEc----CCCcEEEEEC--CCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310 343 HPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1103)
Q Consensus 343 spdg~~llasgs----~d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 416 (1103)
.+... .+.+|+ .++.|.+|++ .+|+..... .. +...+..++|+|||++|++++.
T Consensus 10 ~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~ 69 (361)
T 3scy_A 10 TDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNE 69 (361)
T ss_dssp GGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEEC
T ss_pred CCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEc
Confidence 34443 456664 3567888876 455543221 11 5667888999999999999987
Q ss_pred C----CeEEEEEecCC-CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe------ec--
Q 001310 417 K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG-- 483 (1103)
Q Consensus 417 d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~-- 483 (1103)
+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ .+
T Consensus 70 ~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 70 FSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp CSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred cCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 5 79999999863 223333334445556778888 7773 3444457889999999754433211 11
Q ss_pred ------CCCceEEEEeeecCCccEEEEEE-CCCeEEEEEcCCCCe------e-------EEecCCCccEEEEEEccCCCE
Q 001310 484 ------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 484 ------~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
+...+.+++|+ ++++++++++ .++.|.+|+++.... . ............++|+|||++
T Consensus 147 ~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 147 PDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp SCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 12234678885 4777665554 589999999886542 1 222334456789999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECC--CCe--eEEE
Q 001310 544 LFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LLTT 615 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~ 615 (1103)
++++.. .++.|.+|++.+++. +..+.....+......++|+|++++|+++.. ++.|.+|++. +++ .+..
T Consensus 225 l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 225 AYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 887763 256799999987755 3333333322345789999999999977665 4899999985 444 3444
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcC--CCCeeEec-cccccceeeeEEe
Q 001310 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSVN 673 (1103)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~i~~~~~~ 673 (1103)
+.. ...+..++|+|||++|++++ .++.|.+|++. +++..... ..+...+.|+.|.
T Consensus 302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 443 13468999999999998888 57899996554 55544433 2233455555553
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=4.6e-18 Score=189.58 Aligned_cols=299 Identities=9% Similarity=0.008 Sum_probs=195.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEeccc
Q 001310 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV 662 (1103)
Q Consensus 584 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~ 662 (1103)
+++++++..+++++.++.|++||..+++.+..+..+.. ..+..++|+|+|++++++ ..++.|.+||..+++....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45778888899999999999999999999888876531 136889999999876554 4688999999987754432211
Q ss_pred cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1103)
Q Consensus 663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 742 (1103)
... + ......+..++|
T Consensus 84 ~~~------------------------------~----------------------------------~~~~~~~~~~~~ 99 (349)
T 1jmx_B 84 SSV------------------------------P----------------------------------GEVGRSMYSFAI 99 (349)
T ss_dssp CCS------------------------------T----------------------------------TEEEECSSCEEE
T ss_pred ccc------------------------------c----------------------------------ccccccccceEE
Confidence 000 0 000112334556
Q ss_pred ecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC
Q 001310 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG 822 (1103)
Q Consensus 743 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d 822 (1103)
+|+|+++++++.+.... ...+ ...+
T Consensus 100 spdg~~l~~~~~~~~~~-----------------------------------------------------~~~~--~~~~ 124 (349)
T 1jmx_B 100 SPDGKEVYATVNPTQRL-----------------------------------------------------NDHY--VVKP 124 (349)
T ss_dssp CTTSSEEEEEEEEEEEC-----------------------------------------------------SSCE--EECC
T ss_pred CCCCCEEEEEccccccc-----------------------------------------------------cccc--ccCC
Confidence 66666555554331000 0000 0114
Q ss_pred CeEEEEEcCCcee---eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC------------
Q 001310 823 GVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------------ 887 (1103)
Q Consensus 823 g~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~------------ 887 (1103)
+.|.+||+.+++. +..+. +...+.+++|+| +++ +++++ +.|++||+.+++.+..+..+..
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence 7899999988543 33343 334688999999 787 55554 3499999999988877754320
Q ss_pred ------------CEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC-CCCEEEE
Q 001310 888 ------------RVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL 953 (1103)
Q Consensus 888 ------------~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~ 953 (1103)
....+++++|+........ ...+..++..+++......- .. ...+..++|+| ||+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DL------TELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-EC------SSCEEEEEECSSCTTEEEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-cC------CCcceeeEecCCCCCEEEE
Confidence 3455777766532211111 11122355555543322111 11 12578999999 9999998
Q ss_pred EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 954 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 954 ~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 273 ~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 273 V-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp E-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred E-cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 8 899999999999988775433 357789999999999988889999999999999888776
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.2e-18 Score=214.72 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=186.9
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc-----cEEEEEECCCCC
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~spdg~ 409 (1103)
.....++|+|||+ +++++ |++|++||+.+++.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999986543 334432 234589999999
Q ss_pred EEEEEeCC---------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
+||+++.+ +.+.+||+.+++... +..|...+...+|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 556799999987443 557788899999999999 466664 78999999988875542
Q ss_pred -eecCCCce-----------------EEEEeeecCCccEEEEEECCCe-EEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310 481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1103)
Q Consensus 481 -~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1103)
..++...+ .++.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22333222 23556 568889998876655 8888754221110 123456667777766
Q ss_pred CEEEEEecCCCCceeEEEEeCCC---Ce--eEEEEeccc---ccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCC
Q 001310 542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK 609 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 609 (1103)
.. .....|++||+.+ ++ ....+.... .+...+..++|+|||+.++... .+..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 1244599999998 73 222333210 1236789999999998766643 234799999998
Q ss_pred Ce----eE--EEE--cCCCCCCC---CceEEEecCCCEEE-EEEC-C--CeEEEEEcCCCC
Q 001310 610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 655 (1103)
Q Consensus 610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~g~~l~-~~~~-d--g~i~iw~~~~~~ 655 (1103)
++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|.+|+..++.
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 87 21 111 22221111 23789999999887 6654 3 457777776553
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=5.4e-19 Score=211.94 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=176.0
Q ss_pred CccEEEEEECCCCCEEEEEeC-CCeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcC---CCceEEE
Q 001310 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~---d~~i~iw 470 (1103)
..+|.+++|||||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776532 344555 68999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
.+.. +... .+.... .+...+|++++++..+++++.++.. +||+.+++.......+. .+++|||||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5433 3322 443222 3445677777665566666555554 99998876655443333 788999999999988
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEEcCCCCCCCC
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1103)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cCh
Confidence 765444477999999988765 555555 6789999999999999888888 8999999998877 554332 235
Q ss_pred ceEE--------EecCCCEEEEEECCCeEEEEEc
Q 001310 626 PRIC--------FNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 626 ~~v~--------~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.2e-17 Score=205.82 Aligned_cols=364 Identities=9% Similarity=0.004 Sum_probs=239.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC-CCC--ceEEEecCCCEEEEEECC---------CeEE
Q 001310 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PEN--PRICFNKNGTLLAVIANE---------NRIK 647 (1103)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~s~~g~~l~~~~~d---------g~i~ 647 (1103)
....+.|+|++.+++++ |++|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35578999999888776 899999999999988777765421 122 348999999999998876 5667
Q ss_pred EEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeee
Q 001310 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 727 (1103)
Q Consensus 648 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 727 (1103)
+||+.+++.. .+..+...+...+|+ |||+.++.+ .++.|.+|+...+... .+.
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~S----------------------PdG~~la~~-~~~~i~~~~~~~~~~~---~lt 148 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWS----------------------PVGHKLAYV-WNNDIYVKIEPNLPSY---RIT 148 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEEC----------------------SSTTCEEEE-ETTEEEEESSTTSCCE---ECC
T ss_pred EEECCCCcEE-EcccCCCcceeeEEC----------------------CCCCEEEEE-ECCeEEEEECCCCceE---EEc
Confidence 9999988654 355555666666775 788888777 4578999998754322 111
Q ss_pred ccCccccc-----------------cEEEEEEecCCcEEEEeecC-ceEEEeecCCCccccccccccccCCeeecCCCCC
Q 001310 728 LPSKVKAN-----------------KISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789 (1103)
Q Consensus 728 ~~~~~~~~-----------------~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1103)
. .++.. ....+.|||||+.|+....| +.+.+|++..... +.
T Consensus 149 ~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~ 207 (740)
T 4a5s_A 149 W--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES 207 (740)
T ss_dssp S--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT
T ss_pred C--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC
Confidence 1 11211 22358999999999988765 4477776532110 00
Q ss_pred ceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCC---ce--eeEEec------CCCCCeeEEEEcCCCCCE
Q 001310 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK--TILTIM------PPSPTATSLAFNPHDNNV 858 (1103)
Q Consensus 790 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~d~~~ 858 (1103)
.+...+..+.+.+.|... ...+|.+||+.+ ++ ....+. ++...+..++|+| |+++
T Consensus 208 ----------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~ 273 (740)
T 4a5s_A 208 ----------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERI 273 (740)
T ss_dssp ----------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEE
T ss_pred ----------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeE
Confidence 133455666776666421 123689999998 73 233343 2677899999999 7886
Q ss_pred EEEEeC----CCeEEEEEcCCce----eE--EEe--ccCCCCEE-----EEEEccCCCEEE-EEeC-C--CeEEEEEcCC
Q 001310 859 IAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----GLVFSDALNILV-SSGG-D--AQIFVWDVDG 917 (1103)
Q Consensus 859 lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~-----~l~~s~dg~~l~-s~s~-d--g~I~iwd~~~ 917 (1103)
++.... +..|++||+.+++ +. ..+ .+|.+.|. .++|||||+.|+ ..+. + ..|++||+.+
T Consensus 274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 665532 3489999999887 22 222 44665554 789999999887 6654 3 4688899987
Q ss_pred CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeC-------CeEEEEECCCceEEEEeeC---CCCcCeEEEEE
Q 001310 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-------THLAIYEAEELTCLKQWFP---ISSVPISQATF 986 (1103)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d-------~~v~iwd~~~~~~~~~~~~---~h~~~v~~l~f 986 (1103)
++.. +...+.. .+..+. ++|++.|+. +.. ..|+..++..+.....+.. +....+..+.|
T Consensus 354 ~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~ 423 (740)
T 4a5s_A 354 KDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF 423 (740)
T ss_dssp SSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred CceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence 6532 2233322 344443 355777765 432 2566666665544322221 23467889999
Q ss_pred ccCCCEEEEEecC---CcEEEEeCCCceeEEeec
Q 001310 987 SCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 987 s~dg~~l~t~~~d---g~v~vWd~~~~~~~~~~~ 1017 (1103)
|||+++++..... ..+.+++..+++....+.
T Consensus 424 S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp CTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 9999987755433 468889998887654443
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=4.5e-18 Score=189.68 Aligned_cols=283 Identities=11% Similarity=0.059 Sum_probs=195.0
Q ss_pred eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE-EeC
Q 001310 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYS 416 (1103)
Q Consensus 338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las-~~~ 416 (1103)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888887 788999999999999999987654211 12225778999999997654 456
Q ss_pred CCeEEEEEecCCCccccceEec-cc-----cccEEEEEEecCCCceEEEEEcCC------------CceEEEeCCCCce-
Q 001310 417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 477 (1103)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~l~-~h-----~~~v~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~- 477 (1103)
++.|.+||+.+++... .+. ++ ...+.+++|+|||+ .+++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8899999999886543 222 22 33478999999999 56666654 8999999988543
Q ss_pred --eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---------------------c---c
Q 001310 478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------------------L---G 531 (1103)
Q Consensus 478 --~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~ 531 (1103)
+..+. +...+.+++|++ ++. +++++ +.|.+||..+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 334577788854 666 55544 349999998887766554332 0 2
Q ss_pred EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE-EecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 001310 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|++||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 345666665532211100 011233466666653221 1122 35788999999 99999888 88999999999
Q ss_pred CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
++.+..+.... .+.+++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888876542 36799999999999888889999999999887776654
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=1.5e-18 Score=197.85 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.4
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE-
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 412 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la- 412 (1103)
...+..+++++++. ++++|+.++ ++||+...-...... ..+.. ....+.......|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKP---GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCT---TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhccc---ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 678888777 899886421110000 00000 000000011124677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------CccccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310 413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1103)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||+.++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999875 222223456789999999999998 56 899999999999999999988777
Q ss_pred eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-------CccEEEEEEccCCCEEEEEecCC--
Q 001310 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 551 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~-- 551 (1103)
..+|...|.+++|++ ++.+|++|+.||.|++||.+ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 788999999999965 67899999999999999998 4444444332 23799999999988887654321
Q ss_pred -CCceeEEEEeCCCC
Q 001310 552 -EGESFLVEWNESEG 565 (1103)
Q Consensus 552 -~~~~~i~iwd~~~~ 565 (1103)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234889998764
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=1.3e-18 Score=198.20 Aligned_cols=199 Identities=13% Similarity=0.114 Sum_probs=151.7
Q ss_pred CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee----------eEE-----ecCCCCCeeEEEEcCCCCCEEE----EE
Q 001310 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------ILT-----IMPPSPTATSLAFNPHDNNVIA----IG 862 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~----------~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 862 (1103)
...+..+++++++.++++++.+.+++|+...... +.. ...+...|++++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 4467899999999999999865599988642111 111 112456799999999 889999 78
Q ss_pred eCCCeEEEEEcCCc--------e---eEEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC
Q 001310 863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1103)
Q Consensus 863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1103)
+.|+.|+|||+.++ + .+..+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++... ....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-----~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-----CATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-----EEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-----eecc
Confidence 89999999998765 2 24566789999999999998 899999999999999999986422 1122
Q ss_pred CcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeC------CCCcCeEEEEEccCCCEEEEEe-cCC--
Q 001310 931 GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDG-- 1000 (1103)
Q Consensus 931 ~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~dg-- 1000 (1103)
+|.. .|.+++|+|+|++|+++ .|+.|++||++ ++....+.. .|...|.+++|++++.++++.+ .||
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 2333 79999999999999995 78999999998 555444221 1234899999999998876543 443
Q ss_pred ----cEEEEeCCCc
Q 001310 1001 ----TLSIHEASNL 1010 (1103)
Q Consensus 1001 ----~v~vWd~~~~ 1010 (1103)
.+++|++...
T Consensus 266 ~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 266 ETSPDVVMALLPKK 279 (434)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCCceEEEEeccC
Confidence 3899999865
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=8e-18 Score=190.76 Aligned_cols=294 Identities=11% Similarity=0.017 Sum_probs=198.6
Q ss_pred ccCCCccEEE-----EEECCCCCEEEEEeC-CC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC
Q 001310 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1103)
Q Consensus 392 ~~~h~~~V~~-----~~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~ 463 (1103)
+..|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5567666666 899999999999987 66 48888998876443 2345555555778999999 7888888
Q ss_pred CCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE----------------------CCCeEEEEEcCCCCe
Q 001310 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1103)
Q Consensus 464 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 521 (1103)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999999887777777766666665567888877432 346799999988765
Q ss_pred eEEecCCCccEEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC
Q 001310 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1103)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 598 (1103)
.... .+...+..++|+| ||+.|+.+..... ....|+++|...++......... ...+...+|+|||+.|+..+.
T Consensus 181 ~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 4433 3455688999999 9999988775321 14468899987665443333221 125778899999998866443
Q ss_pred -CC----cEEEEECCCCeeEEEEcCCCC--C-CCCceEEEecCCCEEEEE---------ECCCeEEEEEcCCCCeeEecc
Q 001310 599 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 599 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~g~~l~~~---------~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
++ .|++||+.+++.......... . ......+|+|||+.|+.. ..+..|.+||+.+++.. .+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~ 336 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVA 336 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eec
Confidence 22 399999999875433222210 0 012345899999988864 44668999999887543 333
Q ss_pred cccc-----------ceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec-ccccccccccc
Q 001310 662 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEKPL 716 (1103)
Q Consensus 662 ~~~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~-~d~~i~~w~~~ 716 (1103)
.+.. .+..++| +|||+.++..+ .++...+|.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~----------------------spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSF----------------------TPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEE----------------------CTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCcccccccccccCCCCccC----------------------CCCCCEEEEEecCCCceeEEEEE
Confidence 3322 2333344 47787776544 46666677654
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=4.6e-17 Score=182.20 Aligned_cols=248 Identities=8% Similarity=0.099 Sum_probs=168.4
Q ss_pred CCCeeEEEEecCCCEEEEEcCCeEEEEEcC-CceeeEEecC-CCCCeeEEEEcCCCCC--EEEEEe-------------C
Q 001310 802 QEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------D 864 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~lasg~-------------~ 864 (1103)
...+..++++|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ ++++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346788999999999988875599999997 7776543321 112356789999 787 455553 6
Q ss_pred CCeEEEEEcC-CceeEEEec----cCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcC-CCceeeeeeeecCCCcccCCC
Q 001310 865 DSTILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAP 937 (1103)
Q Consensus 865 dg~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 937 (1103)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... + ..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CC
Confidence 8999999997 466544443 25567999999999998887764 6799999998 67643322222211 0 12
Q ss_pred CceEEEEcCCCCEEEEE--eCCeEEEEECC--CceEEE---Ee--eC----CCCc------CeEEEE-EccCCCEEEEEe
Q 001310 938 SETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSF 997 (1103)
Q Consensus 938 ~v~~l~fs~dg~~l~~~--~d~~v~iwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~ 997 (1103)
.+..++|+|||++|+++ .++.|.+|+++ +|+... .+ .. +|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 58899999999999885 36789999865 565421 11 21 1222 588999 999999988776
Q ss_pred cCC------cEEEEeCC-CceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCC--CCcEEEEEec-CCcEE
Q 001310 998 VDG------TLSIHEAS-NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPL--KPTQFAVGLT-NGEVY 1067 (1103)
Q Consensus 998 ~dg------~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~-dg~v~ 1067 (1103)
.+. +|.+|++. ++++........ .+..... .++++|. ++++|++++. ++.|.
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----------------~~~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~ 335 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSP----------------TPTSGGH--SNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEE----------------CSSCCTT--CCCEEECTTCTTEEEEECSSSCEEE
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeee----------------cCCCCcc--cceecCCCcCCCEEEEEEcCCCeEE
Confidence 432 89999996 666543111000 0111111 3466772 3788888876 48999
Q ss_pred EEccC
Q 001310 1068 VIEPN 1072 (1103)
Q Consensus 1068 vw~~~ 1072 (1103)
+|++.
T Consensus 336 v~~~~ 340 (365)
T 1jof_A 336 IYRWK 340 (365)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99984
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.7e-16 Score=176.26 Aligned_cols=296 Identities=11% Similarity=0.118 Sum_probs=200.8
Q ss_pred CCCceEEEEE-----cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe---
Q 001310 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--- 415 (1103)
Q Consensus 344 pdg~~llasg-----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~--- 415 (1103)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3566544443 2378999999999987654 2234444 899999999999986
Q ss_pred -------CCCeEEEEEecCCCccccceEecc---ccccEEEEEEecCCCceEEEEEc--CCCceEEEeCCCCceeEE-ee
Q 001310 416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1103)
Q Consensus 416 -------~d~~i~iwd~~~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-~~ 482 (1103)
.+++|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 357899999998776553322111 223466899999999 455554 368999999999998887 54
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-E------ecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-D------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1103)
... . ..+.+.|.. ...+++.+.||.+.+|+++...... . +.....+ ..+.+++++..++..+. ++
T Consensus 150 ~~~-~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AAG-C-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GTT-E-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CCC-c-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 322 1 223444432 3678889999999999986533222 1 1111222 23345677877776654 45
Q ss_pred eEEEEeCCCCee--EEEEeccc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeeEEE
Q 001310 556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1103)
Q Consensus 556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~ 615 (1103)
.++++|+..+.. ...+.... .. ......++|+|++++++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 699999875532 22221100 00 011123689999988887643 35899999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC--CeeEeccccccceeeeEEecC
Q 001310 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPI 675 (1103)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~ 675 (1103)
+..+. +.+++|+|||++|+++.. +.|.+||..++ +.+..+.........++++|+
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 98763 789999999999998887 99999999999 888776555566666777654
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=4.5e-17 Score=185.19 Aligned_cols=299 Identities=10% Similarity=-0.007 Sum_probs=193.5
Q ss_pred ccceeEecccCCcC-----ceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCC
Q 001310 323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1103)
Q Consensus 323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 395 (1103)
....++.|..+... +..++|||||++++++...+ ..|.+||+.+++... +..+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~ 78 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG 78 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence 34455666655433 88999999999755555443 368888998876543 2223
Q ss_pred Ccc-EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEE-------------------EEEecCCCc
Q 001310 396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ 455 (1103)
Q Consensus 396 ~~~-V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------~~~s~d~~~ 455 (1103)
... ...+.|||||++|++++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 333 3337899999999999999999999999876432 22223222222 356778773
Q ss_pred eEEEEE-----cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC------CeEEEEEcCCCCeeEE
Q 001310 456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD 524 (1103)
Q Consensus 456 ~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~ 524 (1103)
++.. ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||++.......
T Consensus 156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 3332 45678999999988765544 46677888888652 45556665543 3588888876543332
Q ss_pred ecCC-CccEEEEEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC-CCCEEEEEe----
Q 001310 525 YDAP-GLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG---- 597 (1103)
Q Consensus 525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~---- 597 (1103)
.... ...+..++|+|||++|+.++.. +...+.|++||+.+++....... . ... +.|+| +++.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence 2221 3357889999999988776543 21225599999998876543322 1 123 88999 999888754
Q ss_pred ------------CCCcEEEEECCCCeeEEEEcCCCCC--------CCCceEEEecCCCEEEEEEC-CCeEEEE--EcCCC
Q 001310 598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 654 (1103)
Q Consensus 598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-dg~i~iw--~~~~~ 654 (1103)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222100 02466899999999887775 4554555 44444
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=6.6e-16 Score=171.54 Aligned_cols=313 Identities=10% Similarity=0.097 Sum_probs=211.6
Q ss_pred CccEEEEEE------CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001310 498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 565 (1103)
Q Consensus 498 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~ 565 (1103)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 3789999999988877776665444 8999999999998863 1223567999999999
Q ss_pred eeEEEEecccc---cCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEE-EcCCCCCCCCceEEEecCC-CEEE
Q 001310 566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 638 (1103)
Q Consensus 566 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~g-~~l~ 638 (1103)
+.+..+..... .......++++|+|++++++.. +++|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 98888764320 1234667899999999998863 68999999999998887 65432 2335677765 6778
Q ss_pred EEECCCeEEEEEcCC-CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310 639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 717 (1103)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 33221100 001111110
Q ss_pred cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCC
Q 001310 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1103)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1103)
.. ..+.+++++..++..+.++.+.++|+....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011224556666666667778888765332100 001111100000 000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEc------------CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001310 798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1103)
Q Consensus 798 ~~~~~~~v~~l~~s~d~~~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1103)
. .......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 251 ~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp C--EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred c--ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0 011122378999988777653 2479999999999999998776 99999999 8889998887
Q ss_pred CeEEEEEcCCc--eeEEEeccCCCCEEEEEEccCCC
Q 001310 866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 899 (1103)
Q Consensus 866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 899 (1103)
++|.+||..++ +.+..+..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877778889999999986
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.4e-16 Score=178.13 Aligned_cols=250 Identities=9% Similarity=0.056 Sum_probs=172.5
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEEec-CCCccccceEeccccccEEEEEEecCCCceEEEEEc-----------
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~----------- 462 (1103)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999998887 89999997 665332 1111111 235568999999853455553
Q ss_pred --CCCceEEEeCC-CCceeEEee----cCCCceEEEEeeecCCccEEEEEE-CCCeEEEEEcC-CCCeeE--Eec--CCC
Q 001310 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 529 (1103)
Q Consensus 463 --~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~--~~~--~~~ 529 (1103)
.++++.+|++. +|+....+. .+...+.+++|+| +|+++++++ .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554443 2456788888854 677777765 46899999998 555432 232 235
Q ss_pred ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeeEE---EEeccc----ccCC------ceEEEE-EcCCCCEE
Q 001310 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQ----LQHN------SVSVVH-FDTAKDQI 593 (1103)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~----~~~~------~v~~~~-~~~~~~~l 593 (1103)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+.... .+.. .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67889999999999988763 24568887654 565432 222211 0111 488999 99999998
Q ss_pred EEEeCC-C-----cEEEEECC-CCeeEEE---EcCCCCCCCCceEEEec---CCCEEEEEECC-CeEEEEEcCCC
Q 001310 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1103)
Q Consensus 594 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~g~~l~~~~~d-g~i~iw~~~~~ 654 (1103)
+++..+ + .|.+|++. +++.... ...+ ......++|+| ||++|++++.+ +.|.+|+....
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876532 2 89999996 5665432 2222 22357899999 89999999864 89999998765
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.9e-14 Score=167.52 Aligned_cols=328 Identities=11% Similarity=0.109 Sum_probs=223.9
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEEcCCCCCCCCceEEEe
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
++.|.++|..+++.+..+... ..+..+.|+||++++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence 667999999999999888753 356789999999999999999999999996 788888776532 24789999
Q ss_pred ----cCCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1103)
Q Consensus 632 ----~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1103)
|||++++++.. ++++.++|..+.+.+..+......+ ++.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~------- 292 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ------- 292 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence 69999887765 5899999998887766543111000 000
Q ss_pred ccccccccccccCCccceeeeccCccc-cccEEEEEEecCCcEEEEe-ecCceEEEeecCCCccccccccccccCCeeec
Q 001310 707 ENKSEVEKPLFARPSECQSLLLPSKVK-ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784 (1103)
Q Consensus 707 d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 784 (1103)
..| ...+..+.+++++..++.. ...|.|.++|...... +.+..
T Consensus 293 ------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------~~v~~ 337 (567)
T 1qks_A 293 ------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTE 337 (567)
T ss_dssp ------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEE
T ss_pred ------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------ceeee
Confidence 001 1246667778876655444 3458888887654211 00100
Q ss_pred CCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC-----CCCCeeEEEEcCCCCC
Q 001310 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNN 857 (1103)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~ 857 (1103)
+ ........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-.. -++|+.+.
T Consensus 338 -----------i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~ 402 (567)
T 1qks_A 338 -----------I---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGP 402 (567)
T ss_dssp -----------E---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEE
T ss_pred -----------e---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCc
Confidence 0 1233456789999999988876 58899999999998777653 2221112 25783355
Q ss_pred EEEEEe-CCCeEEEEEcCC-------ceeEEEeccCCCCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCce--
Q 001310 858 VIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI-- 920 (1103)
Q Consensus 858 ~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~-- 920 (1103)
+.+++. .+++|.++|..+ .+.++++......-..+.++||+++|.+... .+.|.++|+.+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 555553 568999999988 6677888765443345778999999887663 35899999987521
Q ss_pred -e-eeeeeecC--CCcccCCCCceEEEEcCCCCEEEEE--e----CCeEEEEECCCceEEEEee
Q 001310 921 -Q-TCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV--H----ETHLAIYEAEELTCLKQWF 974 (1103)
Q Consensus 921 -~-~~~~~~~~--~~~~~~~~~v~~l~fs~dg~~l~~~--~----d~~v~iwd~~~~~~~~~~~ 974 (1103)
. ....+... .+.......+..+.|+|||+.+.++ . ++.|.|+|..+++....+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 1 11222210 0000011258899999999998875 2 6899999999999887643
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=4.7e-14 Score=164.22 Aligned_cols=325 Identities=13% Similarity=0.140 Sum_probs=221.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC--CCCeeEecccccc
Q 001310 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1103)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~ 665 (1103)
+.+..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456667789999999999999998887542 35689999999999999999999999985 544333221
Q ss_pred ceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe--
Q 001310 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 743 (1103)
Q Consensus 666 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-- 743 (1103)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 01224578899
Q ss_pred --cCCcEEEEeecC-ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCC------CC-CCCeeEEEEecC
Q 001310 744 --NGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN 813 (1103)
Q Consensus 744 --~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~d 813 (1103)
|||++++++... +.+.++|....+. +........ .| ...+..+..+++
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~----------------------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEP----------------------KKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE----------------------EEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcE----------------------EEEEeccccccccccccCCCceEEEEEcCC
Confidence 699988877764 8888887544321 111111000 01 236778999998
Q ss_pred CCEEEEEc--CCeEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcCCceeEEEecc----
Q 001310 814 DAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG---- 884 (1103)
Q Consensus 814 ~~~l~~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~---- 884 (1103)
+..++... .|.|.++|..+.+.+ ..+. .......+.|+| ++++++++. .+++|.++|+.+++.+..+.-
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 77666553 589999998865432 2222 334667889999 788776654 678999999999988766643
Q ss_pred -CCCCEEEEEEccCCCE-EEEEe-CCCeEEEEEcCCCc-----eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe-
Q 001310 885 -HSKRVTGLVFSDALNI-LVSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 955 (1103)
Q Consensus 885 -h~~~V~~l~~s~dg~~-l~s~s-~dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~- 955 (1103)
|.+.-..+ ++|++.. ++++. .+++|.++|.++++ ......+....+ .-..+.++|++++|.+..
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence 43322222 6787544 44443 46899999998732 112223333211 234578999999999853
Q ss_pred -------CCeEEEEECCCc-----eEE-EEee-------CCCCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCc
Q 001310 956 -------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1010 (1103)
Q Consensus 956 -------d~~v~iwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~~~ 1010 (1103)
.+.|.++|+.+. ... ..+. ......+..+.|++||+.+.++. .++.|.|+|..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 1111 11245789999999999887763 3799999999999
Q ss_pred eeEEeec
Q 001310 1011 EVQCRIL 1017 (1103)
Q Consensus 1011 ~~~~~~~ 1017 (1103)
++..++.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9988877
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=1.4e-15 Score=185.64 Aligned_cols=294 Identities=10% Similarity=0.002 Sum_probs=194.8
Q ss_pred EecccCCcCceEEEecCCCceEEEEE--cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE-----
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg--s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----- 400 (1103)
..+.+|...|..++||+++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999875 56666 5678899999644433322 444555555
Q ss_pred ----EEEEC--CCCCE-EEEEeC-CCeEEEEEec--C-CCccccceEecc-----ccccEEEEEEecCCCceEEEEEcCC
Q 001310 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1103)
Q Consensus 401 ----~~~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~~~~s~d~~~~~l~s~~~d 464 (1103)
..+|+ |||++ ||.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 55565 99999 887654 4556666655 2 33 22 3444 677899999999999 67777666
Q ss_pred ----------CceEEEeCCC------CceeEEee-cCCCceEEEEeeecCCccEEEEEECC--------CeEEEEEcC-C
Q 001310 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S 518 (1103)
Q Consensus 465 ----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~ 518 (1103)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.+ ..|.+||++ +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 44 44555 55666777777 5588899887755 379999998 4
Q ss_pred C---CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCC-----ceEEEEEcCCC
Q 001310 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1103)
Q Consensus 519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 590 (1103)
+ ........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|++++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 333333444678899999999995555533 3344788999878776554443321000 15678899999
Q ss_pred CEEEEEeCCCcEEEE--ECCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCC--eEEEEEcCCCCee
Q 001310 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 657 (1103)
Q Consensus 591 ~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~--l~~~~~dg--~i~iw~~~~~~~~ 657 (1103)
..+++++. +.+++| |..+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.++++.+++..
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99999988 999999 665565 55555442 234444 1444443 34445554 4555566666543
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=4.3e-15 Score=165.26 Aligned_cols=262 Identities=9% Similarity=0.104 Sum_probs=177.7
Q ss_pred CceEEEecCCCceEEEEE--------cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasg--------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
.+..+++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677778 888655442 125779999998876432 2 46788999999
Q ss_pred CCEEEEEeCC---C--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-------------------
Q 001310 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1103)
Q Consensus 408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~------------------- 463 (1103)
|++||+++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988654 3 47788888765332 333334 999999999994 555442
Q ss_pred --------CCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCC-------eEEEEEcCCCCeeEEecCC
Q 001310 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1103)
Q Consensus 464 --------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~ 528 (1103)
...|.+||+.+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++++ ....+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCCC-ceEEeccC
Confidence 25799999999887555554 3 67777885 466 777776542 4455555533 33333323
Q ss_pred CccEEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeeEEEEecccccCCceEE-EEEcCCCCEEEEEeCCCcEE
Q 001310 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1103)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~ 603 (1103)
..+..+ +|||++|+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444444 999999988775331 245789999 665544444434 56775 8999 88 888899999999
Q ss_pred EEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE-EEEEcC
Q 001310 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1103)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i-~iw~~~ 652 (1103)
+| +.+++....... ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444433 23578899999 677777777654 777766
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=6.8e-16 Score=175.39 Aligned_cols=244 Identities=9% Similarity=-0.010 Sum_probs=165.6
Q ss_pred EEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEecccccc-EEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 399 V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
+..++|||||++||.+... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6778999999999887543 368889998875332 2333333 33478999999 788888888999999999
Q ss_pred CceeEEeecCCCceEE---EEe--------------eecCCccEEEEE-----ECCCeEEEEEcCCCCeeEEecCCCccE
Q 001310 475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i 532 (1103)
++.......+...... +++ ..++++..++.. ..+..|.+||+.+++..... .....+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876666555443222 111 123344444433 35668999999887655444 345578
Q ss_pred EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001310 533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 604 (1103)
Q Consensus 533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 604 (1103)
..+.|+| +++.++.++..... ...|++||+.+++......... ...+..++|+|++++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642210 1569999987765433333111 2357889999999988876543 44999
Q ss_pred EECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEE----------------CCCeEEEEEcCCCCe
Q 001310 605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 656 (1103)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~----------------~dg~i~iw~~~~~~~ 656 (1103)
||+.+++......... .. ++|+| ||+++++++ .++.|.+||..+++.
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887654433221 22 89999 999888765 347899999987753
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=4.2e-14 Score=152.19 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=174.7
Q ss_pred CCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecC------CCCCeeEEEEc-CCCCCEEEEEeC-CCeEEE
Q 001310 800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILI 870 (1103)
Q Consensus 800 ~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~i 870 (1103)
++-..+.+++++++++++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEE
Confidence 3556788999999999888865 6899999987 666666542 33578899994 5 7777666643 889999
Q ss_pred EEcCCceeEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310 871 YNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1103)
Q Consensus 871 wd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 949 (1103)
|| .+++.+..+.. +...+.+++++|+|+++++...++.|.+||... +... .+... +.. ..+..++++++|+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~~-~~~---~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGCS-KHL---EFPNGVVVNDKQE 176 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEECT-TTC---SSEEEEEECSSSE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCCC-Ccc---CCcEEEEECCCCC
Confidence 99 66777766643 456789999999999888888889999999754 3221 12111 111 2578999999999
Q ss_pred EEEEE-eCCeEEEEECCCceEEEEeeC-CCCcCeEEEEEccCCCEEEEEecCC-cEEEEeCCCceeEEeeccccccCCCC
Q 001310 950 RFLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1103)
Q Consensus 950 ~l~~~-~d~~v~iwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~dg-~v~vWd~~~~~~~~~~~~~~~~~~~~ 1026 (1103)
++++. .++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+||. +++.+..+..
T Consensus 177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~-------- 246 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES-------- 246 (286)
T ss_dssp EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--------
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc--------
Confidence 77775 58899999975 555555322 2346789999999999888887775 9999995 4665555541
Q ss_pred CCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 1027 SHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 1027 ~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
+.....+..++++|+ ++++++ +.|++|++|++..
T Consensus 247 -----------~~~~~~~~~i~~~~~-g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 247 -----------KVKHAQCFDVALMDD-GSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp -----------SSCCSCEEEEEEETT-TEEEEE-ETTTEEEEEECSC
T ss_pred -----------cCCCCcceeEEECCC-CcEEEE-CCCCeEEEEEccc
Confidence 111123457788887 777766 6799999999843
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.6e-14 Score=158.68 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=184.7
Q ss_pred cCceEEEecCCCceEEEEEcCC------------------------CcEEEEECCCCCeeeeeeeeEeeccccccceeee
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1103)
+.|.+++++|+|+ ++++.+.+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 5899999999998 67777766 47999999888865420
Q ss_pred eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCC-ccccceEe---------ccccccEEEEEEec-CCCceEEE
Q 001310 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1103)
Q Consensus 391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~~~~s~-d~~~~~l~ 459 (1103)
-.++-..+..++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 22455678999999999988888889999999986542 222 33 24455789999999 677 677
Q ss_pred EEc-CCCceEEEeCCCCceeEEeecCC----------CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--
Q 001310 460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 526 (1103)
Q Consensus 460 s~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 526 (1103)
+.+ .++.|++|| .+|+.+..+.... .....+++.+. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 775 689999999 7788777774322 33788888642 26788888889999999998777776663
Q ss_pred CCCccEEEEEEccCCCEEEEEecC---CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310 527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1103)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 603 (1103)
.....+..++++| +..+...+.. ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 4444433210 12245799999999999988853222336789999999997777788899999
Q ss_pred EEECCC
Q 001310 604 IWDMNK 609 (1103)
Q Consensus 604 iwd~~~ 609 (1103)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2.6e-14 Score=157.00 Aligned_cols=248 Identities=11% Similarity=0.068 Sum_probs=181.9
Q ss_pred CCCCeeEEEEecCCCEEEEEcCC-------------------------eEEEEEcCCceeeEEec-CCCCCeeEEEEcCC
Q 001310 801 SQEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPH 854 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~ 854 (1103)
.-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+-.....++++|
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~- 100 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT- 100 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-
Confidence 34678999999999999887643 69999999898877665 3446789999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCce-eEEEe---------ccCCCCEEEEEEcc-CCCEEEEEe-CCCeEEEEEcCCCceee
Q 001310 855 DNNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQT 922 (1103)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~s-~dg~I~iwd~~~~~~~~ 922 (1103)
+++++++...++.|++|+..... .+..+ .++......++++| +|.++++.+ .++.|++|+.+ ++...
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEE
Confidence 88888888889999999976542 45555 34555789999999 888888886 69999999954 44322
Q ss_pred eeeeecC-----CCcccCCCCceEEEEcCC-CCEEEEE-eCCeEEEEECCCceEEEEee-CCCCcCeEEEEEcc------
Q 001310 923 CRSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------ 988 (1103)
Q Consensus 923 ~~~~~~~-----~~~~~~~~~v~~l~fs~d-g~~l~~~-~d~~v~iwd~~~~~~~~~~~-~~h~~~v~~l~fs~------ 988 (1103)
....... .+.. ..+..++|+|+ |.++++. .++.|++||..+|+.+..+. ..+...+..++|+|
T Consensus 180 ~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp EECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred EeccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 1111100 0111 24789999999 5555554 67899999999899887753 34567889999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEE
Q 001310 989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1068 (1103)
Q Consensus 989 dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~v 1068 (1103)
+|+.+++...+.+|++||+.+++.+..+.... ++. -.+..++++|+ |+++++...++.|++
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----------------~~~--~~p~~ia~~~d-G~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----------------KHF--DMPHDIVASED-GTVYIGDAHTNTVWK 317 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSS----------------SCC--SSEEEEEECTT-SEEEEEESSSCCEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC----------------Ccc--CCeeEEEECCC-CCEEEEECCCCEEEE
Confidence 33333333344589999999999887765210 111 22457888998 789999999999999
Q ss_pred EccC
Q 001310 1069 IEPN 1072 (1103)
Q Consensus 1069 w~~~ 1072 (1103)
|++.
T Consensus 318 ~~~~ 321 (329)
T 3fvz_A 318 FTLT 321 (329)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 9984
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=8.6e-10 Score=136.78 Aligned_cols=586 Identities=9% Similarity=0.032 Sum_probs=339.4
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
..|+++.-.++|..+ .|+.+| +..||- ..... +.... ... -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~----~~~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNE----DDP--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCT----TCT--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCC----CCC--CcccccceeEEEECCCCCEEE-E
Confidence 479999999999744 444555 566663 22211 11000 000 000246799999999987665 4
Q ss_pred eCCCeEEEEEecCCCccccceEeccccc----cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC-CCc-e
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 488 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~----~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~-v 488 (1103)
+.+| +..||..+++. . .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 4555 89999876542 1 2222111 288898888887 344 443 45899997776543211111 112 7
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
.++.... ++. +..++.++.+..|+..+.+..... ......|.++...++|.+.+..... -+..||..+++.
T Consensus 176 ~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYRQ--GDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEI 247 (795)
T ss_dssp EEEEEEE--TTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEE
T ss_pred EEEEECC--CCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeE
Confidence 7776643 444 445666656888887765543321 1234568888888888766654221 189999887765
Q ss_pred EEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEE
Q 001310 568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 568 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~ 638 (1103)
....... ......|.++...++|.. ..|+.+ -|.+||..++.......... ....|.++...++|.+ .
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-W 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-W 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-E
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-E
Confidence 4332211 112357999999888764 445555 58899988776544322110 1235778888888864 4
Q ss_pred EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 718 (1103)
+|+.++-|..|+..+.... .+.. . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 5666666777765433211 0000 0 00
Q ss_pred CCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC
Q 001310 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1103)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1103)
+.......|.++...++|. +-.++.++-+..|+...... ..+....+. .. ..
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~--- 402 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RG--- 402 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------C---
T ss_pred ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cC---
Confidence 0001235688888888887 55566665666666433211 111100000 00 00
Q ss_pred CCCCCCeeEEEEecCCC-EEEEEcCCeEEEEEcCCceeeEEec----CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001310 799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1103)
Q Consensus 799 ~~~~~~v~~l~~s~d~~-~l~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1103)
-....|.+++..++|+ +.+...++.+.++|..+++...-.. .+...|.++...+ ++++.+ |+.+ -+.+||.
T Consensus 403 -l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 403 -IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp -CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred -CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 0346789999999999 6655556789999998776443322 1345789999988 676555 4444 5889998
Q ss_pred CCceeEEEecc------CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 874 RSSEVISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 874 ~~~~~~~~l~~------h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
.+++....... ....|.++...++|++.+... . -|..||..+++. .........+. ....|.++...++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~~~~~~~~~~l--~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-QKASILPVSNV--TKLFTNCIYEASN 553 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-EECCCSCSCGG--GGSCEEEEEECTT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-EEecCCCCCCC--CCCeeEEEEECCC
Confidence 87754332211 236799999999998776544 4 488999887654 11000011111 1236889999999
Q ss_pred CCEEEEEeCCeEEEEECCCceEEEEeeCC---CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCC
Q 001310 948 QTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024 (1103)
Q Consensus 948 g~~l~~~~d~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~ 1024 (1103)
|++.+.+.. .+..||..+++...- ... ....|.++...++|.+.+++ . +-|..||..+++.. .+....-++
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~~~~~-~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~- 627 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQIKRY-NTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQ- 627 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEEEEE-CGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCS-
T ss_pred CCEEEEeCC-CceeECCCCCcEEEe-CCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCc-
Confidence 997776654 789999887765431 111 14568889988888876644 3 45888998877643 333111111
Q ss_pred CCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
...+..-++...++ |. |..|+.+| +..+++.
T Consensus 628 --------------~~~f~~~~~~~~~~-G~-l~~g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 628 --------------SNQFNTASYCRTSV-GQ-MYFGGING-ITTFRPE 658 (795)
T ss_dssp --------------CSCEEEEEEEECTT-SC-EEEEETTE-EEEECGG
T ss_pred --------------cccCccCceeECCC-Ce-EEEecCCc-eEEEcHH
Confidence 11122234555655 44 55567777 5566653
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=1.7e-10 Score=143.00 Aligned_cols=535 Identities=8% Similarity=0.038 Sum_probs=321.9
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
..|.++...++|.. .+ |+. +.+..||..+++...- ... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~l-Wi-gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGRV-WI-GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSCE-EE-EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCCE-EE-EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence 47999999999983 33 334 4589999877653221 000 00000118888888888766654
Q ss_pred eCCCeEEEEEecCCCccccceEeccc-ccc-EEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEE
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~ 491 (1103)
.. .|..||..+++..... .++ ... |.++...+++. +..+..++.|..||..+++..... ..+...|.++
T Consensus 149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 44 4889998765422110 111 123 88898888886 444555556999998777654321 1234567777
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC-------CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1103)
.... ++. +..++.++-+..||..+.+....... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQS--PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT 291 (795)
T ss_dssp EEEE--TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred EEcC--CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence 6643 444 55555554588888776544332221 235699999999988766542 1 289999887
Q ss_pred CeeEEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC--C--CCCCCceEEEecCCCE
Q 001310 565 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 636 (1103)
Q Consensus 565 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~g~~ 636 (1103)
++........ ......|.++...++|. +..|+.++-|..|+..++......... . ....|.++...++|++
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 7654332211 11236799999988876 566777788999987665433221111 0 1234778888887764
Q ss_pred EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 716 (1103)
.+|+.++-|..|+..++........ +.+.
T Consensus 371 -WiGt~~~Gl~~~~~~~~~~~~~~~~---------------------------------~~~~----------------- 399 (795)
T 4a2l_A 371 -WIGTNDGGLNLYNPITQRFTSYTLQ---------------------------------EDES----------------- 399 (795)
T ss_dssp -EEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred -EEEECCCCeEEEcCCCCcEEEEecC---------------------------------CCCc-----------------
Confidence 4577776788888765532211000 0000
Q ss_pred ccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccC
Q 001310 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1103)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1103)
. .......|.++...++|..|.+++.++-+..|+...... ..+.....
T Consensus 400 -------~-----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~-------- 447 (795)
T 4a2l_A 400 -------A-----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS-------- 447 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred -------c-----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence 0 000235678888888888556666655677776443211 11110000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecC------CCCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 001310 797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1103)
Q Consensus 797 ~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1103)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-+..
T Consensus 448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 01356789999999998877766 5688999887655332211 235789999988 676555 444 45888
Q ss_pred EEcCCceeEEEec-------cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310 871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 871 wd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
||..+++. .+. .....|.++...++|.+.+... .| |..||..+++... .....+.. ...|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence 99887765 322 1345799999999998766543 44 8899988765332 22222221 13588899
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCceEEEEeeC--CC-CcCe--EEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--IS-SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 944 fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~--~h-~~~v--~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
..++|++.+++ ++.|..|+..+++... +.. +- ...+ .++...+||++++ |+.+| +..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence 99999877766 5668889988776532 211 11 1222 4667778887666 56677 5556654
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=7.8e-15 Score=179.00 Aligned_cols=268 Identities=10% Similarity=-0.002 Sum_probs=185.4
Q ss_pred ccCCCccEEEEEECCCCCEEEEE--eCCCeEEEEEecCCCccccceEeccccccEE---------EEEEe--cCCCceEE
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 458 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~d~~~~~l 458 (1103)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66789999999999887777777 557889999975443332 4556666665 66666 999941 4
Q ss_pred EEEc-CCCceEEEeCC--CCceeEEeec-----CCCceEEEEeeecCCccEEEEEECC----------CeEEEEEcCCC-
Q 001310 459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 519 (1103)
Q Consensus 459 ~s~~-~d~~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~- 519 (1103)
+..+ .+..|.+|++. ++.....+.. |...+.+++|+ +||+.|++++.+ ..|.+||+.+.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35667777765 2044555655 56678888885 577899988877 57999999872
Q ss_pred ----CeeEEec-CCCccEEEEEEccCCCEEEEEecCCC----CceeEEEEeCC-CC---eeEEEEecccccCCceEEEEE
Q 001310 520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 586 (1103)
Q Consensus 520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 586 (1103)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..++|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2334444 45567788999999999998875432 13579999999 57 4444444434 67899999
Q ss_pred cCCCCEEEEEeCCC--cEEEEECCCCeeEEEEcCCCCC------CCCceEEEecCCCEEEEEECCCeEEEE--EcCCCCe
Q 001310 587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKIL--ETPESNS 656 (1103)
Q Consensus 587 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~g~~l~~~~~dg~i~iw--~~~~~~~ 656 (1103)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.++|| +..+++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~- 327 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE- 327 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence 99999777777777 6777777677655443332211 11567999999999999998 999999 544443
Q ss_pred eEeccccccceeee
Q 001310 657 VDAAGVLSDNLRKL 670 (1103)
Q Consensus 657 ~~~~~~~~~~i~~~ 670 (1103)
+..+..+...+..+
T Consensus 328 ~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 328 LVDAAGPWTEWAAT 341 (662)
T ss_dssp EEECCSSCCEEEEE
T ss_pred EEEecCCCCeEEEE
Confidence 55666555555444
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.5e-13 Score=147.93 Aligned_cols=248 Identities=14% Similarity=0.157 Sum_probs=178.3
Q ss_pred ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE-CCCCC
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-spdg~ 409 (1103)
.+|-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+..+++ .++++
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999998 78888888999999987 554432110 0001235567899999 57787
Q ss_pred EEEEEeC-CCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee--cCC
Q 001310 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1103)
Q Consensus 410 ~las~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~ 485 (1103)
++++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. .++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7777643 78999999 4554333 232 3445789999999998 7788788899999994 566666664 345
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC--CccEEEEEEccCCCEEEEEecCCCCce-eEEEEeC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~ 562 (1103)
..+..+++++ ++.++++...++.|++||... +....+... ...+..++++++|+++++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 5688888854 667778778899999999743 444445433 256889999999988877643 33 7999995
Q ss_pred CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1103)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 610 (1103)
+++.+..+..+. ....+..++++|+++.+++ +.++.|++|++...
