BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001311
(1102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 157 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 205 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 196 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 254 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 300 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 159 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 207 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 198 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 256 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 302 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 152 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 200 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 191 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 249 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 295 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 136 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 184 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 217
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 175 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 233 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 279 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 131 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 179 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 170 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 228 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 274 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 140 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 188 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 221
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 179 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 237 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 283 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 918 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 971
+ TG +T A SD H ++ L+V ++ I++T
Sbjct: 134 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
+C+K + + + P++ FS + + + A LD T+
Sbjct: 181 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 173 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 231 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 277 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 503
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS 908
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 385 RNFKVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE 442
+ ++WD+ G C L A DP V+ V ++ DGSL + + +I+ G
Sbjct: 132 ESVRIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 443 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502
++ ++ D V+ + FS K + T D T+K+WD + G + GH+ Y
Sbjct: 187 LKTLIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 503 V 503
+
Sbjct: 243 I 243
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS 908
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004
C+K + + + P++ FS + + + A LD
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 920
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 448 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 495
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 496 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 529
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
SV V +SPDG A V++++ +G ++ Q L H VN +AF P+ Q
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
G + +T G GV F +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 590 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 632
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 36/224 (16%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 399
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLW--- 453
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
G+ T+ + R V F +A DD ++K W
Sbjct: 454 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 494
Query: 590 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 632
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 495 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 39/246 (15%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 71
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
+ + DDKT+K+W+ NG GH + V V + Q I S + D +K W +
Sbjct: 72 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 128
Query: 530 -NLGSRVDYEAPGRWCTTMAYSADGT---------------------RTYQGFRKRSLGV 567
L + + W +A+S DG +T G GV
Sbjct: 129 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 626
F +A DD ++K W+ + QLL ++ G +S R + F+ DG +A +++
Sbjct: 187 A-FSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASD 241
Query: 627 DNGIKI 632
D +K+
Sbjct: 242 DKTVKL 247
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 153
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 154 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW--- 207
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
G+ T+ + R V F +A DD ++K W
Sbjct: 208 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 248
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
+ + QLL ++ G + + F DG +A +++D +K+
Sbjct: 249 NRNG-QLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 522
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 443 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502
V++ ++AH V +AFS P+ Q + + DDKT+K+W+ NG GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 62
Query: 503 VCPHHKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGT------ 554
V + Q I S + D +K W + L + + + R +A+S DG
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQTIASAS 117
Query: 555 ---------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 599
+T G GV F +A DD ++K W+ + QLL +
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNG-QLLQT 175
Query: 600 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
+ G + + F+ DG +A +++D +K+