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566777776543 1234789999999976655 67999999998653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1e-13 Score=153.09 Aligned_cols=274 Identities=10% Similarity=0.024 Sum_probs=188.6
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
..|.+++|+|++. .++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 4688999999997 466667788999993 333222 44566778999999999988888
Q ss_pred eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC----CceEEEeCCCCceeEEee--cCCCce
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v 488 (1103)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224567899999999998 66666655 689999988877654443 244568
Q ss_pred EEEEeeecCCccEEEEEEC------CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1103)
.++++.+ ++.++++... .+.|..++.++.+... +......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 6666666553 2456556555433332 2222235788999999997766542 2456999998
Q ss_pred CC-CeeEEEEe-----cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC----CCCCceEEEec
Q 001310 563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1103)
Q Consensus 563 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1103)
.+ +.....+. ... ....+..++++++++.+++...++.|.+||. +++.+..+..+.. ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 64 33332211 111 0136788999999988777778899999998 5666666654421 11478999999
Q ss_pred CCCEEEEEECCC
Q 001310 633 NGTLLAVIANEN 644 (1103)
Q Consensus 633 ~g~~l~~~~~dg 644 (1103)
|++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 988777666653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=1.9e-13 Score=167.43 Aligned_cols=250 Identities=10% Similarity=-0.002 Sum_probs=175.7
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCC-----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1103)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875431 12 222367899999999 5776666655
Q ss_pred --------------eEEEeCCCCcee--EEee--cCCCceEEEEeeecCCccEEEEEEC-----CCeEEEEEcCC-----
Q 001310 467 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1103)
Q Consensus 467 --------------i~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~----- 518 (1103)
|++|++.+++.. ..+. .|...+..+.| ++||++|+..+. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 2223 24555677777 557788887765 56899999986
Q ss_pred -CC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEE
Q 001310 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1103)
Q Consensus 519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1103)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++.. .+.+..+. ....+..++|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444443 58899999888775443467899999988742 34444443 113678889987777777
Q ss_pred EEeCCCc--EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1103)
Q Consensus 595 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~ 655 (1103)
+...++. |++|++.+++.+..+..+ ...+..++++|+++.++.... .+++..||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888874 666787778877777765 334678889999887664432 4789999998775
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=2.6e-13 Score=146.78 Aligned_cols=249 Identities=12% Similarity=0.049 Sum_probs=176.2
Q ss_pred ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1103)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 404 (1103)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3445566666688999999999877889999999999999877 322 3346678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEE----Ec-------------CCCc
Q 001310 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CG-------------DDKT 466 (1103)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s----~~-------------~d~~ 466 (1103)
+|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++ |+ ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 999998888777789999999887633211111111 23467899999998 6776 32 1234
Q ss_pred eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-CCCe---eEEecCCCccEEEEEEccCCC
Q 001310 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 542 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1103)
|..++.. ++ +..+..+......++|+ +++..+++.+.++.|.+|+++ ++.. ...+......+..++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 5555544 44 44555666777888885 466777777888999999987 3333 223333344567899999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCee
Q 001310 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1103)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (1103)
+.++. .+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 77665 2349999986 77777777766 4 888999 5888889888875 455566665543
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=4.2e-13 Score=149.08 Aligned_cols=285 Identities=11% Similarity=0.041 Sum_probs=174.7
Q ss_pred ceEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC---Ce--
Q 001310 580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR-- 645 (1103)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---g~-- 645 (1103)
.+...++ ||++++... .++.|++||+.+++.... ..+..++|+|||++|+..+.+ +.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4566667 788777642 256799999998875433 236789999999999987754 23
Q ss_pred EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1103)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1103)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666666543221110
Q ss_pred eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1103)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 805 (1103)
... +..++|+|||+.|+.++.+.. .. .....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------------------~~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------------------EDFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------------------CCcEEE
Confidence 112 677889999988887765410 00 000011
Q ss_pred eEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcee
Q 001310 806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 878 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~ 878 (1103)
..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344332222235689999998877455544 3 788999999 78 777776542 334444435554
Q ss_pred EEEeccCCCCEEEEEEccCCCEEEEEeCC--------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceE-EEEcCCCC
Q 001310 879 ISKLEGHSKRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 949 (1103)
Q Consensus 879 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~fs~dg~ 949 (1103)
..+..+ ..+..+ ||||++|+.++.+ ..|.+|| +++. .....++. ..+.. +.|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence 344444 555554 9999999888754 3677887 4442 12222222 24665 8999 88
Q ss_pred EEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcE-EEEeCCCce
Q 001310 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1103)
Q Consensus 950 ~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v-~vWd~~~~~ 1011 (1103)
++++ ..++.+++| +.+++.... . .+...|.+++|++ .++++++.++.. .+|.+. ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~~~-~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIKPI-A-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEEEE-E-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceEEE-e-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 478899999 876665332 3 3477899999999 677777777665 788776 54
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=1.6e-13 Score=168.00 Aligned_cols=250 Identities=10% Similarity=-0.008 Sum_probs=172.9
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+|+..+..++|||||++++.+.+.+| +|++||+.+|+.+.. . + +...+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 45557889999999996444433333 899999999986642 1 1 1123667999999
Q ss_pred CCEEEEEeCCCe----------------EEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcC-----CC
Q 001310 408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 465 (1103)
Q Consensus 408 g~~las~~~d~~----------------i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-----d~ 465 (1103)
|+.|+.++.++. |++|++.++...... .....|...+..+.|+|||+. |+..+. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 999999887532111 112235566889999999995 444332 56
Q ss_pred ceEEEeCCC------Cc-eeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCe--eEEecCCC--c
Q 001310 466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L 530 (1103)
Q Consensus 466 ~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~--~ 530 (1103)
.|++||+.+ +. ....+..+...+... +++ +|..|+..+.. +.|.+||+.+... ...+..+. .
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 466676676666553 443 45556555543 3699999987642 23333333 3
Q ss_pred cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEE
Q 001310 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD 606 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd 606 (1103)
.+..++|++++.++++... ++...|++|++.+|+.++.+..+. ..+..+.++|+++.++... ..++|+.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6788999877776766654 335678999987888777777655 7788999999988776532 457899999
Q ss_pred CCCCe
Q 001310 607 MNKVQ 611 (1103)
Q Consensus 607 ~~~~~ 611 (1103)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98877
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=3.4e-13 Score=147.70 Aligned_cols=278 Identities=10% Similarity=-0.019 Sum_probs=191.2
Q ss_pred CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccc
Q 001310 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1103)
Q Consensus 355 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 434 (1103)
.+++|.+||.++++....... ... -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~----------~~n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFY----------RAN---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHH----------HHH---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhHh----------hhc---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 378999999999886543100 000 01122456778774 45555666667899999999987655
Q ss_pred eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC-----CceEEEEeeecCCccEEEEEE-CC
Q 001310 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1103)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 508 (1103)
.+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 345688999999985 56666578999999999999887776433 14456666 2 444444444 48
Q ss_pred CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeeEEEEecccccCCceE
Q 001310 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1103)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1103)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999988776666543 344678999999977665432100 2679999999999887775432 23688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEE----ECCCeEEEEEcCCCCee
Q 001310 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 657 (1103)
Q Consensus 583 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~----~~dg~i~iw~~~~~~~~ 657 (1103)
.++|+|++++++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999999887642111111123467899999 55555555 567899999998 7777
Q ss_pred Eecc
Q 001310 658 DAAG 661 (1103)
Q Consensus 658 ~~~~ 661 (1103)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 188
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=9.9e-09 Score=126.92 Aligned_cols=592 Identities=13% Similarity=0.099 Sum_probs=336.6
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
..|.+|.-.++|..++ |+.+| +..||-.+ ... +....... .. ..-....|.++...++|..|-.|
T Consensus 19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence 4789999999997444 44555 66677332 211 11000000 00 00123569999999888845567
Q ss_pred eCCCeEEEEEecCCCccccceE-ecc---ccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCCceeEEeec-----
Q 001310 415 YSKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG----- 483 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~-l~~---h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 483 (1103)
+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.|..+|..+++... +..
T Consensus 84 t~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~ 159 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVPA 159 (781)
T ss_dssp ESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCTT
T ss_pred eCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCcccC
Confidence 6774599999887542110000 000 123688888877 665 4445545568899987765433 321
Q ss_pred -CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-------CCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310 484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1103)
Q Consensus 484 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1103)
....|.++... .++ .|..++.++-+..||..+.+...... .....|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 13457776653 244 45556666568888877654332211 1234688999988888776542 1
Q ss_pred eEEEEeCCCCeeEEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-------CC-----
Q 001310 556 FLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG----- 619 (1103)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 619 (1103)
-+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 2899998877654322111 11235799998887764 6667765678899987765432211 00
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1103)
Q Consensus 620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1103)
-....|.++...++|. |-+|+.++-|..++........ +.. . +..
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~----------------------~~~- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------S----------------------PTQ- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------------------C-
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------C----------------------ccc-
Confidence 0123467788888776 4456655667777765432111 000 0 000
Q ss_pred cceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccC
Q 001310 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779 (1103)
Q Consensus 700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 779 (1103)
..+.......|.++...++|. +..++.++-+..|+......
T Consensus 355 ---------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~----------- 395 (781)
T 3v9f_A 355 ---------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA----------- 395 (781)
T ss_dssp ---------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE-----------
T ss_pred ---------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE-----------
Confidence 000001234578888888877 44555555566666432110
Q ss_pred CeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEec--CCCCCeeEEEEcCCCCC
Q 001310 780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNN 857 (1103)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~ 857 (1103)
..+... .......|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ +++
T Consensus 396 -~~~~~~-----------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~ 462 (781)
T 3v9f_A 396 -IYNKEN-----------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK 462 (781)
T ss_dssp -ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE
T ss_pred -EEccCC-----------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC
Confidence 000000 0014567899999999988886656778899987765433221 2346789999887 665
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccC-----CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCc
Q 001310 858 VIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1103)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1103)
+ ..|+. +-|..||..+++........ ...|.++...++|.+.+.....| |..+|..+++... +....+.
T Consensus 463 l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l 536 (781)
T 3v9f_A 463 I-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF 536 (781)
T ss_dssp E-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTTC
T ss_pred E-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC
Confidence 4 44555 55889998876543322212 46799999999988766443345 7888887755332 2212221
Q ss_pred ccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCC---CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 933 MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 933 ~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
....|.++...++|.+.+.+.+|-+..||..+++... +... ....|.++...++|.+.++ +.+| |..|+..+
T Consensus 537 --~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~ 611 (781)
T 3v9f_A 537 --CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSK 611 (781)
T ss_dssp --SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTT
T ss_pred --CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCC
Confidence 1246899999999998777665544889987765332 1111 1346788888888876654 4555 78889887
Q ss_pred ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1010 LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
++.. .+....-++ ......-++...++ |. |..|+.+| +..+++.
T Consensus 612 ~~~~-~~~~~dGl~---------------~~~f~~~~~~~~~~-G~-l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 612 KCFY-TYDHSNNIP---------------QGSFISGCVTKDHN-GL-IYFGSING-LCFFNPD 655 (781)
T ss_dssp TEEE-EECGGGTCC---------------SSCEEEEEEEECTT-SC-EEEEETTE-EEEECSC
T ss_pred CceE-EecccCCcc---------------ccccccCceEECCC-CE-EEEECCCc-eEEEChh
Confidence 6543 333111111 11122224455555 44 66677777 5666763
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=1.1e-11 Score=137.40 Aligned_cols=204 Identities=10% Similarity=0.014 Sum_probs=141.3
Q ss_pred eEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEE-ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001310 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1103)
..++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.++|. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4678888988888775 36799999 99988877 65322 24455645567777888999999999 8876633
Q ss_pred ec-----cCCCC-EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCc----ccCCCCceEEEEcCCCCEE
Q 001310 882 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 951 (1103)
Q Consensus 882 l~-----~h~~~-V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~fs~dg~~l 951 (1103)
.. ....+ .....+++++..++..+..+.+.+.|+.++.......+...... .-.......++|+||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 11122 23356777776655556788999999976543222222211110 0001234458899999988
Q ss_pred EEEe-----------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310 952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 952 ~~~~-----------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.++. .+.|.++|+.+++.+..+..+ ....+++|+|||+ .++++. .++.|.+||+.+++.++++.
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~ 358 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeec
Confidence 8742 257999999999998886543 3688999999999 777776 58999999999999998853
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.5e-11 Score=133.11 Aligned_cols=285 Identities=11% Similarity=0.057 Sum_probs=195.4
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
+..+...+.+++++|+|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 445556899999999998 66666667899999988 543221 0 223457899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE-eecCCCce
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v 488 (1103)
++++...++.|..||.. ++ +.. ..+......+.++++.++|. ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999976 32 221 12223455789999999998 6777777889999998 6554432 23345567
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1103)
..+++. +++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46667777767789999998 4444332 3334456889999999997665432 456999998 6664
Q ss_pred EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
.. +.... ....+..++++++++..++...++.|.+||. +++ +..+........+.++++ ++|++.++.. .+.+.
T Consensus 216 ~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 43 32211 1357899999999986666557889999998 454 334433333345788999 8887666654 56677
Q ss_pred EEEcCCC
Q 001310 648 ILETPES 654 (1103)
Q Consensus 648 iw~~~~~ 654 (1103)
.++..++
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776654
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=5.4e-13 Score=146.08 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=184.1
Q ss_pred cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecC
Q 001310 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1103)
Q Consensus 706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1103)
.+++|.++|..+.+....................+.+. +++.+++...++.+.+||...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-------------------- 73 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-------------------- 73 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc--------------------
Confidence 46788888876543222110000011122345667774 344455555568888877543
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE-cCCeEEEEEcCCceeeEEecCCC-----CCeeEEEEcCCCCCEE
Q 001310 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 859 (1103)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 859 (1103)
++.+.... .......++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 74 --~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 74 --FKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --CCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --cEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33222221 33567889999999666665 37999999999999887776433 14566777 3 56666
Q ss_pred EEEe-CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC----------CeEEEEEcCCCceeeeeeeec
Q 001310 860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 928 (1103)
Q Consensus 860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~ 928 (1103)
++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6554 4889999999999988877643 345689999999988877655 789999999877543 2332
Q ss_pred CCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEE-eeCCCCcCeEEEEEccC-CCEEEEE----ecCCcE
Q 001310 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSCD-CRMVFTS----FVDGTL 1002 (1103)
Q Consensus 929 ~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~-~~~~h~~~v~~l~fs~d-g~~l~t~----~~dg~v 1002 (1103)
..+ ..+..++|+||+++|.++.. .|.+||..+++.... +...+......++++|+ +..+++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14789999999999988754 999999998876432 12222467889999995 4555554 467899
Q ss_pred EEEeCCCceeEEeec
Q 001310 1003 SIHEASNLEVQCRIL 1017 (1103)
Q Consensus 1003 ~vWd~~~~~~~~~~~ 1017 (1103)
.+||.. |+++.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88887776
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=3.2e-13 Score=164.89 Aligned_cols=249 Identities=11% Similarity=-0.003 Sum_probs=166.5
Q ss_pred cCCCccEEEEEECCCCCEEEEE-----eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc-
Q 001310 393 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT- 466 (1103)
Q Consensus 393 ~~h~~~V~~~~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~- 466 (1103)
.+|...+..++|||||++||.+ +.+.+|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3567789999999999999954 33468999999998754110 11111 126899999999 6777777766
Q ss_pred ------------eEEEeCCCCc----eeEEeecCCCceEEEEeeecCCccEEEEEECCC----eEEEEEcCCCCeeEEec
Q 001310 467 ------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYD 526 (1103)
Q Consensus 467 ------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 526 (1103)
|++|++.++. .+.....|...+.++.++ +||++|+..+.++ .|.+|+..++.. ..+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence 9999999886 333333455677777774 5777887777665 566665544433 3333
Q ss_pred CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee---EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1103)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 603 (1103)
.+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++|+ ++..+++...|+..+
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 34444455555 6777 655554333467899999987753 33333332 2467888888 666777888899888
Q ss_pred EEECC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310 604 IWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1103)
Q Consensus 604 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~ 655 (1103)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88654 455556555432 234667888999987774433 4789999998775
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=2.6e-12 Score=139.33 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=143.1
Q ss_pred eeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEE
Q 001310 805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 880 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 880 (1103)
...++|+|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44678899999888774 47899999999999999864331 233433 667777888899999999876 55432
Q ss_pred EeccC----CCCEE-EEEEc-cCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC------CCcccCCCCceEEEEcCCC
Q 001310 881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 881 ~l~~h----~~~V~-~l~~s-~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs~dg 948 (1103)
....+ ..++. ..+|. ++|+++. .+.+|.|.+.|+.++.......+... .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 22111 12222 24664 6775554 56689999999987653222222211 11111 235568889999
Q ss_pred CEEEEEe-----------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEe
Q 001310 949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1015 (1103)
Q Consensus 949 ~~l~~~~-----------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~ 1015 (1103)
+.+.+.. .+.|.++|+.+++.+..+..+ ..+.+++|++|++ +|+++. .++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9998852 147999999999999987664 3788999999997 666654 589999999999999988
Q ss_pred ec
Q 001310 1016 IL 1017 (1103)
Q Consensus 1016 ~~ 1017 (1103)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=6.5e-13 Score=146.53 Aligned_cols=261 Identities=10% Similarity=0.048 Sum_probs=183.2
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1103)
..|.+++|++++..++..+.++.++.|. ++.. ..+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW---LEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---EEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---ccee---EEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577789999998888878888899992 2222 24556777789999999998 77788889999999998888
Q ss_pred eeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEec--CCCccEEEEEEccCCCEEEEEecC
Q 001310 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
.......+...+.+++++ +++.++++...+ +.|.+||.++......+. .....+..++++|+|+.+++....
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 765554567789999985 466777777666 689999988776553332 234578999999999887765421
Q ss_pred --CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC-CeeEEEE------cCCC
Q 001310 551 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK-VQLLTTI------DAGG 620 (1103)
Q Consensus 551 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~ 620 (1103)
.+..+.|+.+|..+++...... .. ..+..++|+|+++.++.+ +.++.|++||+.+ +..+..+ ....
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~-~~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQ-NI---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEE-EE---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred cccCCCceEEEEeCCCCEEEEeec-CC---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 1124568888877665543332 22 457889999999866554 5678999999963 3322211 1111
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccccc------ceeeeEEe
Q 001310 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSVN 673 (1103)
Q Consensus 621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~~~~~~ 673 (1103)
. ..+..++++++|+++++...++.|.+|+.. ++.+..+..+.. .+.+++++
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence 1 245789999999988888888999999984 555555443322 45555555
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.4e-11 Score=136.41 Aligned_cols=281 Identities=12% Similarity=0.008 Sum_probs=186.2
Q ss_pred EecCCCceEEEEEc-CCC---cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-
Q 001310 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1103)
Q Consensus 341 ~~spdg~~llasgs-~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~- 415 (1103)
...|++++++++-. ... +|.++|..+++.+.+ +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578875444432 233 889999999987653 1112223 899999999999885
Q ss_pred ---------CCCeEEEEEecCCCccccceEec--cc---cccEEEEEEecCCCceEEEEEc--CCCceEEEeCCCCceeE
Q 001310 416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 416 ---------~d~~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~ 479 (1103)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.+. .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345889999999 455554 257899999 9999887
Q ss_pred E-eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-----CCCcc-EEEEEEccCCCEEEEEecCCC
Q 001310 480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 480 ~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
. +.... . +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~~-~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSPT-C---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCCc-e---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 64322 1 33333322 45677788999999999 665542221 11112 233566777666555443
Q ss_pred CceeEEEEeCCCCe--eEEEEeccc-------ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeE
Q 001310 553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 613 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 613 (1103)
.+.+.+.|+.++. .+..+.... ........+.++|++++++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 3468889987553 222222110 00123445789999998888653 357999999999999
Q ss_pred EEEcCCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeEe
Q 001310 614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1103)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1103)
..+.... ...+++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9987543 368999999999 777776 489999999999988766
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=2e-12 Score=136.81 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=178.7
Q ss_pred EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 001310 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1103)
Q Consensus 349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~las~~~d~~i~iwd~~~ 427 (1103)
++++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998765 22343 4688999999999998 35777999999 6
Q ss_pred CCccccceEeccc-cccEEEEEEecCCCceEEEEEcC-CCceEEEeCCCCceeEEeecC------CCceEEEEeeecCCc
Q 001310 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 499 (1103)
Q Consensus 428 ~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ 499 (1103)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+... ......+++ .+++
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76554 34433 34688999999999 7777776 778888884 78887776521 122333333 5678
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc--
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1103)
.++++...++.|..||.+ ++....+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 88877776643 4456778899999988654 456999999999999988754311
Q ss_pred -CCceEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCeeEEEEcCCCCCCCCceEE
Q 001310 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
-..+..+...++|+.+++.... +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337888889999888876421 23345555 4777777776665555555554
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.5e-12 Score=137.81 Aligned_cols=194 Identities=9% Similarity=-0.021 Sum_probs=154.2
Q ss_pred CCCEEEEEc-CCeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC-CCCE
Q 001310 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRV 889 (1103)
Q Consensus 813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V 889 (1103)
.+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 7999999999999999998766 5789999999 888888 45788999998 89999998875 3578
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecC-CCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC
Q 001310 890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1103)
Q Consensus 890 ~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~ 966 (1103)
.++.+.+||+++++.+. ++.|..+|. +|+......+... .++. .....+++.++|+++++. .++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 777888876 4554333222211 1111 135567889999999986 68899999998
Q ss_pred ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
|+.+.++.. ...+.++.+.++|..+++++.++.|..+|..+|+.+.++.
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 999888554 2456678889999999988888899999999999998876
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=6.3e-11 Score=128.14 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=164.4
Q ss_pred ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
..+.+++++++|...++...++.+..|+.... .....++ .....+..++++++|
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~--~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI------------------------IKEYTLP--NPDSAPYGITEGPNG 110 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSC------------------------EEEEECS--STTCCEEEEEECTTS
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCc------------------------EEEEeCC--CcCCCceeeEECCCC
Confidence 45677888899987777666777877764310 1111111 134568899999999
Q ss_pred CEEEEEc-CCeEEEEEcCCceeeEE-ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-eccCCCCEEE
Q 001310 815 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG 891 (1103)
Q Consensus 815 ~~l~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~ 891 (1103)
+++++.. ++.|..||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 187 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG 187 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence 9888775 688999998 5544332 233456789999999 7888877777889999998 6665432 3344567889
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEE
Q 001310 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL 970 (1103)
Q Consensus 892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~ 970 (1103)
++++++|+++++...++.|.+||. +++... ..... .. ..+.+++++++|++.++. .++.|..||. +++..
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 258 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-PN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE 258 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-CC---CCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence 999999998887777889999999 655332 21111 11 258899999999977765 6789999998 46543
Q ss_pred EEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
......+...+.++++ ++|++.++.+ .+.+..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3223445678899999 8888777654 5678888877654
No 199
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=2e-12 Score=139.80 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=168.3
Q ss_pred ccCCCccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1103)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334566788999999998 7778888899999999886 33 4556777899999999998 67777777899999
Q ss_pred eCCCCceeEEeecC----CCceEEEEeeecCCccEEEEEEC-----------------CCeEEEEEcCCCCeeEEecCCC
Q 001310 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1103)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 529 (1103)
|..+++........ ...+..+++. ++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765443221 1235567774 57777777321 2345555443 3334444455
Q ss_pred ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCee---EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001310 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1103)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 605 (1103)
.....++|+|+|+.+++... ++.|++|++. +++. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 56789999999999944432 5579999986 5554 333422 23566789999999865555 7899999
Q ss_pred ECCCCeeEEEEcCCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCC
Q 001310 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1103)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~g~~l~~~~~dg~i~iw~~~~~ 654 (1103)
|.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 986 777777776533 789999 58999999988864 444555544
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=1.6e-11 Score=133.25 Aligned_cols=302 Identities=12% Similarity=0.112 Sum_probs=194.5
Q ss_pred EEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----------CCCcEE
Q 001310 535 MAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIK 603 (1103)
Q Consensus 535 ~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~ 603 (1103)
....|+++.+++.... ....+.|.++|..+++.+..+.... .+ . ++++||+++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---CC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 3457899999887642 1124689999999999999887644 34 4 99999999998875 367899
Q ss_pred EEECCCCeeEEEEcCCCC-----CCCCceEEEecCCCEEEEEEC--CCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310 604 IWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1103)
Q Consensus 604 iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 676 (1103)
+||..+++.+..+....+ ......++|+|||++++++.. ++.|.++|+.+++.+..+..... ..+.|
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P-- 186 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFP-- 186 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEE--
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeec--
Confidence 999999999988865321 123578999999999998874 68999999999877765532100 00000
Q ss_pred ceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-
Q 001310 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN- 755 (1103)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d- 755 (1103)
. +.-.-++.++||+.++.....
T Consensus 187 --------------------~-------------------------------------g~~~~~~~~~DG~~~~v~~~~~ 209 (386)
T 3sjl_D 187 --------------------T-------------------------------------APDTFFMHCRDGSLAKVAFGTE 209 (386)
T ss_dssp --------------------E-------------------------------------ETTEEEEEETTSCEEEEECCSS
T ss_pred --------------------C-------------------------------------CCceeEEECCCCCEEEEECCCC
Confidence 0 000012344444444333322
Q ss_pred ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe-eEEEEe-cCCCEEEEEcCCeEEEEEcCCc
Q 001310 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV-PCFALS-KNDAYLFSASGGVISLYIVMTF 833 (1103)
Q Consensus 756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s-~d~~~l~~~~dg~i~iwd~~~~ 833 (1103)
+.+.. . .+ ..+++.. .++ ...+|. ++|+++.+..+|.|.+.|..+.
T Consensus 210 g~v~~-~---------------~~-~~~~~~~---------------~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 210 GTPEI-T---------------HT-EVFHPED---------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp SCCEE-E---------------EC-CCCSCTT---------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred CeEEE-e---------------ec-ceecccc---------------ccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 22210 0 00 1111111 111 122554 7887777667899999999755
Q ss_pred e--eeEEec---------C-CCCCeeEEEEcCCCCCEEEEEeC----------CCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310 834 K--TILTIM---------P-PSPTATSLAFNPHDNNVIAIGMD----------DSTILIYNARSSEVISKLEGHSKRVTG 891 (1103)
Q Consensus 834 ~--~~~~~~---------~-~~~~i~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1103)
. .+..+. + .......+++++ +++.+++... .+.|.+.|+.+++.+..+.-- ..+..
T Consensus 258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~ 335 (386)
T 3sjl_D 258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDS 335 (386)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECE
T ss_pred cceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcce
Confidence 3 332221 0 123445688899 6777766542 258999999999998887632 36789
Q ss_pred EEEccCCC-EEEEE-eCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 892 LVFSDALN-ILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 892 l~~s~dg~-~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
|+|++|++ +|+++ ..++.|.++|..+++... .+.... ....|.+++|
T Consensus 336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~--~i~~~~-------~p~~l~~s~d 384 (386)
T 3sjl_D 336 INVSQDEKPLLYALSTGDKTLYIHDAESGEELR--SVNQLG-------HGPQVITTAD 384 (386)
T ss_dssp EEECSSSSCEEEEEETTTTEEEEEETTTCCEEE--EECCCC-------SSCCEEEECC
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE--EecCCC-------CCceeEECCc
Confidence 99999997 66554 558999999999988544 333332 2346777776
No 201
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=9.3e-09 Score=127.17 Aligned_cols=536 Identities=11% Similarity=0.042 Sum_probs=312.4
Q ss_pred cCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CCCEE
Q 001310 335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL 411 (1103)
Q Consensus 335 ~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~l 411 (1103)
..|.++...++|. .+ .|+.++.+..||..+++...- .. .. . .. ..-....|.++.... +|...
T Consensus 66 n~I~~i~~d~~g~~lW--igt~~~Gl~~~d~~~~~f~~~-~~---~~-----~-~~--~~l~~~~i~~i~~d~~~~g~lw 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW--IATQRAGLNAYNYETQSFSVY-QY---NP-----E-DP--QSLITNDVTHITSSVQAGKGLW 131 (781)
T ss_dssp SCEEEEEECSSSSEEE--EEESSSCEEEEETTTTEEEEE-CC---CT-----T-CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred cccceEEEcCCCCEEE--EEeCCCCcceECCCCCeEEee-cc---cc-----C-CC--CCcccCcceEEEecCccCCCEE
Confidence 3689999999887 43 355655799999887653321 00 00 0 00 000124688998887 66544
Q ss_pred EEEeCCCeEEEEEecCCCccccceEec------cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee---
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--- 482 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--- 482 (1103)
.++.++.|..||..+++.. .+. -....|.++...++|. +..+..++-|..||..+++...-..
T Consensus 132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~ 203 (781)
T 3v9f_A 132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ 203 (781)
T ss_dssp -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence 4553444888998765321 121 1124588888888876 4445556568899987765432211
Q ss_pred ----cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-------CCCccEEEEEEccCCCEEEEEecCC
Q 001310 483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 483 ----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
.....|.++.. +.++.+. .++.+ -+.+||..+........ .....|.++...++|...+.....
T Consensus 204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~- 278 (781)
T 3v9f_A 204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN- 278 (781)
T ss_dssp -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSS-
T ss_pred CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC-
Confidence 11345777765 3454444 44555 68888876554332111 224568999998888766544212
Q ss_pred CCceeEEEEeCCCCeeEEEEe-----------cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc---
Q 001310 552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--- 617 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 617 (1103)
-|.++|..++....... ........|.++...++|. |..|+.++-|..++..++.......
T Consensus 279 ----Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 279 ----GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp ----CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred ----CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 28899988765432221 1112246799999888775 6667777788999887654332211
Q ss_pred ----CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCC
Q 001310 618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1103)
Q Consensus 618 ----~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1103)
..-....|.+++..++|.+ .+|+.++-|..|+..++... .+..
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~------------------------------- 400 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI-YNKE------------------------------- 400 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred ccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence 0111234777887777764 45665556788876533110 0000
Q ss_pred CCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccc
Q 001310 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1103)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 773 (1103)
+ .......|.++...++|. |.+++.++-+..++......
T Consensus 401 --~---------------------------------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~----- 439 (781)
T 3v9f_A 401 --N---------------------------------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF----- 439 (781)
T ss_dssp --------------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE-----
T ss_pred --C---------------------------------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE-----
Confidence 0 001235677888777777 44455555566665332211
Q ss_pred cccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCC-----CCCeeE
Q 001310 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS 848 (1103)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~ 848 (1103)
...... ......|.++...++|.+.+... +.+..+|..+++........ ...|.+
T Consensus 440 ------------------~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 440 ------------------QIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp ------------------EECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred ------------------EEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 000000 01456789999999888777665 67899998876554332222 467899
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc----CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeee
Q 001310 849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1103)
Q Consensus 849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~ 924 (1103)
++..+ ++++.+ |+.++-+..||..+++.. .+.. ....|.++...++|.+.+.. .+|.|..||..+++...
T Consensus 500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~-- 573 (781)
T 3v9f_A 500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV-- 573 (781)
T ss_dssp EEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE--
T ss_pred EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE--
Confidence 99988 676554 555444778888766533 3321 24578999999998876654 47755889888765332
Q ss_pred eeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeC--CC---CcCeEEEEEccCCCEEEEEecC
Q 001310 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--IS---SVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~--~h---~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
.....+.. ...|.++...++|++.+++.+| |..++..+++... +.. +- .-...++...+||++++ |+.+
T Consensus 574 -~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~ 647 (781)
T 3v9f_A 574 -FQRKEGLP--NTHIRAISEDKNGNIWASTNTG-ISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSIN 647 (781)
T ss_dssp -ECGGGTCS--CCCCCEEEECSSSCEEEECSSC-EEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETT
T ss_pred -ccccCCCC--CceEEEEEECCCCCEEEEcCCc-eEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCC
Confidence 22222221 1357899999999887776444 8888887665432 111 11 11234677778888666 5667
Q ss_pred CcEEEEeCCC
Q 001310 1000 GTLSIHEASN 1009 (1103)
Q Consensus 1000 g~v~vWd~~~ 1009 (1103)
| +..++...
T Consensus 648 G-l~~f~p~~ 656 (781)
T 3v9f_A 648 G-LCFFNPDI 656 (781)
T ss_dssp E-EEEECSCC
T ss_pred c-eEEEChhh
Confidence 7 55667654
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=3.1e-13 Score=164.99 Aligned_cols=249 Identities=9% Similarity=-0.067 Sum_probs=163.4
Q ss_pred cCCcCceEEEecCCCceEEEE----EcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 332 EGSSSPMSMDFHPVQHTLLLV----GTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llas----gs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
+|...+..++|||||++++++ |+.+.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 566679999999999964443 333468999999999865 21 0 1111 125789999
Q ss_pred CCCEEEEEeCCCe-------------EEEEEecCCCccc-cceEeccccccEEEEEEecCCCceEEEEEcCCC----ceE
Q 001310 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1103)
Q Consensus 407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~----~i~ 468 (1103)
||+.|+.++.+.. |++|++.++.... .......|...+..+.|+|||+. |+..+.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988765 9999998875321 11122345567899999999995 44444444 677
Q ss_pred EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCe---eEEecCC-CccEEEEEEccCC
Q 001310 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1103)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg 541 (1103)
+||..+++ ...+..+...+....+ + ++.+++... .++.|.+||++++.. ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4455555555555554 2 444444444 257899999987653 3333332 4467888888 66
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCee
Q 001310 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1103)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 612 (1103)
..+++... ++...|++++.. ++..+.+..+. ...+..++++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666554 334456666654 55555555442 25677788899988777433 347899999998774
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=2.3e-12 Score=137.22 Aligned_cols=240 Identities=8% Similarity=-0.044 Sum_probs=166.4
Q ss_pred CceEEEecCCCceEEE-EEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 336 ~V~~v~~spdg~~lla-sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 666 556789999999766543211 11233567889999999966665
Q ss_pred eCCCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1103)
. ++.|.+||..++... .+. .....+.+++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 122 2335689999999998 6777777889999986655443322233345677787
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1103)
.+ ++.++++...++.|.+||................+..++++++|..+++... ++.|.+|+............
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 54 6677777777889999998776544333333356889999999976666533 45599999876544332212
Q ss_pred ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
. ...+.+++++++|+.+++...++.|+++++...+
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 2568999999999988888889999999987654
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=7.3e-12 Score=133.29 Aligned_cols=237 Identities=11% Similarity=0.038 Sum_probs=164.8
Q ss_pred CeeEEEEecCCCEEE-EEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001310 804 AVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1103)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||..+... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 678999999999777 433 68899999765543322223335778999999 777666555 88999999876543 33
Q ss_pred ec-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310 882 LE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1103)
Q Consensus 882 l~-~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v 959 (1103)
+. .....+.+++++++|+++++...++.|.+|+..+..... ...... ..+.+++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 33 233578999999999988887788899999765533211 111111 246789999999977665 56899
Q ss_pred EEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccC
Q 001310 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSC 1039 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1103)
.+||...+..... ...+...+.+++++++|..+++...++.|.+||..+..... .. . .+.
T Consensus 174 ~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~------------~~~ 233 (270)
T 1rwi_B 174 VKLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------F------------TGL 233 (270)
T ss_dssp EEECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------C------------CSC
T ss_pred EEEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------c------------CCC
Confidence 9999987765443 22333678899999999777777678899999987654322 11 0 011
Q ss_pred CceeeEEEEECCCCCcEEEEEecCCcEEEEccCCC
Q 001310 1040 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1074 (1103)
Q Consensus 1040 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1074 (1103)
-.+..++++|+ ++++++...++.|+++++.+.
T Consensus 234 --~~p~~i~~~~~-g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 234 --NTPLAVAVDSD-RTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp --SCEEEEEECTT-CCEEEEEGGGTEEEEECCCGG
T ss_pred --CCceeEEECCC-CCEEEEECCCCEEEEEcCCCc
Confidence 12357788888 788899899999999998543
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=1.7e-12 Score=159.57 Aligned_cols=247 Identities=9% Similarity=0.044 Sum_probs=163.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCC-----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1103)
+|...+..++|||||++||.++.+ ..|++||+.+++.+. ...+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----~~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----DELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE----EEEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC----ccCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 355578899999999999988654 469999999987543 1112222367899999 8 4555555443
Q ss_pred ------------eEEEeCCCCce--eEEeec--CCCceEEEEeeecCCccEEEEEECCC-----eEEEEEcCCC--CeeE
Q 001310 467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1103)
Q Consensus 467 ------------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 523 (1103)
|++|++.++.. ...+.. +...+..+.+ ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999987763 223332 3335677777 56888888777554 7999999876 3133
Q ss_pred EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1103)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 601 (1103)
.+..+....... ++|+|+.|+..+........|++||+.++ +....+..+. ..+..+.++ ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343333334444 35999999888765444678999999875 3333443333 457777777 4556777888888
Q ss_pred EEEEECC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1103)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~ 655 (1103)
.++|.+. ++.....+..+. ...+..++++|+++.++.... .++|.+||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 455666665432 234678889999886664322 4789999998775
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=1.4e-11 Score=136.49 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=143.6
Q ss_pred eEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-
Q 001310 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 881 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~- 881 (1103)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||++.+.++.+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4567888888888775 36799999999999988874321 233442446667777888888888866654422
Q ss_pred ---eccCCCCE-EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcc-c---CCCCceEEEEcCCCCEEEE
Q 001310 882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 953 (1103)
Q Consensus 882 ---l~~h~~~V-~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~fs~dg~~l~~ 953 (1103)
+.....++ ..+.|+++++.++..+..+.|.+.|+..+............... . .......++|+||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 21112221 23578999988888888899999999765533222222110000 0 0012334799999998887
Q ss_pred Ee-----------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310 954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 954 ~~-----------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
.. ++.|.++|+.+++.+..+..+ ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 52 247999999999999886543 3588999999999 888887 58999999999999998873
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=2.1e-10 Score=124.08 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=191.4
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|++.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence 3445889999999998 66776678999999987 553321 0 22344678999999999988
Q ss_pred EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE-EeecCCCceEE
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 490 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~ 490 (1103)
++...++.|..||.. ++. . ...+......+.++++.++|+ ++++...++.|..+|.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877768889999987 442 2 112233446789999999998 67777668899999977 65542 23334556788
Q ss_pred EEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1103)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1103)
+++. +++.+.++...++.|..++. +++... ........+..++++++|+..++... .+.|.+||. +++...
T Consensus 151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 8875 46666666666788999988 433332 22234456889999999987666532 446999998 555443
Q ss_pred EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1103)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 649 (1103)
..... ....+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+
T Consensus 223 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 223 YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 22111 1356889999999986666656789999998 45433 333332234578999999998666544 4 66666
Q ss_pred Ec
Q 001310 650 ET 651 (1103)
Q Consensus 650 ~~ 651 (1103)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=1.2e-11 Score=137.01 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=191.1
Q ss_pred CCCceEEEEEcCC----CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe----
Q 001310 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1103)
Q Consensus 344 pdg~~llasgs~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~---- 415 (1103)
|+++++.++...+ +.|.+.|..+++.+.+... + ..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 5666556665544 7999999999998875332 1 233 799999999998876
Q ss_pred ------CCCeEEEEEecCCCccccceEec--c---ccccEEEEEEecCCCceEEEEEc--CCCceEEEeCCCCceeEEee
Q 001310 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1103)
Q Consensus 416 ------~d~~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 482 (1103)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987655332 21 0 0123457899999994 55544 36789999999999998886
Q ss_pred cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE----ecCCCcc-EEEEEEccCCCEEEEEecCCCCceeE
Q 001310 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
.... ....+... ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 22223322 5667778889888888854443321 1111112 123568999988877754 3569
Q ss_pred EEEeCCCCeeE--EEEecc--c-----ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEEcC
Q 001310 558 VEWNESEGAIK--RTYQGL--Q-----LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~--~-----~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 618 (1103)
++.|...+... ..+... . ........++++|+++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0 00011223689999998887642 35799999999999999875
Q ss_pred CCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeEec
Q 001310 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1103)
Q Consensus 619 ~~~~~~v~~v~~s~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1103)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 43 268999999999 888888 5899999999999888775
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=7.9e-12 Score=153.64 Aligned_cols=248 Identities=12% Similarity=0.015 Sum_probs=159.0
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+|...+..++|||||++++.+.+.+| +|++||+.+|+.+.. .+ +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-------------------~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-------------------KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-------------------EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-------------------CCceeccEEEECC
Confidence 34457889999999996544443333 599999999987542 10 1122357899999
Q ss_pred CCEEEEEeCCCe--------------EEEEEecCCCccccceEec--cccccEEEEEEecCCCceEEEEEcC-----CCc
Q 001310 408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT 466 (1103)
Q Consensus 408 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~~~l~s~~~-----d~~ 466 (1103)
+.|+.++.++. |++|++.++..... ..+. .+...+..+.|||||+. |+..+. ...
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-PVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT 295 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE-EEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence 99998876543 88999877652211 1222 33345889999999994 444443 348
Q ss_pred eEEEeCCCC--ceeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCC--CeeEEecCCCccEEEEEEc
Q 001310 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL--GARVDYDAPGLGCTRMAYS 538 (1103)
Q Consensus 467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s 538 (1103)
|++||+.++ ++...+..+...+....+ +++..|+..+.+ +.|.+||+++. .....+..+...+..++++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 999999887 425566555555544432 355677766653 45999998874 2333344444456677776
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCee
Q 001310 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1103)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 612 (1103)
++..+++... ++...|++++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4555555544 335556777764 55555555432 36788899999988666432 457899999998873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.3e-10 Score=126.74 Aligned_cols=246 Identities=8% Similarity=0.064 Sum_probs=165.5
Q ss_pred ccEEEEEEecCCcEEEE-------eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE
Q 001310 735 NKISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 807 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 807 (1103)
....+++|+++|..+++ ...++.|.+|+...... ..+... ...++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------~~~~~~----------~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------TVICKP----------EVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------EEEECC----------EETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------EEEEec----------ccCCCCCCCce
Confidence 34578899999987777 56678888887543321 000000 00013356889
Q ss_pred EEEecC-CCEEEEEcCCeEEEEEcCCceeeEE-ecC----CCCCeeEEEEcCCCCCEEEEEeCC---------------C
Q 001310 808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 866 (1103)
Q Consensus 808 l~~s~d-~~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 866 (1103)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 887777666689999998 665433 221 123588999999 78877776655 5
Q ss_pred eEEEEEcCCceeEEEeccCCCCEEEEEEc----cCCCEEEEE-eCCCeEEEEEcC-CCceeeeeeeecCCCcccCCCCce
Q 001310 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 940 (1103)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s~-s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1103)
.|..|+.. ++... +..+......++|+ |+++.|..+ ..++.|.+|+++ +++......+....++.. ..+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 77777765 55433 33344557889999 999765544 567899999987 454333223333322210 1467
Q ss_pred EEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEE-ecCCcEEEEeCCC
Q 001310 941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASN 1009 (1103)
Q Consensus 941 ~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~dg~v~vWd~~~ 1009 (1103)
.++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+++ ..++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988875 6789999999877766553 3445789999999999955544 4567899999874
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.4e-09 Score=117.46 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=168.9
Q ss_pred ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1103)
Q Consensus 392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1103)
+......+.++++.++|+..++...++.|.+||.. ++... ..+..+...+.++++.++|. ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 33455688999999999988877778899999987 44221 12333446789999999998 667666678899999
Q ss_pred CCCCceeE-EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-EEecCCCccEEEEEEccCCCEEEEEec
Q 001310 472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 472 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
.. ++... .+......+.++++. +++.++++...++.|..++.+ ++.. .........+..+++.++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 77 65432 222244667888875 466777777668899999887 4433 223334557889999999996655432
Q ss_pred CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
.+.|..+|. +++... +.... ....+..++++++++..++....+.|.+|+. +++.... ........+.+++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence 445999998 565543 32211 1256889999999876666666778999998 5554432 2222234568899
Q ss_pred EecCCCEEEEEECCCeEEEEEcC
Q 001310 630 FNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999877666667899999873
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=1.6e-10 Score=126.07 Aligned_cols=250 Identities=13% Similarity=0.098 Sum_probs=164.8
Q ss_pred ccCCcCceEEEecCCCceEEEE-------EcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llas-------gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
...-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence 34444788999999997 6666 56678999999888875421 00 00123456789999
Q ss_pred ECCC-CCEEEEEeCCCeEEEEEecCCCcccc-ceEecc-ccccEEEEEEecCCCceEEEEEcCC---------------C
Q 001310 404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 465 (1103)
Q Consensus 404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d---------------~ 465 (1103)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4469999988 553211 100011 224588999999998 56665544 5
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEee--ecCCccEEE-EEECCCeEEEEEcC-CCCe-----eEEecCCC-ccEEEE
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIF-SISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRM 535 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~-s~~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~ 535 (1103)
.|..||.. ++..... .+......++++ .++++..++ +...++.|.+|+.+ .+.. ...+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67777765 5543332 233445777775 114665554 44568899999986 3321 11223232 567889
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 609 (1103)
+++++|+..++... ++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988877643 4469999998787777666554 678999999999966554 4568899999864
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.35 E-value=4.4e-10 Score=126.36 Aligned_cols=242 Identities=12% Similarity=0.011 Sum_probs=163.3
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
...+.|+|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 788888889999999988765432 111 22233 9999999999988
Q ss_pred eCCC--eEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE----eecCCCc
Q 001310 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1103)
Q Consensus 415 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~ 487 (1103)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788898877643221111112 4456789999995553 44466788999999887764332 2222222
Q ss_pred e-E-EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC---------------CccEEEEEEccCCCEEEEEecC
Q 001310 488 V-Y-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1103)
Q Consensus 488 v-~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~ 550 (1103)
- . .+++++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 2 8888653 3567777778899999987654 2222221 13478899999999665543
Q ss_pred CCCceeEEEEeCCCCeeEEEEeccc------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1103)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 607 (1103)
.++..|+.|+..++.. ..+.++. ..-.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266799999888864 3444331 01245889999999877777778888887765
No 214
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.34 E-value=4.6e-06 Score=98.31 Aligned_cols=521 Identities=9% Similarity=-0.006 Sum_probs=291.3
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1103)
+|+.+ ..+.|+..++.+..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45554 55678999998654211 1112 22346789999997764 455666778999999776544444433334566
Q ss_pred EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1103)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1103)
.+++.+. ++.+.++-...+.|.+.+++.................+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7887543 34566666677889999987665444443444567899999976666665321 14568888876544333
Q ss_pred EEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1103)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 648 (1103)
.... ......+++++++..|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25788999999877777765 567899999876444 233221 22345777765 444444445788888
Q ss_pred EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1103)
Q Consensus 649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 728 (1103)
.|..+++....+.........+.+....... ..+.... ....|..+.+
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~---------~~n~C~~-----------------------~ng~C~~~C~ 280 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS---------GWNECAS-----------------------SNGHCSHLCL 280 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC---------CCCTTTT-----------------------TGGGCSSEEE
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc---------cceEecc-----------------------CCCCcchhhh
Confidence 8877776555544333333333332111000 0000000 0000111110
Q ss_pred cCc-c------------ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeecc
Q 001310 729 PSK-V------------KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 795 (1103)
Q Consensus 729 ~~~-~------------~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1103)
... + ......|. +...+++.+. ...|+-..+.... .. .....
T Consensus 281 ~~~~~~~~C~C~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~~--------------------~~-~~~l~ 335 (628)
T 4a0p_A 281 AVPVGGFVCGCPAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQQ--------------------SP-DIILP 335 (628)
T ss_dssp EETTTEEEEECSTTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTTC--------------------CC-CEECC
T ss_pred cCCCCCeeEEcCCCcEecccCCcCc---cccceeeeec-cceEEEEeccccc--------------------Cc-eEEEE
Confidence 000 0 00001111 1122233322 2223222211100 00 00111
Q ss_pred CCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC------CCCCeeEEEEcCCCCCEEEEEeCCCe
Q 001310 796 TTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDST 867 (1103)
Q Consensus 796 ~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~ 867 (1103)
+ ..-..+..++|.+.+..|..+. .+.|..++.........+.. ....+..+|+....+++..+-+..+.
T Consensus 336 ~---~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~ 412 (628)
T 4a0p_A 336 I---HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV 412 (628)
T ss_dssp C---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred e---hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence 1 1234577899999877777765 47788888764332222322 23467899999834555566667889
Q ss_pred EEEEEcCCceeEEEe-ccCCCCEEEEEEcc-CCCEEEEEeCCC--eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310 868 ILIYNARSSEVISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 868 v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
|.+.++. |+....+ ........+|++.| .|.++.+-.... .|...+++...... .+. ... .....++
T Consensus 413 I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla 483 (628)
T 4a0p_A 413 INVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALA 483 (628)
T ss_dssp EEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEE
T ss_pred EEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEE
Confidence 9999986 5544444 33456789999999 555555543333 56666666533211 111 111 2578999
Q ss_pred EcCCCCEEEEE--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEee
Q 001310 944 FHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus 944 fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
++++++.|..+ ..+.|...+++ |.....+.........++++.. +..+++=.....|...|-.+|+....+
T Consensus 484 ~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 484 LDSRLGKLFWADSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 99998888776 45789999986 4444444433344567777654 455555556677888888877654433
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=6.5e-10 Score=119.69 Aligned_cols=228 Identities=10% Similarity=0.044 Sum_probs=151.0
Q ss_pred cEEEEEEecCCcEEEE-eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 736 KISRLTYNNGGQAIFA-LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 736 ~i~~~~~s~~g~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
-..+..|++++..++. ...++.|..|+.... . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 3457889986555544 445678887775432 1 11111 34578899999999
Q ss_pred CEEEEEcCCeEEEEEcCCceeeEEecC----CCCCeeEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-ceeEE
Q 001310 815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 880 (1103)
Q Consensus 815 ~~l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~ 880 (1103)
+++++ .++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.+|.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 96655 467899999988765433221 123578899999 78876654321 2334555443 333 3
Q ss_pred EeccCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEc--CCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eC
Q 001310 881 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 956 (1103)
Q Consensus 881 ~l~~h~~~V~~l~~s~dg~~l~-s~s~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d 956 (1103)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.....+.+....... ..+..++++++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 3333445578899999998664 5556789999998 456544333333332211 246789999999887775 56
Q ss_pred CeEEEEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEec
Q 001310 957 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 998 (1103)
Q Consensus 957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~ 998 (1103)
+.|..||.++|+.+..+. .+...+++++|. ||++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 789999999999887744 345689999999 89887766654
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=1.8e-10 Score=139.94 Aligned_cols=253 Identities=11% Similarity=0.043 Sum_probs=165.4
Q ss_pred cCCcCceEEEecCCCceEEEEEc----CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGT----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+|...+..++|||||++++.+.+ ...+|++||+++|+.+.. .+ +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~-------------------~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL-------------------KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE-------------------EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc-------------------CCceeccEEEe-C
Confidence 46667889999999996554433 335799999999986542 11 11113567999 9
Q ss_pred CCEEEEEeCCC-------------eEEEEEecCCCcccc-ceEecc-ccccEEEEEEecCCCceEEEEEc--CCCceEEE
Q 001310 408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG--DDKTIKVW 470 (1103)
Q Consensus 408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iw 470 (1103)
|+.|+.++.+. .|++|++.++..-.. ...... |...+..+.|+|||+.+++.+.. .+..|++|
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK 264 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence 99999998774 399999987643211 111223 44567889999999963333222 23589999
Q ss_pred eCCCCc-eeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCe--eEEecCCCccEEEEEEccCCCEE
Q 001310 471 DAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 471 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l 544 (1103)
|+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 998774 456666666665554 3332 33444454443 5799999987654 234444444444 899999998
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeE
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 613 (1103)
+..... ++...|++||+..+. .+.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877643 335679999988554 34443322 2467777888888877765544 88999999887643
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=1.3e-09 Score=122.55 Aligned_cols=253 Identities=10% Similarity=-0.012 Sum_probs=166.0
Q ss_pred CCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcee
Q 001310 802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV 878 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~ 878 (1103)
-.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|++++.++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34677899999999777765 588999999987776555443 2233 99999 788888888766 899999876654
Q ss_pred EEEe----ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCce-EEEEcCCCCEEEE
Q 001310 879 ISKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLL 953 (1103)
Q Consensus 879 ~~~l----~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~fs~dg~~l~~ 953 (1103)
...+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|.+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEE
Confidence 4444 224566788999995555555777899999999886632211111 111111 0113 9999996555554
Q ss_pred E--eCCeEEEEECCCceEEEEeeCCC---------------CcCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCceeEEe
Q 001310 954 V--HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCR 1015 (1103)
Q Consensus 954 ~--~d~~v~iwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~~~~~~~~~ 1015 (1103)
+ .++.|+.|+.+.. +..+. ++ -.....++|+++|+++++-+ .+++|+.|++.++.....
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred EeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 3 5678999997743 22211 22 13478899999999777777 789999999888875433
Q ss_pred eccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
............. . ....--.+..++++|+ +.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~-~------~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGT-P------LEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBS-T------TTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCC-h------hceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2210000000000 0 0001124678899998 888888888888988765
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=1.2e-09 Score=117.74 Aligned_cols=232 Identities=12% Similarity=0.097 Sum_probs=155.4
Q ss_pred cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.+..-..+..|+|++..++++...++.|..||..+++.... .....+.+++++++|+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~ 68 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYV 68 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEE
Confidence 33345568899997666888888899999999988764311 134679999999999965
Q ss_pred EEEeCCCeEEEEEecCCCccccceEecc--ccccEEEEEEecCCCceEEEEEcC---------CCceEEEeCCCCceeEE
Q 001310 412 GVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~ 480 (1103)
++. ++.|.+||..+++... ...... ....+..++++|+|+ ++++... .....+|.+.....+..
T Consensus 69 v~~--~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 143 (297)
T 3g4e_A 69 ATI--GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK 143 (297)
T ss_dssp EEE--TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred EEE--CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence 553 5679999998775321 111111 224588999999998 4444322 12335555443222333
Q ss_pred eecCCCceEEEEeeecCCccEE-EEEECCCeEEEEEcC--CCCee-----EEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310 481 FEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1103)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1103)
+..+......++|++ ++..+ ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 144 ~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--- 218 (297)
T 3g4e_A 144 YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--- 218 (297)
T ss_dssp EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---
T ss_pred EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---
Confidence 333444567788854 55555 556668899999974 33321 122223346788999999987776643
Q ss_pred CceeEEEEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeC
Q 001310 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1103)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 598 (1103)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred -CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4469999999999988887765 679999998 88888777654
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=1.1e-10 Score=127.28 Aligned_cols=174 Identities=9% Similarity=0.065 Sum_probs=136.0
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCce-----------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1103)
..+..+++++...++++++...+.+|++.+.. ..... .+.. |++++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999998888889986544 11222 2445 999999 57789988 88999999
Q ss_pred EcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1103)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 951 (1103)
|+.+.........|...+.++.+.+.. +++++.||.|.+||++++.... + . ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence 998876666667788889988877653 8889999999999999866432 1 1 169999999999 44
Q ss_pred EEEeCCeEEEEECCCceE--EEEee-----C---CCCcCeEEEEEccCCCEEEEEe
Q 001310 952 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 952 ~~~~d~~v~iwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
+...||++++|+.+.++. ...+. . +|...|.++.|.+++.++++=+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 445899999999988775 44431 1 4788999999999999988643
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=1.2e-10 Score=127.09 Aligned_cols=196 Identities=11% Similarity=0.000 Sum_probs=126.2
Q ss_pred eEEEEecCCCEEEEEc---CCeEEE--EEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----
Q 001310 806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 875 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----- 875 (1103)
..++++|||++++++. .+.+.+ +|..+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3567788888777775 245777 88876 344432111 123343455666777888888888886
Q ss_pred ceeEEE----eccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC------CCcccCCCCceEEEEc
Q 001310 876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 945 (1103)
Q Consensus 876 ~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs 945 (1103)
++.... +.-...+. + ++++..++..+. +.|.+.|+.++.......+... .+..+ .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 443311 11122333 3 666776666666 8999999976432211111111 11110 122337899
Q ss_pred CCCCEEEEE-e-C--------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCE-EEEEe-cCCcEEEEeCCCceeE
Q 001310 946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 946 ~dg~~l~~~-~-d--------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~t~~-~dg~v~vWd~~~~~~~ 1013 (1103)
|||+.+.++ . . +.+.++|+.+++.+..+..+ ....+++|++||++ +++.. .+++|.|+|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999998875 3 2 36779999999998876543 36889999999985 55555 4899999999999999
Q ss_pred Eeec
Q 001310 1014 CRIL 1017 (1103)
Q Consensus 1014 ~~~~ 1017 (1103)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8887
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=7.4e-11 Score=130.06 Aligned_cols=273 Identities=11% Similarity=0.023 Sum_probs=174.9
Q ss_pred cCceEEEecCCCceEEEEEcC--CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 412 (1103)
..+..++++|+|+ ++++... ++.++||.+.+++.. .++-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 6666532 343666666555422 121111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEecCCCccccceEec----cccccEEEEEEecCCCceEEEEEc---CCCceEEEeCCCCceeEE
Q 001310 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1103)
Q Consensus 413 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~v~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 480 (1103)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988644322 221 12345689999987553 455555 678999999999988777
Q ss_pred eecCCCceE-EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
+.+|..... ...+. .++..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCccccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765532211 02222 2556667777788876663 235789999999999887642 224655
Q ss_pred EeCC---CCe-----eEE--EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1103)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1103)
++.. .+. ... ...++. .....++++++|+.+++...++.|.+||..+++........ ......+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 111 000 111222 34567889999998888888999999998666654333322 233467899
Q ss_pred EecCCCEEEEEECCCeE
Q 001310 630 FNKNGTLLAVIANENRI 646 (1103)
Q Consensus 630 ~s~~g~~l~~~~~dg~i 646 (1103)
|.++++++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998887777655443
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=6.1e-10 Score=120.49 Aligned_cols=238 Identities=12% Similarity=0.042 Sum_probs=159.8
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
...+..|..+.......+|+|+|+.+++++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 34455566566688899999999978889888999999997 45422 1 222556789999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEE----EcC-------------CC
Q 001310 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1103)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s----~~~-------------d~ 465 (1103)
++++|+++++...++.|.+|+.. ++.........+. ...+.+++++++|+ +.++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977766666789999986 4421111111111 13467899999998 6665 332 24
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC------CeEEEEEcCCCCe---eEEecCCCccEEEEE
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1103)
.|..||..+++..... .......++|+ +++..|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6788887777654433 33456778885 466777766655 7899999875431 111122233445789
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC
Q 001310 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1103)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 600 (1103)
++++|++.++. . + .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe
Confidence 99999955443 2 2 2999998 577777776543 478899999998888888754
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=3.4e-09 Score=127.16 Aligned_cols=193 Identities=14% Similarity=0.136 Sum_probs=135.9
Q ss_pred CCeEEEEEcCCceeeEEecCCCC--------------------------------CeeEEEEcCCCCCEEEEEeCCC---
Q 001310 822 GGVISLYIVMTFKTILTIMPPSP--------------------------------TATSLAFNPHDNNVIAIGMDDS--- 866 (1103)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~~--------------------------------~i~~l~~s~~d~~~lasg~~dg--- 866 (1103)
++.|..+|..+|+.+.++..... ....++++| ++.+++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 46788888888887776643211 113578898 677888887664
Q ss_pred ----------------eEEEEEcCCceeEEEecc--CC-------CCEEEEEEccCC---CEEEEEeCCCeEEEEEcCCC
Q 001310 867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 918 (1103)
Q Consensus 867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~l~s~s~dg~I~iwd~~~~ 918 (1103)
.|..+|..+|+.+..+.. |. ....-+....+| +.++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877654 31 122223444577 68999999999999999999
Q ss_pred ceeeeeeeecC--------CCc------------c--cC-----CCCceEEEEcCCCCEEEEE-eC--------------
Q 001310 919 GIQTCRSLQTP--------DGV------------M--TL-----APSETHIQFHKDQTRFLLV-HE-------------- 956 (1103)
Q Consensus 919 ~~~~~~~~~~~--------~~~------------~--~~-----~~~v~~l~fs~dg~~l~~~-~d-------------- 956 (1103)
+......+... .+. . .. ...-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 87543221100 000 0 00 0001367899999888773 21
Q ss_pred -----------------------------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310 957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus 957 -----------------------------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
+.|..||+.+|+.+.+.. +..++.+..++.++..+++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 679999999999987744 3445566677888889999999999999999
Q ss_pred CCceeEEeec
Q 001310 1008 SNLEVQCRIL 1017 (1103)
Q Consensus 1008 ~~~~~~~~~~ 1017 (1103)
.+|+.+.++.
T Consensus 506 ~tG~~lw~~~ 515 (677)
T 1kb0_A 506 ATGEKLWEAP 515 (677)
T ss_dssp TTCCEEEEEE
T ss_pred CCCceeeeee
Confidence 9999998887
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=4e-10 Score=136.97 Aligned_cols=245 Identities=9% Similarity=0.057 Sum_probs=159.5
Q ss_pred CCCccEEEEEECCCCCEEEEEe-----CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC---
Q 001310 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1103)
Q Consensus 394 ~h~~~V~~~~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--- 465 (1103)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666888999999999999653 225799999999874431 1111 113578999 999 566666553
Q ss_pred ----------ceEEEeCCCCce----eEEeec-CCCceEEEEeeecCCccEEEEEEC----CCeEEEEEcCCCC-eeEEe
Q 001310 466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1103)
Q Consensus 466 ----------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 525 (1103)
.|++|++.++.. +..... |...+.++.+ ++|+++|+.... ++.|.++|++++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 399999987753 222233 4445666776 557777754432 2479999988764 33444
Q ss_pred cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCC---
Q 001310 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 600 (1103)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 600 (1103)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887776665433367899999988754 34455444 3333 7888999888766443
Q ss_pred cEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC----CeEEEEEcCCCC
Q 001310 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1103)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----g~i~iw~~~~~~ 655 (1103)
.|++|++..+ ....+..... ..+..+.++++++.++....+ +++..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 4455543321 234566677888877666554 789999987764
No 225
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.24 E-value=6.9e-06 Score=96.79 Aligned_cols=521 Identities=7% Similarity=-0.024 Sum_probs=273.9
Q ss_pred CCCeEEEEEecCCC-ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce-eEEeecCCCceEEEEe
Q 001310 416 SKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~ 493 (1103)
....|+..++.+.. ... .+.........++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 12223445789999997774 444555567899999776532 2233333356788888
Q ss_pred eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1103)
.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 653 34566666678899999988765544443444556789999987666665321 134577777654333222222
Q ss_pred ccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310 574 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1103)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~ 652 (1103)
. ......+++++++..|+.+. ..+.|...|+............ ......+++..+ .++++-...+.|...|..
T Consensus 169 ~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 169 E---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp S---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred C---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2 25678999999877777654 5678888988764443333211 223467787765 344444456789999988
Q ss_pred CCCeeEeccccccceeeeEEe-cCCceeee-ec-----cCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310 653 ESNSVDAAGVLSDNLRKLSVN-PISTVTGA-GI-----ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1103)
Q Consensus 653 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~-----~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 725 (1103)
+++....+.........+.+. |.....+. .+ .-..+.+. +|......+...+|....
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l~------------- 306 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKLL------------- 306 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCBC-------------
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchheec-------------
Confidence 776655544333333333332 11100000 00 00000000 000000000000000000
Q ss_pred eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1103)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 805 (1103)
.....|. .....+|+. +..+.|+..++..... . .....+ ..-..+
T Consensus 307 --------~d~~~C~--~~~~~~Ll~-~~~~~i~~i~l~~~~~--------------------~-~~~~~~---~~l~~~ 351 (619)
T 3s94_A 307 --------ENGKTCK--DGATELLLL-ARRTDLRRISLDTPDF--------------------T-DIVLQL---EDIRHA 351 (619)
T ss_dssp --------TTSSCBC--SSCSEEEEE-EESSCEEEEESSSTTC--------------------C-CEECCC---SCCSSE
T ss_pred --------ccCcccC--CCCceEEEE-EcccceEEEecCCCcc--------------------c-eeEEec---cccCcc
Confidence 0000000 001122333 3334455444432211 0 000111 123456
Q ss_pred eEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-
Q 001310 806 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL- 882 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l- 882 (1103)
.+++|.+.+..|..+. .+.|..++.........+...-.....+|+.+.++++..+-+..+.|.+.++.... ...+
T Consensus 352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~ 430 (619)
T 3s94_A 352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILI 430 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE
T ss_pred EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEE
Confidence 7899998666666654 57899998875433333333335677899986355566666667899999987543 3333
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCe
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETH 958 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~ 958 (1103)
...-....+|++.|....|..+.. ...|...+++...... .+ .... .....+++++++..|..+ ..+.
T Consensus 431 ~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~ 502 (619)
T 3s94_A 431 SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LV---NTSL---GWPNGLALDYDEGKIYWGDAKTDK 502 (619)
T ss_dssp CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTE
T ss_pred ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EE---eCCC---CCCeeeEEcccCCEEEEEECCCCE
Confidence 334456899999997444444432 3567777776533211 11 1111 257899999988888775 5568
Q ss_pred EEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
|..++++... ...+....-....+++...+ ...++-...+.|..-|..+|.
T Consensus 503 I~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 503 IEVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 9999986432 23322222223345665443 333443455678888887773
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=3e-09 Score=127.98 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=132.7
Q ss_pred CCeEEEEEcCCceeeEEecCCC-------------------------------CCeeEEEEcCCCCCEEEEEeCCCe---
Q 001310 822 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 867 (1103)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~lasg~~dg~--- 867 (1103)
++.|..||..+|+.+.++.... .....++++| ++.+++++..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4677778888888776654210 0113578998 6778888888764
Q ss_pred ----------------EEEEEcCCceeEEEecc--CC-------CCEEEEEEccCCC---EEEEEeCCCeEEEEEcCCCc
Q 001310 868 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 919 (1103)
Q Consensus 868 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~l~s~s~dg~I~iwd~~~~~ 919 (1103)
|..+|..+|+.+..+.. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887764 32 1222222333665 78899999999999999998
Q ss_pred eeeeeeeec------------------------CCCcc--cCC-----CCceEEEEcCCCCEEEEE-e------------
Q 001310 920 IQTCRSLQT------------------------PDGVM--TLA-----PSETHIQFHKDQTRFLLV-H------------ 955 (1103)
Q Consensus 920 ~~~~~~~~~------------------------~~~~~--~~~-----~~v~~l~fs~dg~~l~~~-~------------ 955 (1103)
......+.. ..+.. ... ..-..++|+|+..++.+. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 753221110 00000 000 012347899998888763 1
Q ss_pred ---------------------------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcE
Q 001310 956 ---------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1002 (1103)
Q Consensus 956 ---------------------------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v 1002 (1103)
++.|..||+.+|+.+.+... ..++..-.++..+..+++++.||.|
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcE
Confidence 36799999999999877432 2344445677788899999999999
Q ss_pred EEEeCCCceeEEeec
Q 001310 1003 SIHEASNLEVQCRIL 1017 (1103)
Q Consensus 1003 ~vWd~~~~~~~~~~~ 1017 (1103)
+.||.++|+.+.++.
T Consensus 499 ~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 499 IAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCccceeee
Confidence 999999999998877
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=2.5e-10 Score=124.46 Aligned_cols=272 Identities=10% Similarity=-0.039 Sum_probs=173.9
Q ss_pred eEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe--------
Q 001310 348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 415 (1103)
Q Consensus 348 ~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-------- 415 (1103)
++.++...++ +|.+.|..+++.+.+... +. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v------------------G~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------------------AF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------CT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeC------------------CC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555555 888999999998876332 22 34 699999999999886
Q ss_pred --CCCeEEEEEecCCCccccceEecc-c----cccEEEEEEecCCCceEEEEEc--CCCceEE--EeCCCCceeEEeecC
Q 001310 416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 484 (1103)
Q Consensus 416 --~d~~i~iwd~~~~~~~~~~~~l~~-h----~~~v~~~~~s~d~~~~~l~s~~--~d~~i~i--wd~~~~~~~~~~~~~ 484 (1103)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +|+.+ +..+...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999988766432 210 0 123457899999995 44443 3567888 99877 4444321
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-----CCeeE----EecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1103)
. . ..+.+... ..+++.+.||.+.+.++++ ++... .+.....+. + ++++..++..+. +
T Consensus 166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 1 1 12233322 3456667788888888876 22111 011122233 3 666666655543 3
Q ss_pred eEEEEeCCCCe--eEEEEecc-------cccCCceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeeEEEEc
Q 001310 556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 617 (1103)
.+.+.|..++. .+..+... .........++++|++++++.+.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 48888886532 22222110 000011122679999999887543 2356699999999988887
Q ss_pred CCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeEecccc
Q 001310 618 AGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 663 (1103)
Q Consensus 618 ~~~~~~~v~~v~~s~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1103)
... ....++|+|||+ ++++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 543 368999999998 455666 5899999999999888877643
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=2.7e-10 Score=125.45 Aligned_cols=273 Identities=8% Similarity=-0.004 Sum_probs=175.4
Q ss_pred ccEEEEEEecCCcEEEEeec--CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310 735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 812 (1103)
.....++++++|+.+++... ++.++||.+..... .-|- ... ....++...+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~------------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL------------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE------------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe------------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46789999999998777532 34356666541110 0000 000 00113567889999999
Q ss_pred CCCEEEEEc------CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCCCEEEEEe---CCCeEEEEEcCCce
Q 001310 813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 877 (1103)
Q Consensus 813 d~~~l~~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~ 877 (1103)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998777653 478999999999877766432 235689999984455555554 67899999999988
Q ss_pred eEEEeccCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e
Q 001310 878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H 955 (1103)
Q Consensus 878 ~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~ 955 (1103)
....+.+|..... ...++++|..+.+.+.++.++.|.. .+..++|||||+.|.++ .
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533211 1455667888888888887765531 25689999999988885 3
Q ss_pred C-CeEEEEECC---Cce-----EEEE-eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCC
Q 001310 956 E-THLAIYEAE---ELT-----CLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1103)
Q Consensus 956 d-~~v~iwd~~---~~~-----~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1025 (1103)
. +.++.++.. .+. .... ...++......++++++|.++++...++.|.+||..+|+...... .
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~------ 287 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D------ 287 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C------
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C------
Confidence 3 356555532 110 0000 011233456789999999999988889999999996676432222 0
Q ss_pred CCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310 1026 TSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus 1026 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
....++..+++.|+ +.++++....+.+.+|.
T Consensus 288 -------------~~~~~p~~va~~~~-g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 -------------EKLSWTDSFNFGSD-GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp -------------GGGSCEEEEEECTT-SCEEEEECCGGGSGGGB
T ss_pred -------------CceecCCeeEECCC-CcEEEEeCccccccccc
Confidence 01134567888887 78888877665554443
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=5.8e-09 Score=113.76 Aligned_cols=225 Identities=10% Similarity=0.009 Sum_probs=146.9
Q ss_pred EEEEEEecCCcEEE-EeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310 737 ISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1103)
Q Consensus 737 i~~~~~s~~g~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 815 (1103)
..+.+|+|++..++ +...++.|..|+.... . ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence 45678999855554 4445677877775432 1 11111 234688999999999
Q ss_pred EEEEEcCCeEEEEEcCCceeeEEecC----CCCCeeEEEEcCCCCCEEEEEeC------CCeEEEEEcCCceeEEEeccC
Q 001310 816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 885 (1103)
Q Consensus 816 ~l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h 885 (1103)
++++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 88876 44599999988775433221 123688999999 7877665432 25666666 55543 33334
Q ss_pred CCCEEEEEEccCCCEEEEE-eCCCeEEEEEcC--CC-ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEE
Q 001310 886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s~-s~dg~I~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~ 960 (1103)
......++|+|||+.|..+ +.++.|.+|+++ ++ +......+....... ..+..++++++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4457889999999876554 457899999986 55 432222222221111 246789999999987775 468899
Q ss_pred EEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEecC
Q 001310 961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 999 (1103)
Q Consensus 961 iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~d 999 (1103)
+||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 57766553 3345679999998 898877655543
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=3.8e-08 Score=110.06 Aligned_cols=211 Identities=10% Similarity=0.057 Sum_probs=128.5
Q ss_pred cCCeEEEEEcCCceeeEEecCCCCCe-----eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC----EEE
Q 001310 821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----VTG 891 (1103)
Q Consensus 821 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~----V~~ 891 (1103)
.++.+..+|..+++.+.......... ...... + ..+++++.+|.+..+|..+|+.+......... +..
T Consensus 151 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 151 SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence 35667777777776666554322111 222232 2 36777888999999999999988766532110 000
Q ss_pred ---EEEcc--CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310 892 ---LVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966 (1103)
Q Consensus 892 ---l~~s~--dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~ 966 (1103)
+.-+| .+..+..++.++.+..+|..+|+....... + ....+... ++..++...++.|..+|..+
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----~------~~~~~~~~-~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----G------SVNDFIVD-GNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----C------CEEEEEEE-TTEEEEEETTCCEEEEETTT
T ss_pred ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----C------CCCCceEE-CCEEEEEcCCCeEEEEECCC
Confidence 00111 245677778899999999999885432211 1 22333332 44444445788999999999
Q ss_pred ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee-E
Q 001310 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP-H 1045 (1103)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~ 1045 (1103)
|+.+..........+..... .+..|++++.+|.|.++|..+|+.+.+..... ..+.+ .
T Consensus 297 G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~-------------------~~~~~~~ 355 (376)
T 3q7m_A 297 GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS-------------------SGFQTEP 355 (376)
T ss_dssp CCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT-------------------TCBCSCC
T ss_pred CcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC-------------------CcceeCC
Confidence 99887643222223333333 24678888899999999999999887765211 01111 1
Q ss_pred EEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1046 AIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1046 ~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
.+. +..|+.++.+|.|+.|+.
T Consensus 356 ~~~-----~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 356 VAA-----DGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEE-----TTEEEEEBTTSCEEEEEC
T ss_pred EEE-----CCEEEEEeCCCEEEEEeC
Confidence 111 467888999999999863
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=2.9e-10 Score=124.08 Aligned_cols=190 Identities=8% Similarity=0.045 Sum_probs=135.2
Q ss_pred ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
..+..+++++....+++++.++ +.+|++.......... ... +. ..... .+.. |+.++| |+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~~---~~-----~~~~~-----~lp~-V~~l~f--d~ 97 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---STP---LT-----FKWEK-----EIPD-VIFVCF--HG 97 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SCC---CC-----CSEEE-----ECTT-EEEEEE--ET
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---ccc---cc-----ceEEe-----eCCC-eeEEEE--CC
Confidence 3678899999999999999885 4458865422100000 000 00 00111 1445 999999 99
Q ss_pred CEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEE
Q 001310 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894 (1103)
Q Consensus 815 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 894 (1103)
++|+++.++.|++||+.+.........+...+.++.+.+ . -+++++.||.|.+||+.++.... +...|+|++|
T Consensus 98 ~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 98 DQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp TEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred CEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 999999889999999987766666666777788888776 3 38889999999999999887643 4568999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC---CcccCCCCceEEEEcCCCCEEEE
Q 001310 895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD---GVMTLAPSETHIQFHKDQTRFLL 953 (1103)
Q Consensus 895 s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~fs~dg~~l~~ 953 (1103)
||+| ++.|..||++++|+.+.++......+..+. .+..+...|.++.|.+++.++++
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 778999999999999887742222232111 00112237999999999999998
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=1e-08 Score=111.89 Aligned_cols=225 Identities=13% Similarity=0.022 Sum_probs=149.3
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
-..+.+|+|+++.+++++..++.|..||..+++... +. ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 456789999876688888888999999998875331 10 23579999999999987765
Q ss_pred CCCeEEEEEecCCCccccceEec-c-ccccEEEEEEecCCCceEEEEEcC------CCceEEEeCCCCceeEEeecCCCc
Q 001310 416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~-~-h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1103)
.+ .|.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876321 11111 1 124689999999998 4444332 24455555 45443 33233345
Q ss_pred eEEEEeeecCCccEEE-EEECCCeEEEEEcC--CC-Ce-----eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310 488 VYSLCPHAKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1103)
Q Consensus 488 v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1103)
...++|+ +++..++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6677875 4666554 44567899999986 44 21 1122223446778999999987776543 34599
Q ss_pred EEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCC
Q 001310 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 599 (1103)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 599 (1103)
.||. +++.+..+..+. ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 677777776554 579999998 888877665543
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=9.8e-09 Score=123.22 Aligned_cols=332 Identities=10% Similarity=0.045 Sum_probs=192.3
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCcc-----------EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 36677777888888999888888776554321 112233 4566776654 567999999999998
Q ss_pred EEEecc-cccC-CceEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEEcCCCCC-----------------
Q 001310 569 RTYQGL-QLQH-NSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL----------------- 622 (1103)
Q Consensus 569 ~~~~~~-~~~~-~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 622 (1103)
-.+... .... ..+.. ... .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888764 1000 11111 111 2345666543 799999999999999877643221
Q ss_pred -------------CCCceEEEecCCCEEEEEECCC-------------------eEEEEEcCCCCeeEeccccccceeee
Q 001310 623 -------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKL 670 (1103)
Q Consensus 623 -------------~~v~~v~~s~~g~~l~~~~~dg-------------------~i~iw~~~~~~~~~~~~~~~~~i~~~ 670 (1103)
.....++++|++.++++++.++ .|..+|..+++.+..++....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~----- 304 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG----- 304 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-----
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC-----
Confidence 0113578899988988887764 355555555544433321100
Q ss_pred EEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC---c
Q 001310 671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q 747 (1103)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~ 747 (1103)
..|+... .....-+....+| .
T Consensus 305 ----------------------------------------d~wd~~~----------------~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 305 ----------------------------------------DNWDYTS----------------TQPMILADIKIAGKPRK 328 (677)
T ss_dssp ----------------------------------------CCSCCCC----------------CSCCEEEEEEETTEEEE
T ss_pred ----------------------------------------ccccccc----------------CCCcEEEecccCCcEee
Confidence 0111110 0111112223356 5
Q ss_pred EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceee----------ccCCCCCCCCCeeEEEEecCCCEE
Q 001310 748 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL 817 (1103)
Q Consensus 748 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~d~~~l 817 (1103)
.++.++.+|.+.++|..+.+....-......-..-+| .++..... ...+...-...-..++++|++.++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 6777777888888887665441111100000000111 22221110 000000000111367889988877
Q ss_pred EEEc--------------------------------------------CCeEEEEEcCCceeeEEecCCCCCeeEEEEcC
Q 001310 818 FSAS--------------------------------------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1103)
Q Consensus 818 ~~~~--------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1103)
.+.. .+.|..||+.+++.+.++.. ...+....++.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence 7642 16799999999999888763 33344455666
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeEEEeccCC-CCEEEEEEccCCCEEEE
Q 001310 854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 903 (1103)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s 903 (1103)
++.++++++.||.+++||..+|+.+..+.... ....-+.++.+|+.++.
T Consensus 487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 56688889999999999999999999887433 23344667788875554
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=8e-08 Score=107.43 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=99.3
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCC---------CceEE-EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVYS-LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1103)
.++.++.++.|..+|..+|+.+....... ..+.+ ... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 47778889999999999999987765432 22222 222 33578888999999999999998877665
Q ss_pred CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC--CceEEEEEcCCCCEEEEEeCCCcEEE
Q 001310 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1103)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i 604 (1103)
........... .+ ..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 44322111222 23 45666543 5579999999999887766533000 000111122 457888888999999
Q ss_pred EECCCCeeEEEEcC
Q 001310 605 WDMNKVQLLTTIDA 618 (1103)
Q Consensus 605 wd~~~~~~~~~~~~ 618 (1103)
+|..+|+.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999998877654
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=1.5e-08 Score=109.57 Aligned_cols=225 Identities=11% Similarity=0.045 Sum_probs=150.4
Q ss_pred ccEEEEEEecCCcEE-EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310 735 NKISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1103)
Q Consensus 735 ~~i~~~~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 813 (1103)
......+|+++|+.| ++...++.+..|+... . ..... .....+..++++++
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----------------------~-~~~~~----~~~~~~~gl~~d~d 96 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----------------------T-VDVLL----DATAFTNGNAVDAQ 96 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----------------------C-EEEEE----ESCSCEEEEEECTT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----------------------C-EEEEe----CCCCccceeeECCC
Confidence 456788999999954 4555568888776421 1 11110 13456789999999
Q ss_pred CCEEEEEc-CCeEEEEEcCCceeeEEec---C-CCCCeeEEEEcCCCCCEEEE----EeC-------------CCeEEEE
Q 001310 814 DAYLFSAS-GGVISLYIVMTFKTILTIM---P-PSPTATSLAFNPHDNNVIAI----GMD-------------DSTILIY 871 (1103)
Q Consensus 814 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~---~-~~~~i~~l~~s~~d~~~las----g~~-------------dg~v~iw 871 (1103)
|+++++.. ++.|.+|+.. ++...... + ....+..++++| +|+++++ |.. .+.|+.|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99777665 4789999986 54322211 1 123567899999 8888886 432 3568888
Q ss_pred EcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001310 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1103)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 945 (1103)
|..+++..... .......++|+||++.|..+... +.|.+|++..+.......+..... +.+..++++
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~-----~~pdgi~~d 247 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD-----GLPDGFCVD 247 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS-----SCCCSEEEC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC-----CCCCeEEEC
Confidence 87777654433 34557889999999988777665 789999998755322222222111 235679999
Q ss_pred CCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310 946 KDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus 946 ~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
++|++.++. .+.|.+|+.+ ++.+..+... . .+.+++|++|++.|+.++.++
T Consensus 248 ~~G~lwv~~-~~gv~~~~~~-g~~~~~~~~~-~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDSD-GQLLGHIPTP-G-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp TTSCEEECC-SSEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEEEETTE
T ss_pred CCCCEEEec-CCcEEEECCC-CCEEEEEECC-C-ceeEEEEeCCCCEEEEEcCCe
Confidence 999965555 4569999984 6666654432 2 588999999999888887664
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=1.9e-08 Score=120.94 Aligned_cols=333 Identities=8% Similarity=0.035 Sum_probs=188.6
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCcc----------E-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
..++.++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 46777778888999999998888877543221 0 11222 3556666654 667999999999998
Q ss_pred EEEecc-cccCCceEEEEEcC--CCCEEEEEe------CCCcEEEEECCCCeeEEEEcCCCC------------------
Q 001310 569 RTYQGL-QLQHNSVSVVHFDT--AKDQILAAG------DDHVIKIWDMNKVQLLTTIDAGGG------------------ 621 (1103)
Q Consensus 569 ~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~------------------ 621 (1103)
-.+... .. .....+..+| .+..+++++ .+|.|+.||..+|+.+-.+.....
T Consensus 145 W~~~~~~~~--~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADH--KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCT--TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCC--CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 777653 10 0001111111 133555543 378999999999999877653110
Q ss_pred -----------CCCCceEEEecCCCEEEEEECCCe-------------------EEEEEcCCCCeeEeccccccceeeeE
Q 001310 622 -----------LPENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLS 671 (1103)
Q Consensus 622 -----------~~~v~~v~~s~~g~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~i~~~~ 671 (1103)
......++++|++.++++++.++. |..+|..+++.+...+....
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~------ 296 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG------ 296 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT------
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc------
Confidence 011136789998899999887764 66666666655544332100
Q ss_pred EecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc---E
Q 001310 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---A 748 (1103)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~ 748 (1103)
..|+.. ....+.......+|+ .
T Consensus 297 ---------------------------------------d~wd~~----------------~~~~~~l~d~~~~G~~~~~ 321 (689)
T 1yiq_A 297 ---------------------------------------DAWDYT----------------ATQHMILAELPIDGKPRKV 321 (689)
T ss_dssp ---------------------------------------CCSCCC----------------CCSCEEEEEEEETTEEEEE
T ss_pred ---------------------------------------cccccc----------------CCCCcEEEeeccCCcEEEE
Confidence 011111 001111111122443 5
Q ss_pred EEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceee-------------ccCCCCCCCCCeeEEEEecCCC
Q 001310 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV-------------NDTTDSNSQEAVPCFALSKNDA 815 (1103)
Q Consensus 749 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~l~~s~d~~ 815 (1103)
++.++.+|.++++|..+.+...........-..-.+..++..+.. ...+...-...-..++++|+..
T Consensus 322 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~ 401 (689)
T 1yiq_A 322 LMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG 401 (689)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC
Confidence 677777788888877665432100000000000000011110000 0000000011123478888877
Q ss_pred EEEEEc----------------------------------------------CCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310 816 YLFSAS----------------------------------------------GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1103)
Q Consensus 816 ~l~~~~----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1103)
++.+.. +|.|..||+.+++.+.++..+.. ...-
T Consensus 402 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g 480 (689)
T 1yiq_A 402 LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGG 480 (689)
T ss_dssp EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCC
T ss_pred EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCc
Confidence 776541 26799999999999888764432 3333
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEccCCCEEEE
Q 001310 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1103)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s 903 (1103)
.++. .+.++++|+.||.++.||..+|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 481 ~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 481 TLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 4555 5668999999999999999999999888754332 244677888875443
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=4.6e-08 Score=106.31 Aligned_cols=237 Identities=12% Similarity=0.061 Sum_probs=154.0
Q ss_pred cCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-
Q 001310 744 NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS- 821 (1103)
Q Consensus 744 ~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~- 821 (1103)
.+++++++.+. ++.|.++|+...... +++-.......+.. + ........+.++|+| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~----------p~~~k~ie~~~~~~-~----~g~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE----------PKIIKVIEPEEVKK-V----SGYSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS----------CEEEEEECHHHHHH-H----HCEEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC----------ceeeeeechhhccc-c----cCCCcccceeECCCe-EEEEcCC
Confidence 77888777655 588999997543211 11111000000000 0 011134567888999 555543
Q ss_pred C------CeEEEEEcCCceeeEEecCCCC---CeeEEEEcCCCCCEEEEEe-------------------CCCeEEEEEc
Q 001310 822 G------GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGM-------------------DDSTILIYNA 873 (1103)
Q Consensus 822 d------g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~lasg~-------------------~dg~v~iwd~ 873 (1103)
+ |.|.++|..+++.+.++..... .-..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 3 6799999999999998863322 234588899 888888874 3689999999
Q ss_pred CCceeEEEeccC-C-CCEEEEEE--ccCCCEEEEEe------CCCeEEEEEcCCCceeeeeeeecCCCccc---------
Q 001310 874 RSSEVISKLEGH-S-KRVTGLVF--SDALNILVSSG------GDAQIFVWDVDGWGIQTCRSLQTPDGVMT--------- 934 (1103)
Q Consensus 874 ~~~~~~~~l~~h-~-~~V~~l~~--s~dg~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--------- 934 (1103)
.+++.+.++.-- . .....+.| +|+++++..+. .+++|.+|..+.++......+........
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888877642 1 23455656 99999888776 46689888877665444443322221000
Q ss_pred ---CCCCceEEEEcCCCCEEEEE--eCCeEEEEECC---CceEEEEeeCC-------C------CcCeEEEEEccCCCEE
Q 001310 935 ---LAPSETHIQFHKDQTRFLLV--HETHLAIYEAE---ELTCLKQWFPI-------S------SVPISQATFSCDCRMV 993 (1103)
Q Consensus 935 ---~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~---~~~~~~~~~~~-------h------~~~v~~l~fs~dg~~l 993 (1103)
.......+.+|+||++|.++ ..+.|.+||+. +.+.+..+..+ | .+.-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 01357899999999999997 56789999986 34555554443 1 0135789999999999
Q ss_pred EEEe
Q 001310 994 FTSF 997 (1103)
Q Consensus 994 ~t~~ 997 (1103)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=4.4e-08 Score=106.51 Aligned_cols=237 Identities=14% Similarity=0.106 Sum_probs=151.7
Q ss_pred EEe--cCCCEEEEEc--CCeEEEEEcCCc----eeeEEec-------CCCCCeeEEEEcCCCCCEEEEEeCC------Ce
Q 001310 809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST 867 (1103)
Q Consensus 809 ~~s--~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~d------g~ 867 (1103)
.++ +++++|++.+ +++|.++|+.+. +..+++. .....-..+.++| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8889998887 588999999765 5666662 1112456688899 77 77766555 78
Q ss_pred EEEEEcCCceeEEEeccCC---CCEEEEEEccCCCEEEEEe-------------------CCCeEEEEEcCCCceeeeee
Q 001310 868 ILIYNARSSEVISKLEGHS---KRVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 925 (1103)
Q Consensus 868 v~iwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~ 925 (1103)
|.++|..+++.+.++..-. .--..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 9999999999998887322 2234588899999999875 36889999999875443 3
Q ss_pred eecCCCcccCCCCceEEEE--cCCCCEEEEE-------eCCeEEEEECCCceEEEEe---eCCC----------------
Q 001310 926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPIS---------------- 977 (1103)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~f--s~dg~~l~~~-------~d~~v~iwd~~~~~~~~~~---~~~h---------------- 977 (1103)
+....... ....+.| +|+|+++.++ .+++|.+|..+.|+..... ....
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2455656 9999998874 3457877666554321110 0000
Q ss_pred CcCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC---ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCC
Q 001310 978 SVPISQATFSCDCRMVFTSF-VDGTLSIHEASN---LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLK 1053 (1103)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1053 (1103)
......+.+|+||++|.++. ..+.|.+||+.. .+++..+....-.. .+.+. .|......+..+..+|+
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~-~~~~~------~G~~~~ggPr~~~lSpD- 391 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH-RADHP------AGHKLTGAPQMLEISRD- 391 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT-CBCCT------TSCCCCSCCCCEEECTT-
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec-ccccc------ccccCCCCCCEEEEcCC-
Confidence 23578899999999998876 468999999862 35555554221100 00000 00101123456788998
Q ss_pred CcEEEEEe
Q 001310 1054 PTQFAVGL 1061 (1103)
Q Consensus 1054 ~~~l~~~~ 1061 (1103)
|.+|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 77777777
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=7.6e-09 Score=113.49 Aligned_cols=301 Identities=11% Similarity=0.049 Sum_probs=175.3
Q ss_pred EEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe
Q 001310 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1103)
Q Consensus 446 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1103)
+..+..++. +..++.++.|..|| .+++.+.....+...+.++.. ..++ .+..++.+ +..+|. +++.....
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEE
Confidence 445556676 67777889999999 888887665544444455544 3344 44444444 777775 33333322
Q ss_pred cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001310 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1103)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 605 (1103)
...........+. +..+.+++. ++.|+.+|.. ++......... ..+.++...+++. ++.++.++.|..+
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 2222222223333 445555543 4459999988 77666655433 4455566666665 6677788999999
Q ss_pred ECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccC
Q 001310 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1103)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 685 (1103)
|.. ++......... ..+.++...+++.+++. + +.+..++ .+++.......
T Consensus 163 d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~----------------------- 212 (330)
T 3hxj_A 163 NPD-GTEKWRFKTND--AITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA----------------------- 212 (330)
T ss_dssp CTT-SCEEEEEECSS--CCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred CCC-CCEeEEEecCC--CceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence 998 77776665432 34566677677764443 3 5566666 33322111100
Q ss_pred CceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1103)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~ 765 (1103)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCC
Q 001310 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 845 (1103)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 845 (1103)
....+.+++..++|.+.+...++.+..+|. +++.+..+......
T Consensus 213 -----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~ 256 (330)
T 3hxj_A 213 -----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI 256 (330)
T ss_dssp -----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred -----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence 111233344455555544444555555553 34444444433333
Q ss_pred eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~ 917 (1103)
+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++. .++.+|.+++.....
T Consensus 257 ~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 257 ESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred cccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 44456655 45 5667888888999995 677777666555667778887787655 488899998887665
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=2.6e-08 Score=112.35 Aligned_cols=279 Identities=11% Similarity=0.027 Sum_probs=175.3
Q ss_pred EEEcc-----CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE-c-CCCCEEEEEe----------
Q 001310 535 MAYSA-----NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG---------- 597 (1103)
Q Consensus 535 ~~~s~-----dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~---------- 597 (1103)
...|. ||++++.+.. .+..|.+.|+.+.+..+.+.-.. ......+++ + |+++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 45555 8999998653 36679999999999888664332 245788887 5 9999999985
Q ss_pred --------CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceee
Q 001310 598 --------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1103)
Q Consensus 598 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~ 669 (1103)
.++.+.+.|.++.+...++...+. ...++++|+|+++++.+.+... +..+..... .
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~~--~---- 228 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMTA--A---- 228 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHTC--C----
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhccc--c----
Confidence 345799999999999988876432 4678999999999998876421 000000000 0
Q ss_pred eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1103)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1103)
.-..+.+.+.... ..+.++|+..
T Consensus 229 ------------------------------------~~d~v~V~~~~~~---------------------~~~v~~Gk~~ 251 (595)
T 1fwx_A 229 ------------------------------------EMDHIVVFNIAEI---------------------EKAIAAGDYQ 251 (595)
T ss_dssp ------------------------------------SEEEEEEEEHHHH---------------------HHHHHHTCSE
T ss_pred ------------------------------------ccceEEEeeccce---------------------eEeccCCCee
Confidence 0001111111100 0011223222
Q ss_pred EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc-eeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEE
Q 001310 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVIS 826 (1103)
Q Consensus 750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~ 826 (1103)
.. +.+.+.|....+ +.. ..... -.....++.++|||+++++++ +++|.
T Consensus 252 ~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~~~s~~Vs 302 (595)
T 1fwx_A 252 EL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVAGKLSPTVT 302 (595)
T ss_dssp EE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred EE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEeCCCCCeEE
Confidence 21 235555433210 111 11111 123456899999999999987 58899
Q ss_pred EEEcCCce------------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------ceeEEEecc
Q 001310 827 LYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEVISKLEG 884 (1103)
Q Consensus 827 iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~~~~~~l~~ 884 (1103)
++|+.+.+ ...++. -......++|+| +|...++..-|++|.+||+.+ .+.+.++..
T Consensus 303 Vid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 303 VLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp EEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred EEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 99999763 223332 345678999999 776666777899999999987 456777766
Q ss_pred CCCCE-----EEEEEccCCCEEEEEeC---CCe----------EEEEEcCCCceee
Q 001310 885 HSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT 922 (1103)
Q Consensus 885 h~~~V-----~~l~~s~dg~~l~s~s~---dg~----------I~iwd~~~~~~~~ 922 (1103)
|-.+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 381 ~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 381 HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 64421 12355899999998753 542 2889997766544
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=8.2e-09 Score=113.23 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=173.6
Q ss_pred eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1103)
Q Consensus 338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 417 (1103)
....+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|...+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667776 45677788999999 88876543 111334567778877776444 4333
Q ss_pred CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC
Q 001310 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1103)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1103)
|..+|. +++.+... ...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 55443321 1222222333333 44 47778888999999988 8877776655555555554 32
Q ss_pred CccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc
Q 001310 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1103)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1103)
++ .+..++.++.|..+|.. ++...........+.++.+.+++...+.. +.|+.+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46677888999999988 66666666555566777787888765543 2299999 7777766655433
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
..+.++...+++ .+..++.++.|..+|. +++.+..+..... .+..+.+.+++ .|.+++.++.|..+|. +++.+
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 567777888776 4666777888988884 5666666554322 24456666556 5667788888999985 56555
Q ss_pred Eecc
Q 001310 658 DAAG 661 (1103)
Q Consensus 658 ~~~~ 661 (1103)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.97 E-value=1.9e-08 Score=113.43 Aligned_cols=190 Identities=10% Similarity=0.049 Sum_probs=137.0
Q ss_pred EEEec-----CCCEEEEEc--CCeEEEEEcCCceeeEEecCC-CCCeeEEEE-c-CCCCCEEEEEe--------------
Q 001310 808 FALSK-----NDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM-------------- 863 (1103)
Q Consensus 808 l~~s~-----d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~-------------- 863 (1103)
.++|. ||+++.+.. ++.|.+.|+.+.++...+.-+ ......+++ + | +++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55555 899998876 477999999999988855433 246788888 5 8 788888774
Q ss_pred ----CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC-------------------------------
Q 001310 864 ----DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------------------------------- 908 (1103)
Q Consensus 864 ----~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg------------------------------- 908 (1103)
.++.+.+.|..+.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34689999999999888876322 346688999999999988653
Q ss_pred -------eEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCce---------
Q 001310 909 -------QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--------- 968 (1103)
Q Consensus 909 -------~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~--------- 968 (1103)
.|.|.|..+ ++.. ...+... ....++.|||||++++++ .+.+|.++|+++.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEECcEEEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 255555554 2210 1112221 135679999999999986 67799999999763
Q ss_pred ---EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 969 ---CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 969 ---~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
.+..... ......++|++||...++.-.|+.|.+||+++
T Consensus 320 ~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 320 RSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3333222 46788999999994445566899999999987
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=8e-10 Score=122.65 Aligned_cols=191 Identities=8% Similarity=-0.023 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1103)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67899999999999999999998654 3333 4455555667776 677788999999999999998877654422
Q ss_pred ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1103)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1103)
.......... ++..+++++.|+.++.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1110010001 23477888899999999999988877665443 2345678888888765 6679999999998
Q ss_pred eEEEEecccccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
.+..+.... .....+..+. ..+++++.+|.|+.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 766654322 1122233332 5678889999999999999998877764
No 244
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.92 E-value=0.00034 Score=82.38 Aligned_cols=530 Identities=9% Similarity=-0.013 Sum_probs=276.7
Q ss_pred EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-eCCCeEEEEEecC
Q 001310 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHG 427 (1103)
Q Consensus 349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~ 427 (1103)
|+++ ....|+..++++........ + ..-..+..++|++++..|..+ ..++.|..+++.+
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4444 34678888887654322100 1 123467899999976666655 4568899998876
Q ss_pred CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE-E
Q 001310 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-S 506 (1103)
Q Consensus 428 ~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~ 506 (1103)
..... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.+.++- +
T Consensus 69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g 143 (628)
T 4a0p_A 69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG 143 (628)
T ss_dssp CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence 53211 22222245678999877665 4455566788999997655433333344456788888654 33444443 2
Q ss_pred CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE
Q 001310 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1103)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 586 (1103)
..+.|...+++......... .......++++++++.|+.+-. +...|...|+..... ..+.... .....+++
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~glav 215 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLTQ 215 (628)
T ss_dssp SSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEEE
T ss_pred CCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEEE
Confidence 35678888877655444333 4456789999999888887753 355799999875444 3333322 34567777
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE-EecCCCEEEEEECCCeEEEEEcCCCCeeEecccccc
Q 001310 587 DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD 665 (1103)
Q Consensus 587 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 665 (1103)
.. +..+++-...+.|...|..+++....+..... ....+. +++..+. + . ..+. ....