Sbjct: 176 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D+ IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
+G + LQ TG + + + V F D + + + ++
Sbjct: 496 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Query: 979 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1010
SS + FS D Q + + D TV ++
Sbjct: 547 GHSSS--VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW- 977
+G + LQ TG H ++ + I + + VK W
Sbjct: 250 RNG------QLLQTLTG-------------HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 978 -------VPRESSAPITHATFSCDSQLVYACFLDATVCVF 1010
S+ + FS D Q + + D TV ++
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
+G + LQ TG + + V F D + + + ++
Sbjct: 168 RNG------QLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 218
Query: 979 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC------RINPSAYLPAG 1030
SS + FS D Q + + D TV +++ L+ +N A+ P G
Sbjct: 219 GHSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
+G + LQ TG + + + V F D + + + ++
Sbjct: 455 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 979 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1010
SS + FS D Q + + D TV ++
Sbjct: 506 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
+G + LQ TG + + V F D + + + ++
Sbjct: 414 RNG------QLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 979 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1010
SS + FS D Q + + D TV ++
Sbjct: 465 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 494
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
+G + LQ TG + + + V F D + + + ++
Sbjct: 86 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 979 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1010
SS + FS D Q + + D TV ++
Sbjct: 137 GHSSS--VWGVAFSPDGQTIASASDDKTVKLW 166
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 919 SDGWEKQKNRFLQIPTGRTPT 939
+G + LQ TG + +
Sbjct: 332 RNG------QHLQTLTGHSSS 346
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D IA DD +++++N +++ L GHS + G+AFS + S+ D + +W+
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
+G + LQ TG + + + V F D + + + ++
Sbjct: 373 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 979 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1010
SS + FS D Q + + D TV ++
Sbjct: 424 GHSSS--VWGVAFSPDDQTIASASDDKTVKLW 453
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 919 SDGWEKQK 926
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 514
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTALDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 919 SDGWEKQK 926
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 514
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTALDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 545
+NI++I + + D + W + G DY E P G +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 546 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 584
S G G +L V +D + R ++A D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 585 SIKFWDMDSVQLLTSIDADGGLPASPRI 612
+I+ WD+++ +L+ ++ L R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 508
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKENIQFIFSTALDGKIKAW 526
+NI++I + + D + W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 508
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
V++ D T+ VWD YI GH +YS H+ + S + D I+ W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER--KRCISASXDTTIRIWDLE 340
Query: 530 N 530
N
Sbjct: 341 N 341
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
D+ KT + N+ +DFHP + +L G + LW ++ +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 514
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTALDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
D+ KT + N+ +DFHP + +L G + +W ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 514
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTALDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 385 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 443
R+ VWD+ + + L+ LV +VN V D A +++++ + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 444 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 503
R ++ H G+ + + + V++ D TI++WD GA + EGHE V +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 563
+K I S A DGKIK W +L + +D AP GT + +
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 564 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 591
S V + + + +++ D +I WD
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 470 VITCGDDKTIKVWDA---TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
++TC D++I VWD T+ + + GH A V V + ++I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVW 281
Query: 527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS 585
+ + RT G KR + +Q+ ++R + +G D +
Sbjct: 282 --------------------NTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNT 317
Query: 586 IKFWDMDSVQLLTSIDADGGLPASPRIRFN 615
I+ WD++ L ++ L IRF+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRC--IRFD 345
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 36/199 (18%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW------LYD 529
D TIK+WD + I GH V +C + E + I + + D ++ W + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLN 207
Query: 530 NLGSRVDYEAPGRW-------CTT--------MAYSADGT--RTYQGFRKRSLGVVQFDT 572
L + R+ C+ MA D T R G R ++ VV FD
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD- 265
Query: 573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
++A D +IK W+ + + + +++ A + R L+ ++DN I++
Sbjct: 266 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRL 320
Query: 633 LATSDG--IRLLRTFENLA 649
G +R+L E L
Sbjct: 321 WDIECGACLRVLEGHEELV 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 528
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 584
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 585 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 622
SIK WD++ Q + S + P + ++ DG L
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 623 VSTNDNGIKILATSDGIR 640