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~-----------n~C~----~~ng 273 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-W-----------NECA----SSNG 273 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-C-----------CTTT----TTGG
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-c-----------eEec----cCCC
Confidence 54 33334444578899999888776665543211 122332 2221110 0 0 0000 0000
Q ss_pred ceeeeEEecC-CceeeeeccCCceEe-cCCC-CCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310 666 NLRKLSVNPI-STVTGAGIANGSVSV-NEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1103)
Q Consensus 666 ~i~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 742 (1103)
....+++... +... ..+..+.... .+.. .+...+++.+. ...|+-..+..... ....++. .....+.+++|
T Consensus 274 ~C~~~C~~~~~~~~~-C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 274 HCSHLCLAVPVGGFV-CGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY 347 (628)
T ss_dssp GCSSEEEEETTTEEE-EECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred CcchhhhcCCCCCee-EEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence 1111111111 1110 0111111000 0000 01112222222 23344333321111 0111111 12345778999
Q ss_pred ecCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc
Q 001310 743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1103)
Q Consensus 743 s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~ 821 (1103)
.+....|+.+.. .+.|+.++.+.... .. +.............+..+|+...++.|..+.
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td 407 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEEc
Confidence 987766666544 46666655432110 00 0000000001234678999999877766554
Q ss_pred --CCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeEEEe-ccCCCCEEEEEEc
Q 001310 822 --GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKL-EGHSKRVTGLVFS 895 (1103)
Q Consensus 822 --dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s 895 (1103)
.+.|.+.++. |+....+. ..-....++++.|..+.++.+-.... .|...++. |.....+ ...-.....|++.
T Consensus 408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D 485 (628)
T 4a0p_A 408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALD 485 (628)
T ss_dssp TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEe
Confidence 4789999986 44444433 34467899999995555555433332 56666665 4433333 3234467899999
Q ss_pred cCCCEEEEEe-CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEE
Q 001310 896 DALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK 971 (1103)
Q Consensus 896 ~dg~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~ 971 (1103)
++++.|..+. ..+.|...+++..... .+.. +.. ....++++.. + .|..+ ..+.|...|..+|+...
T Consensus 486 ~~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 486 SRLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCE
T ss_pred CCCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcE
Confidence 9876666554 4678999999764321 1211 111 1345666644 3 33332 45567777766665443
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=8.4e-07 Score=106.36 Aligned_cols=193 Identities=13% Similarity=0.142 Sum_probs=132.8
Q ss_pred CCeEEEEEcCCceeeEEecCCC---C----------------------------CeeEEEEcCCCCCEEEEEeCCCe---
Q 001310 822 GGVISLYIVMTFKTILTIMPPS---P----------------------------TATSLAFNPHDNNVIAIGMDDST--- 867 (1103)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~---~----------------------------~i~~l~~s~~d~~~lasg~~dg~--- 867 (1103)
++.|..+|..+|+.+.++.... . ....++++| +..+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 3789999999999988775311 0 112478888 6678888887764
Q ss_pred ----------------EEEEEcCCceeEEEecc--CC-------CCEEEEEEccCCC---EEEEEeCCCeEEEEEcCCCc
Q 001310 868 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 919 (1103)
Q Consensus 868 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~l~s~s~dg~I~iwd~~~~~ 919 (1103)
|..+|..+|+.+..+.. |. .+.....+..+|+ .++.++.+|.++++|..+|+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999999887764 32 2333333344775 68889999999999999998
Q ss_pred eeeeeeeec---------CCCcc--------c------CC-----CCceEEEEcCCCCEEEEE-----------------
Q 001310 920 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 954 (1103)
Q Consensus 920 ~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~fs~dg~~l~~~----------------- 954 (1103)
......+.. ..+.. . .. ..-..++++|+..++.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 763211100 00000 0 00 001237888987776651
Q ss_pred --------------------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310 955 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus 955 --------------------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
.++.|..||..+|+.+.+... ..+.....+...+.++++++.|+.+++||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 127799999999999876443 2334444556678889999999999999999999998
Q ss_pred eec
Q 001310 1015 RIL 1017 (1103)
Q Consensus 1015 ~~~ 1017 (1103)
++.
T Consensus 494 ~~~ 496 (668)
T 1kv9_A 494 QFE 496 (668)
T ss_dssp EEE
T ss_pred Eec
Confidence 887
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=7.6e-06 Score=86.07 Aligned_cols=256 Identities=11% Similarity=0.024 Sum_probs=156.9
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcccc--ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~--~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1103)
|.+|..+.. +.|+.+++.+...... ...+......+..++|++++.. ++++....+.|.++|+..+.....+....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 345555543 4789999876542110 1112222345789999997764 45556667899999987665443333333
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
.....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus 79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~ 156 (267)
T 1npe_A 79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (267)
T ss_dssp CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence 56788888543 334555656678999999876544333333334678999999877766654321 1356888887543
Q ss_pred eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CC
Q 001310 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE 643 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d 643 (1103)
. ...+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. +..++++. ..
T Consensus 157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCC
Confidence 2 23332111 24678999999877776654 5688999999765544443321 123456654 44555554 56
Q ss_pred CeEEEEEcCCCCeeEeccccc-cceeeeEEecC
Q 001310 644 NRIKILETPESNSVDAAGVLS-DNLRKLSVNPI 675 (1103)
Q Consensus 644 g~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~ 675 (1103)
+.|..++..+++.+..+.... .....+++.|+
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 899999999888777665332 23455555543
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=9.2e-10 Score=122.15 Aligned_cols=189 Identities=9% Similarity=0.061 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc
Q 001310 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1103)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1103)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+.++++.+++++.|+.|+.||..+|+..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456889999999999999999999988876 55666666778888888889999999999888754322111100000
Q ss_pred CCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310 935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 935 ~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
.+..++.++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..+++++.|+.|+.||..+|+.+
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 011112344 4444 5789999999999999876432 22 2456778889999999999999999999877
Q ss_pred EeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCC--CCcEEEEEecCCcEEEEccCCCCCCCcc
Q 001310 1014 CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAV 1080 (1103)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~dg~v~vw~~~~~~~~w~~ 1080 (1103)
.++....+.. ...+++ ....+++++.||.|+.||....+..|..
T Consensus 154 W~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 154 WNATYFDYAA-----------------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CEEEEEEECC-----------------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EeEecccccC-----------------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 6654211100 011111 0156777889999999999777777864
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.85 E-value=2.5e-06 Score=99.60 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=107.8
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCceeEEEecc--CC--------CCEEEEEEc-cCC--
Q 001310 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 898 (1103)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg-- 898 (1103)
.+++.+ +..+++.+..+ +.|..+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456667 55577777655 3899999999999877764 21 1121 2222 567
Q ss_pred -CEEEEEeCCCeEEEEEcCCCceeeeeeeec----------CCCccc----------------C-----CCCceEEEEcC
Q 001310 899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT----------------L-----APSETHIQFHK 946 (1103)
Q Consensus 899 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~----------------~-----~~~v~~l~fs~ 946 (1103)
+.++.++.+|.+.+.|..+|+......+.. ..+... . ...-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999998765332211 000000 0 00113567888
Q ss_pred CCCEEEEE----------------------------------------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEE
Q 001310 947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 986 (1103)
Q Consensus 947 dg~~l~~~----------------------------------------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~f 986 (1103)
+..++.+. ..+.|.-||+.+|+.+.+...+ .++.+-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766542 2357899999999988764322 22222223
Q ss_pred ccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 987 s~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
...+..++.++.|+.++.||.++|+++.++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 4456777789999999999999999998876
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.84 E-value=8e-06 Score=85.89 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=143.6
Q ss_pred ccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
..+..++|++++..|..+. ..+.|.+++..++.... .+.........+++++++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776666554 56789999998654211 22222346789999998664 4555566788999997654
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEEC--CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
...............+++++. ++.+.++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 332222222245678888653 2333344333 468888888754433333233346789999999888877653 2
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1103)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence 557999998765443333321 234566654 45555554 56899999999999988886432 22357888888
Q ss_pred CCC
Q 001310 633 NGT 635 (1103)
Q Consensus 633 ~g~ 635 (1103)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=5.2e-06 Score=99.44 Aligned_cols=335 Identities=12% Similarity=0.095 Sum_probs=181.7
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeEEecCCCcc----------E-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
..++.++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 36777778889999999988888776543221 0 11222 3456666653 567999999999998
Q ss_pred EEEeccccc-CCceEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEEcCCCCC------------------
Q 001310 569 RTYQGLQLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL------------------ 622 (1103)
Q Consensus 569 ~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 622 (1103)
-.+...... ...+.+ ... .+..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 777653200 011110 011 1345666543 589999999999999877532110
Q ss_pred -----------CCCceEEEecCCCEEEEEECCCe-------------------EEEEEcCCCCeeEeccccccceeeeEE
Q 001310 623 -----------PENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLSV 672 (1103)
Q Consensus 623 -----------~~v~~v~~s~~g~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~i~~~~~ 672 (1103)
.....++++|+..++++++.++. |..+|..+++.+...+....
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~------- 291 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG------- 291 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-------
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC-------
Confidence 01124788888888888877653 55555555544433321100
Q ss_pred ecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc---EE
Q 001310 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---AI 749 (1103)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l 749 (1103)
..|+.. ...+.....+..+|+ .+
T Consensus 292 --------------------------------------~~wd~~----------------~~~~~~~~d~~~~G~~~~~v 317 (668)
T 1kv9_A 292 --------------------------------------DSWDFT----------------ATQQITLAELNIDGKPRKVL 317 (668)
T ss_dssp --------------------------------------CCSCCC----------------CCSCEEEEEEEETTEEEEEE
T ss_pred --------------------------------------cccccc----------------CCCCcEEEEeccCCcEEEEE
Confidence 011111 001111112223454 46
Q ss_pred EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeecc----------CCCCCCCCCeeEEEEecCCCEEEE
Q 001310 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND----------TTDSNSQEAVPCFALSKNDAYLFS 819 (1103)
Q Consensus 750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~l~~s~d~~~l~~ 819 (1103)
+.++.+|.+.++|..+.+...........-..-.+..++..+.... .+...-...-..++++|+..++.+
T Consensus 318 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv 397 (668)
T 1kv9_A 318 MQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYI 397 (668)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEE
T ss_pred EEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEE
Confidence 6777778888777665543210000000000001111222111000 000000011123677777665543
Q ss_pred E------------------------------------c-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEE
Q 001310 820 A------------------------------------S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862 (1103)
Q Consensus 820 ~------------------------------------~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg 862 (1103)
. . +|.|..||..+++.+.+...+. ......+.. .+.+++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g 475 (668)
T 1kv9_A 398 PYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQG 475 (668)
T ss_dssp EEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEE
T ss_pred eccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEE
Confidence 1 1 2779999999999987765432 222233333 45688889
Q ss_pred eCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCC-EEEEEe
Q 001310 863 MDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 905 (1103)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~l~s~s 905 (1103)
+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 476 ~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 476 TAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 999999999999999998887543211 2244456776 444443
No 251
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.80 E-value=0.0015 Score=82.21 Aligned_cols=574 Identities=10% Similarity=0.027 Sum_probs=281.0
Q ss_pred ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----CCEEE
Q 001310 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLG 412 (1103)
Q Consensus 337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~la 412 (1103)
-+++++-.+| +|+.||..|.=.+|.+.....-....+.+-| --..-++|..++.-.. ...|+
T Consensus 329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~ 394 (1158)
T 3ei3_A 329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLV 394 (1158)
T ss_dssp CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEE
Confidence 3566666666 5788888777777777643210000000000 0113367777766431 23555
Q ss_pred EEe---CCCeEEEEEecCCCccccceEeccccccEEEEEEec---CCCceEEEEEcCCCceEEEeCCCCceeEEee--cC
Q 001310 413 VAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GH 484 (1103)
Q Consensus 413 s~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~ 484 (1103)
+++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+....+.+ .|+.+. ++.+..+. +.
T Consensus 395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf 469 (1158)
T 3ei3_A 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGF 469 (1158)
T ss_dssp EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTC
T ss_pred EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccccc
Confidence 543 457788775433221111112332 24566665432 233 5555555555 455442 22232221 11
Q ss_pred CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
......++...-+++ .++=.. ...|++.+.........+.... ..|...+.+ +.+++.+. + +.+..+++.
T Consensus 470 ~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g----~~l~~fel~ 540 (1158)
T 3ei3_A 470 VDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-G----RALYYLQIH 540 (1158)
T ss_dssp CSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-T----TEEEEEEEE
T ss_pred cCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-C----CEEEEEEee
Confidence 111112221111111 222222 2345666665544554555433 356555544 34555553 1 236667766
Q ss_pred CCeeEEEEecccccCCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe--cCC
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNG 634 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~g 634 (1103)
.++....... . -...|.|+++.+. .++++.|.. |++++|+++.+.+.+........ ....++.+. ...
T Consensus 541 ~~~L~~~~~~-~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 541 PQELRQISHT-E-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESS 617 (1158)
T ss_dssp TTEEEEEEEE-E-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTE
T ss_pred CCceeeeccc-C-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCC
Confidence 6543322111 1 1367999998764 368888886 99999999998777655544321 123344333 234
Q ss_pred CEEEEEECCCeEEEEEcC--CCCeeEec--cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310 635 TLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1103)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~--~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1103)
.+|.+|-.||.+.-+.+. ++...... .-...++.-..+...+. ...|. ..+..+++..+ .+.+
T Consensus 618 ~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~---------~~V~a---~s~rp~liy~~-~~~l 684 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLST---------TNVFA---CSDRPTVIYSS-NHKL 684 (1158)
T ss_dssp EEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSC---------EEEEE---ESSSCEEEEES-SSSE
T ss_pred cEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCc---------eeEEE---ECCCCEEEEEc-CCce
Confidence 578899999988766554 33332221 11111221111111000 00000 00111111111 1111
Q ss_pred ccccccccCCccceeeeccCccccccE-EEEEEecC--CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310 711 EVEKPLFARPSECQSLLLPSKVKANKI-SRLTYNNG--GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1103)
Q Consensus 711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1103)
.+-.+. ...+ ....|+.. ..-++..+ ++.++|..++.... |+
T Consensus 685 ~~s~l~-----------------~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--------------~~--- 729 (1158)
T 3ei3_A 685 VFSNVN-----------------LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--------------LH--- 729 (1158)
T ss_dssp EEEEBS-----------------SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--------------EE---
T ss_pred EEeccC-----------------hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--------------ee---
Confidence 110000 0111 12223221 12244333 34577766543210 10
Q ss_pred CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc----------------------------------------------
Q 001310 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---------------------------------------------- 821 (1103)
Q Consensus 788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---------------------------------------------- 821 (1103)
..... -...+..++++|+.+.++.+.
T Consensus 730 ---~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 801 (1158)
T 3ei3_A 730 ---IRTVP-----LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG 801 (1158)
T ss_dssp ---EEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred ---EEEEe-----CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence 11111 223445555555544333221
Q ss_pred ----CCeEEEEEcCCceeeEEecCCC-CCeeEEE---EcCCCCCEEEEEe----------CCCeEEEEEcCCceeEEEec
Q 001310 822 ----GGVISLYIVMTFKTILTIMPPS-PTATSLA---FNPHDNNVIAIGM----------DDSTILIYNARSSEVISKLE 883 (1103)
Q Consensus 822 ----dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~s~~d~~~lasg~----------~dg~v~iwd~~~~~~~~~l~ 883 (1103)
.+.|++.|..+++.+..+.-.. ..+.+++ |..+...++++|+ ..|.|.+|++..++.....+
T Consensus 802 ~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~ 881 (1158)
T 3ei3_A 802 EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE 881 (1158)
T ss_dssp CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE
T ss_pred CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE
Confidence 1347788888888776655333 3445544 4432357899886 35899999997554322211
Q ss_pred -cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe--CC-eE
Q 001310 884 -GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ET-HL 959 (1103)
Q Consensus 884 -~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~-~v 959 (1103)
...++|++++-- +|++||.. ...|++|++...+.....+ ... . .+..+.....++++++|. ++ .+
T Consensus 882 ~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~~----~---~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 882 KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NHY----N---NIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EEC----C---CSCEEEEEEETTEEEEEESSBCEEE
T ss_pred EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ecc----c---cEEEEEEeccCCEEEEEEhhheEEE
Confidence 246789888643 45555443 4779999998754222111 111 1 233344444677888872 33 34
Q ss_pred EEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
.-|+...++....-...+...++++.|-.++ .++.+..+|.+.+.....
T Consensus 951 ~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 951 LAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 4577666665544344457889999998765 566688999999987764
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=9.3e-07 Score=90.56 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=139.6
Q ss_pred CeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310 804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1103)
....++|++|+.++++.+ ++.|.++|..+++.+.++..... ....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999886666654 47899999999999988763322 33456665 3456666667899999999999999
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCe
Q 001310 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1103)
Q Consensus 880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~ 958 (1103)
.++..-... ...+++||+.|+++..++.|.++|..+.+......+....... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence 888632111 2446678887777777899999999987755533322211111 135678888 77555444 5789
Q ss_pred EEEEECCCceEEEEeeCCC------------CcCeEEEEEccCCCEE-EEEecCCcEEEEeCCCce
Q 001310 959 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus 959 v~iwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~l-~t~~~dg~v~vWd~~~~~ 1011 (1103)
|.+.|.++++.+..+..+. ......++|+|+++.| +|+.....+.+-++.+..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999988764320 1355899999998755 555577888888876543
No 253
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.79 E-value=0.00083 Score=79.03 Aligned_cols=500 Identities=9% Similarity=-0.043 Sum_probs=254.1
Q ss_pred CccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310 396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1103)
-..+..++|++.+..|..+. ..+.|..+++.+..... ..+.........+++.+.+.. +.++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 34678999999777776654 45788889887653111 123333356889999997664 455566778999999765
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEE-ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1103)
......+...-.....+++.+. ++.++++- +..+.|...+++.................+++++++..|+.+-. .
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~ 191 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K 191 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---T
T ss_pred CCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---C
Confidence 4433333344455677888654 33344443 22466777777655444444444556789999998888877743 2
Q ss_pred ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe-
Q 001310 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN- 631 (1103)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s- 631 (1103)
...|...|+..........+.. .....+++..+ .++.+ ...+.|...|..+++....+.... .....+.+.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~ 264 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFS 264 (619)
T ss_dssp TCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECC
T ss_pred CCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEc
Confidence 5568999886544333322222 23346666554 45444 467789999988887665554321 112333332
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC--CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310 632 KNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1103)
Q Consensus 632 ~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1103)
|..+-. +..... ...+ ..+.......... .+..|.+..+... +.... .....+|+.+ ..+.
T Consensus 265 ~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~--~C~C~~g~~l~~d---~~~C~----~~~~~~Ll~~-~~~~ 327 (619)
T 3s94_A 265 QQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFY--QCACPTGVKLLEN---GKTCK----DGATELLLLA-RRTD 327 (619)
T ss_dssp GGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSE--EEECCTTCCBCTT---SSCBC----SSCSEEEEEE-ESSC
T ss_pred cccCCC--cccccc-----CCCCcccceEECCCCCCCc--eEeCCchheeccc---CcccC----CCCceEEEEE-cccc
Confidence 211000 000000 0000 0000000000000 0111211111000 00000 0011122222 2345
Q ss_pred cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEee-cCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1103)
Q Consensus 710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1103)
|+..++...... .+.++. .....+.+++|.+.+..|+.+. ..+.|..++......
T Consensus 328 i~~i~l~~~~~~---~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-------------------- 383 (619)
T 3s94_A 328 LRRISLDTPDFT---DIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-------------------- 383 (619)
T ss_dssp EEEEESSSTTCC---CEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------
T ss_pred eEEEecCCCccc---eeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--------------------
Confidence 555554432211 111121 1234567899998666565554 456676665432110
Q ss_pred CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeC-
Q 001310 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD- 864 (1103)
Q Consensus 789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~- 864 (1103)
..... ........+++...+..|..+. .+.|.+.++.... ...+. ..-.....+++.|..|.+..+-..
T Consensus 384 --~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~ 456 (619)
T 3s94_A 384 --QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGE 456 (619)
T ss_dssp --EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSS
T ss_pred --EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCC
Confidence 00000 1224566899997666565554 4789999987443 33333 334578999999944544444322
Q ss_pred CCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310 865 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1103)
.+.|...++............-.....|++++++..|..+. ..+.|...+++...... .+...-. ...+++
T Consensus 457 ~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~gla 528 (619)
T 3s94_A 457 IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFT 528 (619)
T ss_dssp SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEE
T ss_pred CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEE
Confidence 35777777663322222233345678999998766666554 45789899987644222 1111111 233455
Q ss_pred EcCCCCEEEEE--eCCeEEEEECCCc
Q 001310 944 FHKDQTRFLLV--HETHLAIYEAEEL 967 (1103)
Q Consensus 944 fs~dg~~l~~~--~d~~v~iwd~~~~ 967 (1103)
+..+ +|..+ ..+.|...|..+|
T Consensus 529 v~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 529 LLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EETT--EEEEECTTSSCEEEEESSSC
T ss_pred EECC--EEEEeecCCCeEEEEEcCCC
Confidence 5433 44443 4455666666655
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.78 E-value=0.0017 Score=81.88 Aligned_cols=568 Identities=10% Similarity=0.067 Sum_probs=276.3
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----cccceEeccccccEEEEEEecCC----CceEEEEE--cCCCceE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC----KQISVITC--GDDKTIK 468 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s~d~----~~~~l~s~--~~d~~i~ 468 (1103)
.++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .+ +++++ +.+|.++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~-i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQ-LVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCE-EEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCe-EEEEECcCCCCeEE
Confidence 567776555 778888777667777764321 1111122 244688888875421 23 33333 2567888
Q ss_pred EEeCCCC-ceeEEeec-CCCceEEEEeee-cCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-----CccEEEEEEccC
Q 001310 469 VWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-----GLGCTRMAYSAN 540 (1103)
Q Consensus 469 iwd~~~~-~~~~~~~~-~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~s~d 540 (1103)
+..-.-+ +.+..+.- .-..++.+.... +....+|+....+.+ +++.+... ........ ...+.+-.+ .+
T Consensus 407 ~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT
T ss_pred EEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC
Confidence 8742211 11122211 123444443221 123457777666666 45544321 22222111 111111111 22
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcC
Q 001310 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDA 618 (1103)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~ 618 (1103)
+ .++=... ..|++.+...+..+..+.... ...|...+.+. .+++.++ .+.+.++.+..++... ....
T Consensus 484 ~-~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l 552 (1158)
T 3ei3_A 484 Q-QLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEM 552 (1158)
T ss_dssp T-EEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEEC
T ss_pred C-eEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCC
Confidence 2 3333332 227777776665666665443 24566666543 4666665 6788888877664332 2222
Q ss_pred CCCCCCCceEEEecC------CCEEEEEEC-CCeEEEEEcCCCCeeEeccccc-cceeeeEEecCCceeeeeccCCceEe
Q 001310 619 GGGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSV 690 (1103)
Q Consensus 619 ~~~~~~v~~v~~s~~------g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~ 690 (1103)
. ..|.|+++.|. ++++++|.. |++++|+++++.+.+....-.. ....++.+.. +
T Consensus 553 ~---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~---------------~ 614 (1158)
T 3ei3_A 553 E---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTT---------------F 614 (1158)
T ss_dssp S---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE---------------E
T ss_pred C---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE---------------e
Confidence 2 35888888763 479999996 9999999998765553222111 1122222211 0
Q ss_pred cCCCCCCCccceeeccccccccccccc--cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc
Q 001310 691 NEDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1103)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 768 (1103)
....++..|-.||.+..+.++. +.........+ ...++.-..+...|..-+.+..+.-..++.-..
T Consensus 615 -----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~--- 682 (1158)
T 3ei3_A 615 -----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH--- 682 (1158)
T ss_dssp -----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESSS---
T ss_pred -----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcCC---
Confidence 1123445555555543333321 11111111111 122333333333333222222232222222110
Q ss_pred ccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE-EEEecC--CCEEEEEcCCeEEEEEcCCcee--eEEecCCC
Q 001310 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPS 843 (1103)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~d--~~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~ 843 (1103)
. +....+ ....+.. ..|+.. ..-++..+++.++|..+.+... ++++. -.
T Consensus 683 --------------------~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~ 736 (1158)
T 3ei3_A 683 --------------------K-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LY 736 (1158)
T ss_dssp --------------------S-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CS
T ss_pred --------------------c-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CC
Confidence 0 000011 1112222 223321 2345555566677777653322 22222 23
Q ss_pred CCeeEEEEcCCCCCEEEEEeC-------------------------------------------------CCeEEEEEcC
Q 001310 844 PTATSLAFNPHDNNVIAIGMD-------------------------------------------------DSTILIYNAR 874 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~-------------------------------------------------dg~v~iwd~~ 874 (1103)
..+..++++| ..+.++.+.. -+.|++.|-.
T Consensus 737 ~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~ 815 (1158)
T 3ei3_A 737 ESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH 815 (1158)
T ss_dssp SEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT
T ss_pred CCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC
Confidence 4667777877 4544443321 1246777777
Q ss_pred CceeEEEecc-CCCCEEEEE---EccC-CCEEEEEe----------CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCc
Q 001310 875 SSEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 939 (1103)
Q Consensus 875 ~~~~~~~l~~-h~~~V~~l~---~s~d-g~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 939 (1103)
+.+.+..++- ....+.+++ |..+ ..+++.|. ..|.|.++++..++...... ...+ +++
T Consensus 816 t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~------g~v 888 (1158)
T 3ei3_A 816 TFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVK------GAV 888 (1158)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEES------SCE
T ss_pred CCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcC------CcC
Confidence 7776655432 223344444 3333 47888776 34789999998544322111 1112 357
Q ss_pred eEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC--CCceeEEeec
Q 001310 940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA--SNLEVQCRIL 1017 (1103)
Q Consensus 940 ~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~--~~~~~~~~~~ 1017 (1103)
++++-- +| +|+++-.++|++|++...+.+.. ...+-..|..+.....+.++++|..-..|.+... ..+++...-.
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~ 965 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR 965 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence 776633 23 77788889999999986653331 1111112333333345678888876666666543 3433331111
Q ss_pred cccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 1018 STAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
++.+ .+..++.+-- ...++.+..+|.+.+.+...
T Consensus 966 --D~~~------------------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 --DFNP------------------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --CCSC------------------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred --eccc------------------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 2222 2223344432 35788899999999998743
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=4.6e-06 Score=97.65 Aligned_cols=166 Identities=9% Similarity=0.068 Sum_probs=108.4
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCceeEEEecc--CC--------CCEEEEEEccCCC--
Q 001310 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN-- 899 (1103)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s~dg~-- 899 (1103)
.+++.+ +...++.+..+ +.|..+|..+|+.+..++. |. .++. +....+|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~ 316 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT 316 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence 356777 44566655532 3699999999998877753 21 2221 22334774
Q ss_pred -EEEEEeCCCeEEEEEcCCCceeeeeeeec-C---------CCcc----------------cCC-----CCceEEEEcCC
Q 001310 900 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM----------------TLA-----PSETHIQFHKD 947 (1103)
Q Consensus 900 -~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~---------~~~~----------------~~~-----~~v~~l~fs~d 947 (1103)
.++.++.+|.+.+.|..+|+......+.. . .+.. ... ..-..++|+|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 67788899999999999998654332211 0 0000 000 00135789998
Q ss_pred CCEEEEE-e-------------------------------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccC
Q 001310 948 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 989 (1103)
Q Consensus 948 g~~l~~~-~-------------------------------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~d 989 (1103)
..++.+. . ++.|..||..+|+.+.+...+ ..+.+..+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence 8887763 2 368999999999988764432 23333334445
Q ss_pred CCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 990 g~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
+..+++++.||.|+.||..+|+.+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 6677778999999999999999998877
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=3e-06 Score=86.83 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=145.7
Q ss_pred ceeeEEecCCCC--CeeEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeEEEeccCC-CCEEEEEEccCCCEEEEEeCC
Q 001310 833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD 907 (1103)
Q Consensus 833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~s~d 907 (1103)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-.. .....+++.. +++.++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 45566664 332 468999999 6655554443 5799999999999888765211 1233455552 2444445568
Q ss_pred CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCC-C---cCeE
Q 001310 908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS-S---VPIS 982 (1103)
Q Consensus 908 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h-~---~~v~ 982 (1103)
+.+.++|..+.+.... +....+ ....+++||+.+.++ .+++|.++|.++.+.+..+..+. . ..+.
T Consensus 86 ~~v~viD~~t~~v~~~--i~~g~~--------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKN--FTHQMK--------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEEE--EECCSS--------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEEE--EECCCC--------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 8999999998775542 222111 124466788887775 56789999999988887765432 1 2367
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEec
Q 001310 983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLT 1062 (1103)
Q Consensus 983 ~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~ 1062 (1103)
.+.|. ||+..+....++.|.+-|..+++.+.++......+.... ..+.....+..++++|+...+++++..
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~--------~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLID--------EGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHH--------TTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccc--------ccccccCceEEEEEcCCCCEEEEECCC
Confidence 88888 776555555678999999999999988874322110000 001111234688999997778888889
Q ss_pred CCcEEEEccCCC
Q 001310 1063 NGEVYVIEPNEP 1074 (1103)
Q Consensus 1063 dg~v~vw~~~~~ 1074 (1103)
.+.|.+.++...
T Consensus 227 ~~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 WPKLFEIKLHLV 238 (266)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEecc
Confidence 999999998544
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=2.4e-05 Score=91.64 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=97.5
Q ss_pred CeEEEEEcCCceeEEEecc--CC--------CCEEEEEEc-cCCC---EEEEEeCCCeEEEEEcCCCceeeeeeeec-C-
Q 001310 866 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P- 929 (1103)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~- 929 (1103)
+.|..+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|+......+.. .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999887753 32 1221 1221 4674 78889999999999999998654322211 0
Q ss_pred --------CCc-------cc---------------CC-----CCceEEEEcCCCCEEEEE-e------------------
Q 001310 930 --------DGV-------MT---------------LA-----PSETHIQFHKDQTRFLLV-H------------------ 955 (1103)
Q Consensus 930 --------~~~-------~~---------------~~-----~~v~~l~fs~dg~~l~~~-~------------------ 955 (1103)
.+. .. .. ..-..++++|+..++.+. .
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 00 00 001256788876665542 1
Q ss_pred ---------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 956 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 956 ---------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
++.|.-||+.+|+.+.+...+ .++..-.....+..+++++.|+.++.||.++|+.+.++.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 467999999999988764432 223222233456678889999999999999999998887
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.69 E-value=3.4e-05 Score=90.33 Aligned_cols=378 Identities=11% Similarity=-0.005 Sum_probs=203.8
Q ss_pred EEEEEcC-CCceEEEeC-CCCceeEEeecCCCc-e----------EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE
Q 001310 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-V----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1103)
Q Consensus 457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 523 (1103)
.++.++. ++.|.-+|. .+|+.+.++...... + ..+++ .+..++.++.|+.+..+|..+++...
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3666666 889999999 899998776533210 0 11222 23478888899999999999999887
Q ss_pred EecCCCc----cEEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeEEEEeccccc-------------------
Q 001310 524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1103)
Q Consensus 524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1103)
....... .+.+ ..+ .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6654321 1111 111 134 455544311 11567999999999988776543200
Q ss_pred ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeEEEEcCCCCC---
Q 001310 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1103)
Q Consensus 578 ---------------~~-~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1103)
.. ....+++.++...++.+..+ +.|..+|..+|+.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00135566776777776532 35999999999998887643211
Q ss_pred -CCCce---EEEecCCC---EEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCC
Q 001310 623 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1103)
Q Consensus 623 -~~v~~---v~~s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1103)
..+.. +....+|+ .++.++.+|.+.++|..+++.+.........-..-.+.+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 677888899999999999988765542210000000000
Q ss_pred CCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccc
Q 001310 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 775 (1103)
..+..+..... .. .+........|.......-..++++|+...+++...+....++..+..
T Consensus 357 ~~g~p~~~~~~---------~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 357 KTGTPVRDPEF---------AT-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp TTCSEEECGGG---------CC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred cCCceeccccc---------CC-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 00000000000 00 000000111111001111135678999888888877654444432210
Q ss_pred cccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCC
Q 001310 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 855 (1103)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 855 (1103)
...+.. .......+..+|.+. ....++.+..||..+++.+.++.... .+.+..+.. .
T Consensus 418 ---------~~~g~~----------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQF----------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTSC----------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCCc----------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 000110 000011122233221 00124788899999998887765322 222222222 3
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEccCCCEEEE
Q 001310 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1103)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s 903 (1103)
+.++++++.||.|+.+|..+|+.+.++...... ...+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 457777999999999999999999888743221 122345577765553
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.67 E-value=6.5e-05 Score=87.97 Aligned_cols=378 Identities=11% Similarity=0.067 Sum_probs=201.8
Q ss_pred EEEEcCCCceEEEeCCCCceeEEeecCCCce---------EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC
Q 001310 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1103)
Q Consensus 458 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1103)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543449999999999988775433210 11222 2347888899999999999999988766543
Q ss_pred Cc----cEE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeeEEEEeccccc--------------------
Q 001310 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1103)
Q Consensus 529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1103)
.. .+. ...+.. +|+ .++++.... ..++.|+.+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111122 234 454443211 12678999999999987665431100
Q ss_pred ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeeEEE
Q 001310 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1103)
Q Consensus 578 ------------------~~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 615 (1103)
...-..+++.|+...++.+.. | +.|.-+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123456677778877663 2 5899999999999988
Q ss_pred EcCCCCC----CCCc-eEEEe---cCCC---EEEEEECCCeEEEEEcCCCCeeEecccccc--ceeeeEEecCCceeeee
Q 001310 616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1103)
Q Consensus 616 ~~~~~~~----~~v~-~v~~s---~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~ 682 (1103)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+ .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~--~~-------- 376 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHI--DL-------- 376 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEE--CT--------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccc--cc--------
Confidence 7643221 0111 12222 4674 788899999999999999988876543221 01111 00
Q ss_pred ccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEee
Q 001310 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1103)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~ 762 (1103)
..+.........|.. +.. . .+........|.......-..++++|+...+++...+-...++.
T Consensus 377 -~~g~p~~~~~~~~~~--~~~--~------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 377 -KTGRPVEREGQRPPL--PEP--G------------QKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp -TTCCEEECTTCSCCC--CCT--T------------CSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred -cCCCEeEccccCCcc--ccc--c------------ccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 000000000000000 000 0 00000111111111111122567788877777766553333332
Q ss_pred cCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCC
Q 001310 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842 (1103)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~ 842 (1103)
.+.. ...| ....-..+...|++ ...+|.|..||+.+++.+.+....
T Consensus 440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~----~~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEVS------------------YTKG------------SAYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CCTT------------SCCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------ccCC------------CceeccceeecCCC----CCCcceEEEEECCCCCEEEEecCC
Confidence 1110 0001 11111122222331 012578999999999988776532
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCCEEE
Q 001310 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 902 (1103)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~ 902 (1103)
. .+..-.... .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.+..||+..+
T Consensus 486 ~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 486 L-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp S-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred C-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 2 221111112 34578889999999999999999998887543322 2256667886444
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=9.4e-05 Score=86.30 Aligned_cols=381 Identities=11% Similarity=0.036 Sum_probs=201.9
Q ss_pred EEEEEcC-CCceEEEeC-CCCceeEEeecCCCc-----------eEEEEeeecC--CccEEEEEECCCeEEEEEcCCCCe
Q 001310 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA 521 (1103)
Q Consensus 457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 521 (1103)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+.. ....|+.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666666 889999999 899998777543211 1122331111 112378888999999999999998
Q ss_pred eEEecCCCc----cEEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeEEEEecccccC----------------
Q 001310 522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1103)
Q Consensus 522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1103)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876554321 1111 111 244 444443211 125789999999999887765432100
Q ss_pred ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeEEEEcCCCCCC
Q 001310 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 579 ------------------~~v-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
..+ ...++.++...++.+..+ +.|.-+|..+|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777788887665 379999999999998876543210
Q ss_pred ----CCce-EEEe---cCC---CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1103)
Q Consensus 624 ----~v~~-v~~s---~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1103)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998876543211000000000 0000000000
Q ss_pred CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1103)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 772 (1103)
...+ .+.....+..|.......-..++++|+...+++...+-...++.....
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000011111222111222235788999888887776633322211100
Q ss_pred ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeE-EEE
Q 001310 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS-LAF 851 (1103)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~ 851 (1103)
...+.. .-..-..+..+|.+........|.+..||+.+++.+.+.......... ++.
T Consensus 425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t 482 (599)
T 1w6s_A 425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT 482 (599)
T ss_dssp ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence 000100 000000011112110000002467888999999887776422111111 222
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCCEE
Q 001310 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL 901 (1103)
Q Consensus 852 s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 901 (1103)
.+.+++.++.||.++.||..+|+.+.+++-..+.+ .-+.+..||+..
T Consensus 483 ---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 483 ---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp ---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 34577779999999999999999998886433211 224555677643
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=3.4e-06 Score=84.96 Aligned_cols=184 Identities=12% Similarity=0.109 Sum_probs=126.9
Q ss_pred eeEEEEecCCCEEEEEc-CC--eEEEEEcCCceeeEEecCCCCC-eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310 805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1103)
...+.|+ ++.++.+.+ +| .|+.+|+.+++.++++...... --.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4678898 676666665 44 7999999999999888654322 2335554 34555556678999999999999999
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1103)
Q Consensus 881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v 959 (1103)
++..-. ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..+.. .++.|
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence 887422 223444678777776668889999999877655433321 11110 134457776 77766555 67899
Q ss_pred EEEECCCceEEEEeeCCC-----------CcCeEEEEEccCCCEEEEEec
Q 001310 960 AIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV 998 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~t~~~ 998 (1103)
.+.|.++|+.+..+-... ..-...|+|+|+++.|++.+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999987754321 234588999999887776663
No 262
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.59 E-value=0.0045 Score=75.83 Aligned_cols=534 Identities=11% Similarity=0.043 Sum_probs=284.6
Q ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1103)
Q Consensus 396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1103)
...|.++.-..+|. |-.|+.+| +..||-..-+..... -......|.++....+|. |..|+.+| +..+|..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 46799999888875 44556777 666663221111100 011234688888777775 44555554 889998776
Q ss_pred ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe----cCCCccEEEEEEccCCCEEEEEecCC
Q 001310 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
+...........|.++.. .++ .|..++.+ -+..+|..+.+..... ......|.++....+|...+.. .
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-- 164 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-- 164 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence 533211112234666543 244 45555655 5777887665433220 1223468888888888876643 2
Q ss_pred CCceeEEEEeCCCCeeEEEEeccc---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1103)
. -+..++..+++... +.... .....|.++....++..|..|+. +-+..+|..+++........ ...|.++
T Consensus 165 --~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i 237 (758)
T 3ott_A 165 --N-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSL 237 (758)
T ss_dssp --T-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEE
T ss_pred --C-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEE
Confidence 1 27888887765432 22111 01234888888777776666664 46888998876543221111 1236777
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeEecc-------ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAG-------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1103)
Q Consensus 629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1103)
....+|.+.+ |+.+ -+.+++..+........ .....|.++.....+ ..-
T Consensus 238 ~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g----------------------~lW 293 (758)
T 3ott_A 238 ALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH----------------------NIW 293 (758)
T ss_dssp EECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC----------------------CEE
T ss_pred EEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC----------------------CEE
Confidence 7777776555 4544 57788876553321111 112234444443222 211
Q ss_pred eeeccccccccccccccCCccceeeec---cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccccc
Q 001310 702 ISVEAENKSEVEKPLFARPSECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 778 (1103)
Q Consensus 702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 778 (1103)
+ |...| +.+.... ........ ........|.++....+|..-+. +.+|. ..++-..... .
T Consensus 294 i-GT~~G-l~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl-~~~~~~~~~~---------~ 356 (758)
T 3ott_A 294 L-GTDYG-ISLSRYN----SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGL-IRFTDPAGER---------H 356 (758)
T ss_dssp E-EESSS-EEEECCC----C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEE-EEESCTTSSC---------C
T ss_pred E-EeCCc-ccccccC----CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcc-eeeccccccc---------c
Confidence 1 11122 2111110 00000000 01112356888888888875444 45553 3333221100 0
Q ss_pred CCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEe--cC----CCCCeeEEEEc
Q 001310 779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFN 852 (1103)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s 852 (1103)
....+...... .. -....|.++...++|++.+.. ++.+..+|..+++...-. .. ....|.++...
T Consensus 357 ~~~~~~~~~~~----~~----l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 427 (758)
T 3ott_A 357 DAIWYRMGDKT----YP----LSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFED 427 (758)
T ss_dssp CCEEECTTCSS----SC----CSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEEC
T ss_pred eeEEeccCCcC----CC----CCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEc
Confidence 01111110000 00 134568899988888877755 567999998877543321 11 23467888887
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCc-----eeE---EEec---c-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCce
Q 001310 853 PHDNNVIAIGMDDSTILIYNARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 920 (1103)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~~-----~~~---~~l~---~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~ 920 (1103)
+ +++ |-.|+..+-+.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++.
T Consensus 428 ~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 428 T-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp T-TSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred C-CCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 6 554 555776666888885531 111 1111 1 123589999999998776444444588899887654
Q ss_pred eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCC-CCcCeEEEEEccCCCEEEEEecC
Q 001310 921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
... .. .+. .....+.++....+|.+.+.+. +-+..|+..+++...-...+ ....|.++... +|. |..++..
T Consensus 506 ~~~---~~-~~~-~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~ 577 (758)
T 3ott_A 506 TKL---FA-DEL-TGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTN 577 (758)
T ss_dssp EEE---CT-TTS-CGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESS
T ss_pred EEe---cC-CCc-CCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCC
Confidence 331 11 110 0012578888889998887654 56888887665432210011 13567777763 554 5555556
Q ss_pred CcEEEEeCCCceeE
Q 001310 1000 GTLSIHEASNLEVQ 1013 (1103)
Q Consensus 1000 g~v~vWd~~~~~~~ 1013 (1103)
| +..+|..+.+..
T Consensus 578 G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 578 G-LWIIDRKTMDAR 590 (758)
T ss_dssp C-EEEEETTTCCEE
T ss_pred C-eEEEcCCCceeE
Confidence 5 778898877643
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=5.1e-06 Score=83.61 Aligned_cols=182 Identities=7% Similarity=0.061 Sum_probs=125.7
Q ss_pred CeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCe--eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1103)
-...+.|+. +.++.+.+ +|.|+++|+++++.++++ -. ... -.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788873 55555555 688999999999998887 22 233 335554 45666667788999999999999999
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1103)
Q Consensus 881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v 959 (1103)
++..- ..- ..+++|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..+.. .++.|
T Consensus 131 ti~~~-~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-Cce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeE
Confidence 88742 222 334467888887777999999999998766543332211111 134567777 77655555 57799
Q ss_pred EEEECCCceEEEEeeCC------------CCcCeEEEEEccCCCEEEEEe
Q 001310 960 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 960 ~iwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
.+.|.++|+.+..+-.+ -..-...|+++|+++.|++.+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999988775432 123568899999876665554
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=8.6e-06 Score=99.34 Aligned_cols=248 Identities=10% Similarity=-0.008 Sum_probs=134.3
Q ss_pred CceEEEec-CCCceEEEEEcCCC----cEEEEECCCC-CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1103)
Q Consensus 336 ~V~~v~~s-pdg~~llasgs~d~----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 409 (1103)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . + ......++|||||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 67889999 99996555544433 4999999998 63321 0 0 01234688999999
Q ss_pred EEEEEeCC-----CeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEc-CCCceEEEeCCCCc-ee--E
Q 001310 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1103)
Q Consensus 410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 479 (1103)
.|+....+ ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887665 3588888877642211 1222 223346688999999963333322 23468888988763 22 3
Q ss_pred Ee-ecCCCceEEEEeeecCCccEEEEEECC--C--eEEEEEcCCCCeeEE-ecCCCc--cEEEEEEccCCCEEEEEecCC
Q 001310 480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 480 ~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
.+ ........++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 33 3334455555432 233344444443 2 566667654222112 222222 3444444 4566655543 2
Q ss_pred CCceeEEEEeC-------CCCeeEEEEecccccCCceEEEEE----cCCCCEE-EEEeCC---CcEEEEECCCCee
Q 001310 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 612 (1103)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~~~d---g~i~iwd~~~~~~ 612 (1103)
++...|+++++ .+++....+.... ...+..+.+ ++++..+ ++.+.. ..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34567888886 4443133332211 122333322 3455544 333322 4677888877654
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=1e-05 Score=81.53 Aligned_cols=185 Identities=13% Similarity=0.056 Sum_probs=129.8
Q ss_pred EEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCce-EEEEeeecCCccEEEEEECCCeEEEEEcCCCC
Q 001310 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1103)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1103)
...+.|+ ++. +..+.+.+| .|+++|+++|+.+..+....... ..+++ . ++.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~-g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--W-KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--e-CCEEEEEEeeCCEEEEEECccCc
Confidence 4788898 654 666777666 89999999999998886443221 23444 3 23455555568999999999999
Q ss_pred eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc--cCCceEEEEEcCCCCEEEEEeC
Q 001310 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 598 (1103)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 598 (1103)
...++..... ...+++|++.|+.+. +...|.++|..+.+.+..+..... .-..++.+.|. +|...+..-.
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 8887765442 234557888887753 256799999999998888765320 11345567776 6654444447
Q ss_pred CCcEEEEECCCCeeEEEEcCCCC----------CCCCceEEEecCCCEEEEEEC
Q 001310 599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
++.|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999998876421 123478999999888887775
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=1.8e-05 Score=85.78 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=145.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEec-----------------cccccEEEEEEec-CCCceEE
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV 458 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-----------------~h~~~v~~~~~s~-d~~~~~l 458 (1103)
.....++|+++|+++.++..++.|..|+..++.. ....... .....+..+++.+ +++ |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 4556789999999888888889999998876532 1110000 1123578999998 665 4
Q ss_pred EEEcCCCceEEEeCCCCceeEEeec-----CCCceEEEEeeecC-CccEEEEEEC-----------------CCeEEEEE
Q 001310 459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL 515 (1103)
Q Consensus 459 ~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd 515 (1103)
+.+...+.|..+|..++.. ..+.. .......+++. + +|.+.++... ++.|..+|
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444445588898766543 22211 11245667774 4 5555555432 36788888
Q ss_pred cCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEE
Q 001310 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1103)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1103)
..++....... .......++++++|+.|+.+.. ..+.|+.+++.... ....+.... + ...+++.++|+..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence 76554332211 1123456899999997776643 24569999987521 122222222 3 6788999999866
Q ss_pred EEEeC----------CCcEEEEECCCCeeEEEEcCCCC--CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310 594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1103)
Q Consensus 594 ~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~ 653 (1103)
++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++....+.|..+++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66544 467888887 4777777765432 234566666 4565555555678898888764
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.46 E-value=5.2e-05 Score=75.75 Aligned_cols=186 Identities=10% Similarity=0.043 Sum_probs=126.5
Q ss_pred CCCeeEEEEecCCCEEEEEc-C--CeEEEEEcCCceeeEEecCCCCC-eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310 802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1103)
..-...+.|+. +.++.+.+ + +.|+.+|+.+++.++.+...... --.+++. ++++......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456889986 55555555 2 47999999999999888644332 2344554 45566667788999999999999
Q ss_pred eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eC
Q 001310 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 956 (1103)
Q Consensus 878 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d 956 (1103)
.+.++..-. .= ..+++|++.|..+..++.|.++|..+.+......+... +... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-Cccc--ccceeeEEe-CCEEEEEECCC
Confidence 999887432 22 33446777777667788999999999776553333221 1110 134556655 67655554 67
Q ss_pred CeEEEEECCCceEEEEeeCC------------CCcCeEEEEEccCCCEEEEEe
Q 001310 957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 957 ~~v~iwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
+.|.+.|.++|+.+..+-.+ -..-.+.|+++|+++.|++.+
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 79999999999998775422 123558899999887766665
No 268
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.45 E-value=0.0097 Score=72.84 Aligned_cols=566 Identities=11% Similarity=0.054 Sum_probs=289.8
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
...|.++.-..+|..+++ +.+| +..||-.+ ...... . .......|.++....+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lWig--T~~G-L~ryDG~~---~~~~~~-------------~--~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIG--SNKG-LFSYDGYS---TQQHFT-------------Y--GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEEEE--ESSC-EEEECSSC---EEECSC-------------T--TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEEEE--ECCC-ccccCCCc---eEEEEc-------------c--CCCCCceEEEEEEcCCC-cEEE
Confidence 347999999999974443 4555 56676321 111000 0 01124568888877766 5556
Q ss_pred EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee-----cCCCce
Q 001310 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 488 (1103)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v 488 (1103)
|+.+| +..||..++.... . .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~-~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ-P--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC-C--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC-c--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 7899987753211 1 1112235777654 4554 4444444 5888997766543 231 123457
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cC----CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1103)
.++.. +.++.+.+ ++.. -+..++..+....... .. ....|.++...+++..|..++.. -+..+|..
T Consensus 149 ~~i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-----Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-----YLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-----EEEEEETT
T ss_pred EEEEE--cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-----CCeEEcCC
Confidence 77665 33444444 5544 4666776654432211 11 12247888888877765555421 28889988
Q ss_pred CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEE
Q 001310 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~ 638 (1103)
+++.... .... ...|.++....++.. ..|+. +-+.+++..+++......... ....|.++....+|.+.
T Consensus 220 ~~~~~~~-~~l~--~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW- 293 (758)
T 3ott_A 220 TGQIKQT-EAFH--NNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW- 293 (758)
T ss_dssp TTEEEEE-EEEE--EEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-
T ss_pred CCeEEec-cCCC--CCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-
Confidence 7764332 2111 246888888777754 44554 458888887765433221110 11236677777777644
Q ss_pred EEECCCeEEEEEcCCCCeeEecc-----ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccc
Q 001310 639 VIANENRIKILETPESNSVDAAG-----VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 713 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w 713 (1103)
+|+..| +.++.....-...... .....|.++.... +|.+.+. ..+| +..+
T Consensus 294 iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~----------------------~g~lWiG-t~~G-l~~~ 348 (758)
T 3ott_A 294 LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS----------------------KGFYWFG-GANG-LIRF 348 (758)
T ss_dssp EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT----------------------TCCEEEE-ETTE-EEEE
T ss_pred EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC----------------------CCCEEEe-eCCc-ceee
Confidence 455556 5444322111111110 0112334333332 2222221 2222 2222
Q ss_pred cccccCCccceeeec---cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc
Q 001310 714 KPLFARPSECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1103)
Q Consensus 714 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1103)
+.............. +.......|.++.-..+|..-+ ++. +-+..|+...... ..+.....
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~------------~~~~~~~~-- 412 (758)
T 3ott_A 349 TDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQF------------IHYNIVDN-- 412 (758)
T ss_dssp SCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEE------------EEEEEECC--
T ss_pred cccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcE------------EEeecCCC--
Confidence 222111001101100 0011235688888888887544 443 4566666433221 11100000
Q ss_pred eeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCc-----eee---EEec---C-CCCCeeEEEEcCCCCCE
Q 001310 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNV 858 (1103)
Q Consensus 791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~ 858 (1103)
........|.++...++|.+.+....+-+.++|..+. ... ..+. + ....|.++...+ ++++
T Consensus 413 ------~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l 485 (758)
T 3ott_A 413 ------TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNV 485 (758)
T ss_dssp ------C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCE
T ss_pred ------cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCE
Confidence 0000235688888888888777665667888886531 111 1111 1 234688999988 7776
Q ss_pred EEEEeCCCeEEEEEcCCceeEEEecc---CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310 859 IAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1103)
Q Consensus 859 lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1103)
.+.++..+-|..+|..+++....... ....+.++....+|.+.+. +..| +..++..+++.... . ..+..
T Consensus 486 Wi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~---~-~~gl~-- 557 (758)
T 3ott_A 486 WVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI---S-FGSFS-- 557 (758)
T ss_dssp EEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC---C-CCC----
T ss_pred EEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe---c-ccCCC--
Confidence 65333345588899887764432211 1346888888888877764 4555 88888876553221 1 11111
Q ss_pred CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEecCCcEEEEeCC
Q 001310 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
...|.++... +|++.+++ ++.|..+|..+.+...- ......+....+. +||. |..|+.+| +..++..
T Consensus 558 ~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~-l~fG~~~G-l~~f~p~ 625 (758)
T 3ott_A 558 NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQ--NMTNKRFTSLLFDPKEDC-VYLGGADG-FGISHSN 625 (758)
T ss_dssp -CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSE-EEEEEC-
T ss_pred ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEe--cCCCCceeeeEEECCCCc-EEEecCCc-eEEEChh
Confidence 1357777764 66655555 55588899887765431 1112233344443 4665 55577777 4455654
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.44 E-value=2.2e-05 Score=79.06 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=128.6
Q ss_pred EEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce--EEEEeeecCCccEEEEEECCCeEEEEEcCCCCe
Q 001310 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521 (1103)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 521 (1103)
...+.|+. +. +.++.+.+|.|+++|+++++.+..+ -. ... ..+++ . ++.+.+..-.++.+.+||..+.+.
T Consensus 57 tqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~--~-g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 57 TQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLAS--D-GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEE--C-SSCEEEEESSSCEEEEEETTTTEE
T ss_pred cceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEE--e-CCEEEEEEccCCEEEEEECCcCcE
Confidence 46788873 44 7788888899999999999999887 22 222 33444 3 234555666789999999999998
Q ss_pred eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc--cCCceEEEEEcCCCCEEEEEeCC
Q 001310 522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDD 599 (1103)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d 599 (1103)
..++...... ..+++|++.|+.+. +...|+++|..+.+.+..+..... .-..++.+.|. +|...+....+
T Consensus 129 ~~ti~~~~eG---wGLt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 129 ERTTRYSGEG---WGLCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp EEEEECSSCC---CCEEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred EEEEeCCCce---eEEecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 8877654332 34447788888764 366799999999999888765331 11245667776 66444434468
Q ss_pred CcEEEEECCCCeeEEEEcCCC-----------CCCCCceEEEecCCCEEEEEEC
Q 001310 600 HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
+.|.+.|..+++.+..+...+ .....+.+|++|+++.|++.+.
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 899999999999998886531 1123578999998776666554
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.43 E-value=9.3e-05 Score=80.13 Aligned_cols=267 Identities=10% Similarity=0.034 Sum_probs=148.2
Q ss_pred cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeE--eeccccccceeeeeccCCCccEEEEEECC-
Q 001310 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV--WDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1103)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~~~~sp- 406 (1103)
+.+.-....+++++++|+ ++.++..++.|..||..+++...- .... +....|..... .........+..+++.+
T Consensus 14 ~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTD-AEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp EECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCC-GGGHHHHCCEEEEEEETT
T ss_pred cCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccc-hhccccCCCCceEEEcCC
Confidence 344334678899999998 567788889999999876643210 0000 00000000000 00000113578899998
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccccce-Eecc-ccccEEEEEEec-CCCceEEEEEcC-----------------CCc
Q 001310 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DKT 466 (1103)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~-~l~~-h~~~v~~~~~s~-d~~~~~l~s~~~-----------------d~~ 466 (1103)
+|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|. +.++-.. ++.
T Consensus 91 ~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 91 NNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCce
Confidence 555 55554455588888765532 1111 1111 113468899999 887 4554322 367
Q ss_pred eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEE-EEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCCE
Q 001310 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRR 543 (1103)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~ 543 (1103)
|..||..+++....... ......++++ +++..|+ +-...+.|.++++.... ....+..... ...+++.++|++
T Consensus 167 v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 242 (322)
T ss_dssp EEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred EEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence 88899877764332221 1234556774 4666554 44567899999987532 1111111222 678999999987
Q ss_pred EEEEecCC------CCceeEEEEeCCCCeeEEEEeccccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310 544 LFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 544 l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
.++..... ...+.|..+|. .++.+..+...... ...+..+++ .+++.+++....+.|.++++..
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66654310 01356888887 47777777654311 134566666 3454444445677888888753
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.00015 Score=73.82 Aligned_cols=207 Identities=8% Similarity=0.010 Sum_probs=134.4
Q ss_pred EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1103)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 407 (1103)
+.|.+-.+++..++|+|++.+|.++...++.|...|.. |+.+.... +.+ ....-.+++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 46677777999999999887788888889999999988 77665422 222 256778899999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccccceEec------cccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---CCcee
Q 001310 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRT 478 (1103)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~ 478 (1103)
+.++++.-.++.+.++++.....+....... ........++|+|+++. |+++.......+|.+. .+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9887776667889999987654322111111 23345689999999985 3334433333444432 12222
Q ss_pred EEee-------cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---------ccEEEEEEccCCC
Q 001310 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1103)
Q Consensus 479 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~ 542 (1103)
..+. .+...+.+++++|. .+++++.....+.+.++|.+.. ....+.... .....|+|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345688899875 4577777888888999987654 433333221 2568999999998
Q ss_pred EEEEEecCCCCceeEEEEeC
Q 001310 543 RLFSCGTSKEGESFLVEWNE 562 (1103)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1103)
..+++ . .+.++.+..
T Consensus 237 lyIvs-E----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIVS-E----PNRFYRFTP 251 (255)
T ss_dssp EEEEE-T----TTEEEEEEC
T ss_pred EEEEc-C----CceEEEEEe
Confidence 66553 2 335666543
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.40 E-value=9.7e-05 Score=79.24 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=138.3
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCC-ceEEEeCCC
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT 474 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 474 (1103)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776678899999887532 111 1 1234688999999998 444443 332 466778778
Q ss_pred CceeEEeec-CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-e-------c--CCCccEEEEEEccCCCE
Q 001310 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1103)
Q Consensus 475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~ 543 (1103)
++....... .......++.. .++..+++...++.|.++|......... . . ........+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 775433221 12223344432 2334455544688888888765422111 0 0 111234455 889988
Q ss_pred EEEEecCCCCceeEEEEeCCC-Cee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1103)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 620 (1103)
|+.+.. ..+.|+.+++.. ++. ...+.. . .....++++++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 356799999864 322 111211 1 235568899999877776678899999975 55533222122
Q ss_pred CCCCCceEEEe---cCCCEEEEEECCC
Q 001310 621 GLPENPRICFN---KNGTLLAVIANEN 644 (1103)
Q Consensus 621 ~~~~v~~v~~s---~~g~~l~~~~~dg 644 (1103)
......+++|. |+++.|++.+..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 22346889998 8888887776643
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00065 Score=74.03 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=153.0
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
+..+|.+..+++. ++++ ....|+..++........ .. ....+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEEE
Confidence 4567777777553 4444 235688788765433211 22 23457899999876666655
Q ss_pred -eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310 415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1103)
Q Consensus 415 -~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1103)
...+.|..+++.++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 456789999988754221 12222234578899986664 4555666778999997655443334344456788888
Q ss_pred eecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEe
Q 001310 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1103)
.+. ++.++++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 653 34455555555 78888887764443333333446789999998888877643 25679999986543333333
Q ss_pred cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
... .....+++ .++..+++-...+.|..++..+|+....+.
T Consensus 243 ~~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC---CCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 45667777 344444455567788888876776665554
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.38 E-value=5.9e-05 Score=90.60 Aligned_cols=121 Identities=11% Similarity=0.168 Sum_probs=76.1
Q ss_pred EEEEcc-CCCEEEEEecCCCC-------ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEE
Q 001310 534 RMAYSA-NGRRLFSCGTSKEG-------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 604 (1103)
Q Consensus 534 ~~~~s~-dg~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 604 (1103)
..++.+ +++.++.++.+.+. ...+.+||..+++..........+.....++++..++..++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 88888887754321 23689999988764332211111112334567778899888887 4568999
Q ss_pred EECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CC-----CeEEEEEcCCCC
Q 001310 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN 655 (1103)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d-----g~i~iw~~~~~~ 655 (1103)
||..+.+....-..+.. ..-.+++..++|++++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99988765543322221 1123566677999999988 34 457788876653
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=9.8e-05 Score=79.21 Aligned_cols=238 Identities=11% Similarity=0.032 Sum_probs=139.5
Q ss_pred cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1103)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 403 (1103)
.+.+..+..+ .....++|+|+|+ ++++...++.|..||..++ .... +. ....+..++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~-----~~---------------~~~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIH-----AT---------------VEGKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEE-----EE---------------CSSEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEE-----Ee---------------CCCCceeEE
Confidence 4455555444 3778999999998 7777777899999997653 2211 11 124688999
Q ss_pred ECCCCCEEEEEeCC-C-eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce-eEE
Q 001310 404 WSPDGSLLGVAYSK-H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYS 480 (1103)
Q Consensus 404 ~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~ 480 (1103)
++++|+++++.... + .|..++..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +..
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEE
Confidence 99999976665433 2 4666777776532 111221 122234555555554 555655688899999776532 211
Q ss_pred ee---------cCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCC-CCe--eEEecCCCccEEEEEEccCCCEEEEE
Q 001310 481 FE---------GHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 481 ~~---------~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1103)
.. ..-.....+ ++ ++. ++++-...+.|..++++. +.. ...+.. ......++++++|++.++.
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEEC
T ss_pred ECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEe
Confidence 11 111123444 33 344 455556678999999875 221 111111 1234568999999876554
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEc---CCCCEEEEEeCC
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDD 599 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 599 (1103)
.. .+.|.++|.. ++......... ......+++|. ++++.|++++..
T Consensus 230 ~~----~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HI----YNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BT----TCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC----CCeEEEECCC-CCEEEEeeccc-ccCCceEEEEecccCCCCEEEEECCC
Confidence 32 4559999975 65533211111 12568899998 888888776643
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.37 E-value=0.00087 Score=71.94 Aligned_cols=238 Identities=10% Similarity=-0.038 Sum_probs=145.0
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC---CceeE-EeecCC
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG 485 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~~~~~~ 485 (1103)
+|+.+.. ..|+..|+.+++... .+ ........++|++++.. ++++-...+.|..+++.. +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 458888888765332 22 23456789999987664 455566678999999876 22222 233233
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 44577777543 34555666778899999987655444444344567899999977777665431 135688888753
Q ss_pred eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 644 (1103)
.....+.... -.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3333332211 25688999999887777655 5678999998754332222222222234577775 355555666678
Q ss_pred eEEEEEcCCCCeeEec
Q 001310 645 RIKILETPESNSVDAA 660 (1103)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1103)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8988887766555444
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.35 E-value=6.9e-05 Score=90.04 Aligned_cols=278 Identities=10% Similarity=0.032 Sum_probs=154.5
Q ss_pred EEEecC-CCceEEEEEcCCC-----------cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1103)
Q Consensus 339 ~v~~sp-dg~~llasgs~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 406 (1103)
++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 787 677776432 57888888775332100 0122333445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CC-----CceEEEeCCCCceeE
Q 001310 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRTY 479 (1103)
Q Consensus 407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~ 479 (1103)
+|+.+++|+. +..+.+||..+++-.. ...+.... .-.+++..++|+ +++.|+ .+ ..+.+||..+++-..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCccee
Confidence 9999999984 4579999998764221 11111111 113455667888 677777 44 468999988776433
Q ss_pred EeecCC-Cce----EEEEeeecCCccEEEEEECCC---------eEEEEEcCCCCeeEEecCC---------CccEEEEE
Q 001310 480 SFEGHG-APV----YSLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA 536 (1103)
Q Consensus 480 ~~~~~~-~~v----~~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~i~~~~ 536 (1103)
. .... .+. ....+ ..++..++.++.+| .+..||..+.......... ...-.++.
T Consensus 329 ~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 329 L-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp E-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred C-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 2 1000 000 00001 12334445554443 4677887766533222111 11223444
Q ss_pred Ecc-CCCEEEEEecCCC----Cce---eEEEEeCCCCeeEEEE--ecccccCCceEEEEEcCCCCEEEEEeCC-------
Q 001310 537 YSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------- 599 (1103)
Q Consensus 537 ~s~-dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 599 (1103)
|.. +++.+++++.+.. ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 543 6777777664221 011 5888998877655443 1111 1223445567899999998754
Q ss_pred ----CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310 600 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1103)
Q Consensus 600 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 642 (1103)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999988765432222211112234556789999999885
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00083 Score=73.19 Aligned_cols=248 Identities=10% Similarity=-0.032 Sum_probs=153.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1103)
..+|.+..++ .+|+.+. ...|+..++.+.... .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 3455666663 3454443 344777777664321 12223345789999987664 455556678899999877654
Q ss_pred eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1103)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1103)
...+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+...... ...|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence 4444333344567777543 345666666778999999886655444444445678999999777776654311 3678
Q ss_pred EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001310 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1103)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 636 (1103)
+..++............ ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 88887644332222221 24678999998777776654 5678999998754433333322 223467777 34555
Q ss_pred EEEEECCCeEEEEEcCCCCeeEecc
Q 001310 637 LAVIANENRIKILETPESNSVDAAG 661 (1103)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1103)
+++-...+.|..++..+++....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 5555567888888866665555444
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.00053 Score=75.96 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=154.1
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~- 414 (1103)
.-.|.+..+++ +++++ ....|+..++.++..... .. ....+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~~-~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------EC-SCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------ec-CCCccEEEEEecCCCeEEEEe
Confidence 45576776754 34443 236788888876543321 11 23457899999866666555
Q ss_pred eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1103)
...+.|..+++.++.... .+.........+++.+.+.. +.++-...+.|.+.++........+.........+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999988754211 12222234567899886664 45555667789888876554433444444567888886
Q ss_pred ecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310 495 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1103)
Q Consensus 495 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1103)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 53 34445554445 78888888765554444444456789999998888877643 256799999865433333332
Q ss_pred ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
.. .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 45677777 3444455555778888888777776666653
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.33 E-value=0.00051 Score=76.12 Aligned_cols=247 Identities=11% Similarity=-0.037 Sum_probs=153.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1103)
Q Consensus 400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1103)
.|.+..+ ..+|+.+. ...|+..++.++... .+......+..++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~----~~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEE----EEecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 34454443 345888888765422 22223345789999987664 45555667889999987765444
Q ss_pred EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+-.. ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 44333334566777543 34556666677889988887655444444444567899999988777766432 1367888
Q ss_pred EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1103)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 638 (1103)
+++............. .....++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.+++
T Consensus 230 ~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 8876543333332222 4578999998777776654 5678999998754433333322 233467777 3455566
Q ss_pred EEECCCeEEEEEcCCCCeeEeccc
Q 001310 639 VIANENRIKILETPESNSVDAAGV 662 (1103)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1103)
+-...+.|..++..+++....+..
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEEC
T ss_pred eeCCCCeEEEEECCCCcceEEEcc
Confidence 666678888888766665555543
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0023 Score=68.94 Aligned_cols=235 Identities=9% Similarity=0.037 Sum_probs=130.5
Q ss_pred CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEec---CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1103)
Q Consensus 802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1103)
...+.++++++ +..++++..+.|.. ....|+.-.... .....+..+++.+ +++.++++ .+|.|+. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 55666665664433 222233322222 2234577888876 66666655 4564432 2222332
Q ss_pred E-EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC
Q 001310 879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1103)
Q Consensus 879 ~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~ 957 (1103)
- .....+...+..+++.+++.+++.+...+..+-+|-. +.. ...+.... ...+..++++++++.++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t--W~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA--WEPHNRTT-----SRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS--CEEEECCS-----SSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc--eeECCCCC-----CCccceeEECCCCCEEEEeCCc
Confidence 2 2223456678999999999888766444433333321 221 11121111 1257889999999988888888
Q ss_pred eEEEEECCCceEEEEeeCC---CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeE
Q 001310 958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCF 1034 (1103)
Q Consensus 958 ~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1103)
.+++.+.+.|+.-.....+ +...+..+.+.+++..++++ .+|.| .+..+.|+.-..+.... +
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~--~----------- 290 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVK--K----------- 290 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGT--T-----------
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccC--C-----------
Confidence 8887754445443332222 23468899999888877765 57766 45556564332222000 0
Q ss_pred eeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1035 CYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1035 ~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
....++. +.+.+ +..+++++.+|.|.-++-
T Consensus 291 ---~~~~~~~--v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 291 ---VPSNFYK--ILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp ---SSSCCCE--EEEEE--TTEEEEECSTTEEEEECC
T ss_pred ---CCCCeEE--EEEEC--CCceEEEcCCceEEEEcC
Confidence 1122443 33432 356777888997765543
No 282
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.31 E-value=0.00017 Score=71.98 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=125.0
Q ss_pred CCccEEEEEECCCCCEEEEEeCC--CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
...-...+.|++ +.+..+.+.+ ..|+++|+.+++.+... .+..+ ........++.. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5555665554 48999999999866533 22222 222223334554 3444567889999999
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-----ccEEEEEEccCCCEEEEE
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 547 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~dg~~l~~~ 547 (1103)
++.+.+.++..... -..++. ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+..+..
T Consensus 93 ~tl~~~~ti~~~~~-Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 93 ATLTPRARFRYPGE-GWALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTEEEEEEECSSC-CCEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcCcEEEEEeCCCC-ceEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 99999999875432 244443 44556666678999999999888776654422 234556654 66544433
Q ss_pred ecCCCCceeEEEEeCCCCeeEEEEeccc----------ccCCceEEEEEcCCCCEEEEEeC
Q 001310 548 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 598 (1103)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~ 598 (1103)
-. ...|.+.|..+|+.+..+.... ......+.++++|+++.|+..+.
T Consensus 167 w~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 22 3469999999999998876431 12346799999999888888774
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.00087 Score=68.12 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=133.6
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1103)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~ 916 (1103)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556899999999556677778889999999998 887777632 22457889999999877776677889999987
Q ss_pred CCce-eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCC--eEEEEEC-CCceEEEEe------eCCCCcCeEEEE
Q 001310 917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET--HLAIYEA-EELTCLKQW------FPISSVPISQAT 985 (1103)
Q Consensus 917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~--~v~iwd~-~~~~~~~~~------~~~h~~~v~~l~ 985 (1103)
.... ..........+..........++|+|+++.|.++ ... .|+.|+- .....+... ...+-..+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 1112222111111222357999999999777765 333 4555551 011111111 012344678999
Q ss_pred EccCCC-EEEEEecCCcEEEEeCCCceeEEeecccc-ccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecC
Q 001310 986 FSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN 1063 (1103)
Q Consensus 986 fs~dg~-~l~t~~~dg~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d 1063 (1103)
|.|... +++.+.....+.++|... +.+..+.... ..+.. ..--.+=.++++|+ |++.+ +++.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~-------------~~~~qpEGia~d~~-G~lyI-vsE~ 243 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLS-------------HNIKQAEGVAMDAS-GNIYI-VSEP 243 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCS-------------SCCCSEEEEEECTT-CCEEE-EETT
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcc-------------cccCCCCeeEECCC-CCEEE-EcCC
Confidence 998654 555566778899999774 4554444221 11100 00122457889998 76544 4788
Q ss_pred CcEEEEcc
Q 001310 1064 GEVYVIEP 1071 (1103)
Q Consensus 1064 g~v~vw~~ 1071 (1103)
+.+.+++.
T Consensus 244 n~~y~f~~ 251 (255)
T 3qqz_A 244 NRFYRFTP 251 (255)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEe
Confidence 86666654
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.26 E-value=0.0015 Score=72.54 Aligned_cols=249 Identities=9% Similarity=-0.033 Sum_probs=154.2
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC----ceeEEeecCC
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 485 (1103)
+|+.+ ....|+..++.+.... .+......+..++|++.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 3467888888765422 22334557889999987664 4455556778999997652 2233333344
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|+..++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 56778888643 34566666678899999988766555554445567899999977777665421 1356888887654
Q ss_pred eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 644 (1103)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 4333333222 5688999998888887764 5678999998765444444332222334566663 344555556678
Q ss_pred eEEEEEcCCCCeeEeccccccceeeeE
Q 001310 645 RIKILETPESNSVDAAGVLSDNLRKLS 671 (1103)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~ 671 (1103)
.|..++..+++.+..+.........+.
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceEE
Confidence 888888777766655543333333333
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.00024 Score=79.83 Aligned_cols=248 Identities=12% Similarity=0.034 Sum_probs=143.3
Q ss_pred CCeeEEEEec-CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeC-CC----eEEEEEcCC
Q 001310 803 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 875 (1103)
Q Consensus 803 ~~v~~l~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~ 875 (1103)
.....++++| ++..|.++. .+.|+.+|..++.... +.........++|++ ++++|+++.. ++ .+.+.+. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3567899998 455555554 4789999998765443 333556788999999 7875555554 22 3444443 3
Q ss_pred ceeE--EEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE
Q 001310 876 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1103)
Q Consensus 876 ~~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 952 (1103)
+... ..+.. ......++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3221 22221 23356788999 77777776678899999998765322 1222111 2467999999999766
Q ss_pred EE--eCCeEEEEECCC--ceE--EEEeeC--C---C---------CcCeE-EEEEc--------cCCCEEEEEecCCcEE
Q 001310 953 LV--HETHLAIYEAEE--LTC--LKQWFP--I---S---------SVPIS-QATFS--------CDCRMVFTSFVDGTLS 1003 (1103)
Q Consensus 953 ~~--~d~~v~iwd~~~--~~~--~~~~~~--~---h---------~~~v~-~l~fs--------~dg~~l~t~~~dg~v~ 1003 (1103)
++ ..+.|..++.+. +.. +..+.. + . -.... .++.. ++|.++++=...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 64 567899987653 322 111111 0 0 01122 44443 3455555555667888
Q ss_pred EEeCCCceeEEeeccc--cccC--CC-CCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1004 IHEASNLEVQCRILST--AYLR--PT-TSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1004 vWd~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
.++ .+|......... .+.. ++ .. ....--.+..++++|+++.++++-...+.|+.+++
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~---------~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLR---------QEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETT---------TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCch---------hhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 888 456544333210 0000 00 00 00001246788999865777777777778888776
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.0019 Score=69.35 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=139.4
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-eCCCeEEEEEecCC---Cccc
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 432 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~~---~~~~ 432 (1103)
..|+..|+.+++.... . ..-..+..++|++++..|..+ ...+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 5688889887654321 1 123567899999976666555 45688999998762 2111
Q ss_pred cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-CeE
Q 001310 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1103)
Q Consensus 433 ~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 511 (1103)
. .+.........+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222234678999876654 4555566789999997654433333334456788888653 33344444333 688
Q ss_pred EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC
Q 001310 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1103)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1103)
...+++...........-.....+++++++..|+.+-. ....|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88887654443333334456789999998888877643 255799999874333 3332211012345677774 344
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44455567788888887776555553
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.20 E-value=0.0002 Score=87.21 Aligned_cols=202 Identities=6% Similarity=-0.027 Sum_probs=114.5
Q ss_pred cCCCc-cEEEEEEC-CCCCEEEEEeC-C----CeEEEEEecCC-CccccceEeccccccEEEEEEecCCCceEEEEEcCC
Q 001310 393 RDPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 464 (1103)
Q Consensus 393 ~~h~~-~V~~~~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d 464 (1103)
.+|.. .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+. .....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEEC
Confidence 34554 78899999 99999997643 2 25999999998 63321 111 12457899999985 4433333
Q ss_pred -----CceEEEeCCCCcee--EEeec-CCCceEEEEeeecCCccEEEEEEC---CCeEEEEEcCCCC-ee--EEec-CCC
Q 001310 465 -----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDYD-APG 529 (1103)
Q Consensus 465 -----~~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~-~~~ 529 (1103)
..|+++++.++... ..+.. .......+.+ ++||++|+..+. ...|.++|+.++. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 25888898877532 33332 2233445555 567777776553 3357888887753 22 2222 223
Q ss_pred ccEEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCc--EEE
Q 001310 530 LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKI 604 (1103)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~--i~i 604 (1103)
....++.|+ +|..|+..+... .+...|+.+|+.++ +....+..+. ....+..+.+. ++.| ++...++. |++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 344444443 366666555432 34667888998753 2222022222 01245555554 4444 45666775 455
Q ss_pred EEC
Q 001310 605 WDM 607 (1103)
Q Consensus 605 wd~ 607 (1103)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 565
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.15 E-value=0.00066 Score=76.24 Aligned_cols=253 Identities=11% Similarity=0.017 Sum_probs=144.8
Q ss_pred CCeeEEEEecC--CCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC---C-eEEEEEcCC
Q 001310 803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARS 875 (1103)
Q Consensus 803 ~~v~~l~~s~d--~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~ 875 (1103)
.....++++|+ +..|..+. .+.|+.+|..+++.... .........+++++ +++++++.... . .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence 34678999985 34444443 48899999987766543 33556789999999 77744443321 1 233333222
Q ss_pred cee-EEEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310 876 SEV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1103)
Q Consensus 876 ~~~-~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 953 (1103)
+.. ...+. .-.....++++| +|.++++-..++.|+.+|..++..... ...... . .....++|+|+|++|.+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEE
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEE
Confidence 111 01121 223356688999 777776666778899999987664221 111111 1 13457999999997766
Q ss_pred E--eCCeEEEEECC--CceEE--EEeeC--C------------CCcCeEEEEE---------ccCCCEEEEEecCCcEEE
Q 001310 954 V--HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus 954 ~--~d~~v~iwd~~--~~~~~--~~~~~--~------------h~~~v~~l~f---------s~dg~~l~t~~~dg~v~v 1004 (1103)
+ ..+.|+.++.+ ++... ..+.. + .-.....+++ .++|.++++-...+.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 5 56789998865 33211 11111 0 0123567899 677777776667788999
Q ss_pred EeCCCceeEEeecccccc-CCCCCCCceeeEeeccC-CceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 1005 HEASNLEVQCRILSTAYL-RPTTSHDKILCFCYCSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 1005 Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
++. +|....... .... ..+... .. .... .--++..++++|.++.++++-...+.|+.+++
T Consensus 370 ~~~-~G~v~t~~G-~g~~~~~G~~d-G~----~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 370 LTP-EGRVTTYAG-RGNSREWGYVD-GE----LRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp ECT-TSEEEEEEC-CCTTCSSCCBC-EE----TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECC-CCCEEEEEe-CCCCCccccCC-Cc----cccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 985 565432222 1100 000000 00 0000 11236788888655888877777788888876
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.11 E-value=0.0064 Score=65.46 Aligned_cols=280 Identities=11% Similarity=0.037 Sum_probs=146.9
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 414 (1103)
..+.+|.|.+++. ++++|. ++.| +.....|+.=..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-E
Confidence 4799999988887 566654 4544 333344431110000 0112345788999986 44444 4
Q ss_pred eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEEEe
Q 001310 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCP 493 (1103)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~ 493 (1103)
+..+.|.. ....|+..........+...+..+.+.+++. +++.+ .++.|..- .+.|+.-... ......+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 45664432 3334443332111112334577888877776 45554 45554332 2334333222 344567788877
Q ss_pred eecCCccEEEEEECCCeE-EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEe
Q 001310 494 HAKENIHFIFSISVDGKI-KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1103)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1103)
.+ ++.+++.+ .+|.+ +-+|-....-..........+..+++.++++.++.+. .+.+++.+...++.-..+.
T Consensus 171 ~~--~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SP--SGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CT--TSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred cC--CCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 54 55566555 44444 3333211111111223345788899999988776553 3346665423233332222
Q ss_pred cc-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310 573 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 573 ~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
.. ......+..+.+.+++..+++ +.+|.| .+..+.|+.-..+... .....+..+.|.+++ .+++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 11 101235888999887665554 456776 4555556555544422 112347889898655 466667788776654
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.0013 Score=73.96 Aligned_cols=243 Identities=6% Similarity=-0.011 Sum_probs=136.5
Q ss_pred cEEEEEEec-CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310 736 KISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1103)
Q Consensus 736 ~i~~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 814 (1103)
....++++| ++..|.++...+.|+.++...... .... ........++++++|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v----------------------~~~~-----~~~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV----------------------STVY-----SGLSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE----------------------EEEE-----CCCSCEEEEEECTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE----------------------EEEe-----cCCCCcceEEEeCCC
Confidence 345788997 455566665556666666443211 1110 133457889999999
Q ss_pred CEEEEEcC--C----eEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-C
Q 001310 815 AYLFSASG--G----VISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-H 885 (1103)
Q Consensus 815 ~~l~~~~d--g----~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h 885 (1103)
++|.++.. + .+..++. .+... ..+. .......++++|+++.++++-..++.|+.++..++........ .
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~ 268 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD 268 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC
Confidence 96666642 2 2333443 33222 2222 1234567889996666666666788999999987664222221 2
Q ss_pred CCCEEEEEEccCCCE-EEEEeCCCeEEEEEcCC--CceeeeeeeecCCCcccC---------CCCce-EEEEc-------
Q 001310 886 SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTL---------APSET-HIQFH------- 945 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~-l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~---------~~~v~-~l~fs------- 945 (1103)
......++|+|+|++ +++-...+.|..++.+. ++......+....+.... -.... .++..
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~ 348 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS 348 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence 234678999999995 45555678899988764 222111111111010000 01233 45553
Q ss_pred -CCCCEEEE-EeCCeEEEEECCCceEEEEeeC------C--C--------CcCeEEEEEccC-CCEEEEEecCCcEEEEe
Q 001310 946 -KDQTRFLL-VHETHLAIYEAEELTCLKQWFP------I--S--------SVPISQATFSCD-CRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus 946 -~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~------~--h--------~~~v~~l~fs~d-g~~l~t~~~dg~v~vWd 1006 (1103)
++|.+.++ ..++.|+.++ .+|......-. + . -.....++++++ +.++++-.....|+.++
T Consensus 349 D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 349 SDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp SCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 34565555 3667899988 45654332211 1 0 124688999995 55555544567788877
Q ss_pred CC
Q 001310 1007 AS 1008 (1103)
Q Consensus 1007 ~~ 1008 (1103)
++
T Consensus 428 ~e 429 (430)
T 3tc9_A 428 YE 429 (430)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.03 E-value=0.0074 Score=64.45 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=146.5
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-EEeecCCCce
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 488 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v 488 (1103)
+|+.+ ....|+..++.+..... . .+........+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~-~-~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENA-T-IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCC-E-EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEE-ccCeEEEEECCCCceEE-E-EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34443 34568999998753111 1 12223345778999986664 4555666788999998766422 2222223345
Q ss_pred EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1103)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1103)
..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+.+... ....|+..++......
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRF 158 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSCE
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCeE
Confidence 66777543 44566666677899999988655444444445567899999977777665421 2456888887643322
Q ss_pred EEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1103)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 647 (1103)
...... -...+.+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 159 ~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 159 IIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 222221 24678999999877777654 567899999875433333321 123346777753 44555555678898
Q ss_pred EEEcCCCCeeEecc
Q 001310 648 ILETPESNSVDAAG 661 (1103)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1103)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 89887776555443
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.01 E-value=0.0098 Score=65.96 Aligned_cols=234 Identities=9% Similarity=-0.071 Sum_probs=143.6
Q ss_pred CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCcc-ccc
Q 001310 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDA-RQQ 434 (1103)
Q Consensus 357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~-~~~ 434 (1103)
..|+..++....... +...-..+..++|++.+..|..+. ..+.|..+++.+.... ...
T Consensus 92 ~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~ 151 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 151 (400)
T ss_dssp TEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE
T ss_pred ceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce
Confidence 678888887654332 112345788999999766666554 5678999988763211 111
Q ss_pred eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEE
Q 001310 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKA 513 (1103)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~i 513 (1103)
..+.........+++.+.+.. +.++-...+.|.+.++........+.........+++.+. ++.++++-.. .+.|..
T Consensus 152 ~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 152 TVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEE
T ss_pred EEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEE
Confidence 122224456788999985554 4555666788999998766554444444456788888654 3334444323 477888
Q ss_pred EEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE
Q 001310 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1103)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1103)
.+++...........-.....+++++++..|+.+-. +...|..+|+............. .......+++. .+..+
T Consensus 230 ~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~-~~~ly 304 (400)
T 3p5b_L 230 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF-EDKVF 304 (400)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECSS-TTSSEEEEEEE-TTEEE
T ss_pred EeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCCC-CCCCCEEEEEe-CCEEE
Confidence 888765554444444457789999998888887743 25679999986544333333211 11345566663 33344
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEc
Q 001310 594 LAAGDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 594 ~~~~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
++-...+.|..+|..+|+.+..+.
T Consensus 305 wtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCSEEEEESSSCCCCEEEE
T ss_pred EecCCCCeEEEEEcCCCCceEEEe
Confidence 455567788888877777666654
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.96 E-value=0.009 Score=63.76 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=141.9
Q ss_pred CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-eCCCeEEEEEecCCCccccc
Q 001310 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 434 (1103)
Q Consensus 356 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 434 (1103)
...|+..|+.+........ . .....+.+++|.+.+..|..+ ...+.|..+++.++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 4678889987664211100 1 112356789999865555544 4567899999887632111
Q ss_pred eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE--CCCeEE
Q 001310 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 512 (1103)
Q Consensus 435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~ 512 (1103)
.+.........+++.+.+.. +.++-...+.|.++++........+.........+++.+.. + .|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~-g-~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG-T-EEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC-C-EEEEEecCCCCEEE
Confidence 12222235668899876654 45555667889999976544333333445567888887542 3 444444 357788
Q ss_pred EEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE
Q 001310 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1103)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1103)
..+++...........-.....+++++++..|+.+-. ....|..+|+..........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887754444333333446789999998888877643 35679999986433322232222 4566777753 334
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310 593 ILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (1103)
+++-...+.|..++..+|+....+..
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEecCCCeEEEEECCCCCceEEEeC
Confidence 44555678898999887776666543
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.94 E-value=0.0031 Score=66.38 Aligned_cols=195 Identities=11% Similarity=0.154 Sum_probs=125.4
Q ss_pred CCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC---CCC---EEEEEe-C--CCeEEEEEcC--CceeEEE
Q 001310 814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISK 881 (1103)
Q Consensus 814 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~-~--dg~v~iwd~~--~~~~~~~ 881 (1103)
..+++... .+.+.+||+ +|+.++.+.. +.+..+..-|. +++ ++++.. . +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34443333 578999999 8999988853 56666666551 122 233333 3 5799999774 443 444
Q ss_pred ecc------CC-CCEEEEEE--ccC-CC-EEEEEeCCCeEEEEEcC---CCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 882 l~~------h~-~~V~~l~~--s~d-g~-~l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
+.. .. ..+..+++ +|. ++ ++++...+|.+..|++. .+... .+.++.+.-. +.+..++..+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcCC
Confidence 421 11 45677888 774 44 67778889999999994 33222 2233332211 25889999999
Q ss_pred CCEEEEE-eCCeEEEEECC-----CceEEEEeeCCC-CcCeEEEEE--ccCCC-EEEEEe-cCCcEEEEeCC-CceeEEe
Q 001310 948 QTRFLLV-HETHLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1103)
Q Consensus 948 g~~l~~~-~d~~v~iwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~dg~v~vWd~~-~~~~~~~ 1015 (1103)
...|.++ .+..|..|+.+ +++.+..+-.++ ...+-.|++ .++++ +|++++ .+.++.|||.. +.+.+.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888887 44456666754 455665533344 346778887 56666 677666 56799999997 7888888
Q ss_pred ec
Q 001310 1016 IL 1017 (1103)
Q Consensus 1016 ~~ 1017 (1103)
|.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.0083 Score=72.20 Aligned_cols=237 Identities=10% Similarity=-0.028 Sum_probs=146.3
Q ss_pred EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC----ceeEEeecCC
Q 001310 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1103)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 485 (1103)
+|+.+ ....|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 3445777777765422 23334556789999986664 4555566788999998753 2233333344
Q ss_pred CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1103)
.....|++.+. .+.+.++-...+.|.+.+++.................|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 55667887643 33566666778899999998666555544445568899999987777665421 1256888888654
Q ss_pred eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001310 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 643 (1103)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d 643 (1103)
.....+...- .....|++++.+..|+.+. ..+.|...++........+...........+++. +..|+.+ ...
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4433333322 5788999998877777764 5578999998765554444433222333456654 3344444 456
Q ss_pred CeEEEEEcCCCCeeEec
Q 001310 644 NRIKILETPESNSVDAA 660 (1103)
Q Consensus 644 g~i~iw~~~~~~~~~~~ 660 (1103)
+.|...+..+++.+..+
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 77888887777555544
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.0033 Score=70.53 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=135.2
Q ss_pred cCceEEEecCC---CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310 335 SSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1103)
Q Consensus 335 ~~V~~v~~spd---g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 411 (1103)
.....++|+|+ |. |.++-.. +.|+.+|..+++... +.+.......++|+++|+++
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~ly 196 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMV 196 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEE
T ss_pred CCCceEEEccccCCCE-EEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEE
Confidence 35789999995 54 4444333 889999988776543 12234568899999999944
Q ss_pred EEEeCC---Ce-EEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCceeEEe-ec-C
Q 001310 412 GVAYSK---HI-VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-H 484 (1103)
Q Consensus 412 as~~~d---~~-i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-~ 484 (1103)
++.... .. +...+...+. .. ...+. .......+++.| +|. +.++-..++.|+.+|..++.....+ .. .
T Consensus 197 Vad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp EEECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred EEcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 444321 22 3333333221 11 01111 223456788999 665 5555566788999998878763332 21 1
Q ss_pred CCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCe----eEEecCC---------------CccEEEEEE-------
Q 001310 485 GAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY------- 537 (1103)
Q Consensus 485 ~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------------~~~i~~~~~------- 537 (1103)
...-..+++++ ++. +.++-...+.|..++++.... ...+... -.....+++
T Consensus 272 ~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 272 KGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp CSSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 22234577754 556 455555678899988763211 1111111 113567888
Q ss_pred --ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc---------------cCCceEEEEEc-CCCCEEEEEeCC
Q 001310 538 --SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDD 599 (1103)
Q Consensus 538 --s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~~~d 599 (1103)
.++|.+.++-. +...|+.++. +|.. ..+.+... .-.....++++ +++..+++=..+
T Consensus 350 ~dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 423 (433)
T 4hw6_A 350 GEEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN 423 (433)
T ss_dssp TSSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence 66666555533 2556888885 5643 33333210 11346778888 455544444456
Q ss_pred CcEEEEECC
Q 001310 600 HVIKIWDMN 608 (1103)
Q Consensus 600 g~i~iwd~~ 608 (1103)
+.|+.++++
T Consensus 424 ~rIr~i~~e 432 (433)
T 4hw6_A 424 HRVRKIAPE 432 (433)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEecC
Confidence 677776653
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.80 E-value=0.044 Score=56.36 Aligned_cols=234 Identities=12% Similarity=0.085 Sum_probs=143.9
Q ss_pred EecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeE
Q 001310 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1103)
Q Consensus 341 ~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 420 (1103)
-.+|..+ ++|.=. ..++.|+|+++.+.++.+.+ ...|..-.|-.+. .|+-.+ +..|
T Consensus 73 IMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~taV 128 (365)
T 2xzh_A 73 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNAV 128 (365)
T ss_dssp EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SSEE
T ss_pred eeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CCcE
Confidence 3478777 566544 57899999999988876442 3578888887554 444443 4569
Q ss_pred EEEEecCCCccccceEecccc----ccEEEEEEecCCCceEEEEEc------CCCceEEEeCCCCceeEEeecCCCceEE
Q 001310 421 QLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1103)
Q Consensus 421 ~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1103)
+-|++.+... +...+..|. ..|..-..+++.+++ +++|= -.|.+.+|..+.+ .-+.++||.+....
T Consensus 129 yHWs~~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 129 YHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 204 (365)
T ss_dssp EEEESSTTCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEE
T ss_pred EEEcccCCCC--CceeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEE
Confidence 9999986432 222344443 357777788888863 33332 2367889985544 45678888776665
Q ss_pred EEeeecCCcc-EEEEEEC---CCeEEEEEcCCC---C-----eeEEecC----CCccEEEEEEccCCCEEEEEecCCCCc
Q 001310 491 LCPHAKENIH-FIFSISV---DGKIKAWLYDSL---G-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 491 ~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~---~-----~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
+.+...+... +++.+.. .+.+++-++... . ....+.. ...-..++..|+.-..++..+. -
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK----~ 280 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 280 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----C
Confidence 5543222222 3333332 257899988543 1 1111111 1223456777887777777764 6
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
|.|++||+.++.++..-+-.. ..|...+-..+..-+++....|.|.--.++.
T Consensus 281 G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 789999999999887665544 5565555544545566666666665554444
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=0.0087 Score=67.03 Aligned_cols=252 Identities=7% Similarity=0.010 Sum_probs=139.2
Q ss_pred cEEEEEEec-CCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE---
Q 001310 736 KISRLTYNN-GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL--- 810 (1103)
Q Consensus 736 ~i~~~~~s~-~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--- 810 (1103)
....++|+| +...|+++.. .+.|++.|+..... ...... ..........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v----------------------~~l~~~-~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML----------------------SSPLNI-NTIPTNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE----------------------EEEECC-TTSSCSBEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE----------------------EEEEcc-CccccCCCcEEEEeec
Confidence 456889998 3555555554 35566665443321 111111 0012346789999
Q ss_pred ----ecCCCEEEEEcC-C-------eEEEEEcCC-ceee-----EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310 811 ----SKNDAYLFSASG-G-------VISLYIVMT-FKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1103)
Q Consensus 811 ----s~d~~~l~~~~d-g-------~i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1103)
+++|+.|.++.+ + .|.+++... +... +.+. .......++++|+++.++++-..++.|..+|
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 999997776653 2 255665443 2221 1221 1124457889996666777777888999999
Q ss_pred cC-------Ccee-----------EEEe-c-cCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcCC--Cceeeeeeeec-
Q 001310 873 AR-------SSEV-----------ISKL-E-GHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDVDG--WGIQTCRSLQT- 928 (1103)
Q Consensus 873 ~~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~dg~~l-~s~s~dg~I~iwd~~~--~~~~~~~~~~~- 928 (1103)
+. ++.. ...+ . +.......|+|+|+|++| ++-.....|+.++.+. +.......+.-
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 97 5543 1222 1 223446789999999954 4445667888866653 22111111111
Q ss_pred --CCCccc------CCCCce-EEEEc-------CCCCEEEE-EeCCeEEEEECCCceEEEEeeC-------------CC-
Q 001310 929 --PDGVMT------LAPSET-HIQFH-------KDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------IS- 977 (1103)
Q Consensus 929 --~~~~~~------~~~~v~-~l~fs-------~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~-------------~h- 977 (1103)
..+... .-.... .++.. ++|.+.++ ..++.|+.++ .+|.. .++.. +.