DN +++ + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 377 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 432
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 123 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 174
Query: 433 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 175 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 229
Query: 493 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 539
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 283
Query: 540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569
P CT++A+SADG + G+ + V Q
Sbjct: 284 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 528
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 584
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 585 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 622
SIK WD++ Q + S + P + ++ DG L
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 623 VSTNDNGIKILATSDGIR 640
DN +++ + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 377 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 432
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 146 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 197
Query: 433 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 198 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 252
Query: 493 FEGHEA--------PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 539
+G + Y +C +I+ L+GKI + D L V E
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 306
Query: 540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569
P CT++A+SADG + G+ + V Q
Sbjct: 307 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 508
+ H V + F HP + +++ +D TIKVWD G + +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 568
+ + + S + D IK W + + RT G ++ V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 628
+ ++A D +IK W++ + + + G +R N+DG L+A +ND
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 629 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 664
++ ++AT + LR ++ S E+S +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920
+++ +D++I++++ + + LKGH+ + ++F H+ +L S AD + +W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 921 GWE 923
G+E
Sbjct: 181 GFE 183
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530
DKTIK+WD + G GH+ V V H +FI S A D ++ W Y N
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKN 369
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
+++C DDKT++VWD N HE V S+ H + ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 915 CVW 917
VW
Sbjct: 343 NVW 345
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/503 (17%), Positives = 175/503 (34%), Gaps = 74/503 (14%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
L + H V FS ++ + +CG DKT++V+ A G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566
+ +FI + ++D K+K W + + + TY ++ +
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--------------------NSMTGELVHTYDEHSEQ-VN 709
Query: 567 VVQFDTTKNRFLAA--GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 624
F + + L A D +K WD++ + ++ G + RF+ D LLA
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDKLLASC 767
Query: 625 TNDNGIKIL-ATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXXXXXXXXXX 683
+ D +K+ ATS R + + E+ + +
Sbjct: 768 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 684 XXM-VSIPGMNGDVRS-------LADVKPR----ITEESNDKSKVWKLTELSEPNQCRSL 731
+ G+ G++ + D P+ + S ++W S+ CR
Sbjct: 828 FLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG- 886
Query: 732 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 791
+ + ++F+ G++ L + + LW+ ++ +NS+ V +
Sbjct: 887 ------HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 792 SGIMMTNDV------------TDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNXXXXX 838
++ + + D E V C LS + Y+ G I +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 839 XXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 898
+ +I+ DD+ IQ++N ++D+ L+GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLIS-SSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL 1058
Query: 899 SHALNVLVSSGADSQLCVWSSDG 921
+S+L WS DG
Sbjct: 1059 L----------KNSRLLSWSFDG 1071
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
+D IA D ++Q++ E ++K H + AFS + + D ++ +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 918 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECV 974
+S E + T + Q + F H L+ + L +++ + EC
Sbjct: 691 NSMTGE-------LVHTYDEHSEQVNC-CHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 975 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1027
+S + H FS D +L+ +C D T+ ++ A + R IN +
Sbjct: 743 NTMFGHTNS--VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475
+SP L VA S++ V++++ +V + H+ V+ + FS +T D
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVA---DCRGHLSWVHGVMFSPDGSSF--LTSSD 908
Query: 476 DKTIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525
D+TI++W+ K +F+ +E V +V H +Q I +G+
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLI-----NGRT-- 959
Query: 526 WLYDNLGSRVDY--EAPGRWCTT---MAYSADG-------------TRTYQGF--RKRSL 565
++DY EA C + Y A G R +Q K+++
Sbjct: 960 -------GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 625
+QF + +++ DD I+ W+ QL I G R K+ LL+ S
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNW---QLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 626 NDNGIKI 632
D +K+
Sbjct: 1070 -DGTVKV 1075
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 806 EEAVPCFALSKNDSYVMSAS-GGKISLFNXXX-XXXXXXXXXXXXXXXXXXXHPQDNNII 863
E+ V C A S +D ++ + S K+ ++N + + ++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 923
A G D ++++++ E ++ + GH+ + FS +L S AD L +W +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 924 KQKN 927
++K+
Sbjct: 783 ERKS 786
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
D T+KVW+ G K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSV 594
+ A+S D T LA GDD I+ W++ +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST----------------------LLATGDDNGEIRIWNVSNG 1165
Query: 595 QLL 597
+LL