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCC
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccC
Confidence 111110 001234 45554 45665555 4778899998 45643 23221 11
Q ss_pred ---------CcCeEEEEEccC-CCEEEEEecCCcEEEEeCCCceeE
Q 001310 978 ---------SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus 978 ---------~~~v~~l~fs~d-g~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
-.....|+++++ |.++++=.....||.++++.....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 123567888887 665555556678888888765443
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.77 E-value=0.022 Score=68.54 Aligned_cols=215 Identities=10% Similarity=-0.051 Sum_probs=131.6
Q ss_pred CCccEEEEEECCCCCEEEEE-eCCCeEEEEEecCCCcc-ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310 395 PGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1103)
Q Consensus 395 h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1103)
....+..++|.+.+..|..+ ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999865555544 45678998988753210 111123324455678999988865 4556667789999997
Q ss_pred CCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
........+.........|++.+. .+.++++-... +.|.+.+++...........-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 755544444444556888998654 23344443333 77888888766555555544467889999988888877643
Q ss_pred CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEc
Q 001310 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID 617 (1103)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 617 (1103)
+...|...++........+.... .......+++. +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 25579999986554444433311 11234566653 3355544 456778888877776665553
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0071 Score=67.74 Aligned_cols=250 Identities=11% Similarity=0.122 Sum_probs=139.9
Q ss_pred cEEEEEECC-CCCEEEEEeC-CCeEEEEEecCCCccccceEec-cccccEEEEEE-------ecCCCceEEEEEcCCC--
Q 001310 398 SVNRVVWSP-DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 465 (1103)
Q Consensus 398 ~V~~~~~sp-dg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~-------s~d~~~~~l~s~~~d~-- 465 (1103)
....|+|+| +...|.++.. .+.|++.|.+++.... +.... +.......++| +++|+. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 4555555543 4678888888764332 11110 12235889999 999984 44443332
Q ss_pred -----ceEEEeCCC-Ccee-----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-------CCCe------
Q 001310 466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 521 (1103)
Q Consensus 466 -----~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------ 521 (1103)
.|.+.+... |... ..+... .....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 2221 222211 12334566442 45666777788889999987 4443
Q ss_pred -----e-EEe-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCeeE--EEEecc---c---------ccC
Q 001310 522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGL---Q---------LQH 578 (1103)
Q Consensus 522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~~~~---~---------~~~ 578 (1103)
. ..+ .........++|+|+|+.|+.+-. ....|+.++. .++... ..+.+. . ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 112 222344678999999997666532 2556887554 444321 233322 0 011
Q ss_pred CceE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC----------------------CCCCCceE
Q 001310 579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 628 (1103)
Q Consensus 579 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 628 (1103)
.... .++.. +++..+++=...+.|+.++ .+|. +.++.+.+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4566666666788999998 4554 43443211 01223578
Q ss_pred EEecC-CCEEEEEECCCeEEEEEcCCCCee
Q 001310 629 CFNKN-GTLLAVIANENRIKILETPESNSV 657 (1103)
Q Consensus 629 ~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~ 657 (1103)
+++++ |.++++=..++.|+.++++.....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 99986 665555556788888888765433
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.69 E-value=0.00037 Score=83.59 Aligned_cols=205 Identities=9% Similarity=0.006 Sum_probs=125.2
Q ss_pred CCeeEEEEecCCCEEEEEc--CCeEEEEEcCC----ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001310 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1103)
..+..++|++.+..|..+. .+.|..+++.. ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3566789999877777765 57899999875 22222222222345678888635666666566789999998755
Q ss_pred eeEEEeccCCCCEEEEEEccCCCEEEEEeC-C-CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1103)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 954 (1103)
.....+.........|++.|++.+|..+.. . +.|...+++...... .+. ... .....|+|+|++..|.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~---~~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---ENI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC---SSC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe---CCC---CCccEEEEeccCCEEEEE
Confidence 433333323345678899997655554432 2 678777776532111 111 111 146789999987777665
Q ss_pred --eCCeEEEEECCCceEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310 955 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 955 --~d~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
..+.|..++++... ...+... ......+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 56789999987432 2222321 1233445666544 455555567899999999998876665
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.69 E-value=0.0066 Score=63.34 Aligned_cols=202 Identities=12% Similarity=0.090 Sum_probs=125.5
Q ss_pred CeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEE-ecC----CC--CCeeEEEE---cCCCCCEEEEEe--------
Q 001310 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGM-------- 863 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~-------- 863 (1103)
-..+++|.+....+..++ .++|..||...+..... +.. .. ..+..+.+ .| +++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 445788887555555554 79999999976544333 221 11 14578999 68 687877644
Q ss_pred -----CCCeEEEEEcC---CceeEEEec--cCC-----------CCEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCcee
Q 001310 864 -----DDSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ 921 (1103)
Q Consensus 864 -----~dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~s~d-g~I~iwd~~~~~~~ 921 (1103)
.+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26789999999 787665443 211 247899999999999999888 87776666653222
Q ss_pred eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceE--EEEeeCCC---CcCeEEE-EEccCCCE-E
Q 001310 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V 993 (1103)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l 993 (1103)
. ..+..+.... ......+++.|||+.|++. ..+.|..+|+.+... +..-..+. -.....+ .--.+|+. |
T Consensus 173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 1 1111111111 1247799999999998884 588999999885433 22110021 1223443 33357777 4
Q ss_pred EEEecCCcEEEEeCCC
Q 001310 994 FTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 994 ~t~~~dg~v~vWd~~~ 1009 (1103)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566666666554
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.69 E-value=0.011 Score=62.33 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=119.7
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeec--CCcc---EEE-EEEC--CCeEEEEEcCCCC-eeEEecC
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---FIF-SISV--DGKIKAWLYDSLG-ARVDYDA 527 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~l~-s~~~--dg~i~iwd~~~~~-~~~~~~~ 527 (1103)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+. -++. +++ +.-. +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666778999998 9999988864 55666655431 0122 223 3333 5789999875322 2223311
Q ss_pred ------CC-ccEEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC---C----CCeeEEEEecccccCCceEEEEEcCC
Q 001310 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE---S----EGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1103)
Q Consensus 528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~---~----~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1103)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ . +.+.++.+... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 774 44 3444432 456877777 2 34556666653 46888999999
Q ss_pred CCEEEEEeCCCcEEEEECC-----CCeeEEEEcCCCCCCCCceEEE--ecCCC-EEEEEE-CCCeEEEEEcC-CCCeeEe
Q 001310 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 659 (1103)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~g~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 659 (1103)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .++++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999998777777755 3455555533222225677877 45555 666666 56799999996 4444444
Q ss_pred c
Q 001310 660 A 660 (1103)
Q Consensus 660 ~ 660 (1103)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.00027 Score=84.68 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=135.6
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC----CceeEEeecCCCceEEE
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSL 491 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~ 491 (1103)
..+.|++.++.+.+.... ......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........+
T Consensus 384 ~~~~I~~id~~~~~~~~~----~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp CTTC-CEECTTSCCEECC----SCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred CccceEEEeCCCCcceee----eccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 345677888776543321 122235678999987763 344445567899999875 22222222122234556
Q ss_pred EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1103)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1103)
++.+. ++.++++-...+.|.+++++.......+.........++++|.+.+|+.+... ..+.|+.+++..... ..+
T Consensus 459 avD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l 534 (699)
T 1n7d_A 459 AVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSL 534 (699)
T ss_dssp ECCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEE
T ss_pred EEEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEE
Confidence 66533 34455565667889999887655444443333455778999977766654321 125687777653322 222
Q ss_pred ecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310 572 QGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1103)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~ 650 (1103)
.... ....+.++|+|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++
T Consensus 535 ~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 535 VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp SCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred EeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 2111 2456789999987666654 4667899999875443333332222233456677654 4555555678899999
Q ss_pred cCCCCeeEeccc
Q 001310 651 TPESNSVDAAGV 662 (1103)
Q Consensus 651 ~~~~~~~~~~~~ 662 (1103)
..+++.+..+..
T Consensus 612 ~~~G~~~~~i~~ 623 (699)
T 1n7d_A 612 RLTGSDVNLLAE 623 (699)
T ss_dssp TTTEEEEECCCT
T ss_pred ccCCCceEEeec
Confidence 887776665543
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.49 E-value=0.12 Score=55.47 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=143.9
Q ss_pred EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1103)
Q Consensus 340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 419 (1103)
.-.+|..+ ++|.=. ..++.|+|+++.+.++.+.+ ...|..-.|-.+ +.|+-. .+..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lV-T~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALV-TDNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEE-CSSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEE-cCCe
Confidence 34567776 555543 57899999999988876442 246667777644 445544 3556
Q ss_pred EEEEEecCCCccccceEecccc----ccEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEE
Q 001310 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1103)
Q Consensus 420 i~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1103)
|+-|++.+... +...+..|. ..|..-..+++.+++.|+.-+ -.|.+.+|..+.+ .-+.++||.+....
T Consensus 127 VyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 127 VYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (494)
T ss_dssp EEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEE
T ss_pred eEEecccCCCC--chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEE
Confidence 99999976432 222344443 357777788998863332221 2467889986554 45678888877766
Q ss_pred EEeeecCCc-cEEEEEECC---CeEEEEEcCCC---C-----eeEEecC----CCccEEEEEEccCCCEEEEEecCCCCc
Q 001310 491 LCPHAKENI-HFIFSISVD---GKIKAWLYDSL---G-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1103)
Q Consensus 491 ~~~~~~~~~-~~l~s~~~d---g~i~iwd~~~~---~-----~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1103)
+.+...... .+++.+... +.+++-++... . ....+.. ...-..++..|+.-..++..+. .
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----~ 279 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----C
Confidence 655322222 234444433 78999988653 1 1111111 1223457788887777777764 6
Q ss_pred eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
|.|++||+.++.++..-+-.. ..|...+-..+..-+++....|.|.--.++.
T Consensus 280 G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred ceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 789999999999877665444 5555555555555555555666555444443
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.41 E-value=0.16 Score=52.40 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=149.2
Q ss_pred EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccC
Q 001310 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1103)
+.-.+|..+.+|.-....++++|+++.+.+....- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+.+.++.|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 45568889999888888899999999998888764 35777777764 45666666 45799999975 3566677665
Q ss_pred C----CCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC-----C
Q 001310 886 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----T 949 (1103)
Q Consensus 886 ~----~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-----~ 949 (1103)
. ..|..-..+++.+|++..|- .|.+.+|.++.+. -+..+||.. .-..|-.+| .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCce
Confidence 3 46788888999999886553 3678899988743 344556532 112233333 2
Q ss_pred EEEEEeC----CeEEEEECCCc---e------EEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310 950 RFLLVHE----THLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus 950 ~l~~~~d----~~v~iwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
+++.+.. ++++|-++... . .+..+++. -.+-..++..|+.-..+..-+.-|.|.+||++||.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 3333322 58999998432 1 11112222 14444567778777778888899999999999999986
Q ss_pred eeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310 1015 RILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
+-+- .+..|+.. +.+.. ..-++.....|.|.--.+.
T Consensus 296 ~nrI-------------------S~d~iF~t--a~~~~-~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 296 MNRI-------------------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEC-------------------CSSCEEEE--EEEGG-GTEEEEEETTCEEEEEEEC
T ss_pred Eecc-------------------CCCceEEe--cccCC-CCcEEEEcCCCEEEEEEEC
Confidence 6651 23335532 22222 2335555688877766663
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.33 E-value=0.065 Score=58.04 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=109.1
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCce-eeEEec---CCCCCeeEEEEcCC---CCCEEEEEeC---C----CeE
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 868 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v 868 (1103)
.....++|.|||+++++-.+|.|.+++. +++ .+..+. ........++++|+ ++.+.++-.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4567899999999888777899998873 454 222221 12346889999993 2444443332 3 578
Q ss_pred EEEEcCCc-------ee-EEEecc-CCCCEEEEEEccCCCEEEEEeCC-------------CeEEEEEcCCCceee----
Q 001310 869 LIYNARSS-------EV-ISKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQT---- 922 (1103)
Q Consensus 869 ~iwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~dg~~l~s~s~d-------------g~I~iwd~~~~~~~~---- 922 (1103)
..|+.... +. +..+.. .......|+|.|||.++++.+.. |.|.-.+.+. +...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence 88887654 11 122221 11123679999999888875432 3454444432 1100
Q ss_pred --eeeeecCCCcccCCCCceEEEEcC-CCCEEEEE--eCC--eEEEEECCCce------------------EEEEeeCCC
Q 001310 923 --CRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS 977 (1103)
Q Consensus 923 --~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~--~d~--~v~iwd~~~~~------------------~~~~~~~~h 977 (1103)
..... .++. ....++|+| +|++.++- .+. .|.+.. .|. .+..+...
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE- 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence 00110 1111 356899999 67766662 222 244332 221 11111011
Q ss_pred CcCeEEEEEc-------cCCCEEEEEecCCcEEEEeCCC
Q 001310 978 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 978 ~~~v~~l~fs-------~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
......++|. .+|.++++.-..+.|...+++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 3457788883 5677776665667788888775
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.28 E-value=0.056 Score=58.63 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=63.4
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCce--eeEEec---CCCCCeeEEEEcCCC----CCEEEEEeCC-----CeE
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK--TILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STI 868 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~l~~s~~d----~~~lasg~~d-----g~v 868 (1103)
.....++|.|||+++++-..+.|.+++ +++ .+..+. ........++++| + +.+.++-... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 346789999999988777689999998 343 222222 1235678999999 5 4444433332 678
Q ss_pred EEEEcCCce-----e-EEEec---cCCCCEEEEEEccCCCEEEEEe
Q 001310 869 LIYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSG 905 (1103)
Q Consensus 869 ~iwd~~~~~-----~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s 905 (1103)
..|+...+. . +..+. +.......++|.|||.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 888877532 1 22233 1111235799999998777754
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.25 E-value=0.31 Score=52.40 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=150.0
Q ss_pred EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccC
Q 001310 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1103)
+.-.+|..+.+|.-...++.|+|+++...+....-. ..|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 556788888888888889999999999888887643 3566666654 34666555 56899999974 3566777665
Q ss_pred C----CCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC-----C
Q 001310 886 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----T 949 (1103)
Q Consensus 886 ~----~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-----~ 949 (1103)
. ..|..-..++|.+|++..|- .|.+.+|.++.+. -+..+||.. .-..|-.+| .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST 214 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCce
Confidence 3 46888888999999886542 4678899998744 344556532 112222232 2
Q ss_pred EEEEEe----CCeEEEEECCCc---------eEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310 950 RFLLVH----ETHLAIYEAEEL---------TCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus 950 ~l~~~~----d~~v~iwd~~~~---------~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
+++.+. .++++|-++... +.+..+++. -..-..++..|+.-..+..-+.-|.|.+||+++|..+.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 333342 268999998542 111111222 14445578888877788888899999999999999986
Q ss_pred eeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310 1015 RILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
+-+- .+..|+. -+.+.. ..-++.....|.|.--.+.+
T Consensus 295 ~nrI-------------------s~~~iF~--t~~~~~-~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 295 MNRI-------------------SGETIFV--TAPHEA-TAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEC-------------------CSSCEEE--EEEETT-TTEEEEEETTCEEEEEEECT
T ss_pred eecc-------------------cCCceEE--ecccCC-CCcEEEEccCceEEEEEEcc
Confidence 6551 2334553 233333 23455556888877766643
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.23 E-value=0.013 Score=61.03 Aligned_cols=167 Identities=10% Similarity=0.115 Sum_probs=109.2
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-ecc----CC--CCEEEEEE---ccCCCEEEEEe----
Q 001310 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEG----HS--KRVTGLVF---SDALNILVSSG---- 905 (1103)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~----h~--~~V~~l~~---s~dg~~l~s~s---- 905 (1103)
......--+++|.+.+++++++.-..|+|..|+...+..... +.+ .. ..+..|.| .|+++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 334445567899884565666555899999999886643333 332 11 13578999 68888887644
Q ss_pred ---------CCCeEEEEEcC---CCceeeeeeeecCC-C------cccCCCCceEEEEcCCCCEEEE-EeC-CeEEEEEC
Q 001310 906 ---------GDAQIFVWDVD---GWGIQTCRSLQTPD-G------VMTLAPSETHIQFHKDQTRFLL-VHE-THLAIYEA 964 (1103)
Q Consensus 906 ---------~dg~I~iwd~~---~~~~~~~~~~~~~~-~------~~~~~~~v~~l~fs~dg~~l~~-~~d-~~v~iwd~ 964 (1103)
.+..|..+|+. +++......+.... + ... .....++..++|+.-++ +.. +.|..++.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26779999999 66654432222111 0 000 13678999999998887 456 77777776
Q ss_pred CCceEEEEeeCC-----CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 965 EELTCLKQWFPI-----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 965 ~~~~~~~~~~~~-----h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
+. +.+..+... .....+.|++.|||+.|++....|.+..+|+.+
T Consensus 167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 63 333332211 123467999999999999887799999999884
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.22 E-value=0.016 Score=62.14 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=82.7
Q ss_pred EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCC----CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-----
Q 001310 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----- 877 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----- 877 (1103)
-...+.+|..++.+.++.||.-++......+.+... ...|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345677899999999999999998855445555443 23688999999 899999886 5579998887332
Q ss_pred -------eEEEecc------CCCCEEEEEEccC---CCEEEEEeCCCeEEEEEcCCC
Q 001310 878 -------VISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 918 (1103)
Q Consensus 878 -------~~~~l~~------h~~~V~~l~~s~d---g~~l~s~s~dg~I~iwd~~~~ 918 (1103)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 0112221 2567999999995 468999999999999999973
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.12 Score=55.41 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=120.9
Q ss_pred CCeeEEEEecCCCEEEEE-------------cCCeEEEEEcCC--cee-eEEecC-----CCCCeeEEEEcCC-CCC--E
Q 001310 803 EAVPCFALSKNDAYLFSA-------------SGGVISLYIVMT--FKT-ILTIMP-----PSPTATSLAFNPH-DNN--V 858 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~-------------~dg~i~iwd~~~--~~~-~~~~~~-----~~~~i~~l~~s~~-d~~--~ 858 (1103)
.....+++.|+|..++++ .+|.|.++|..+ .+. ...+.+ ..-....+.+.++ ++. +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 355678889988777776 368899999873 221 112222 1235566776552 232 4
Q ss_pred EEEEeC--CCeEEEEEcCCc----eeEEEeccC-CCCEEEEEEccCCCEEEEEeC---C------------CeEEEEEcC
Q 001310 859 IAIGMD--DSTILIYNARSS----EVISKLEGH-SKRVTGLVFSDALNILVSSGG---D------------AQIFVWDVD 916 (1103)
Q Consensus 859 lasg~~--dg~v~iwd~~~~----~~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~---d------------g~I~iwd~~ 916 (1103)
+++-.. +.+|.+|++..+ ..+..+.+. -...+.+++.++|.+.++... | ..=.+|.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 467888877653 233444442 245789999999998887651 1 122344444
Q ss_pred CCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCC-ceEEE-EeeCCCCcCeEEEEEcc-CCC
Q 001310 917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEE-LTCLK-QWFPISSVPISQATFSC-DCR 991 (1103)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~-~~~~~-~~~~~h~~~v~~l~fs~-dg~ 991 (1103)
.++... ...... ....++||||++.|.++ ..+.|+.|+++. ++... ..+ ...+....+++.+ +|.
T Consensus 210 ~~~~~~--~~~~l~-------~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 210 PNDVRV--VAEGFD-------FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD 279 (355)
T ss_dssp TTCCEE--EEEEES-------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred CCeEEE--eecCCc-------ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence 433211 111111 35789999999988885 567899999863 43221 112 1245678899999 598
Q ss_pred EEEEEecC-CcEEEEeCC--CceeEEeec
Q 001310 992 MVFTSFVD-GTLSIHEAS--NLEVQCRIL 1017 (1103)
Q Consensus 992 ~l~t~~~d-g~v~vWd~~--~~~~~~~~~ 1017 (1103)
+.+++..+ +.|..|+-+ .+..+.++.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 87766544 345555544 355666665
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.17 E-value=0.21 Score=54.05 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=117.6
Q ss_pred CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC---CCE
Q 001310 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1103)
Q Consensus 334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~ 410 (1103)
-...+.|+|.|||+ ++++ ..++.|.++| .+|+ .....+ . +..........|+|+|| +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASF------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEEC------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeecc------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 34789999999997 5555 4559999987 4454 111000 0 11223456889999998 555
Q ss_pred EEEEeC----C----CeEEEEEecCCC-cc---ccc-eEec-cccccEEEEEEecCCCceEEEEEcCC------------
Q 001310 411 LGVAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGDD------------ 464 (1103)
Q Consensus 411 las~~~----d----~~i~iwd~~~~~-~~---~~~-~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d------------ 464 (1103)
|.++.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+..
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554433 3 567788876541 11 100 0111 1111246799999997 45543321
Q ss_pred -CceEEEeCCCCc----------eeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCC----------
Q 001310 465 -KTIKVWDAVTGS----------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG---------- 520 (1103)
Q Consensus 465 -~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~---------- 520 (1103)
+.|.-.+.. |+ .+.. .++.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 344444433 22 1211 23332 345677542 344444432221 12222 1111
Q ss_pred --------eeEEecCCCccEEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eeE--EEEecccccCCceE
Q 001310 521 --------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVS 582 (1103)
Q Consensus 521 --------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~ 582 (1103)
....+.........++|. .+|+++++... .+.|...++... +.. ..+... ....+.
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~ 315 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLR 315 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCee
Confidence 112221223356778883 56766655432 345777777643 222 122211 125688
Q ss_pred EEEEcCCCCEEEEEe
Q 001310 583 VVHFDTAKDQILAAG 597 (1103)
Q Consensus 583 ~~~~~~~~~~l~~~~ 597 (1103)
.+++.|||...++..
T Consensus 316 ~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 316 DVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEe
Confidence 999999986555543
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.16 E-value=0.049 Score=57.71 Aligned_cols=233 Identities=12% Similarity=0.084 Sum_probs=123.5
Q ss_pred CCCEEEEEc-C------CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCce-
Q 001310 813 NDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE- 877 (1103)
Q Consensus 813 d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~- 877 (1103)
++.+++.|+ . ..+.+||..+.+-.. .+....... +++. . ++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445555555 1 358899988765322 222111122 2222 2 56788888765 368999988765
Q ss_pred ----eEEEeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310 878 ----VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 878 ----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 948 (1103)
.+..+......-..+.+ ++++++.|+.++ .+.++|+.+.+-.....+.... . ....+. -++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~----~~~~~~--~~~ 160 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR--E----GAGLVV--ASG 160 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC--B----SCEEEE--ETT
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc--c----cceEEE--ECC
Confidence 22222221122222222 677888877543 5889999887654433222211 1 112222 267
Q ss_pred CEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEeec
Q 001310 949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 949 ~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~~~ 1017 (1103)
++++.| .+ ..+.+||..+.+-...-... .......+..-+++.++.|+.+ ..+.+||+.+.+....-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~- 238 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT- 238 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC-
Confidence 766664 32 46999999887654331111 1111112223467777878764 46899999988765321
Q ss_pred cccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecC-----CcEEEEccCCCCCCCccCCc
Q 001310 1018 STAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPP 1083 (1103)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~vw~~~~~~~~w~~~~~ 1083 (1103)
..+... .+|+ .+.. ++.+++.|+.+ ..|.+||+ ...+|...++
T Consensus 239 ---~~p~~r---------~~~~------~~~~---~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~ 286 (301)
T 2vpj_A 239 ---SMTTPR---------CYVG------ATVL---RGRLYAIAGYDGNSLLSSIECYDP--IIDSWEVVTS 286 (301)
T ss_dssp ---CCSSCC---------BSCE------EEEE---TTEEEEECCBCSSSBEEEEEEEET--TTTEEEEEEE
T ss_pred ---CCCCcc---------ccee------EEEE---CCEEEEEcCcCCCcccccEEEEcC--CCCeEEEcCC
Confidence 112111 0121 1122 26777777765 35677777 3456876543
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.14 E-value=0.13 Score=55.81 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=62.0
Q ss_pred cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC---CCEE
Q 001310 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL 411 (1103)
Q Consensus 335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~l 411 (1103)
...+.++|.|||+ ++++ ..++.|.+++ +++......+ . +..........++|+|| +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~------------~--v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAEL------------S--VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEEC------------C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecc------------e--EeecCCCCceeEEECCCCCCCCEE
Confidence 4678999999998 5555 4559999998 4432111000 0 12223457889999998 5555
Q ss_pred EEEeC-C-----CeEEEEEecCCCcc--ccc-eEec---cccccEEEEEEecCCCceEEEEE
Q 001310 412 GVAYS-K-----HIVQLYAYHGGSDA--RQQ-LEID---AHVGNVNDLAFSAPCKQISVITC 461 (1103)
Q Consensus 412 as~~~-d-----~~i~iwd~~~~~~~--~~~-~~l~---~h~~~v~~~~~s~d~~~~~l~s~ 461 (1103)
.++.. . +.|..|+...+..- +.. ..+. +.......++|.|||. +.++.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 55433 2 66888888754211 111 1122 1111236899999996 44443
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.11 E-value=0.073 Score=56.51 Aligned_cols=232 Identities=10% Similarity=0.012 Sum_probs=124.1
Q ss_pred CEEEEEc---CCeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC----CeEEEEEcCCceeE--EEec
Q 001310 815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVI--SKLE 883 (1103)
Q Consensus 815 ~~l~~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~~--~~l~ 883 (1103)
.+++.|+ ...+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+.+-. ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3445554 2568999998765322 22222222223333 56788888765 67899999886532 2222
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e-
Q 001310 884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 955 (1103)
Q Consensus 884 ~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~- 955 (1103)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+..... ....+ .-++++++.| .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~--~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC------SHGMV--EANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB------SCEEE--EETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc------eeEEE--EECCEEEEECCCC
Confidence 21111222222 67888888765 458899998876444322221111 11222 2366666664 2
Q ss_pred --------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEeecccccc
Q 001310 956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1103)
Q Consensus 956 --------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~~~~~~~~ 1022 (1103)
-..+.+||..+.+-...-... .......+..-++++++.|+.+ ..+.+||+.+.+....- ..
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS----PM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC----CC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC----CC
Confidence 345899999887654331111 1111112222367777777654 46899999988654221 11
Q ss_pred CCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecC-----CcEEEEccCCCCCCCccCCcc
Q 001310 1023 RPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1084 (1103)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~vw~~~~~~~~w~~~~~~ 1084 (1103)
+... .+|+. +.. ++.+++.|+.+ ..+.+||+ ...+|...++.
T Consensus 235 p~~r---------~~~~~------~~~---~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~ 281 (306)
T 3ii7_A 235 PWKG---------VTVKC------AAV---GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKV 281 (306)
T ss_dssp SCCB---------SCCEE------EEE---TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEE
T ss_pred CCCc---------cceeE------EEE---CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCc
Confidence 2111 01111 122 26788888854 45777777 45678765443
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.10 E-value=0.092 Score=56.91 Aligned_cols=235 Identities=10% Similarity=0.081 Sum_probs=124.2
Q ss_pred CeeEEEEecCCC-EEEEEcCCeEEEEEcCCceeeEE---e----cCCCCCeeEEEEcCC---CCCEEEEEeC-------C
Q 001310 804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPH---DNNVIAIGMD-------D 865 (1103)
Q Consensus 804 ~v~~l~~s~d~~-~l~~~~dg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~---d~~~lasg~~-------d 865 (1103)
....|+|.|||+ ++++-..|.|++++.. ++.... + .........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7777668999999854 332211 1 112345689999993 3444443222 2
Q ss_pred CeEEEEEcCCc--e--eEE----Eec-----cCCCCEEEEEEccCCCEEEEEeCC-------------CeEEEEEcCCCc
Q 001310 866 STILIYNARSS--E--VIS----KLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 919 (1103)
Q Consensus 866 g~v~iwd~~~~--~--~~~----~l~-----~h~~~V~~l~~s~dg~~l~s~s~d-------------g~I~iwd~~~~~ 919 (1103)
..|..|++..+ + ... .+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+. +
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG-~ 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG-E 174 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS-C
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC-C
Confidence 35666766532 1 111 111 132 3569999999777765442 4566666553 1
Q ss_pred eee-----------eeeeecCCCcccCCCCceEEEEcC-CCCEEEEE--eCCeEEEEECCCceE----------------
Q 001310 920 IQT-----------CRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTC---------------- 969 (1103)
Q Consensus 920 ~~~-----------~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~--~d~~v~iwd~~~~~~---------------- 969 (1103)
... ..... .++. ....++|.| +|++.++- .++.=.|.-+..+.-
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 100 00010 1111 267899999 66666652 222222222221111
Q ss_pred ---------------EEEeeCCCCcCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCC
Q 001310 970 ---------------LKQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1103)
Q Consensus 970 ---------------~~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~ 1027 (1103)
+.. . .+......++|.. +|.++++.-..+.|...+++.++...... +..
T Consensus 249 ~~~~~~~~~~~~~~P~~~-~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~---- 319 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFY-W-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT---- 319 (353)
T ss_dssp CTTCCBSSCTTSCCCSEE-E-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----
T ss_pred cCcccCCCCCCccCCeEE-e-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----
Confidence 000 1 1223566777763 46666666567777777777654432211 110
Q ss_pred CCceeeEeeccCCceeeEEEEECCCCCcEEEEEe-cCCcEEEEcc
Q 001310 1028 HDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1071 (1103)
Q Consensus 1028 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~-~dg~v~vw~~ 1071 (1103)
+.. -.+..+++.|+ |.+.++.. .+| +||.+
T Consensus 320 ---------~~~--~rp~~v~~~pd-G~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 320 ---------DRG--QRIRDVRTGPD-GYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp ---------GGC--CCEEEEEECTT-SCEEEEECSTTE--EEEEE
T ss_pred ---------CCC--CceeEEEECCC-CcEEEEEeCCCC--EEEEE
Confidence 001 13467888998 77666433 344 45555
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.05 E-value=0.13 Score=54.50 Aligned_cols=232 Identities=10% Similarity=0.051 Sum_probs=122.1
Q ss_pred CCCEEEEEc-C----CeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeE-
Q 001310 813 NDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVI- 879 (1103)
Q Consensus 813 d~~~l~~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~- 879 (1103)
++.+++.|+ + ..+.+||..+.+-... +......- +++.. ++++++.|+.++ .+.+||..+.+-.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 344555554 1 4588899887653222 22111111 22222 567888887653 6889998876532
Q ss_pred -EEeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310 880 -SKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1103)
Q Consensus 880 -~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 953 (1103)
..+......-..+. -++++++.|+.++ .+.+||+.+.+......+..... .. +++. -++++++.
T Consensus 92 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~-~~~~-~~~~iyv~ 161 (302)
T 2xn4_A 92 VANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS------SV-GVGV-VGGLLYAV 161 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB------SC-EEEE-ETTEEEEE
T ss_pred CCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc------Cc-eEEE-ECCEEEEE
Confidence 22221111122222 2678888888654 57788988866444322221111 11 2222 36666666
Q ss_pred E-e-------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEeecccc
Q 001310 954 V-H-------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus 954 ~-~-------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
| . -..+.+||..+.+-...-.......-.++ ..-++++++.|+.+ ..+.+||+.+.+....-.
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 4 2 23589999988765432111111111122 22367788888764 368999999886653211
Q ss_pred ccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-----cEEEEccCCCCCCCccCC
Q 001310 1021 YLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1082 (1103)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~vw~~~~~~~~w~~~~ 1082 (1103)
.+... .+|+ .+.. ++.+++.|+.++ .|.+||+. ..+|...+
T Consensus 238 -~~~~r---------~~~~------~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~ 283 (302)
T 2xn4_A 238 -MNMCR---------RNAG------VCAV---NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS 283 (302)
T ss_dssp -CSSCC---------BSCE------EEEE---TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred -CCCcc---------ccCe------EEEE---CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence 11111 0121 1122 267788887664 48888883 45687665
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.94 E-value=0.11 Score=54.77 Aligned_cols=188 Identities=7% Similarity=-0.005 Sum_probs=103.5
Q ss_pred cCCCEEEEEc-C-----CeEEEEEcCCce-----eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCC
Q 001310 812 KNDAYLFSAS-G-----GVISLYIVMTFK-----TILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARS 875 (1103)
Q Consensus 812 ~d~~~l~~~~-d-----g~i~iwd~~~~~-----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~ 875 (1103)
.++++++.|+ + ..+.+||..+.+ .+..+........++.+ ++++++.|+.++ .+.+||..+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCC
Confidence 4667777665 2 358999987654 33222222222222333 567888887543 688999887
Q ss_pred cee--EEEeccCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310 876 SEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 876 ~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 948 (1103)
.+- +..+......-.++. -++++++.|+.+ ..+.+||+.+.+-.....+.... . ....+. -++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~----~~~~~~--~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR--S----GAGVAL--LND 207 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC--B----SCEEEE--ETT
T ss_pred CeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc--c----cceEEE--ECC
Confidence 653 232222111112222 267888888765 35889999887644432221111 1 112222 256
Q ss_pred CEEEEE-e-----CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310 949 TRFLLV-H-----ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus 949 ~~l~~~-~-----d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
++++.| . ...+.+||..+.+-...-... .......+..-+++.++.|+.+ ..|.+||+++.+..
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC-CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666664 3 246999999987654331111 1111112223477788888765 45888999887654
No 320
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.83 E-value=0.00088 Score=53.41 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.7
Q ss_pred CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001310 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1103)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~ 35 (1103)
|+...+||-+||..||+|.||..||-+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999983
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.79 E-value=0.73 Score=49.01 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=57.8
Q ss_pred CeeEEEEecCCCEEEEEc--CCeEEEEEcCCcee------------------eEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 001310 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1103)
....++|+|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++....
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 345789999888777653 22222222222211 112222223556778864 55666666
Q ss_pred CCCeEEEEEcCCcee----EEEeccCCCCEEEEEEccCCCEEEEEe
Q 001310 864 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 905 (1103)
Q Consensus 864 ~dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~s 905 (1103)
..+.|....+..+.. ...+.+..+.+..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666776667665432 233444557899999999998777654
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.78 E-value=0.76 Score=49.08 Aligned_cols=207 Identities=10% Similarity=0.039 Sum_probs=115.3
Q ss_pred cEEEEEECCCCCEEEEEe------------CCCeEEEEEecCCCc-cccceEecc-----ccccEEEEEEec--CCCceE
Q 001310 398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 457 (1103)
Q Consensus 398 ~V~~~~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~l~~-----h~~~v~~~~~s~--d~~~~~ 457 (1103)
..-.++..|+|..+++++ .+|.|.++|.++... .... .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788887666652 689999999974321 2222 2333 234667777766 454323
Q ss_pred EEEEcC--CCceEEEeCCCCce----eEEeecC-CCceEEEEeeecCCccEEEEEEC-----------------CCeEEE
Q 001310 458 VITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 513 (1103)
Q Consensus 458 l~s~~~--d~~i~iwd~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i 513 (1103)
+++-.. +.+|.+|++..+.. +.++.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56788887765322 2334332 23467777754 5666665431 234444
Q ss_pred EEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-Cee--EEEEecccccCCceEEEEEcC-C
Q 001310 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 589 (1103)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~ 589 (1103)
++. ++.. .....-...+.++|+||++.|+.+.. ....|+.|++.. ++. .+.+. . ......+++.+ +
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 443 3322 22222235678999999999888754 245699998863 332 22331 1 25678889999 5
Q ss_pred CCEEEEEeCC-CcEEEEECC--CCeeEEEEc
Q 001310 590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1103)
Q Consensus 590 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 617 (1103)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344444543 244444444
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.72 E-value=0.45 Score=51.42 Aligned_cols=236 Identities=8% Similarity=-0.026 Sum_probs=117.1
Q ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEe----ccccccEEEEEEecC---CCceEEEEEcC------
Q 001310 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAP---CKQISVITCGD------ 463 (1103)
Q Consensus 397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l----~~h~~~v~~~~~s~d---~~~~~l~s~~~------ 463 (1103)
.....|+|.|||++|.++...|.|++++... ........+ .........++|+|+ +..+++.....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3567899999999444555778999888532 211111111 122345789999996 55433332221
Q ss_pred CCceEEEeCCCC--c--eeEE-eecC------CCceEEEEeeecCCccEEEEEEC-------------CCeEEEEEcCCC
Q 001310 464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL 519 (1103)
Q Consensus 464 d~~i~iwd~~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~ 519 (1103)
...|..|+...+ . .... +... ......++|. ++|.+.++.+. .|.|..++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666533 1 1111 1111 1113457774 46655555433 245666665532
Q ss_pred C------------eeEEecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEE--------eCCCC-------------
Q 001310 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEW--------NESEG------------- 565 (1103)
Q Consensus 520 ~------------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iw--------d~~~~------------- 565 (1103)
- ....+...-.....++|.| +|++.++ -...++...|.+. ....+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111211223467899999 5554443 3221111122221 11000
Q ss_pred --------eeEEEEecccccCCceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-CCCCCCceEE
Q 001310 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRIC 629 (1103)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~ 629 (1103)
..+..+.. ......+.|.. ++.++++.-..+.|...++..++.......- .....+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00011111 12456677753 4566666667778888887766544332111 1123578899
Q ss_pred EecCCCEEEEE
Q 001310 630 FNKNGTLLAVI 640 (1103)
Q Consensus 630 ~s~~g~~l~~~ 640 (1103)
+.|||.++++.
T Consensus 330 ~~pdG~lyv~t 340 (353)
T 2g8s_A 330 TGPDGYLYVLT 340 (353)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99999866543
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.68 E-value=0.23 Score=52.49 Aligned_cols=187 Identities=9% Similarity=-0.011 Sum_probs=103.2
Q ss_pred cCCCEEEEEc-C----CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC------CeEEEEEcCCcee
Q 001310 812 KNDAYLFSAS-G----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD------STILIYNARSSEV 878 (1103)
Q Consensus 812 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~ 878 (1103)
-++++++.|+ + ..+.+||..+.+-.. .+........++.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 3667777765 2 568899988765332 22222222222333 56788888765 4689999988653
Q ss_pred EE--EeccCCCCEEEEEEccCCCEEEEEeC---------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 879 IS--KLEGHSKRVTGLVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 879 ~~--~l~~h~~~V~~l~~s~dg~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
.. .+......-.++. -++++++.|+. -..+.+||+.+.+-.....+..... .-..+.+ +
T Consensus 131 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~--~ 200 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK------NHGLVFV--K 200 (306)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB------SCEEEEE--T
T ss_pred EeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh------cceEEEE--C
Confidence 22 2221111112222 36777777764 3448899999876444322211111 1122222 6
Q ss_pred CCEEEEE-eC-----CeEEEEECCCceEEEEeeCCC-CcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310 948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus 948 g~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
+++++.| .+ ..+.+||..+.+-...-.... ......+. -+++.++.|+.+ ..+.+||..+.+..
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 6666664 22 468999998876443211111 11222222 377888888854 56899999987655
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.67 E-value=0.13 Score=54.44 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=115.2
Q ss_pred CCEEEEEeCC----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----CceEEEeCCCCcee
Q 001310 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1103)
Q Consensus 408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~~ 478 (1103)
+..++.|+.+ ..+.+||+.+.+- .....+......-..+. -+++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 3578888876531 11111111111111222 2555 56666644 35888998776533
Q ss_pred EE--eecCCCceEEEEeeecCCccEEEEEECCC-----eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310 479 YS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1103)
Q Consensus 479 ~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1103)
.. +......-..+.+ ++.+++.|+.++ .+.+||..+.+-...-..........+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 22 1111111112222 456777777553 467777776543332211111111111223666666665433
Q ss_pred CC---ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEcCCCCCC
Q 001310 552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 623 (1103)
Q Consensus 552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1103)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+-...-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 22 3458899998876544322111 1122222333 45666666653 4689999988765544322211
Q ss_pred CCceEEEecCCCEEEEEECCC-----eEEEEEcCCCCe
Q 001310 624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 656 (1103)
Q Consensus 624 ~v~~v~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~ 656 (1103)
.....+..-++++++.|+.++ .+.+||..+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 112222333677777777543 478888877643
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.67 E-value=0.23 Score=52.75 Aligned_cols=180 Identities=11% Similarity=0.100 Sum_probs=97.4
Q ss_pred CeEEEEEcCCceeeE-EecCCCCCeeEEEEcCCCCCEEEEEeC-----C------CeEEEEEcCCceeEE--EeccCCCC
Q 001310 823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEVIS--KLEGHSKR 888 (1103)
Q Consensus 823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~~~--~l~~h~~~ 888 (1103)
..+.+||..+++-.. .+..+.......+... ++++++.|+. . ..+.+||..+.+-.. .+......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 678899998776432 2222223333333444 6778888873 1 137888988765321 12111111
Q ss_pred EEEEEEccCCCEEEEEeCC--------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e-C--
Q 001310 889 VTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E-- 956 (1103)
Q Consensus 889 V~~l~~s~dg~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~-d-- 956 (1103)
-..+.+ ++++++.|+.+ ..+.++|..+++-.....+.... ....+..-++++++.| . +
T Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 92 FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV--------YGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC--------BSCEEEEETTEEEEECCBCTTS
T ss_pred eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc--------cceeEEEECCEEEEEeCCCCCC
Confidence 112222 67777777743 35889999886644322221111 1122223466666664 3 2
Q ss_pred ---CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCceeEE
Q 001310 957 ---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQC 1014 (1103)
Q Consensus 957 ---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-----~v~vWd~~~~~~~~ 1014 (1103)
..+.+||..+.+-... ...........+..-+++.++.|+.++ .+.+||+.+.+...
T Consensus 162 ~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCeEEEC-CCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 3699999988764432 111111111122234778888887654 58899998886553
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.63 E-value=0.16 Score=53.82 Aligned_cols=234 Identities=10% Similarity=0.039 Sum_probs=122.8
Q ss_pred ecCCCEEEEEc-----CCeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeC----C-----CeEEEEEcC
Q 001310 811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 874 (1103)
Q Consensus 811 s~d~~~l~~~~-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~ 874 (1103)
.-++.+++.|+ -..+.+||..+.+-... +....... +++.. ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34566666665 14689999887653322 22111122 22222 5677787776 2 368899988
Q ss_pred CceeE--EEeccCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310 875 SSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 875 ~~~~~--~~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 947 (1103)
+.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+......+..... .-..+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI------GVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB------SCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc------ceEEEEE--C
Confidence 76532 222211111222222 67788877644 358889998866443222221111 1122222 6
Q ss_pred CCEEEEE-eC-----CeEEEEECCCceEEEEeeCCC-CcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEe
Q 001310 948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1015 (1103)
Q Consensus 948 g~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~ 1015 (1103)
+++++.| .+ ..+.+||..+.+-...-.... ...-..+. -+++.++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 32 469999998776543211111 11112222 377778878764 5699999998865432
Q ss_pred eccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-----cEEEEccCCCCCCCccCCc
Q 001310 1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1083 (1103)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~vw~~~~~~~~w~~~~~ 1083 (1103)
- ..+... .+|+. +.. ++.+++.|+.++ .|.+||+ ...+|...++
T Consensus 247 ~----~~p~~r---------~~~~~------~~~---~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~ 295 (308)
T 1zgk_A 247 A----PMKHRR---------SALGI------TVH---QGRIYVLGGYDGHTFLDSVECYDP--DTDTWSEVTR 295 (308)
T ss_dssp C----CCSSCC---------BSCEE------EEE---TTEEEEECCBCSSCBCCEEEEEET--TTTEEEEEEE
T ss_pred C----CCCCCc---------cceEE------EEE---CCEEEEEcCcCCCcccceEEEEcC--CCCEEeecCC
Confidence 1 112111 01211 112 267777777543 4677887 3457866533
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.45 E-value=0.37 Score=52.33 Aligned_cols=241 Identities=11% Similarity=0.043 Sum_probs=119.7
Q ss_pred cCCCEEEEEc--CCeEEEEEcCC----ceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeC-C---------CeEEEEEcC
Q 001310 812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR 874 (1103)
Q Consensus 812 ~d~~~l~~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~ 874 (1103)
-++++++.|+ ...+.+||..+ .+.+..+. .......++.+ ++++++.|+. + ..+.+||..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3777777776 36799999863 23332232 11122222333 5677887776 2 478999998
Q ss_pred CceeEE--Eec-cCCCCEEEEEEccCCCEEEEEeCC---------------------------------------CeEEE
Q 001310 875 SSEVIS--KLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV 912 (1103)
Q Consensus 875 ~~~~~~--~l~-~h~~~V~~l~~s~dg~~l~s~s~d---------------------------------------g~I~i 912 (1103)
+.+-.. .+. .....-.++. .++++++.|+.+ ..+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 765322 222 1111122222 578888888865 46889
Q ss_pred EEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e------CCeEEEEEC--CCceEEEEe-eCCCCcCeE
Q 001310 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPIS 982 (1103)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~------d~~v~iwd~--~~~~~~~~~-~~~h~~~v~ 982 (1103)
||..+.+-.....+..... .-.+++. -++++++.| . ...+..||+ .+.+-...- .........
T Consensus 173 yd~~~~~W~~~~~~p~~~~------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGT------AGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp EETTTTEEEEEEECSSCCC------BSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred EeCCCCcEEECCCCCCCCc------ccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 9998876544322221111 0012222 256666663 2 235778887 444332210 111111112
Q ss_pred EEEEccCCCEEEEEecC----------------------CcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCC
Q 001310 983 QATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCL 1040 (1103)
Q Consensus 983 ~l~fs~dg~~l~t~~~d----------------------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1103)
..+...++++++.|+.+ ..+.+||+.+.+.... ..++... .+|+
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r---------~~~~- 311 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQGR---------AYGV- 311 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSCC---------BSSE-
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCCc---------ccce-
Confidence 22334567777777732 2578899987765432 1122111 0122
Q ss_pred ceeeEEEEECCCCCcEEEEEecCCc----EEEEccCCCCCCCccCCcccc
Q 001310 1041 HVYPHAIAAHPLKPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEI 1086 (1103)
Q Consensus 1041 ~v~~~~~~~~p~~~~~l~~~~~dg~----v~vw~~~~~~~~w~~~~~~~~ 1086 (1103)
++... +.+++.||.++. =-+|-+.-.+.+|....|..+
T Consensus 312 -----~~~~~---~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 312 -----SLPWN---NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp -----EEEET---TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred -----eEEeC---CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 12222 678888886542 235655557888887777654
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.44 E-value=0.33 Score=51.55 Aligned_cols=232 Identities=9% Similarity=-0.029 Sum_probs=112.7
Q ss_pred EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-----C------CceEEEeCCCCceeE
Q 001310 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1103)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~ 479 (1103)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 34444 568899988765221 22222112222333344565 5555652 1 127788887765322
Q ss_pred EeecCCCceE--EEEeeecCCccEEEEEECC--------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1103)
Q Consensus 480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1103)
+..-..+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 44566666632 34788888765432211111111111222346666666654
Q ss_pred CC--CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEcCCCCC
Q 001310 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1103)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1103)
.. .....+.+||+.+.+-...-.... ....-..+.+ ++..++.|+.++ .+.+||+.+.+-...-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 21 112458999998876543322111 1122222333 556666777544 588899988765544332221
Q ss_pred CCCceEEEecCCCEEEEEECC--------------CeEEEEEcCCCCee
Q 001310 623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV 657 (1103)
Q Consensus 623 ~~v~~v~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~ 657 (1103)
.....+..-++++++.|+.+ ..+.+||..+.+..
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 11222223356777777753 23667887766443
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.42 E-value=0.2 Score=62.33 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=124.8
Q ss_pred EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccC
Q 001310 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1103)
Q Consensus 807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1103)
+.-.+|..+.+|.-...++.|+|+.+...+....- ..+|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 34567888888888888899999998887777653 34566666764 34566555 45799999974 3455555555
Q ss_pred ----CCCEEEEEEccCCCEEEEEe-------CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEE---cCCCCEE
Q 001310 886 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF---HKDQTRF 951 (1103)
Q Consensus 886 ----~~~V~~l~~s~dg~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f---s~dg~~l 951 (1103)
...|..-..+++.+|++..| -.|.+.+|+++.+. -+..+||.. .-..+.+ .+....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 45688888899999988654 24788899888633 334455532 1111111 1122333
Q ss_pred EEEe----CCeEEEEECCCc---eE------EEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEee
Q 001310 952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus 952 ~~~~----d~~v~iwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
+.+. .++++|-++... .. +...+++ -..-..++..|+.-..+...+.-|.|.++|+.||..+.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3332 267888888542 11 1111111 1233345666776677777788899999999999987443
Q ss_pred c
Q 001310 1017 L 1017 (1103)
Q Consensus 1017 ~ 1017 (1103)
+
T Consensus 297 r 297 (1630)
T 1xi4_A 297 R 297 (1630)
T ss_pred c
Confidence 3
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.034 Score=58.89 Aligned_cols=201 Identities=9% Similarity=0.016 Sum_probs=107.4
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEEEeccC-CCCEEEEEE--cc-CCCEEEEE-eCCCeEEEEEcCCCceeeeeeeecCCC
Q 001310 857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1103)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~ 931 (1103)
.++++++.||.|.-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.......+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888754 122222110 01 33344433 589999999998875443222221111
Q ss_pred cccCCCCceE---EEE------cCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcC------eEEEEEc-----cCCC
Q 001310 932 VMTLAPSETH---IQF------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 991 (1103)
Q Consensus 932 ~~~~~~~v~~---l~f------s~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~dg~ 991 (1103)
.. ++.. ... +.+|..++.+.+++++..|+.+|+.+.++..+.... ..+.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1110 001 244544444799999999999999998865432111 1111110 1235
Q ss_pred EEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310 992 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus 992 ~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
.++.+..+..+.+.+ .+|+ +..+....+.+.... ..+.. ....+.+ +.. ++++.||.|.-.|.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~------------~~~~~-~~~~s~D-g~~-~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD------------VPLAL-QNTFSKD-GMC-IAPFRDKSLLASDL 229 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT------------HHHHT-TCSSCSS-SCC-EEEETTTEEEEECS
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccc------------ccccc-ccccccC-CcE-EEECCCCEEEEEEC
Confidence 677777777888777 5564 333322222221110 00000 0000112 333 44677888888887
Q ss_pred CCCCCCC
Q 001310 1072 NEPGDTW 1078 (1103)
Q Consensus 1072 ~~~~~~w 1078 (1103)
......|
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 6666677
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.16 E-value=0.045 Score=52.89 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=83.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------EEEec--cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001310 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 915 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~ 915 (1103)
..++.++|+| ++.+.++ .+|.++-.+..++.. -..+- +-.. -.++.|.|+|.+.++ .||.|+-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887776 677776666544211 11110 1111 367899999998888 5698887765
Q ss_pred CCCceeeee--eeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceE------EEEeeCCCCcCeEEEEEc
Q 001310 916 DGWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC------LKQWFPISSVPISQATFS 987 (1103)
Q Consensus 916 ~~~~~~~~~--~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~------~~~~~~~h~~~v~~l~fs 987 (1103)
.+....... -..+-.+.-. .+..+.|.|+|.+-++. |+.++-....++.. ...+-......-.-+.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 332211100 0011111111 47899999999999999 88865444332210 011111223344456788
Q ss_pred cCCCEEEEEecCC
Q 001310 988 CDCRMVFTSFVDG 1000 (1103)
Q Consensus 988 ~dg~~l~t~~~dg 1000 (1103)
++|...++. +|
T Consensus 191 ~~G~l~~v~--~g 201 (236)
T 1tl2_A 191 SVGTLFGVQ--GG 201 (236)
T ss_dssp TTSCEEEEE--TT
T ss_pred CCCcEEEEe--CC
Confidence 888777655 66
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.09 E-value=0.21 Score=53.65 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=78.3
Q ss_pred CeeEEEEecCCCEEEEEcCCeEEEEEcCCce------------eeEEecC------CCCCeeEEEEcCCC--CCEEEEEe
Q 001310 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK------------TILTIMP------PSPTATSLAFNPHD--NNVIAIGM 863 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~------------~~~~~~~------~~~~i~~l~~s~~d--~~~lasg~ 863 (1103)
.+..+..+|+|++||..++..|.|..+..+. ..+.+.- ...+|..+.|+|-. +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 6788999999999999999999999987321 0112221 35689999999932 45899999
Q ss_pred CCCeEEEEEcCCce--eEEEec---------cCCCCEEEEEEccCCCEEEEEe--CCCeEEE
Q 001310 864 DDSTILIYNARSSE--VISKLE---------GHSKRVTGLVFSDALNILVSSG--GDAQIFV 912 (1103)
Q Consensus 864 ~dg~v~iwd~~~~~--~~~~l~---------~h~~~V~~l~~s~dg~~l~s~s--~dg~I~i 912 (1103)
.|+.|++||+.... +. .+. .+...|.+++|++++-.|...+ ..|.|+-
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99999999998631 22 222 2336789999999886666644 7777654
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.05 E-value=0.36 Score=51.07 Aligned_cols=187 Identities=11% Similarity=0.007 Sum_probs=101.3
Q ss_pred CCCEEEEEcC----------CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCC
Q 001310 813 NDAYLFSASG----------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARS 875 (1103)
Q Consensus 813 d~~~l~~~~d----------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~ 875 (1103)
++++++.|+. ..+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 6666666542 358889987654322 22222222223333 56777777644 3688999887
Q ss_pred ceeEE--EeccCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310 876 SEVIS--KLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1103)
Q Consensus 876 ~~~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 948 (1103)
.+-.. .+......-.++.+ ++++++.|+.+ ..+.+||+.+.+-.....+..... ....+.+ ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~--~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS------GAGVCVL--HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB------SCEEEEE--TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc------cceEEEE--CC
Confidence 65322 22211111222223 67788887765 458899998866443222221111 1222233 66
Q ss_pred CEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310 949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus 949 ~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
++++.| .+ ..+.+||..+.+-...........-.+++ .-+++.++.|+.+ ..+.+||+.+.+..
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 46999999887654321111111111222 2367788888754 45889999887665
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.98 E-value=0.082 Score=51.12 Aligned_cols=148 Identities=13% Similarity=0.006 Sum_probs=83.6
Q ss_pred CCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee------eEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT------ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~------~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1103)
..+..++|+|+|.+.++ .+|.+.-.+..+... -..+-. .-..-.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 36679999999998888 778765555433111 111100 011247899999 8877776 569888887643
Q ss_pred cee-------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeee--eeeecCCCcccCCCCceEEEEcC
Q 001310 876 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC--RSLQTPDGVMTLAPSETHIQFHK 946 (1103)
Q Consensus 876 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~fs~ 946 (1103)
... ...-.+-=..+..|.|.|+|.+.+.. |+.++-+....+..... ..-..-.+... ..+.+.|.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~---~yr~l~f~~ 191 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD---TFKFLFFSS 191 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG---GEEEEEECT
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc---eEEEEEECC
Confidence 211 11111111467999999999988876 77654332221110000 00000001111 245677999
Q ss_pred CCCEEEEEeCCeEE
Q 001310 947 DQTRFLLVHETHLA 960 (1103)
Q Consensus 947 dg~~l~~~~d~~v~ 960 (1103)
+|.+.++. ++.++
T Consensus 192 ~G~l~~v~-~g~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ-GGKFY 204 (236)
T ss_dssp TSCEEEEE-TTEEE
T ss_pred CCcEEEEe-CCeEE
Confidence 99988887 66443
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.96 E-value=2.1 Score=45.41 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=69.5
Q ss_pred eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
.+.++...-...+.|+|.|||+ ++++--..|.|++++..+++......+ . .+..........|+|+
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~------------~-~v~~~g~~GllGia~~ 88 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV------------P-GVSPSGEGGLLGIALS 88 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC------------T-TCCCBTTBSEEEEEEC
T ss_pred eeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc------------C-ceeecCCCCceeeEec
Confidence 4445555455889999999998 677665589999998766653211000 0 0122345678899999
Q ss_pred CC---CCEEEEE-e--CCCeEEEEEecCCC----cc---ccc-eEec-cccccEEEEEEecCCCceEEEEEc
Q 001310 406 PD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCG 462 (1103)
Q Consensus 406 pd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~-~~l~-~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1103)
|| +.+|... + .++.|.-|.+..+. .+ +.+ ..+. +....-..|+|.|||. +.++.+
T Consensus 89 Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 89 PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 96 4444433 2 34556667665521 11 111 0111 1111345799999997 555543
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.79 E-value=0.85 Score=48.38 Aligned_cols=227 Identities=11% Similarity=0.023 Sum_probs=108.2
Q ss_pred eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC----CC-------ceEEEeCCCCceeEE--eecCC
Q 001310 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1103)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~--~~~~~ 485 (1103)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37888888765222 12221111122223344555 5666662 11 167788776653221 11111
Q ss_pred CceEEEEeeecCCccEEEEEECC-------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC--Ccee
Q 001310 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1103)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~ 556 (1103)
..- +++. . ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.... ....
T Consensus 101 ~~~-~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLF-GLGE--V-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSC-EEEE--E-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred ccc-ceEE--E-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 111 1221 1 45667777654 24677777665433322211111111122256666666654221 1345
Q ss_pred EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1103)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1103)
+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+-...-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543322111 1122222332 45666666643 3577899887765443222211 11222233
Q ss_pred cCCCEEEEEECC--------------CeEEEEEcCCCCeeE
Q 001310 632 KNGTLLAVIANE--------------NRIKILETPESNSVD 658 (1103)
Q Consensus 632 ~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~ 658 (1103)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 356777777643 357778887765443
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.79 E-value=0.82 Score=49.47 Aligned_cols=142 Identities=8% Similarity=0.015 Sum_probs=68.2
Q ss_pred CeEEEEEcCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEc--CCCceeeeeeeecCCCcccC
Q 001310 866 STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDV--DGWGIQTCRSLQTPDGVMTL 935 (1103)
Q Consensus 866 g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~--~~~~~~~~~~~~~~~~~~~~ 935 (1103)
..+.+||..+.+- +..+......-.+++. -++++++.|+.+ ..+.++|+ .+.+-.....+..+..
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~---- 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG---- 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC----
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc----
Confidence 4789999987643 3333211111012222 266777777642 34777877 4433222111111111
Q ss_pred CCCceEEEEcCCCCEEEEE-eC----------------------CeEEEEECCCceEE--EEeeCCCCcCeEEEEEccCC
Q 001310 936 APSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCL--KQWFPISSVPISQATFSCDC 990 (1103)
Q Consensus 936 ~~~v~~l~fs~dg~~l~~~-~d----------------------~~v~iwd~~~~~~~--~~~~~~h~~~v~~l~fs~dg 990 (1103)
...+.+...++++++.| .+ ..+.+||..+.+-. ..+..+ ... ..+...++
T Consensus 243 --~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~ 317 (357)
T 2uvk_A 243 --VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNN 317 (357)
T ss_dssp --CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBS--SEEEEETT
T ss_pred --cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCC
Confidence 11222334466766664 21 25789998866433 221111 111 22344678
Q ss_pred CEEEEEecCC------cEEEEeCCCceeEEeec
Q 001310 991 RMVFTSFVDG------TLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus 991 ~~l~t~~~dg------~v~vWd~~~~~~~~~~~ 1017 (1103)
++++.|+.++ .|.++++++++.+....
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 8888888653 36666888887764443
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.71 E-value=3.5 Score=45.93 Aligned_cols=310 Identities=13% Similarity=0.101 Sum_probs=164.0
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCCC-------------------------CCCCceEEEec---CCCEEEEEEC-C
Q 001310 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------------------------LPENPRICFNK---NGTLLAVIAN-E 643 (1103)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~~~v~~v~~s~---~g~~l~~~~~-d 643 (1103)
+.+|+..|.|+|+-+.+++.+..+..... ...-..+++.. ||++|.+-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 56788999999999999999988754321 01123455542 6788887764 5
Q ss_pred CeEEEEEcCCCCeeEecccc-ccceeeeEEe--cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCC
Q 001310 644 NRIKILETPESNSVDAAGVL-SDNLRKLSVN--PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1103)
Q Consensus 644 g~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 720 (1103)
..|-..++...++-+.+..+ ...+-.+.+. |....+.. .....+-+. .||..+-.-..+.. .+|..-....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~-~~e~~~P~p----ndg~~~~~~~~~~y-~~f~~iD~~t 226 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFA-NAEFIIPHP----NDGKVFDLQDENSY-TMYNAIDAET 226 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEE-EECSCEESS----CSSSCCCTTSTTEE-EEEEEEETTT
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEe-cceeeccCC----CCCcccccCChhhc-eEEEEEcCCc
Confidence 66777777766554433322 2233344443 22221111 111111110 11111100000000 1111000000
Q ss_pred cc-ceeeeccCccccccEEEEEEecCCcEEEEeecCc---------------eEEEeecCCCcc-cccccccccc--CCe
Q 001310 721 SE-CQSLLLPSKVKANKISRLTYNNGGQAIFALASNG---------------VHLMWRWPRNDL-TLSTEATTKV--PPR 781 (1103)
Q Consensus 721 ~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg---------------~i~vw~~~~~~~-~~~~~~~~~~--~~~ 781 (1103)
-. ...+.. .+........++|.+.++.+.+. .+.++++..-.. ...|+...-. .+.
T Consensus 227 m~v~~Qv~v-----~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ 301 (638)
T 3sbq_A 227 MEMAFQVIV-----DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP 301 (638)
T ss_dssp CSEEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred cEEEEEEEc-----CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee
Confidence 00 000000 11223345577788777766432 244555543221 2233333333 467
Q ss_pred eecCCC----CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCcee-------------eEEecCC
Q 001310 782 LYQPRH----GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPP 842 (1103)
Q Consensus 782 ~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~-------------~~~~~~~ 842 (1103)
+.|... +..+ +..++ -......+.++|||+++++++ +.++.++|+..... ..+.. -
T Consensus 302 ViD~~~~~~~~~~~-~~~iP---~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~ 376 (638)
T 3sbq_A 302 VLDGRKKDGKDSKF-TRYVP---VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L 376 (638)
T ss_dssp EEECSCBTTBCCSS-EEEEE---ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred EEccccccccCCce-EEEEe---CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence 777665 2211 11111 234455688999999999998 68899999874211 11222 2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc----------eeEEEeccCCCCEEEEEE------ccCCCEEEEEe-
Q 001310 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG- 905 (1103)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~s- 905 (1103)
.-.....+|.+ +|....+-.-|..|.-|++... ..+..+.-|-. +-.+.- .|||++|++..
T Consensus 377 GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 377 GLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp CSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred CCcccEEEECC-CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecc
Confidence 34668899999 7866666778999999999763 35566665543 333333 57999999974
Q ss_pred --CCCe----------EEEEEcCCCce
Q 001310 906 --GDAQ----------IFVWDVDGWGI 920 (1103)
Q Consensus 906 --~dg~----------I~iwd~~~~~~ 920 (1103)
.|+. -.+.|+...+.
T Consensus 455 ~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 455 FSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp CCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred cccccCcCCCCCCCCcceeEecCCCce
Confidence 4543 36777776553
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.60 E-value=0.36 Score=60.10 Aligned_cols=236 Identities=11% Similarity=0.090 Sum_probs=133.3
Q ss_pred ecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEE
Q 001310 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1103)
Q Consensus 342 ~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~ 421 (1103)
.+|..+ ++|.=. ..++.|+|+++.+.+..+.+ ..+|..-.|-.+.. |+-.+ +..|.
T Consensus 73 MnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~aVy 128 (1630)
T 1xi4_A 73 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNAVY 128 (1630)
T ss_pred cCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCeEE
Confidence 466666 565543 57899999999887765332 34677777875444 44433 45699
Q ss_pred EEEecCCCccccceEeccc----cccEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEEEE
Q 001310 422 LYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1103)
Q Consensus 422 iwd~~~~~~~~~~~~l~~h----~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1103)
-|++.+.... ...+..| ...|..-.-+++.+++.++.-+ -.|.+.+|..+.+. .+.+.||.+....+.
T Consensus 129 HW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~ 205 (1630)
T 1xi4_A 129 HWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFK 205 (1630)
T ss_pred EeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheec
Confidence 9999753321 1123333 3457777788898863332222 34788889865443 455667766555554
Q ss_pred eeecCCcc-EEEEEEC---CCeEEEEEcCCC---CeeE-----Ee--cC--CCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310 493 PHAKENIH-FIFSISV---DGKIKAWLYDSL---GARV-----DY--DA--PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1103)
Q Consensus 493 ~~~~~~~~-~l~s~~~---dg~i~iwd~~~~---~~~~-----~~--~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1103)
+...+... +++.+.. .+.++|-++... .... .+ .. ...-..++..|+.-..+...+. .|.
T Consensus 206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G~ 281 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGY 281 (1630)
T ss_pred cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cce
Confidence 43222222 2222222 268888888653 1111 11 11 1122345667776666666654 678
Q ss_pred EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1103)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 611 (1103)
|+++|+.||..+..-+-.. ..|...+-.....-+++....|.|.--.+....
T Consensus 282 ~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 9999999998765544322 445444444443445555555655555544433
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.48 E-value=1.3 Score=46.84 Aligned_cols=193 Identities=7% Similarity=-0.017 Sum_probs=100.9
Q ss_pred EEecCCCEEEEEcC-----C-------eEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC-------Ce
Q 001310 809 ALSKNDAYLFSASG-----G-------VISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-------ST 867 (1103)
Q Consensus 809 ~~s~d~~~l~~~~d-----g-------~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-------g~ 867 (1103)
+...+++.++.|+. + .+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccce
Confidence 34567777777761 1 16778877654322 22211112222223 56777777754 36
Q ss_pred EEEEEcCCceeEE--EeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCc
Q 001310 868 ILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 939 (1103)
Q Consensus 868 v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 939 (1103)
+.+||..+.+-.. .+......-.++. .++++++.|+.+ ..+.++|+.+.+-.....+..... -
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-------~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-------M 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-------S
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-------c
Confidence 8889988765322 2221111111122 467787877642 358999998876444322221111 1
Q ss_pred eEEEEcCCCCEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC--------------
Q 001310 940 THIQFHKDQTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-------------- 999 (1103)
Q Consensus 940 ~~l~fs~dg~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-------------- 999 (1103)
.+++. -++++++.| .+ ..+.+||..+.+-...-.... ......+...++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEEEETTEEEEECCBCCBC----CCBCCBC
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEEEECCEEEEECCeeccCCCCceecccee
Confidence 12222 356666664 22 358899998776443211111 111112223467777777754
Q ss_pred CcEEEEeCCCceeEEe
Q 001310 1000 GTLSIHEASNLEVQCR 1015 (1103)
Q Consensus 1000 g~v~vWd~~~~~~~~~ 1015 (1103)
..+.+||+.+.+....
T Consensus 278 ~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 278 NDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCEEEEETTTTEEEEE
T ss_pred eeEEEEeCCCCEehhh
Confidence 3588899998876644
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.41 E-value=2.2 Score=47.62 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=64.4
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC---CCEEEEE--e-----
Q 001310 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV--H----- 955 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d---g~~l~~~--~----- 955 (1103)
-.....|+|.|||+++++-...+.|++++..++.......+...............|+|+|| +.+|.++ .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999999887654445788887765553321111111000001235779999996 5555553 2
Q ss_pred -------CCeEEEEECCCc-------eEEEE-eeCCCCcCeEEEEEccCCCEEEEEec
Q 001310 956 -------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 998 (1103)
Q Consensus 956 -------d~~v~iwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1103)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665322 11221 11111234788999999987776654
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.32 E-value=1 Score=50.32 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=90.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--EEEecc------CCCCEEEEEEccC----CCEEEEEeC-----
Q 001310 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG----- 906 (1103)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d----g~~l~s~s~----- 906 (1103)
...+.++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777654445788887665543 223321 2456779999994 444444432
Q ss_pred -------CCeEEEEEcCCC--ceeeee-eee-cCCCcccCCCCceEEEEcCCCCEEEEEeC-------------------
Q 001310 907 -------DAQIFVWDVDGW--GIQTCR-SLQ-TPDGVMTLAPSETHIQFHKDQTRFLLVHE------------------- 956 (1103)
Q Consensus 907 -------dg~I~iwd~~~~--~~~~~~-~~~-~~~~~~~~~~~v~~l~fs~dg~~l~~~~d------------------- 956 (1103)
...|.-++++.+ ...... .+. ...+.. -....|+|.|||.+.++..|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p 182 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTP 182 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEEECCCCCCCcccccccccccccc
Confidence 235666665432 221111 222 121111 14689999999998777322
Q ss_pred --------------CeEEEEECCCce-----------EEEEeeCCCCcCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCc
Q 001310 957 --------------THLAIYEAEELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1103)
Q Consensus 957 --------------~~v~iwd~~~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~dg~v~vWd~~~~ 1010 (1103)
+.|.-++.+ |. ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus 183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 234444433 33 223344455 457789999988765543 34444455555443
No 344
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=95.14 E-value=0.022 Score=51.02 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=58.5
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM 145 (1103)
Q Consensus 72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~ 145 (1103)
++|+|+-+.||||+.+|..++|..++.+.-..+... .+.+++|+.+.....+.+.+....+... .+.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999999977777766 8888999988888777665543333222 244556666
Q ss_pred HHHHH
Q 001310 146 LELKQ 150 (1103)
Q Consensus 146 ~~l~~ 150 (1103)
.-|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 345
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=94.66 E-value=0.037 Score=50.94 Aligned_cols=79 Identities=10% Similarity=0.178 Sum_probs=59.1
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM 145 (1103)
Q Consensus 72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~ 145 (1103)
++|+|+-+.||||+.+|..++|..+|++.-..+.....+.+++|+.+.....+.+.+....+... ...+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999999999999997666665667888899988888777665544443221 144455555
Q ss_pred HHHHH
Q 001310 146 LELKQ 150 (1103)
Q Consensus 146 ~~l~~ 150 (1103)
.-|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55553
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.10 E-value=6.5 Score=40.94 Aligned_cols=182 Identities=10% Similarity=0.049 Sum_probs=99.9
Q ss_pred EEEecCCCceEEEEEcCC-------------CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1103)
Q Consensus 339 ~v~~spdg~~llasgs~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 405 (1103)
+--++++|+++..+...+ ..|+..++..++... +.. .. +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345688998766665543 356666666554322 111 11 23678
Q ss_pred CCCCEEEEEe--CCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310 406 PDGSLLGVAY--SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1103)
Q Consensus 406 pdg~~las~~--~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1103)
+++++|+... .++ .|..-++.+.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 333 45555555432 22 3333432 467889985 2334334678888887766654433
Q ss_pred ecCCCceEEEEeeecCCccEEEEEECC--CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310 482 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1103)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1103)
.+ ... ..++| ++.+|+-.... ..|..-+++..... .+.. ..+ ..|+|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 23433 44566655443 24555555554432 2222 223 34888999998764322 356777
Q ss_pred EeCCCCe
Q 001310 560 WNESEGA 566 (1103)
Q Consensus 560 wd~~~~~ 566 (1103)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7765443
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.12 Score=54.63 Aligned_cols=194 Identities=10% Similarity=0.036 Sum_probs=104.1
Q ss_pred EEEEEcCCCceEEEeCCCCceeEEeecC-CCceEEEEeeec-CCccEEEEE-ECCCeEEEEEcCCCCeeEEecCC----C
Q 001310 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1103)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 529 (1103)
.++.++.||.|.-.|..+|+.+.+++.. ..++....-... .++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5888999999999999999999888654 123322211111 122333333 68999999998776544433211 1
Q ss_pred ccEEE---EEE-c----cCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCc-----eEEEEEc-----CCCC
Q 001310 530 LGCTR---MAY-S----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 591 (1103)
Q Consensus 530 ~~i~~---~~~-s----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 591 (1103)
.++.. ..+ . ..+..+++++. ++.++..|..+|+.+..+...... .. ..|.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11211 000 0 13455666654 777999999999999888753210 10 0011110 1235
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEE-----cCCCCCCCC-ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE
Q 001310 592 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1103)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1103)
.++.+..+..+.+.+ .+|+ +..+ ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777666666665 3343 1111 100000000 00011234655 557888999999988887665
No 348
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=93.92 E-value=0.044 Score=43.45 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001310 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS 58 (1103)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1103)
++|+-+=|++||...||.+++.+|.+|.+++.+ ...=...+|+=+|..++.+=.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 578999999999999999999999999998764 222346677778877766633
No 349
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=93.77 E-value=0.022 Score=51.59 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred ccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHH
Q 001310 67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSA 140 (1103)
Q Consensus 67 ~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~ 140 (1103)
.+.. ++|+|+-++||||+.+| .++|..++.+.-..+.....+.+++|+.+.....+.+.+....+... ...+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 3344 89999999999999999 99999999986655543345666777777666666555543333222 2445
Q ss_pred HHHHHHHHHH
Q 001310 141 RKNMMLELKQ 150 (1103)
Q Consensus 141 r~~l~~~l~~ 150 (1103)
-..|+.-|++
T Consensus 109 ~~lL~~fL~~ 118 (148)
T 2j49_A 109 LNLLLYFLNE 118 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566666663
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.65 E-value=7.8 Score=40.31 Aligned_cols=180 Identities=8% Similarity=0.092 Sum_probs=101.5
Q ss_pred EEECCCCCEEEEEeCC--------------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE--cCCC
Q 001310 402 VVWSPDGSLLGVAYSK--------------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDK 465 (1103)
Q Consensus 402 ~~~spdg~~las~~~d--------------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~--~~d~ 465 (1103)
--|+++|.+|+.+... ..|+..++.+++.. .+.... +..|+++++.+++... ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~----~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST----VLDPDP----CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE----EEECSC----EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce----EeecCC----ccEEEEeCCEEEEEeecCCCCc
Confidence 3457889999887543 35777777766422 222211 2367889985333331 2344
Q ss_pred ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1103)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1103)
.|..-++.. .....+..+.. ..+.+ ++..|+-.+. ...|.+-+++.......... ... ..+.|++.+|
T Consensus 130 ~Iy~~~~dG-s~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~i 198 (302)
T 3s25_A 130 SLYRIRIDG-EEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNV 198 (302)
T ss_dssp EEEEEETTS-CCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEE
T ss_pred eEEEEECCC-CCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEE
Confidence 566666653 33444544433 23433 4455655544 56788888776654444332 222 3466999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCC
Q 001310 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV 610 (1103)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~ 610 (1103)
+...... ...|..-++..+.. ..+.. ..+ ..|+|++.+|+.+.. .+.|..-++...
T Consensus 199 y~t~~~~--~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 199 YYMDVNR--DNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEGGG--TTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEcCC--CcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 8775422 24677777766553 33332 223 337788888877642 356666666543
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.36 E-value=3.9 Score=45.54 Aligned_cols=195 Identities=12% Similarity=0.121 Sum_probs=115.9
Q ss_pred cCCCEEEEEc--CCeEEEEEcCCceeeEEecCC-CCCeeEEEEc--CCCCCEEEEEeC-------CCeE---------EE
Q 001310 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 870 (1103)
Q Consensus 812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--~~d~~~lasg~~-------dg~v---------~i 870 (1103)
.||++|..-. +..|...++...++-+.+..+ ...+..++|. | +..|++.+++ ||.. -+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4789999887 477889999988876665543 4578888886 6 5667776653 2321 11
Q ss_pred ---EEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC---------------eEEEEEcCC-------Cceeeee-
Q 001310 871 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR- 924 (1103)
Q Consensus 871 ---wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg---------------~I~iwd~~~-------~~~~~~~- 924 (1103)
.|..+.+...++.- .+....+...++|++.++.+.+. .+.++|+.. |+.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222222211 12233355578888888876542 256666431 2211100
Q ss_pred -eeecCCCcc------------cCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceE-------------EEEeeCC
Q 001310 925 -SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 976 (1103)
Q Consensus 925 -~~~~~~~~~------------~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~-------------~~~~~~~ 976 (1103)
-+....+.. +.+...-.+.++|||++++++ .+.++.++|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111110 111345678999999999995 677899999984211 22211
Q ss_pred CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310 977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus 977 h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
-.......+|.++|.-..|---|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2556778999999955555568999999999864
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.26 E-value=4.1 Score=48.50 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=108.0
Q ss_pred cCCCEEEEEcC-----CeEEEEEcCCceeeEEe--------cCCCCCeeEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001310 812 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 872 (1103)
Q Consensus 812 ~d~~~l~~~~d-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd 872 (1103)
.++..++.|+. +.+.+||..+++-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56777777752 45889998766433222 11112334444543 566888887543 688999
Q ss_pred cCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCCC--eEEEEEcCCCceeeeeeee-cCCCcccCCCCceEEEEcCC
Q 001310 873 ARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 947 (1103)
Q Consensus 873 ~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~fs~d 947 (1103)
..+.+- +..+......- +++...++++++.||.++ .+.+||..+.+........ .+... ....++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 888542 22222111111 223324788999988765 6899999986643322100 11111 12334666666
Q ss_pred -CCEEEEE-e--C-----CeEEEEECCCce------EEEEee-CCCCcCeEEEEEccCCCEEEEEecC--------CcEE
Q 001310 948 -QTRFLLV-H--E-----THLAIYEAEELT------CLKQWF-PISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1103)
Q Consensus 948 -g~~l~~~-~--d-----~~v~iwd~~~~~------~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~d--------g~v~ 1003 (1103)
+++++.| . + +.+.+||..+.+ ...... ......-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6666664 3 2 359999998776 211111 1111111123333447888888743 4699
Q ss_pred EEeCCCceeE
Q 001310 1004 IHEASNLEVQ 1013 (1103)
Q Consensus 1004 vWd~~~~~~~ 1013 (1103)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998876
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.49 E-value=11 Score=38.70 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=108.5
Q ss_pred CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1103)
Q Consensus 336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 415 (1103)
.|..|+..... .++. . ||.|..|-.....++.. + ......|..++...+-. ++. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEE-EEE-E
Confidence 45566655443 2333 3 78888887654333221 0 00123566666654332 333 4
Q ss_pred CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeee
Q 001310 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1103)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1103)
||.|..|-......+... ..-...|..++...+- .+.-. ||.|..|-....-.+.........|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 899999987654333211 1113467777765443 23334 8999999755422221111123446666542
Q ss_pred cCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1103)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1103)
....++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+..-..
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~-- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTE-- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGG--
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCcc--
Confidence 222333 34 79999996654332211111123455555443332222 2 44588886543211111001
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1103)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 609 (1103)
....|..++..... .++.. ||.|+.|-...
T Consensus 217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 12356666655443 33333 89999997654
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.31 E-value=34 Score=40.38 Aligned_cols=250 Identities=8% Similarity=0.001 Sum_probs=124.2
Q ss_pred EEE-ecCCCceEEEEEcCC----CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310 339 SMD-FHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1103)
Q Consensus 339 ~v~-~spdg~~llasgs~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 413 (1103)
.+. ++||+++++++-|.. ..++++|+++++.+.. .|. ...+... + -......++|..+...+++
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~--~-------~~~~~~~~~W~d~~~~~~~ 201 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK--L-------LEGKFTYPTWINKDTIIFN 201 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC--B-------CCEETCCEEEEETTEEEEC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc--c-------cccccceeeEECCCEEEEE
Confidence 444 899999766665543 4699999999986642 110 0000000 0 0001123466533333332
Q ss_pred E----------eCCCeEEEEEecCCCccccceEeccccccE-EEEEEecCCCc---eEEEEEcCC---CceEEEeCCC--
Q 001310 414 A----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWDAVT-- 474 (1103)
Q Consensus 414 ~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v-~~~~~s~d~~~---~~l~s~~~d---~~i~iwd~~~-- 474 (1103)
. +....|+.|.+.+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|...
T Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 280 (711)
T 4hvt_A 202 LVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN 280 (711)
T ss_dssp CCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS
T ss_pred eCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC
Confidence 1 112468888876643211 11343333332 34555677764 135554422 3455666543
Q ss_pred CceeEEeecCCCceEEEEeeecCCccEEEEE----------ECCCeEEEEEcCCCC-------eeEE-e-cCCCccEEEE
Q 001310 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSLG-------ARVD-Y-DAPGLGCTRM 535 (1103)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~-~~~~~~i~~~ 535 (1103)
++ +..+....... +.. ..++.+++.. ...+.|...++.+.. .... + ......+..+
T Consensus 281 ~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (711)
T 4hvt_A 281 LK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFI 355 (711)
T ss_dssp CE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEE
T ss_pred Cc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEE
Confidence 33 22332222111 111 1133444422 246678888887631 1222 2 3334467788
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCe-eEEE-EecccccCCceEEEEEcCCCCEEEE-Ee---CCCcEEEEECCC
Q 001310 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMNK 609 (1103)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~~ 609 (1103)
.+..+ ..+++... ++...+.++++.+++ .... +.... .+.+......+++..++. .+ .-+.++.+|+.
T Consensus 356 ~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~- 429 (711)
T 4hvt_A 356 STTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT- 429 (711)
T ss_dssp EECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-
T ss_pred EEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-
Confidence 88876 34444433 446678999987775 2233 32221 145666666677655544 33 44678888877
Q ss_pred Ce
Q 001310 610 VQ 611 (1103)
Q Consensus 610 ~~ 611 (1103)
++
T Consensus 430 ~~ 431 (711)
T 4hvt_A 430 HE 431 (711)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.31 E-value=17 Score=38.87 Aligned_cols=171 Identities=13% Similarity=0.164 Sum_probs=94.9
Q ss_pred eEEEEEcCCc--eeeEEecCC------CCCeeEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCceeEEEec-----
Q 001310 824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 883 (1103)
Q Consensus 824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 883 (1103)
+|.+||+.+. +.++++.-+ ...+..+++. |. ++.++...+ ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777888888 887776432 3457788887 21 134444444 46789999999987654442
Q ss_pred ---------cC----CCCEEEEEEccC----CCEEEEEeCCCeEEEEEcCCCceeee---eeeecCCCcccCCCCceEEE
Q 001310 884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 943 (1103)
Q Consensus 884 ---------~h----~~~V~~l~~s~d----g~~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~ 943 (1103)
|. ...|..|++||+ ++.|....-.+ -++|.+.+.-+... ..++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 10 246888999998 67777666554 24555543111110 011110 0000001223566
Q ss_pred Ec-CCCCEEEEE-eCCeEEEEECCC-----ceEEEEeeCCCCcCeEEEEEccCCCEEEEE
Q 001310 944 FH-KDQTRFLLV-HETHLAIYEAEE-----LTCLKQWFPISSVPISQATFSCDCRMVFTS 996 (1103)
Q Consensus 944 fs-~dg~~l~~~-~d~~v~iwd~~~-----~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1103)
+. .+|.+.++- ..+.|..|+..+ ...........-..+..+.+..+|.+.+++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 75 567766664 778899999875 111111112223346667776676655544
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.64 E-value=20 Score=36.72 Aligned_cols=183 Identities=9% Similarity=0.011 Sum_probs=97.2
Q ss_pred CeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001310 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1103)
Q Consensus 804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1103)
.|..++...+...++ .+|.+..|-....-.+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 456666554433333 378888886653222111111124688888764 2444445 9999999866532221111
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEE
Q 001310 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1103)
Q Consensus 884 ~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd 963 (1103)
.....|..++...+...+ .. ||.|+.|-........ .+.... ..|..++...+...++ .++.|+.|=
T Consensus 138 ~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 233567777765443222 33 7999999776522111 111001 2466776655544444 699999997
Q ss_pred CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
....-.+.. .......|..++...+-. ++. . ||.|+.|-...
T Consensus 205 ~n~~gqlg~-p~~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTV-PTEALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCC-CGGGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred CCCCCCCCC-CcccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 654322221 111134566666544333 333 3 89999997654
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.82 E-value=13 Score=44.02 Aligned_cols=200 Identities=13% Similarity=0.071 Sum_probs=101.1
Q ss_pred cCCCceEEEEEcCC----CceEEEeCCCCceeEEe-e-----cCCCce-EEEEeeecCCccEEEEEECCC------eEEE
Q 001310 451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAPV-YSLCPHAKENIHFIFSISVDG------KIKA 513 (1103)
Q Consensus 451 ~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~-----~~~~~v-~~~~~~~~~~~~~l~s~~~dg------~i~i 513 (1103)
.++. +++.||.+ ..+.+||..+++-...- . ...... .+++.. ..++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 45788888776543222 1 011111 112221 11456777776543 4677
Q ss_pred EEcCCCCeeEEecCCCc-cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec--ccccCCceEEEEEcCC-
Q 001310 514 WLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA- 589 (1103)
Q Consensus 514 wd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 589 (1103)
||..+.+-...-..... .-.+++...+++.++.|+.+... .+.+||..+.+-...-.. .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 77766432221111111 11233333478888888765543 699999998765433220 1101122333555555
Q ss_pred CCEEEEEeC--C-----CcEEEEECCCCe------eEEEEcCCCCCCC-CceEEEecCCCEEEEEEC--------CCeEE
Q 001310 590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPE-NPRICFNKNGTLLAVIAN--------ENRIK 647 (1103)
Q Consensus 590 ~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~-v~~v~~s~~g~~l~~~~~--------dg~i~ 647 (1103)
+..++.|+. + ..+.+||+.+.. ........ .... -.+++...++++++.|+. ...+.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 555666664 2 458899998876 22221110 0111 123334444777777764 34588
Q ss_pred EEEcCCCCe
Q 001310 648 ILETPESNS 656 (1103)
Q Consensus 648 iw~~~~~~~ 656 (1103)
+||..+.+.
T Consensus 630 ~yd~~t~~W 638 (695)
T 2zwa_A 630 SLDPLSETL 638 (695)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 888877643
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.69 E-value=33 Score=38.01 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.3
Q ss_pred ccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCccccceEec---------cccccEEEEEEecC
Q 001310 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 452 (1103)
Q Consensus 397 ~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d 452 (1103)
...+.|+|.|||. .|+++...|.|++++.........+..+. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 55566788999999754321111111111 11456789999996
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.48 E-value=31 Score=37.38 Aligned_cols=260 Identities=12% Similarity=0.071 Sum_probs=119.4
Q ss_pred CCCeeEEEEec--CCCEEEEEcCCe--EEEEEcC-CceeeEEec------C--------CCCCeeEEEEcCCC-CCEEEE
Q 001310 802 QEAVPCFALSK--NDAYLFSASGGV--ISLYIVM-TFKTILTIM------P--------PSPTATSLAFNPHD-NNVIAI 861 (1103)
Q Consensus 802 ~~~v~~l~~s~--d~~~l~~~~dg~--i~iwd~~-~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~las 861 (1103)
...|.+|++.| ++.+.+.+..+. -.||... .++.-..+. . ....|.++++.|.+ ...|.+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 45689999998 666776665541 1233332 222212211 1 11257789998733 445565
Q ss_pred EeCCCeEEEEEcCCceeEEEecc-------------------CCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCcee
Q 001310 862 GMDDSTILIYNARSSEVISKLEG-------------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQ 921 (1103)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~ 921 (1103)
+...+.|...+ ..|+.-..+.. ....+.+|.+.|. ...|..+..++.|...+ +.|+.
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t- 210 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD- 210 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS-
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC-
Confidence 66566555442 22322222211 1235789999873 34444444444444332 22221
Q ss_pred eeeeeec-CC-Cccc-----CCCCceEEEEcCC-CCEEEEEeCCeEEEEECCCceEEEEeeCC-CC---cCeEEEEEcc-
Q 001310 922 TCRSLQT-PD-GVMT-----LAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPI-SS---VPISQATFSC- 988 (1103)
Q Consensus 922 ~~~~~~~-~~-~~~~-----~~~~v~~l~fs~d-g~~l~~~~d~~v~iwd~~~~~~~~~~~~~-h~---~~v~~l~fs~- 988 (1103)
...+.. .. .... ....+.++++.|+ ...|.++..+.|+..+-. ++.-..+... .. ..+..+.++|
T Consensus 211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence 111111 00 0000 0124788999986 356666666666655432 3332222111 11 3456788876
Q ss_pred CCCEEEEEec-----------CCcEEEEeCCC-ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcE
Q 001310 989 DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQ 1056 (1103)
Q Consensus 989 dg~~l~t~~~-----------dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~ 1056 (1103)
+...|.++.. ++...+|.... |+.-..+. .-++... .-..+....++++|.++..
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~-----------~~~~~~~~~~~~~p~~~~~ 355 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQ-----------AWLTVKRQAMTADAHAPVG 355 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSS-----------CCCCCCTBSEEECCSSSCC
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCcc-----------ccceEEEEEEEECCCCCCE
Confidence 3344444432 23344555443 23222221 0111100 0000111245677765666
Q ss_pred EEEEecCCcEEEEccCCCCCCCccC
Q 001310 1057 FAVGLTNGEVYVIEPNEPGDTWAVL 1081 (1103)
Q Consensus 1057 l~~~~~dg~v~vw~~~~~~~~w~~~ 1081 (1103)
|.+++.++.| |.-...+.+|...
T Consensus 356 l~~g~~~g~l--~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 356 VYFGTTGGEI--WASADEGEHWQCI 378 (394)
T ss_dssp EEEECTTSCE--EEESSTTSBCEEE
T ss_pred EEEEeCCCeE--EEECCCCCCceEc
Confidence 7777666654 4444456678653
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.42 E-value=35 Score=40.29 Aligned_cols=244 Identities=10% Similarity=0.019 Sum_probs=118.6
Q ss_pred EEE-ECCCCCEEEEEe-CC----CeEEEEEecCCCccccceEecccc-----ccEEEEEEecCCCceEEEEE--------
Q 001310 401 RVV-WSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC-------- 461 (1103)
Q Consensus 401 ~~~-~spdg~~las~~-~d----~~i~iwd~~~~~~~~~~~~l~~h~-----~~v~~~~~s~d~~~~~l~s~-------- 461 (1103)
.+. ++||+++++.+- .. ..++++|+.+++.+.....-.... .....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcC
Confidence 344 899999988762 22 369999999987553211100000 0113447774443 34432
Q ss_pred --cCCCceEEEeCCCCc--eeEEeecCCCceE-EEEeeecCCcc---EEEEEECC---CeEEEEEcCCCCe-eEEecCCC
Q 001310 462 --GDDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPG 529 (1103)
Q Consensus 462 --~~d~~i~iwd~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~~-~~~~~~~~ 529 (1103)
+....|+.|.+-+.. -...+.+....+. +.....++... .+++.+.+ ..+.+.+.+.... ...+....
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 112458888776543 2234444444432 22222222221 35554423 3355555543222 23333222
Q ss_pred ccEEEEEEccCCCEEEEEecC------CCCceeEEEEeCCCCe-------eEEE-EecccccCCceEEEEEcCCCCEEEE
Q 001310 530 LGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILA 595 (1103)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1103)
.. .+..+.++.+++....+ .-..+.|...|+.++. ..+. +.... ...+..+.+..+ ..+++
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEE
Confidence 21 12344566555533221 0125568888876531 1222 32222 356778888865 56666
Q ss_pred EeCCCc--EEEEECCCCe-eEEE-EcCCCCCCCCceEEEecCCCE-EEEEEC---CCeEEEEEcC
Q 001310 596 AGDDHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTL-LAVIAN---ENRIKILETP 652 (1103)
Q Consensus 596 ~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~g~~-l~~~~~---dg~i~iw~~~ 652 (1103)
...++. ++++++.++. .... +..... ..+.....++++.. +++.+. -+.+..++..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666664 6677776664 2333 333321 22444555566554 444333 3566666665
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.85 E-value=32 Score=36.78 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=93.7
Q ss_pred ceEEEeCCCC--ceeEEeecC------CCceEEEEee-ecC----CccEE-EEEECCCeEEEEEcCCCCeeEEec----C
Q 001310 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHFI-FSISVDGKIKAWLYDSLGARVDYD----A 527 (1103)
Q Consensus 466 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~----~ 527 (1103)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++.++ ++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4678899998 888776532 3456777776 211 12343 444457789999998876654331 1
Q ss_pred C--------------CccEEEEEEccC----CCEEEEEecCCCCceeEEEEe---CCCC---eeEEEEecccccCCceEE
Q 001310 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEG---AIKRTYQGLQLQHNSVSV 583 (1103)
Q Consensus 528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~---~~~~~~~~~~~~~~~v~~ 583 (1103)
. ...+..++++|+ ++.|+.....+. .++-.. ++.. ..++. .+.......-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEE-eeecCCCCCcce
Confidence 1 125788999998 788877665331 122221 1111 11111 122200123345
Q ss_pred EEEc-CCCCEEEEEeCCCcEEEEECCC-C---eeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310 584 VHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1103)
Q Consensus 584 ~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 640 (1103)
+++. .+|..+++--..+.|..|+..+ . +....+...........+.+.++|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5665 5666666667888999999875 1 222333222233345566666666544443
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.88 E-value=88 Score=38.45 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1103)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1103)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567777777 7889999999999999999999988765
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.26 E-value=74 Score=32.23 Aligned_cols=196 Identities=6% Similarity=0.012 Sum_probs=104.8
Q ss_pred eEEEEecCCCEEEEEcCCeEE---EEEcCCceeeEEecCCCCCeeEEEEcCC-CCCEEEEEeCCCeEEEEEcCCc-----
Q 001310 806 PCFALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSS----- 876 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~dg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~lasg~~dg~v~iwd~~~~----- 876 (1103)
..+..+....+++..+.|.++ +|++..+.... +......|.++.. ++ +..+++..+.+|.++-..+..-
T Consensus 28 ~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~ 105 (276)
T 3no0_A 28 NILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQ 105 (276)
T ss_dssp EEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCST
T ss_pred EEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcC
Confidence 334444455666666677754 34444332211 2224556766654 32 3568999999999999887653
Q ss_pred -eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee-----eeeeeecCCCcccCCCCceEEEEcCCCCE
Q 001310 877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1103)
Q Consensus 877 -~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 950 (1103)
.....++ -.+.+..+....+...++..+..|.+..++...-... -...+....+ ..|.++...+++..
T Consensus 106 G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 106 GMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPY 179 (276)
T ss_dssp TEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSE
T ss_pred CeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCE
Confidence 2122233 2355666666656678888899999888876541110 0111221111 24555554444444
Q ss_pred E-EEEeCCeEEEEECCCce-------EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEE--EeCCCce
Q 001310 951 F-LLVHETHLAIYEAEELT-------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNLE 1011 (1103)
Q Consensus 951 l-~~~~d~~v~iwd~~~~~-------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v--Wd~~~~~ 1011 (1103)
+ +++..|.++...+..-. -+..+ ...+.+..+....++..++..+.+|.+.. +++..-.
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSC
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCC
Confidence 4 44677888877764322 12211 12334444443333344555566676666 6665433
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.08 E-value=95 Score=33.38 Aligned_cols=162 Identities=14% Similarity=0.181 Sum_probs=81.9
Q ss_pred EEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCE
Q 001310 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1103)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 816 (1103)
+..++++......++...+|.+..|-.......-.+.......+. ....+ ....|..++... ...
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~----------~v~~l----~~~~i~~va~G~-~hs 171 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPR----------VIESL----RGIEVVDVAAGG-AHS 171 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE----------ECGGG----TTSCEEEEEECS-SEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCe----------Eeccc----CCCeEEEEEeCc-CeE
Confidence 444566666667777788888888875443221111100000000 00001 122455554432 233
Q ss_pred EEEEcCCeEEEEEcCCc-e----------eeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-e------
Q 001310 817 LFSASGGVISLYIVMTF-K----------TILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E------ 877 (1103)
Q Consensus 817 l~~~~dg~i~iwd~~~~-~----------~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~------ 877 (1103)
++...+|.|..|-.... + ....+.. ....|..++... +....+.-..||.|+.|-.... +
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 44445777888865321 0 1111111 234577777654 3456666788999999965431 1
Q ss_pred ----eEEEeccC-CCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310 878 ----VISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1103)
Q Consensus 878 ----~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~ 916 (1103)
....+..- ...|..++...+ +.+....||.|+.|-..
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred CCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCC
Confidence 11222221 224666666533 44445789999999764
No 365
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.55 E-value=1.1e+02 Score=33.63 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 001310 579 NSVSVVHFDTAKD-QILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 608 (1103)
.....++|.|++. +++++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3567899999996 67777788999999754
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.03 E-value=18 Score=44.54 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=35.0
Q ss_pred cCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccc
Q 001310 979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1103)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~ 1019 (1103)
..+.+++..+|..+++|-+.|+++|+|++.+++++.+....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 35667778889999999999999999999999998876643
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=68.21 E-value=1.3e+02 Score=32.18 Aligned_cols=194 Identities=8% Similarity=0.068 Sum_probs=97.9
Q ss_pred eeEEEEecCCCE-EEEEcCCeEEEEEcCCc-----------eeeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310 805 VPCFALSKNDAY-LFSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1103)
Q Consensus 805 v~~l~~s~d~~~-l~~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1103)
+..++++..... ++...+|.|..|-.... .....+.. ....|..++.. ....+.-..||.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 444555544333 33344677777754321 11122221 22356666664 4566667789999999
Q ss_pred EcCC-ce----------eEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCC-ce--------eeeeeeecCC
Q 001310 872 NARS-SE----------VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW-GI--------QTCRSLQTPD 930 (1103)
Q Consensus 872 d~~~-~~----------~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~-~~--------~~~~~~~~~~ 930 (1103)
-... ++ ....+.. ....|..++......+.+....||.|+.|-.... ++ .....+..+.
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 7543 11 1112222 2345777777543356666778999999965431 10 1111111111
Q ss_pred CcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc----------eEEEEeeC-CCCcCeEEEEEccCCCEEEEEecC
Q 001310 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL----------TCLKQWFP-ISSVPISQATFSCDCRMVFTSFVD 999 (1103)
Q Consensus 931 ~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~----------~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~d 999 (1103)
+ ..|..++.... ..++...++.|+.|=.... ........ .....|..++.. ..+.+....|
T Consensus 264 ~-----~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~ 335 (389)
T 3kci_A 264 G-----LGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTED 335 (389)
T ss_dssp T-----SCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETT
T ss_pred C-----CcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCC
Confidence 1 12444443322 2334467888888866421 11111111 112356555543 3444555789
Q ss_pred CcEEEEeCCC
Q 001310 1000 GTLSIHEASN 1009 (1103)
Q Consensus 1000 g~v~vWd~~~ 1009 (1103)
|.|+.|-...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999998654
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.78 E-value=17 Score=41.48 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCEEEEEe-------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 938 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 938 ~v~~l~fs~dg~~l~~~~-------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
..-.|+|+|+|+++++.. ++.+.+.+..+++..+.+...-...++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 356799999999666531 124666777778776554444478999999999999988763
No 369
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.88 E-value=24 Score=39.68 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=43.9
Q ss_pred CceEEEEcCCCCEEEEEe-------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310 938 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1103)
Q Consensus 938 ~v~~l~fs~dg~~l~~~~-------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1103)
..-.|+|+++|.+.++.. .+.++.++..+|+....+.......++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999999887431 126777787778765543322356789999999999988774
No 370
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=59.76 E-value=1.9e+02 Score=30.96 Aligned_cols=263 Identities=8% Similarity=0.032 Sum_probs=118.1
Q ss_pred CccEEEEEECC--CCCEEEEEeCCC--eEEEEEe-cCCCccccceE---ecc--------ccccEEEEEEecC--CCceE
Q 001310 396 GVSVNRVVWSP--DGSLLGVAYSKH--IVQLYAY-HGGSDARQQLE---IDA--------HVGNVNDLAFSAP--CKQIS 457 (1103)
Q Consensus 396 ~~~V~~~~~sp--dg~~las~~~d~--~i~iwd~-~~~~~~~~~~~---l~~--------h~~~v~~~~~s~d--~~~~~ 457 (1103)
...|.+|++.| ++...|.+ ..| .-.||-. ..|+....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 35799999998 45555444 333 0123333 33332221110 111 1135788999873 33 3
Q ss_pred EEEEcCCCceEEEeCCCCceeEEeec-------------------CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310 458 VITCGDDKTIKVWDAVTGSRTYSFEG-------------------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1103)
Q Consensus 458 l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1103)
+..+...+.|...+ ..|+.-..+.. ....+.+|.+.+...+. ++.+..++.|... ..
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGVFES--TD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEEEEE--SS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCEEEE--CC
Confidence 44454455555443 33333222211 12356788876543333 4444444444332 22
Q ss_pred CCeeE-EecC--C-----------CccEEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC---Cc
Q 001310 519 LGARV-DYDA--P-----------GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH---NS 580 (1103)
Q Consensus 519 ~~~~~-~~~~--~-----------~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~---~~ 580 (1103)
..... .... . ...+.++++.|+ ...++++.. .+ |+..+- .++.-..+.... .. ..
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----~g-l~~s~D-~G~tW~~~~~~l-~~~~~~~ 279 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----CG-IYRMDR-REGVWKRIGDAM-PREVGDI 279 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET----TE-EEEEET-TTTEEECGGGGS-CTTTCSC
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC----Ce-EEEeCC-CCCcceECCCCC-CCCCccc
Confidence 22221 1111 0 134888999986 355655542 22 544442 233222222111 11 23
Q ss_pred eEEEEEcCC-CCEEEEEeC-----------CCcEEEEECCC-CeeEEEEcC--CCCC----CCCceEEEecC-CCEEEEE
Q 001310 581 VSVVHFDTA-KDQILAAGD-----------DHVIKIWDMNK-VQLLTTIDA--GGGL----PENPRICFNKN-GTLLAVI 640 (1103)
Q Consensus 581 v~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~----~~v~~v~~s~~-g~~l~~~ 640 (1103)
+..++++|. ...++++.. ++...+|...+ |+.-..+.. .... .....++++|. ...|+++
T Consensus 280 ~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g 359 (394)
T 3b7f_A 280 GFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFG 359 (394)
T ss_dssp EEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEE
T ss_pred eEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEE
Confidence 567788763 345555532 23344555443 333333321 1100 01236888874 3556667
Q ss_pred ECCCeEEEEEcCCCCeeEeccccccceeeeEEe
Q 001310 641 ANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1103)
Q Consensus 641 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~ 673 (1103)
+.++.|..- ...++....+......+.++.+.