Sbjct: 1166 ELL 1168
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922
IA G ++ +I+I + + + H K + + F+ L+SS D+++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 923 EKQKNRFLQ 931
+ K FL+
Sbjct: 1039 QLDKCIFLR 1047
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
V V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 527
++ D+TIK+W+ K I EG E + C N I S + D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 574
N R + +T+A S DG+ G + + + K
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 575 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 603
NR+ L A + IK WD++S ++ + D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--PHHK 508
H G V+ +A S P+ LC + G D + +WD G K Y E + ++++C P+
Sbjct: 559 GHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPN-- 613
Query: 509 ENIQFIFSTALDGKIKAW------LYDNLGSRVDYEAPGR---------------WCTTM 547
++ A + IK W + ++L +VD +A +CT++
Sbjct: 614 ---RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKVIYCTSL 668
Query: 548 AYSADGTRTYQGF 560
+SADG+ + G+
Sbjct: 669 NWSADGSTLFSGY 681
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
D +++WD G F GH V SV +N Q I S + D IK W + LG
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGE-- 504
Query: 536 DYEAPGRWCT-TMAYSADGTRTYQGFRKRSLGVVQF--DTTKNRFLAAGDDFSIKFWDMD 592
C T++ +G R + + V+F +T + ++A D ++K W++
Sbjct: 505 --------CKYTISEGGEGHRDW-------VSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 641
+ +L +++ G ++ + + DG L A D + + ++G +L
Sbjct: 550 NCKLRSTLAGHTGYVST--VAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
D +++++N+ +++S L GH+ ++ +A S ++ S G D + +W
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 885 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 940
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 236
Query: 941 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 237 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 291
Query: 1001 CFL------DATVCVFSAANLKLR 1018
F+ D TV ++ NLKL+
Sbjct: 292 EFILATGSADKTVALWDLRNLKLK 315
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 464 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 516
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 251
Query: 517 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 562
A D K+ W N + VD C + SAD T R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 563 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 607
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 915 CVW 917
VW
Sbjct: 349 HVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 885 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 940
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 234
Query: 941 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 235 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 289
Query: 1001 CFL------DATVCVFSAANLKLR 1018
F+ D TV ++ NLKL+
Sbjct: 290 EFILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 464 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 516
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 249
Query: 517 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 562
A D K+ W N + VD C + SAD T R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 563 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 607
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 915 CVW 917
VW
Sbjct: 347 HVW 349
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 885 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 940
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 238
Query: 941 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 239 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 293
Query: 1001 CFL------DATVCVFSAANLKLR 1018
F+ D TV ++ NLKL+
Sbjct: 294 EFILATGSADKTVALWDLRNLKLK 317
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 464 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 516
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 253
Query: 517 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 562
A D K+ W N + VD C + SAD T R
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 563 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 607
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 915 CVW 917
VW
Sbjct: 351 HVW 353
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 397
++ R N SS ++ F+ Q +L G N G+I +WD+ C+
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 398 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 450
PG SV+ VI W+ +F A S + I+ EV HL
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 451 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 502
+ G+ + HP V T +D +I +WD N Q + +GH+ + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 544
+ H++ + S+ D + W ++ + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 858 QDNNIIAIGMDDSSIQIY--NVRVDEVKS--KLKGHSKRITGLAFSHAL-NVLVSSGADS 912
+N IIA +D+ S+++Y N + + S + HS + + F+ NVL S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 913 QLCVWSSDGWEKQKNRFLQIPTGRTP 938
++ +W N+ + P+ TP
Sbjct: 137 EIFIW-------DMNKCTESPSNYTP 155
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 856 HPQDNNIIAIGM---DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHA-LNVLVSSG 909
HP+++ +A +D SI I+++R +++ +GH K I L + H ++L+SSG
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 910 ADSQLCVWSSDGWEK 924
D+ + +W+ + E+
Sbjct: 283 RDNTVLLWNPESAEQ 297
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 504
H + H V+D+A S N I+ DKT+++WD G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 505 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 550
P +++ I S + +IK W L + S + E W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D +++++++R + GH + +AFS ++S+GA+ ++ +W+
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 588
L + + A+S DG LA GDD I+
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 589 WDMDSVQLLTS 599
W++ QLL S
Sbjct: 1161 WNVSDGQLLHS 1171
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 678
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 509
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1008 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1063
Query: 510 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 567
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1064 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1106
Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1107 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1155
Query: 628 NGIKILATSDG 638
I+I SDG
Sbjct: 1156 GEIRIWNVSDG 1166
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 806 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 863
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 786
Query: 536 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 787 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 840
Query: 580 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 615
A + ++ W++DS L D G L + F+
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 898
Query: 616 KDGCLLAVSTNDNGIKILAT 635
DG +++D I++ T
Sbjct: 899 PDGSSFLTASDDQTIRVWET 918
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 918 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 969
S TG+ + Q F H L+ ++ L +++
Sbjct: 692 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1027
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 739 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 923 EKQKNRFLQ 931
+ FLQ
Sbjct: 1040 QTGDYVFLQ 1048
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 588
L + + A+S DG LA GDD I+
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 589 WDMDSVQLLTS 599
W++ QLL S
Sbjct: 1154 WNVSDGQLLHS 1164
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 671
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 509
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1001 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1056
Query: 510 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 567
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1057 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1099
Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1100 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1148
Query: 628 NGIKILATSDG 638
I+I SDG
Sbjct: 1149 GEIRIWNVSDG 1159
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 806 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 863
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 779
Query: 536 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 833
Query: 580 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 615
A + ++ W++DS L D G L + F+
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 891
Query: 616 KDGCLLAVSTNDNGIKILAT 635
DG +++D I++ T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 918 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 969
S TG+ + Q F H L+ ++ L +++
Sbjct: 685 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1027
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 732 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 923 EKQKNRFLQ 931
+ FLQ
Sbjct: 1033 QTGDYVFLQ 1041
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 915 CVW 917
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 470 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 522
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 523 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 568
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 569 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 607
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRW 89
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 476
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 477 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 523
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 915 CVW 917
VW
Sbjct: 345 NVW 347
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 470 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 522
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 523 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 568
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 569 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 607
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 495 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552
GH APV + CPH N I S + D + W + G + P
Sbjct: 79 GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 612
T +G KR V T +N L+AG D I WD+ + + ++ D +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 613 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662
+++DG L+ S D ++++ G + + R E ++P
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 908
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 909 GADSQLCVW 917
G D+ + VW
Sbjct: 151 GCDNVILVW 159
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 107/303 (35%), Gaps = 73/303 (24%)
Query: 385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 444
RN VW+ A S + A D V V WS DGS V +V IY ++R
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 445 QHLEIDAHVG-----------GVNDIAFSH-----PNKQLCVI----------------- 471
A VG G A H N Q+ +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 472 ---TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAW 526
+ G+D +++WDA + ++ H A V +V CP + N+ +D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 527 LYDNLGSRVDYEAPGRWCTTMAYS--ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 584
G+RV+ G T++ +S + + GF D
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF---------------------PDN 327
Query: 585 SIKFWDMDSVQLLTSIDADGGLPA-SPRIRFNK---DGCLLAVSTNDNGIKILATSDGIR 640
++ W S L +D +PA R+ ++ DG +L+ + +D +K DG
Sbjct: 328 NLSIWSYSSSGLTKQVD----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383
Query: 641 LLR 643
+ R
Sbjct: 384 VKR 386
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543
+ + S + DGK+ W +N GRW
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN----------GRW 91
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 476