T Consensus 360 ~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 360 TTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred eCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence 655554432 23344444443333345555443
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.38 E-value=1.6e+02 Score=30.20 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=81.3
Q ss_pred CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE-ecCCCEEEEEcCC
Q 001310 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL-SKNDAYLFSASGG 823 (1103)
Q Consensus 745 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s~d~~~l~~~~dg 823 (1103)
+..+++..+.+|.++--.+..-.... ..| .....+.. . ..+..+.. ..+...++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~---------------r~G--~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLR---------------TAG--KVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCC---------------TTC--EESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccc---------------cCC--eEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 45678889999999876543211100 011 12222221 3 34444333 4445555566678
Q ss_pred eEEEEEcCCcee---------eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---------eEEEeccC
Q 001310 824 VISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGH 885 (1103)
Q Consensus 824 ~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h 885 (1103)
.+..+....-.. ...+. ....|.++...+ ++..+++.+..|.++-.++.... ....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 887777653211 11222 335666766555 45678888999998888774311 11223223
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~ 917 (1103)
.+.+..+....+...++..+.+|.+.-.++..
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 35565554444445566667777766666654
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.76 E-value=1.7e+02 Score=30.32 Aligned_cols=158 Identities=8% Similarity=0.089 Sum_probs=89.8
Q ss_pred CCCeeEEEEec---CCCEEEEEc-CCeEEEEEcCCceee-------EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 001310 802 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1103)
Q Consensus 802 ~~~v~~l~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1103)
...|.++..-+ +..+++..+ .|.++...+...... ..+.. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455443333 466777666 799998887653322 12332 34555555554 4567888888998888
Q ss_pred EEcC--C---------ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceee-----eeeeecCCCccc
Q 001310 871 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 934 (1103)
Q Consensus 871 wd~~--~---------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~ 934 (1103)
+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+..-.... ...+..... .
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-~- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-R- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT-T-
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC-C-
Confidence 8776 2 11112222 34567777776677789999999999988876533211 111111110 0
Q ss_pred CCCCceEEE-EcCCCCEEEEEeCCeEEEEECCC
Q 001310 935 LAPSETHIQ-FHKDQTRFLLVHETHLAIYEAEE 966 (1103)
Q Consensus 935 ~~~~v~~l~-fs~dg~~l~~~~d~~v~iwd~~~ 966 (1103)
+.+..+. ...+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1233333 33444455556777777776643
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=58.18 E-value=1.6e+02 Score=29.71 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=71.2
Q ss_pred CCCeeEEEEec-CCCEEEEEc-CCeEEEEEcCCce------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001310 802 QEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1103)
Q Consensus 802 ~~~v~~l~~s~-d~~~l~~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1103)
...|..+.... +..+++..+ +|.++...+.... ....+. ....+..+.... +...++..+..|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 44555554421 456666666 7999998876542 111222 234566655555 5567888899998888875
Q ss_pred CC---------ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310 874 RS---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1103)
Q Consensus 874 ~~---------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~ 917 (1103)
.. |...-.+. ..+.|.++...+++..++..+..|.++...++.
T Consensus 145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 42 22222233 235677766666677888999999999988865
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.89 E-value=1.7e+02 Score=34.06 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=47.9
Q ss_pred CCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE---------------ecC-----CCCCeeEEEEcCCCCCEEE
Q 001310 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---------------IMP-----PSPTATSLAFNPHDNNVIA 860 (1103)
Q Consensus 801 ~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~---------------~~~-----~~~~i~~l~~s~~d~~~la 860 (1103)
-..+...++.+++. .+++-.||.+--.+......... +.+ ....|.++.+ +..+++
T Consensus 160 ~R~Ph~L~avs~~~-liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~---~~~fLf 235 (729)
T 3f7f_A 160 VRVPHFLFYVSPQF-SVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLF---HERYLI 235 (729)
T ss_dssp TSCEEEEEECSSSB-EEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEE---TTTEEE
T ss_pred ccCCcEEEEECCCe-EEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEecc---CCcEEE
Confidence 34555666676655 77777776643333222111111 111 1112444444 467999
Q ss_pred EEeCCCeEEEEEcCCceeEEEecc
Q 001310 861 IGMDDSTILIYNARSSEVISKLEG 884 (1103)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~ 884 (1103)
+-+.|.++|+|++.+++++....-
T Consensus 236 tL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 236 VLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEcCCeEEEEEcCCCceEEeecc
Confidence 999999999999999998877553
No 375
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.20 E-value=2.1e+02 Score=29.65 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=85.5
Q ss_pred CCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccc
Q 001310 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 775 (1103)
++...++..+..|.++.-.+.............-.....+.+..+........++..+..|.+..+....+.....+..
T Consensus 107 ~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~- 185 (327)
T 3uc1_A 107 TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA- 185 (327)
T ss_dssp TSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT-
T ss_pred CCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC-
Confidence 3567788888889887766543222111111111111245566666666667788888888887776552111111111
Q ss_pred cccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCcee-------eEEec--CCCCC
Q 001310 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT-------ILTIM--PPSPT 845 (1103)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~-------~~~~~--~~~~~ 845 (1103)
..|.. ...+ .....|.++...+++.+++..+ .|.++.-.+..... +..+. ...+.
T Consensus 186 ----------a~Gv~--~i~L---~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 186 ----------TSGVQ--GMRF---NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp ----------SBCEE--SSCC---CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred ----------CCCee--eecC---CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 01111 1112 1344566665555555555555 68888887654322 22222 21344
Q ss_pred eeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1103)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1103)
+..+.... +...++..+.+|.+.-++...
T Consensus 251 lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 251 LVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 55544444 445666677788777776643
No 376
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=53.18 E-value=53 Score=28.24 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=47.7
Q ss_pred hcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCHHH
Q 001310 18 EEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92 (1103)
Q Consensus 18 ~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~ 92 (1103)
.--|.++.+.+++=-.+..+ ...=.-....|+|++|+..+...-.++.... . + +.-.=..| ...|++++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-a-~~~lg~~~---~~~~~~~~ 99 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-K-G-YIRKAACL---VAMREWSK 99 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-H-HHHHHHHH---HHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-H-H-HHHHHHHH---HHCCCHHH
Confidence 33377777666553322221 1111223445888888888765423322211 1 1 21222222 34678888
Q ss_pred HHHHHHhhccccCCCCHHHHHHHHhhc
Q 001310 93 ALNILKKDLKDFAPGNEELFKELAQLL 119 (1103)
Q Consensus 93 a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1103)
|+..+++-+. +.+.+++-...|..+|
T Consensus 100 A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 100 AQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 8888887544 3334555555555544
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.15 E-value=45 Score=38.77 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.2
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310 980 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus 980 ~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
.|.++. .+..+|+|-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 455444 4578999999999999999999998877764
No 378
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=48.31 E-value=49 Score=33.87 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhhhcC-hhHHHHHHHH--hcCCCh-h--HHHH--HHHhcCcCHHHHHHHhccCCCcCCcccccchhhhh
Q 001310 5 NKDLVFLILQFLNEEG-FTESAHMLER--ESRFYF-D--MKFF--EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEI 76 (1103)
Q Consensus 5 ~~e~~rli~q~L~~~g-~~~s~~~L~~--Es~~~~-~--~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 76 (1103)
.-+.++++.+++...| +.++.+.|++ +.++.. + +..+ .-....|++++|+..+.. +.+ .. + +..
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~--~~-~-~~~ 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS--LE-C-MAM 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS--HH-H-HHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC--HH-H-HHH
Confidence 3456777888888877 7777777776 233322 2 1111 334456888888888775 111 10 1 111
Q ss_pred hhhhhhhhhcCCCHHHHHHHHHhh
Q 001310 77 RKQNFFEALDGHDIAKALNILKKD 100 (1103)
Q Consensus 77 ~~q~~~Ell~~~~~~~a~~~l~~~ 100 (1103)
.-+. ++..|+.++|...|++-
T Consensus 136 l~~~---~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 136 TVQI---LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHH
T ss_pred HHHH---HHHCCCHHHHHHHHHHH
Confidence 1122 23466777777777663
No 379
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.89 E-value=38 Score=34.96 Aligned_cols=110 Identities=13% Similarity=0.171 Sum_probs=60.3
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccc-cCCCCHHHHHHHH
Q 001310 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKD-FAPGNEELFKELA 116 (1103)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1103)
+.+|++.|.+|+|=+|.+.+..+ |.-++.++++++|+.+|..-..- +.......-.+|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67999999999999999887654 11223345566666666553221 1122334445666
Q ss_pred hhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcchHHHHHHHHHHHHHHHhcC
Q 001310 117 QLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHC 187 (1103)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c 187 (1103)
.++. ..... .+ .....+.+..|+ +|-+.+|++ .+. ..++++.|++|=....
T Consensus 77 ~llv-ev~~~----~~-~~~~~~~~~rl~-~l~~~~p~~------------~~~-r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLL-EVYDL----AE-VKVDDISVARLV-RLIAELDPS------------EPN-LKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHH-HHHHH----TT-CCCSHHHHHHHH-HHHTTCCTT------------CTT-HHHHHHHHHHHHHHTS
T ss_pred HHHH-HHHHH----cC-CCCCHHHHHHHH-HHHHHCCCC------------Cch-HHHHHHHHHHHHhhcC
Confidence 5544 11111 11 111244555555 444444441 222 4778899999987654
No 380
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.75 E-value=48 Score=34.43 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=59.1
Q ss_pred HHHHHHHhcCcCH---HHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhcccc-CCCCHHHHH
Q 001310 38 MKFFEDMILDGKW---EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDF-APGNEELFK 113 (1103)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~-~~~~~~~~~ 113 (1103)
+.+|++.|.+|+| =+|.+.+..+ . .+ ++.++++++|+.+|..-..-| .......-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi------~----~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV------A----AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH------H----HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH------H----HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 5689999999999 8887776543 0 12 233455666666665421111 122334445
Q ss_pred HHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcchHHHHHHHHHHHHHHHhcC
Q 001310 114 ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHC 187 (1103)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c 187 (1103)
+|+.++. ..... .++ ....+.+.+|++-+. .+|+ -.|.| ..+|+.|++|=....
T Consensus 76 DL~~llv-evy~~----~~~-~~~~~~~~rL~~L~~-~~~~------------~~p~r-~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLV-DTFRQ----AGQ-RVDGASRGKLLGCLR-LFQP------------GEPVR-KRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHH-HHHHH----HTC-CCCHHHHHHHHHHHT-TSCT------------TCHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHH-HHHHH----cCC-CCCHHHHHHHHHHHH-hCCC------------CCcHH-HHHHHHHHHHHhhcC
Confidence 6665544 11111 111 122345555554444 3343 12334 779999999988643
No 381
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.30 E-value=2.9e+02 Score=28.58 Aligned_cols=198 Identities=9% Similarity=0.092 Sum_probs=102.6
Q ss_pred CCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEee---cCCCcccccc
Q 001310 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR---WPRNDLTLST 772 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~---~~~~~~~~~~ 772 (1103)
|+...+++.+.+|.|+--.+............+ ...+.+..+........++..+..|.+.-+. ++......
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l---ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a-- 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM---KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD-- 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC---CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS--
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcccccc---CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC--
Confidence 445566777777777654433111100001111 1334555555666666777788887755433 33221111
Q ss_pred ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEE-EEec--CCCEEEEEc-CCeEEEEEcCCceee------E--Eec
Q 001310 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-ALSK--NDAYLFSAS-GGVISLYIVMTFKTI------L--TIM 840 (1103)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~s~--d~~~l~~~~-dg~i~iwd~~~~~~~------~--~~~ 840 (1103)
.|..+ ..-+.. .....|.++ .+.. ++.+++.++ .|.++...+...... . .+.
T Consensus 78 --------------~G~~i-~~~i~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~ 141 (323)
T 1wp5_A 78 --------------LGQHI-ANIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK 141 (323)
T ss_dssp --------------CCEEG-GGTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC
T ss_pred --------------CCcCh-hhccCC-CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC
Confidence 11100 000111 123345544 3332 245555555 799998887533221 1 233
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC---------ceeEEEeccCCCCEEEEEEccCCC-EEEEEeCCCeE
Q 001310 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------SEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQI 910 (1103)
Q Consensus 841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~dg~I 910 (1103)
. ...+..+.... +...++..+.+|.+..+.... |...-.+. ..+.|.++...+++. .+++.+..|..
T Consensus 142 e-~d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~g 218 (323)
T 1wp5_A 142 N-DDQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAV 218 (323)
T ss_dssp T-TCCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEE
T ss_pred C-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCce
Confidence 2 24555555544 455778888999888887643 11112222 234576665544455 78888999988
Q ss_pred EEEEcCC
Q 001310 911 FVWDVDG 917 (1103)
Q Consensus 911 ~iwd~~~ 917 (1103)
+..+++.
T Consensus 219 Kr~~~~e 225 (323)
T 1wp5_A 219 KKMKLTE 225 (323)
T ss_dssp EEEEGGG
T ss_pred EEEEHHH
Confidence 8887765
No 382
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.12 E-value=2.9e+02 Score=28.56 Aligned_cols=156 Identities=11% Similarity=0.066 Sum_probs=83.5
Q ss_pred eeEEEEecCCCEEEEEcCCeEEEEEcC---------CceeeEEe-c-CCCCCeeEEEEcCC--CCCEEEEEeCCCeEEEE
Q 001310 805 VPCFALSKNDAYLFSASGGVISLYIVM---------TFKTILTI-M-PPSPTATSLAFNPH--DNNVIAIGMDDSTILIY 871 (1103)
Q Consensus 805 v~~l~~s~d~~~l~~~~dg~i~iwd~~---------~~~~~~~~-~-~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iw 871 (1103)
+..+..+.....++..+.|.+.-+... .|..+..+ . .....|.++..-++ ++.+++..+.+|.++-.
T Consensus 42 ~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 42 LAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Confidence 334444455556666667876555542 12322221 1 12335665433331 25688899999999998
Q ss_pred EcCC--------ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee-----eeeeeecCCCcccCCCC
Q 001310 872 NARS--------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPS 938 (1103)
Q Consensus 872 d~~~--------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~ 938 (1103)
.+.. |...-.+.. .+.+..+....+...++..+.+|.+..++...=... -.+.+....+ ..
T Consensus 122 ~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~-----d~ 195 (323)
T 1wp5_A 122 ELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG-----DY 195 (323)
T ss_dssp EGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT-----CC
T ss_pred EHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC-----CE
Confidence 8752 221222332 256666666555667888899999888887641110 0111222111 24
Q ss_pred ceEEEEcCCCC--EEEEEeCCeEEEEECCC
Q 001310 939 ETHIQFHKDQT--RFLLVHETHLAIYEAEE 966 (1103)
Q Consensus 939 v~~l~fs~dg~--~l~~~~d~~v~iwd~~~ 966 (1103)
|.++..-+++. +++++..|..+..++..
T Consensus 196 Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 196 IVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55554433343 44456777777766643
No 383
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=44.08 E-value=3.9e+02 Score=29.98 Aligned_cols=296 Identities=13% Similarity=0.086 Sum_probs=144.2
Q ss_pred CCcCceEEEecCCCceEEEEEcCCCc----------------------------EEEEECCCCCeeeeeeeeEeeccccc
Q 001310 333 GSSSPMSMDFHPVQHTLLLVGTNVGD----------------------------TGLWDVNSGQKLFIRNFKVWDIGACS 384 (1103)
Q Consensus 333 h~~~V~~v~~spdg~~llasgs~d~~----------------------------v~iwd~~~~~~~~~~~~~~~~~~~~~ 384 (1103)
|-..+....|.-||+.=+++...+|+ +.|+|=.+|+.+.+..+..-.-..+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 55578888888999765677766665 78888888887765332100000000
Q ss_pred cceeeeeccCCCcc--EEEEEECC-CCCEEEEEe---CCCeEEEEEecCCCccccceEeccc-----------cccEEEE
Q 001310 385 MLFKTALVRDPGVS--VNRVVWSP-DGSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAH-----------VGNVNDL 447 (1103)
Q Consensus 385 ~~~~~~~~~~h~~~--V~~~~~sp-dg~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h-----------~~~v~~~ 447 (1103)
.-- -.++... ..++++-. +.-.++.+- ....|..||..+++... ...+... .....-.
T Consensus 257 WGD----~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~va 331 (591)
T 2zux_A 257 WGD----SYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSIA 331 (591)
T ss_dssp GTC----SSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEEE
T ss_pred ccc----ccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCeeE
Confidence 000 0001111 22333321 112233321 12346677776654211 1111110 0133444
Q ss_pred EEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEEEeeecCCccEEEEEECCC----eEEEEEcCCCCee
Q 001310 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGAR 522 (1103)
Q Consensus 448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~ 522 (1103)
.+.-||+. -++.|+ .++| ..|+.+.+. .+|...+.-..|.|+..|.-++.+.+++ -..+.|..+++.+
T Consensus 332 DVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 332 DVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp CCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred eCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 55667765 444444 1445 455555544 3788888777787776677777776652 2445788888877
Q ss_pred EEecCC--CccEEEEEEccCCC--EEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC
Q 001310 523 VDYDAP--GLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1103)
Q Consensus 523 ~~~~~~--~~~i~~~~~s~dg~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 598 (1103)
...... .+......|.|+.. .+.+ . -.+++. +|+.+.... . ...-..+-|..+...-+.-
T Consensus 405 w~~~~~~d~Gr~~~~Didp~~pG~E~w~--~-------~~l~~~-~G~~i~~~~--p--~~~N~~i~WdGDl~relld-- 468 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPRYPGQEVWA--N-------GSLYSA-KGVKIGSGV--P--SSTNFGIWWDGDLLREQLD-- 468 (591)
T ss_dssp EEECCSSCCCCEEEECCCTTSSSCEEEE--T-------TEEECT-TSCBCSSCC--C--SCCSEEECCSSSSSCEEEE--
T ss_pred EEcCCCCCCCceeEEecCCCCCceEEEe--c-------CceECC-CCCEecCCC--C--CCcceeEEECCCCcHhhhC--
Confidence 765432 23333344445422 2222 0 124553 333332210 0 0112346677665333332
Q ss_pred CCcEEEEECCCCeeEEEEcCCC-----CCCCCceEEEe--cCCC-EEEE-EECCCeEEEEEcCCCCe
Q 001310 599 DHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFN--KNGT-LLAV-IANENRIKILETPESNS 656 (1103)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s--~~g~-~l~~-~~~dg~i~iw~~~~~~~ 656 (1103)
.+.|.-|+...++....+...+ +...-.++... -|.+ -++. ..++..++||.......
T Consensus 469 ~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 469 SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 2478889988777444444322 11222334433 2322 3343 44556799998764433
No 384
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.93 E-value=34 Score=32.41 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=65.3
Q ss_pred cccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHH
Q 001310 68 YSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLE 147 (1103)
Q Consensus 68 ~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 147 (1103)
+...+.-+|.+|..+=.+++|++.+|..+|++.+..-. .+...=..|..++...+. .++.+.++ |...+++.
T Consensus 108 l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~-s~~kLr~kL~~II~~Kd~-~H~~lqnF------Sy~~~~~k 179 (235)
T 3bu8_A 108 VVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP-TTQKLRNDLLNIIREKNL-AHPVIQNF------SYETFQQK 179 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG-GGHHHHHHHHHHHHHTCT-TSHHHHTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC-CchHHHHHHHHHHhccCc-ccHHHHhc------cHHHHHHH
Confidence 34458889999999999999999999999999877432 122222356666655443 23333333 56677778
Q ss_pred HHHhhhcCccccccccCCCcchHHHHHHHHHHHHHHHhcCCCC
Q 001310 148 LKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANP 190 (1103)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~ 190 (1103)
+..++...+= .++. -||+.|.+-+.++|...
T Consensus 180 i~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~~ 210 (235)
T 3bu8_A 180 MLRFLESHLD---------DAEP---YLLTMAKKALKSESAAS 210 (235)
T ss_dssp HHHHHHTTSC---------CCCC---HHHHHHHHHTTTC----
T ss_pred HHHHHHHHhc---------ccch---HHHHHHHHHHhhccccc
Confidence 8777765221 2222 47777888888777553
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.85 E-value=90 Score=39.40 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=31.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001310 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1103)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1103)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 445566666 77899999999999999999999887653
No 386
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=40.21 E-value=30 Score=30.31 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccCCCc--CCcccccchhhhhh-
Q 001310 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKV--DDNRYSTKIYFEIR- 77 (1103)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~-~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~--~~~~~~~~~~~~~~- 77 (1103)
+..+.++...|+..|.+.|| +.+.+.+-++-|++.+ +.+.|++.++++... -...+..-.+..+.
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34567789999999999997 4556666666665443 334555666555332 11111111111111
Q ss_pred --------hhhhhh-hhcCCCHH-HHHHHHHhhcccc
Q 001310 78 --------KQNFFE-ALDGHDIA-KALNILKKDLKDF 104 (1103)
Q Consensus 78 --------~q~~~E-ll~~~~~~-~a~~~l~~~l~~~ 104 (1103)
-..+|| +|.++++. +|+.++|+ |.|.
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir~-L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLSR-LRLF 122 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHHT-CCSC
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHHc-CCCC
Confidence 124566 77777744 45666653 5543
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.18 E-value=1.1e+02 Score=34.85 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=47.6
Q ss_pred cEEEEEEccCCCEEEEEecCC--------CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE
Q 001310 531 GCTRMAYSANGRRLFSCGTSK--------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1103)
..-.|+|+|.|+++++--.+. .+...+.+.+..+++..+.+.++. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 346789999999665532111 134567888888999888888776 6789999999999887764
No 388
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.10 E-value=3.6e+02 Score=27.64 Aligned_cols=204 Identities=13% Similarity=0.091 Sum_probs=105.9
Q ss_pred CCCccceeeccccccccccccccCCccc--eeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccc
Q 001310 696 EDVKPEISVEAENKSEVEKPLFARPSEC--QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1103)
Q Consensus 696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 773 (1103)
++...+++.+.+|.|+--.+........ .....-.....+.+..+........++..+..|.++-.....-. ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip---~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIK---DSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSC---C--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCC---CCC
Confidence 4556677777888777655432211110 00000001133455566566666678888888876654432110 000
Q ss_pred cccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec---CCCEEEEE-cCCeEEEEEcCCce-------eeEEecCC
Q 001310 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSA-SGGVISLYIVMTFK-------TILTIMPP 842 (1103)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~-~dg~i~iwd~~~~~-------~~~~~~~~ 842 (1103)
.. ..|..+ ...+.. .....|.++...+ +..+++.. ..|.++...+.... ....+..
T Consensus 83 r~----------~~G~~i-~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~- 149 (312)
T 1suu_A 83 RA----------SKGQNI-SELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND- 149 (312)
T ss_dssp ---------------CBG-GGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-
T ss_pred cc----------CCCcCh-hhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-
Confidence 00 011100 000111 1233444443332 34444444 57988888875432 2222333
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC---------ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1103)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw 913 (1103)
...+..+.... +...++..+.+|.+..+.... |...-.+. ..+.|.++....++..+++.+..|..+..
T Consensus 150 ~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~ 227 (312)
T 1suu_A 150 KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRL 227 (312)
T ss_dssp TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEE
Confidence 45666655554 456788899999999888754 11222233 24567777666666778889999999999
Q ss_pred EcCC
Q 001310 914 DVDG 917 (1103)
Q Consensus 914 d~~~ 917 (1103)
+++.
T Consensus 228 ~~~e 231 (312)
T 1suu_A 228 NMSK 231 (312)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8865
No 389
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.50 E-value=3.8e+02 Score=27.40 Aligned_cols=192 Identities=12% Similarity=0.115 Sum_probs=92.4
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcccc------ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe---CC---
Q 001310 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQ------QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AV--- 473 (1103)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~------~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd---~~--- 473 (1103)
|+..++++.+.+|.|+--.+.+-+..+. -..+..+. .+..+....... .++..+..|.++-.. +.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D-~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED-FIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------C-CEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC-EEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556778888899887665543211110 00122222 233333333333 355555566644443 32
Q ss_pred ---CCceeE---EeecCCCceEEEEeee-cCCccEEEEEECCCeEEEEEcCCCC-----eeE--EecCCCccEEEEEEcc
Q 001310 474 ---TGSRTY---SFEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLG-----ARV--DYDAPGLGCTRMAYSA 539 (1103)
Q Consensus 474 ---~~~~~~---~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~--~~~~~~~~i~~~~~s~ 539 (1103)
.|..+. .+. ....|.++.... ..++.+++..+..|.++.-.+..-. ... .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 222221 122 334565554321 1345679999999999998764211 111 12222 3444444444
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCC----C---eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310 540 NGRRLFSCGTSKEGESFLVEWNESE----G---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1103)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 608 (1103)
+...++..+. .+.+..++... + .-++.+.-.. ...|.++....++..++..+..|.++..++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555543 44455555432 1 1111121111 3456666555556678888999998888764
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.00 E-value=1.7e+02 Score=33.08 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.7
Q ss_pred cEEEEEEccCCCEEEEEecC--------CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe
Q 001310 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1103)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 597 (1103)
....++|.++|.+.+..-.. +.+...++.++..+++..+.+.+.. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 46789999999877743211 1123468888988898877776543 35789999999999887753
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=34.62 E-value=1.7e+02 Score=24.56 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCC
Q 001310 947 DQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1103)
Q Consensus 947 dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1025 (1103)
+|.+.+. ..||.+.+|+...+..+..--......-..+.+..||.+++... ++.+ +|...+....
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~~------------ 88 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNTVGQE------------ 88 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSCCCSS------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCCcCCC------------
Q ss_pred CCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCCCCccCC
Q 001310 1026 TSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1082 (1103)
Q Consensus 1026 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~w~~~~ 1082 (1103)
+...++-.+||.+.+++ ...|..-|
T Consensus 89 ----------------------------~~~~~~L~~dGnlvly~----~~~W~s~~ 113 (113)
T 3mez_B 89 ----------------------------GDYVLILQINGQAVVYG----PAVWSTAA 113 (113)
T ss_dssp ----------------------------SCCEEEECTTSCEEEEC----SEEEESCC
T ss_pred ----------------------------CCEEEEEcCCceEEEec----CCEecCCC
No 392
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=34.35 E-value=1.2e+02 Score=26.74 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=9.7
Q ss_pred cCCCHHHHHHHHHhh
Q 001310 86 DGHDIAKALNILKKD 100 (1103)
Q Consensus 86 ~~~~~~~a~~~l~~~ 100 (1103)
..|++++|+..+++-
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 456677777766653
No 393
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=34.01 E-value=40 Score=26.53 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001310 8 LVFLILQFLNEEGFTESAHMLERESRFY 35 (1103)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Es~~~ 35 (1103)
+.-||..||+=.||+-|+..++-|+|..
T Consensus 21 i~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 21 VASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 5678999999999999999999999985
No 394
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=30.89 E-value=2.2e+02 Score=24.96 Aligned_cols=71 Identities=13% Similarity=0.280 Sum_probs=44.9
Q ss_pred HhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhccc
Q 001310 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1103)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1103)
....|+|++|+.++.+.-.++++. . -.+...=..| ...|++++|+..+++-+. +.+.+++.+..|+.++..
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~-~--~a~~~lg~~~---~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERD-P--KAHRFLGLLY---ELEENTDKAVECYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-H--HHHHHHHHHH---HHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-H--HHHHHHHHHH---HHcCchHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 456799999999998653333222 1 1122222233 357999999999998654 344567777778876653
No 395
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=30.51 E-value=7.2e+02 Score=29.15 Aligned_cols=432 Identities=9% Similarity=0.016 Sum_probs=0.0
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCC----CCCCCceEEEec-CCCEEEEEECC--------C
Q 001310 579 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGG----GLPENPRICFNK-NGTLLAVIANE--------N 644 (1103)
Q Consensus 579 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~-~g~~l~~~~~d--------g 644 (1103)
+.|..++++|.. ..++++...+.|+.++-....-........ ....+.+++++| +.+.++++... .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Q ss_pred eEEEEEcCCCCeeEecccccc---------ceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccc
Q 001310 645 RIKILETPESNSVDAAGVLSD---------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1103)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 715 (1103)
.-.....+.++.......... .+..+++.| .+...+..+...+ -.+|..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p---------------------~~~~~v~~g~~~g-~gl~~S 160 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDP---------------------NDNRILYLGTRCG-NGLWRS 160 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECS---------------------SCTTCEEEECSTT-CCEEEE
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECC---------------------CCCCEEEEeeccC-CcEEEe
Q ss_pred cccCCccceeeeccCc------------cccccEEEEEEecCCc-------EEEEeecCceEEEeecCCCcccccccccc
Q 001310 716 LFARPSECQSLLLPSK------------VKANKISRLTYNNGGQ-------AIFALASNGVHLMWRWPRNDLTLSTEATT 776 (1103)
Q Consensus 716 ~~~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~g~-------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 776 (1103)
......-.....++.. .....+..+.++|... .+.++..++.-.+|.-.....
T Consensus 161 ~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~-------- 232 (737)
T 2cn3_A 161 TDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGV-------- 232 (737)
T ss_dssp SSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTS--------
T ss_pred CCCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCC--------
Q ss_pred ccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC--------CeEEEEEcCCceeeEEecCCCCCe--
Q 001310 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--------GVISLYIVMTFKTILTIMPPSPTA-- 846 (1103)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i-- 846 (1103)
-|....+. ........++++|++.+.++..+ ..-.+|....+....+........
T Consensus 233 -----tW~~~~~~----------p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~ 297 (737)
T 2cn3_A 233 -----TWKAVPGQ----------PKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSS 297 (737)
T ss_dssp -----CCEECTTC----------CCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTST
T ss_pred -----ceEECCCC----------CCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCc
Q ss_pred ------eEEEEcCCCCCEEEEEeCC----CeEEEEEcCCceeEEEe----------------------------------
Q 001310 847 ------TSLAFNPHDNNVIAIGMDD----STILIYNARSSEVISKL---------------------------------- 882 (1103)
Q Consensus 847 ------~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~~~~l---------------------------------- 882 (1103)
..++++|.+...|++++.+ ..-..-..+.|+.-..+
T Consensus 298 ~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~l~~S~DgG~tW~~~~~~~g~p~~~~~~~~d~~~~p~~~~~~~~~~~~~ 377 (737)
T 2cn3_A 298 DNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEYIFRSTDGGATWKNIWEWGMYPERILHYEIDISAAPWLDWGTEKQLPEI 377 (737)
T ss_dssp TCCSEEEEEEECTTCTTCEEEEEECCCSSCCCEEEESSTTSSCEESEEECSTTCEEESEEEECTTSGGGGTTCCCCTTCC
T ss_pred ccccccccEEEcCCCCCEEEEEecccCCCCccEEEeCCCCccccchhhccCCCcccceeecCCCCCceeccCCccccccc
Q ss_pred -ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC----CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC
Q 001310 883 -EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1103)
Q Consensus 883 -~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~ 957 (1103)
..+.-.+.+|++.|...--+..+.++.|..-.-.. ........+..-..... +..+.+.|.+..|+.+...
T Consensus 378 ~~~~~~~~~~l~idp~~~~~~~~g~~~g~~~s~d~g~w~~~~~~~~~~~~~g~~~~~----~~~~~~~p~~~~l~~~~~d 453 (737)
T 2cn3_A 378 NPKLGWMIGDIEIDPFNSDRMMYVTGATIYGCDNLTDWDRGGKVKIEVKATGIEECA----VLDLVSPPEGAPLVSAVGD 453 (737)
T ss_dssp SSCSCSCCCCEEECTTCTTCEEEECSSCEEEESCGGGGGGTCCEEEEECCTTCBCCB----EEEEECCSSSCSEEEEETT
T ss_pred cccCCcccccEEECCCCCCcEEEeCCCeEEeecCCCccccCCceeEEEcCCCceeee----eeeEEcCCCCCeeEEEEec
Q ss_pred eEEEEECCCceEEEEeeCCCCcCeEEEEEccC--CCEEEEEecCCc---EEEEeCCCceeEEe--eccccccCCCCCCCc
Q 001310 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCD--CRMVFTSFVDGT---LSIHEASNLEVQCR--ILSTAYLRPTTSHDK 1030 (1103)
Q Consensus 958 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~d--g~~l~t~~~dg~---v~vWd~~~~~~~~~--~~~~~~~~~~~~~~~ 1030 (1103)
.=.++..+-.+...............++|..+ ...++++..|+. ..++..+.|+.-.. ..+.......
T Consensus 454 ~g~~~~~d~~~~~~~~~~~~~~~~~~i~~ag~~~~~~v~vG~~dg~~~~~i~~S~DgG~tW~~~~~~p~~~~~~~----- 528 (737)
T 2cn3_A 454 LVGFVHDDLKVGPKKMHVPSYSSGTGIDYAELVPNFMALVAKADLYDVKKISFSYDGGRNWFQPPNEAPNSVGGG----- 528 (737)
T ss_dssp TBCCEESSTTSCCSSCSCTTCSEEEEEEEETTEEEEEEEEEECSSCCCCSEEEESSTTSSCBCCSCCCSCSSCCS-----
T ss_pred cCCeEEcccccCCccccCCccccccceeecccCCCeEEEEECcCCCCCceEEEeCCCCCCCcccccCCccccCCc-----
Q ss_pred eeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCCCCccCC
Q 001310 1031 ILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1082 (1103)
Q Consensus 1031 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~w~~~~ 1082 (1103)
.+..+|++.+.+.+++.++ ++.-...+.+|...+
T Consensus 529 ---------------~i~~~~~~~~~~~a~~~~~---v~~S~D~G~tW~~~~ 562 (737)
T 2cn3_A 529 ---------------SVAVAADAKSVIWTPENAS---PAVTTDNGNSWKVCT 562 (737)
T ss_dssp ---------------EEEECTTSSCEEEECTTSC---CEEESSTTSSCEECB
T ss_pred ---------------eEEEEeCCCCEEEEeCCCe---EEEECCCCCCCccCC
No 396
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.33 E-value=30 Score=27.59 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001310 1 MSKLNKDLVFLILQFLNEE 19 (1103)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (1103)
|...+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6677899999999999874
No 397
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.24 E-value=1.2e+02 Score=28.44 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=57.3
Q ss_pred HHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhcc
Q 001310 51 EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELL 130 (1103)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 130 (1103)
+.|+..+.++..-.+ .+...+.-+|.+|...=.+++|++.+|..+|+..+..-....+ .=..|..++...+. .++.+
T Consensus 95 ESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~-lr~kL~~II~~Kd~-~H~~l 171 (211)
T 3bqo_A 95 ESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP-FKSKLLMIISQKDT-FHSFF 171 (211)
T ss_dssp HHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT-THHHHHHHHHTTCT-TCHHH
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH-HHHHHHHHHHccCC-CcHHH
Confidence 566777777644333 4455688899999999999999999999999997775543333 22346666655442 23333
Q ss_pred ccccCCChHHHHHHHHHHHHhhh
Q 001310 131 SKYYGDALSARKNMMLELKQIIE 153 (1103)
Q Consensus 131 ~~~~~~~~~~r~~l~~~l~~~~~ 153 (1103)
.++ +...+++.+..++.
T Consensus 172 qnF------Sy~~~~~kik~fve 188 (211)
T 3bqo_A 172 QHF------SYNHMMEKIKSYVN 188 (211)
T ss_dssp HHS------CHHHHHHHHHHHHH
T ss_pred HHc------cHHHHHHHHHHHHH
Confidence 332 34455566555544
No 398
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=29.12 E-value=5.3e+02 Score=27.16 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=35.8
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-------CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310 587 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1103)
Q Consensus 587 ~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~ 651 (1103)
-|+...+++.+.+|.|+--.+.. ++-+..+....+ ..+..+........++..+..|.+.-+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 46778899999999998765432 111222222221 23444444445556666677776655543
No 399
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.76 E-value=1.6e+02 Score=25.49 Aligned_cols=13 Identities=15% Similarity=-0.092 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHh
Q 001310 87 GHDIAKALNILKK 99 (1103)
Q Consensus 87 ~~~~~~a~~~l~~ 99 (1103)
.|++++|+..+++
T Consensus 99 ~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 99 LGDLDGAESGFYS 111 (142)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4555555555544
No 400
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.27 E-value=52 Score=41.59 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=34.1
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeecccc
Q 001310 980 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus 980 ~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
.+.+++..++..+++|-+.|+++|||++.++.++.+.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 44556677888999999999999999999999988766443
No 401
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=26.96 E-value=2.7e+02 Score=22.98 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=17.3
Q ss_pred eEEEEecCCCEEEEEcCCeEEEEEcCC
Q 001310 806 PCFALSKNDAYLFSASGGVISLYIVMT 832 (1103)
Q Consensus 806 ~~l~~s~d~~~l~~~~dg~i~iwd~~~ 832 (1103)
..+.+..||.+++...++. .+|...+
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEEeCCccEEEECCCcE-EEEEecC
Confidence 3577888888887755554 3676543
No 402
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=26.14 E-value=5.4e+02 Score=26.27 Aligned_cols=199 Identities=10% Similarity=0.134 Sum_probs=103.6
Q ss_pred cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCC
Q 001310 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 823 (1103)
Q Consensus 744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg 823 (1103)
++...+++.+.+|.++--.+..-..... .+.-.....+. ....-+..+..+.....++....|
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~---------------~~~g~~~~~lk--e~D~l~~~~~~~~~~~ll~~T~~G 68 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT---------------GGKGLSSFDLN--DGDEIVIALCVNTHDYLFMISNEG 68 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS---------------SCCCEECCCCC--TTCCEEEEEEEETTCEEEEEETTS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc---------------CCCCceecccC--CCCEEEEEEEECCCCEEEEEECCC
Confidence 3556688888899888655432211000 00001111121 123333333344444555555578
Q ss_pred eEEEEEcCCc---------eee---EEecCCCCCeeEEEEcCC--CCCEEEEEeCCCeEEEEEcCC-------ceeEEEe
Q 001310 824 VISLYIVMTF---------KTI---LTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-------SEVISKL 882 (1103)
Q Consensus 824 ~i~iwd~~~~---------~~~---~~~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~-------~~~~~~l 882 (1103)
.++-+....- ..+ ..+. ....|.++...++ +..+|+..+..|.++...+.. |...-.+
T Consensus 69 ~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L 147 (312)
T 1suu_A 69 KLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL 147 (312)
T ss_dssp EEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC
T ss_pred eEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec
Confidence 8666655321 111 1122 2334555543321 356788899999999888753 2222334
Q ss_pred ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee-----eeeeeecCCCcccCCCCceEEEEcCCCCEE-EEEeC
Q 001310 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRF-LLVHE 956 (1103)
Q Consensus 883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l-~~~~d 956 (1103)
.. .+.+..+....+...++..+.+|.+..+..+.-... -...+....+ ..|.++..-+++..+ +++..
T Consensus 148 ~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 148 ND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp CT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETT
T ss_pred CC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECC
Confidence 43 456776666655677888999999999988651111 1112222221 245666555455544 44778
Q ss_pred CeEEEEECCC
Q 001310 957 THLAIYEAEE 966 (1103)
Q Consensus 957 ~~v~iwd~~~ 966 (1103)
|.....++..
T Consensus 222 G~~kr~~~~e 231 (312)
T 1suu_A 222 GYGKRLNMSK 231 (312)
T ss_dssp SEEEEEEGGG
T ss_pred CceEEEEHHH
Confidence 8888887753
No 403
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=25.80 E-value=74 Score=25.68 Aligned_cols=55 Identities=7% Similarity=-0.051 Sum_probs=28.2
Q ss_pred HhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcC-CCHHHHHHHHHhhcc
Q 001310 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG-HDIAKALNILKKDLK 102 (1103)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~-~~~~~a~~~l~~~l~ 102 (1103)
....|+|++|+..+............ ..++...-.=++.. |++++|+.++++-+.
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCTTC----HHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHccCHHHHHHHHHHHHHhCcccch----HHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 34568888888887654222211000 11111111112456 788888888877544
No 404
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.77 E-value=33 Score=24.20 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHhhhhc
Q 001310 4 LNKDLVFLILQFLNEE 19 (1103)
Q Consensus 4 ~~~e~~rli~q~L~~~ 19 (1103)
+++++++.|+|||+..
T Consensus 1 ~~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 1 MKKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 3678999999999864
No 405
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=25.36 E-value=1.8e+02 Score=28.52 Aligned_cols=110 Identities=8% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhh
Q 001310 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1103)
Q Consensus 6 ~e~~rli~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q 79 (1103)
.|+.....+.+...| |.++...+++--....+ ...-.-....|++++|+.++......+.+.......+...=.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344344444444444 77777766653332211 222235566799999988887642222211110011222222
Q ss_pred hhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhc
Q 001310 80 NFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1103)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1103)
.| ...|++++|+..+++-+.- .+.+...+..|+.+.
T Consensus 83 ~~---~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 83 IL---MKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSYF 118 (272)
T ss_dssp HH---HHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHH
T ss_pred HH---HHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHH
Confidence 22 3468888888888875442 222334444454443
No 406
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.77 E-value=41 Score=19.25 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHhhhhc
Q 001310 4 LNKDLVFLILQFLNEE 19 (1103)
Q Consensus 4 ~~~e~~rli~q~L~~~ 19 (1103)
+-+||++||-||-+..
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999886654
No 407
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.23 E-value=3.4e+02 Score=27.25 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHh
Q 001310 87 GHDIAKALNILKK 99 (1103)
Q Consensus 87 ~~~~~~a~~~l~~ 99 (1103)
.|++++|+..|++
T Consensus 114 ~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 114 DQNPDAALRTLHQ 126 (291)
T ss_dssp TTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 4555555555544
No 408
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=23.81 E-value=65 Score=24.92 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChh
Q 001310 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1103)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~-~~s~~~L~~Es~~~~~ 37 (1103)
+.....+...|+..|.+.|| +.+...+-++-|++.+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34567799999999999997 4556666666666554
No 409
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=23.25 E-value=2.1e+02 Score=25.44 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCChh-H----HHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhh
Q 001310 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD-M----KFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1103)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~ 80 (1103)
++|-.-|.++|.+-+.-+-+ -.+..+ . ..=......|++++|+..+.....+++.. .. +.+. .=..
T Consensus 9 ~~~~~~l~~~~~~~~~l~~a------l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~-~~~~-lg~~ 79 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDI------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VD-YIMG-LAAI 79 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGG------CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH------hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHH-HHHH
Confidence 34566667777766532211 122222 1 11123445678888877776543332221 10 1111 1122
Q ss_pred hhhhhcCCCHHHHHHHHHhh--cccc
Q 001310 81 FFEALDGHDIAKALNILKKD--LKDF 104 (1103)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~ 104 (1103)
| ...|++++|+.++++- +.|-
T Consensus 80 ~---~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 80 Y---QIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp H---HHTTCHHHHHHHHHHHHHHSSS
T ss_pred H---HHHccHHHHHHHHHHHHhhCCC
Confidence 2 3467777787777774 4443
No 410
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.74 E-value=2.1e+02 Score=23.85 Aligned_cols=82 Identities=7% Similarity=0.007 Sum_probs=43.5
Q ss_pred hhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCC
Q 001310 15 FLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHD 89 (1103)
Q Consensus 15 ~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~ 89 (1103)
+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.....++... . -.+...=..| ...|+
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~--~~~~~lg~~~---~~~~~ 87 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-V--RAYIRKATAQ---IAVKE 87 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H--HHHHHHHHHH---HHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-H--HHHHHHHHHH---HHHhC
Confidence 34444477777776653333222 111123345689999988887643332221 1 1122222222 34688
Q ss_pred HHHHHHHHHhhcc
Q 001310 90 IAKALNILKKDLK 102 (1103)
Q Consensus 90 ~~~a~~~l~~~l~ 102 (1103)
+++|+..+++-+.
T Consensus 88 ~~~A~~~~~~al~ 100 (126)
T 3upv_A 88 YASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999988887443
No 411
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=22.17 E-value=1.8e+02 Score=25.97 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhh
Q 001310 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1103)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~ 80 (1103)
+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....++... . ..+..+=..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~--~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-S--KAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-H--HHHHHHHHH
Confidence 33344444444444 77777766653333222 111133445789999988887642332221 1 112222222
Q ss_pred hhhhhcCCCHHHHHHHHHhhc
Q 001310 81 FFEALDGHDIAKALNILKKDL 101 (1103)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l 101 (1103)
| ...|++++|+..+++-+
T Consensus 89 ~---~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 R---FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp H---HHTTCHHHHHHHHHHHH
T ss_pred H---HHccCHHHHHHHHHHHH
Confidence 2 34688888888888743
No 412
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=22.12 E-value=52 Score=32.24 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCChhHHHHHHHhcCcC
Q 001310 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK 49 (1103)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Es~~~~~~~~~~~~i~~g~ 49 (1103)
+|+-+++||++.|+. +-|-+-+|-.-++..+++.+..|.
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~ 78 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEH 78 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCC
Confidence 677788999999862 344444454446888988887763
No 413
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=21.76 E-value=3.2e+02 Score=22.47 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhh
Q 001310 8 LVFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFF 82 (1103)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~ 82 (1103)
...+-..+++..-|.++...+++-.....+ ...=.-....|+|++|+.++.......... . .+.+. +=+.|
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~~-la~~~- 94 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-I-KGYTR-KAAAL- 94 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-H-HHHHH-HHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-h-HHHHH-HHHHH-
Confidence 344444445555588888888775554332 111233456799999999887642222211 1 11111 11222
Q ss_pred hhhcCCCHHHHHHHHHhhcc
Q 001310 83 EALDGHDIAKALNILKKDLK 102 (1103)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~ 102 (1103)
...|++++|+..+++-+.
T Consensus 95 --~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 --EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHTTCHHHHHHHHHHHHH
T ss_pred --HHHhhHHHHHHHHHHHHH
Confidence 357889999999987543
No 414
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.56 E-value=1.3e+02 Score=26.23 Aligned_cols=24 Identities=29% Similarity=0.086 Sum_probs=18.1
Q ss_pred hhhhhhcCCCHHHHHHHHHhhccc
Q 001310 80 NFFEALDGHDIAKALNILKKDLKD 103 (1103)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~ 103 (1103)
..-|++..|+..+|.+++++--.|
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCC
Confidence 345777889999999999874334
No 415
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=21.47 E-value=10 Score=31.69 Aligned_cols=32 Identities=6% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001310 28 LERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1103)
Q Consensus 28 L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1103)
+-+|||+++++.-+-..|. |+|+++...++.+
T Consensus 41 vi~~sGL~y~~~pmgT~IE-Ge~devm~vvk~~ 72 (106)
T 1vk8_A 41 KISSWGMKYEVGPSNTTVE-GEFEEIMDRVKEL 72 (106)
T ss_dssp HHHTTCSCEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 3458999998777666665 9999999988654
No 416
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.45 E-value=3.5e+02 Score=22.85 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=9.3
Q ss_pred hcCcCHHHHHHHhcc
Q 001310 45 ILDGKWEDVEQYLSS 59 (1103)
Q Consensus 45 i~~g~w~~~~~~l~~ 59 (1103)
...|+|++|+..+..
T Consensus 76 ~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 76 LKLEDYDKAETEASK 90 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHH
Confidence 445677777666654
No 417
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=21.23 E-value=2e+02 Score=24.21 Aligned_cols=90 Identities=12% Similarity=-0.095 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhh
Q 001310 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1103)
Q Consensus 6 ~e~~rli~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q 79 (1103)
.+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....+.... .. +.+. .-.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~~~~-l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VK-AHFF-LGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HH-HHHH-HHH
Confidence 334444444444444 77777766653322222 111123445799999998887643332221 11 2221 222
Q ss_pred hhhhhhcCCCHHHHHHHHHhhc
Q 001310 80 NFFEALDGHDIAKALNILKKDL 101 (1103)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l 101 (1103)
.| +..|++.+|+..+++-+
T Consensus 86 ~~---~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQ---LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HH---HHTTCHHHHHHHHHHHH
T ss_pred HH---HHHhhHHHHHHHHHHHH
Confidence 22 34688999998888743
No 418
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.81 E-value=1.3e+02 Score=27.12 Aligned_cols=24 Identities=29% Similarity=0.086 Sum_probs=18.1
Q ss_pred hhhhhhcCCCHHHHHHHHHhhccc
Q 001310 80 NFFEALDGHDIAKALNILKKDLKD 103 (1103)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~ 103 (1103)
..-|++..++..+|.+++++--.|
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCC
Confidence 445777889999999999874334
No 419
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=20.60 E-value=1.1e+02 Score=22.69 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCC
Q 001310 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34 (1103)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~ 34 (1103)
.++.+.|||+--|.-=||.+.|..|-.+-+.
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 4677999999999999999999999876664
Done!