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 23 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 477 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 523
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 127
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 550
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRWSQIAVHA 96
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 476
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 477 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 523
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 463 HPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKENIQFIFSTALDG 521
HPN+Q V T G D + +WD G + + HEA ++ V H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 522 KIKAW 526
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 507
+AH ++D + K++ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN----------GRW 89
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 476
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRMATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 477 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 523
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--DGKV 125
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 69/294 (23%)
Query: 372 GLWEVGSRERLVL-----RNFKVW--DLGACSMPL--QAALVKDPGVSVNRVI-WSPDGS 421
G+W R+ +++ R KVW + G C L + V+ + RV+ S D +
Sbjct: 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481
L +++ G + + HV V + + V++ D +KV
Sbjct: 221 L----------RVWDIETGQCLHVLM---GHVAAVRCVQYDGRR----VVSGAYDFMVKV 263
Query: 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQF----IFSTALDGKIKAWLYDNLGSRVDY 537
WD + +GH VYS +QF + S +LD I+ W D
Sbjct: 264 WDPETETCLHTLQGHTNRVYS--------LQFDGIHVVSGSLDTSIRVW---------DV 306
Query: 538 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQL 596
E + + T G + + G+ K+ L +G+ D ++K WD+ + Q
Sbjct: 307 E-----------TGNCIHTLTGHQSLTSGM----ELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 597 LTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFEN 647
L ++ + A ++FNK+ + S++D +K+ L T + IR L T E+
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 32/148 (21%)
Query: 467 QLC---VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 523
Q C +++ DD T+KVW A G GH V+S ++NI I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV---------------- 567
K W + + G T R G R +L V
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 568 -----VQFDTTKNRFLAAGDDFSIKFWD 590
VQ+D R ++ DF +K WD
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWD 265
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922
+ G D+SI++++V L GH +G+ N+LVS ADS + + W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI-----W 344
Query: 923 EKQKNRFLQIPTGRTPTAQSDTRVQFHQD 951
+ + + LQ G + T +QF+++
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCV 916
+NI+ G DS+++I++++ + L+G H +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 917 W 917
W
Sbjct: 387 W 387
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----IDAHVGGVNDIAFSHPN 465
++ V W P SL V I++ + ++ I+ H V +A+S N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 466 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHKENIQFIFSTALDG 521
+ TC DK++ +W+ ++Y + + H V V H E + + S++ D
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 522 KIKAWL-YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580
++ W YD+ D+E C + +GT F K GV R +
Sbjct: 176 TVRIWKDYDD-----DWE-----CVAVLNGHEGTVWSSDFDKTE-GVF-------RLCSG 217
Query: 581 GDDFSIKFW 589
DD +++ W
Sbjct: 218 SDDSTVRVW 226
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419
+LL G+ + +W ++E R F++ DL A+++ V V WS D
Sbjct: 71 SLLAAGSFDSTVSIW---AKEESADRTFEM-DL--------LAIIEGHENEVKGVAWSND 118
Query: 420 GSLFGVAYSRHIVQIY-SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478
G V I+ + G+E + H V + + HP++ L + DD T
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEALLASSSYDD-T 176
Query: 479 IKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528
+++W + + + GHE V+S E + + S + D ++ W Y
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 857 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 908
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 909 GADSQLCVW 917
G D+ + VW
Sbjct: 151 GXDNVILVW 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 492 IFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 549
+ GH APV + PH N I S + D + W + G + P
Sbjct: 76 LVXGHTAPVLDIAWXPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 609
T +G KR V T +N L+AG D I WD+ + + ++ D
Sbjct: 124 ----VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 610 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662
+ +++DG L+ S D ++++ G + + R E ++P
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 510
H G ++ + F+ NK L ++ DD T+++W NG Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 511 IQFIFSTALDGKIKAW 526
+ S ++DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 764
RI E + K WKLT ++E +L +++ L +++ GN+I+ N
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133
Query: 765 LW 766
LW
Sbjct: 134 LW 135
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 507
+AH ++D + K+ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 550
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN----------GRWSQIAVHA 96
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 31/168 (18%)
Query: 464 PNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAPVYSVCPHHKENIQFIFSTA 518
P+++ +IT D+T +WD T G + IF GH A V S+ + N S +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-SINSLNANMFISGS 225
Query: 519 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578
D ++ W + ++ RTY G + + V+F RF
Sbjct: 226 CDTTVRLW-------------------DLRITSRAVRTYHG-HEGDINSVKFFPDGQRFG 265
Query: 579 AAGDDFSIKFWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLL 621
DD + + +DM + L + D LP + F+ G LL
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 472 TCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
TC D+++K++D NG + I GHE PV+ V H + S + D K+ W +
Sbjct: 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89
Query: 530 NLGSRVDYEAPGR 542
N +E G
Sbjct: 90 NGTWEKSHEHAGH 102
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479
G+ S V+I+ G ++ ++ H G V +A++HP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 480 KVWDATNGA--KQYIFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
+W NG K + GH++ V SVC PH I S+ DG I S +
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--DGAI---------SLL 132
Query: 536 DYEAPGRW 543
Y G+W
Sbjct: 133 TYTGEGQW 140
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--P 505
++ H V+D+A S N ++ D ++++W+ NG QY F GH V SV P
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565
+++ I S D ++ W G T++ +G +
Sbjct: 120 DNRQ----IVSGGRDNALRVW-----------NVKGECMHTLS---------RGAHTDWV 155
Query: 566 GVVQFDTTKNR--FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 623
V+F + + ++ G D +K WD+ + +L+T D G + + DG L A
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--DLKGHTNYVTSVTVSPDGSLCAS 213
Query: 624 STNDNGIKILATSDGIRL 641
S D ++ + G L
Sbjct: 214 SDKDGVARLWDLTKGEAL 231
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921
D S++++N++ + + K GH+K + +AFS +VS G D+ L VW+ G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 473
V +SPD + +++++ G E L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 474 GDDKTIKVWDATNGAKQYIFEGHEAPVYSV 503
G D +KVWD G +GH V SV
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D +I G D+ ++++++ + + LKGH+ +T + S ++ SS D +
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL-- 222
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
W+ K L P Q + F ++ E + IF+ + + +
Sbjct: 223 ---WDLTKGEALSEMAAGAPINQ----ICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 979 PRESSAP-----ITHATFSCDSQLVYACFLDATVCVFSAA 1013
P + +S D +Y+ + D + V+ +
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHH 507
GV +A S P + D+ ++VWD+ G ++ GH+ VYSV
Sbjct: 208 GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV--F 264
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
+ Q + S +LD +K W N ++ D + P S TY G + L V
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--------SGTCEVTYIGHKDFVLSV 316
Query: 568 VQFDTTKN--RFLAAGDDFSIKFWDMDS 593
TT+N L+ D + FWD S
Sbjct: 317 A---TTQNDEYILSGSKDRGVLFWDKKS 341
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 456 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 515
+ + FS K L T +D+ I++WD N I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 516 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575
S + D ++ W + C+ DG T V
Sbjct: 182 SGSGDRTVRIW-----------DLRTGQCSLTLSIEDGVTT-----------VAVSPGDG 219
Query: 576 RFLAAGD-DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNG 629
+++AAG D +++ WD ++ L+ +D++ G + + F +DG + + D
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 630 IKI 632
+K+
Sbjct: 280 VKL 282
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
D +A G +D I+I+++ ++ L+GH + I L + + + LVS D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW- 192
Query: 919 SDGWEKQKNRFLQIPTGRTPTAQS 942
D Q + L I G T A S
Sbjct: 193 -DLRTGQCSLTLSIEDGVTTVAVS 215
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 494 EGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 551
+ H+ ++SV + KEN + + + +LD +K W + + R+D + +S
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLD----------LQWSL 76
Query: 552 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTSIDADGGLPAS 609
+G LGVV D + +AA D I+ WD+++ + + SIDA G +
Sbjct: 77 EG---------HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDA 125
Query: 610 PRIRFNKDGCLLAVSTNDNGIKILATSDG 638
+ F+ D LA T+ + I G
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 511
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571
F+T D L+D R D E M YS D + V F
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 290
Query: 572 TTKNRFLAAGDDFSIKFWD 590
+ LA DDF+ WD
Sbjct: 291 KSGRLLLAGYDDFNCNVWD 309
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 172
Query: 475 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594
+T+ G + + + F N F DD + + +D+ +
Sbjct: 231 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 595 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
Q L + D + + F+K G LL +D
Sbjct: 270 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 220 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 275 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CL 329
Query: 506 HHKENIQFIFSTALDGKIKAW 526
++ + + + D +K W
Sbjct: 330 GVTDDGMAVATGSWDSFLKIW 350
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 511
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 572 TTKNRFLAAGDDFSIKFWD 590
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 475 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 595 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 506 HHKENIQFIFSTALDGKIKAW 526
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 21/205 (10%)
Query: 385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 444
R ++W S ++ L + +V +V WSP G+ A I+ D+
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFE 96
Query: 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504
++ H V +A++ P+ L + TC DK++ VW+ + E E SV
Sbjct: 97 CVTTLEGHENEVKSVAWA-PSGNL-LATCSRDKSVWVWE--------VDEEDEYECVSVL 146
Query: 505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564
H ++++ + + + YD+ ++ E W T +G + +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDT-VKLYREEEDDWVCCA--------TLEG-HEST 196
Query: 565 LGVVQFDTTKNRFLAAGDDFSIKFW 589
+ + FD + R + DD +++ W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
V V+W P L A V++Y D V ++ H V +AF ++L
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSGQRL-- 209
Query: 471 ITCGDDKTIKVWDATNGAKQYI 492
+C DD+T+++W +QY+
Sbjct: 210 ASCSDDRTVRIW------RQYL 225
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 511
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 572 TTKNRFLAAGDDFSIKFWD 590
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 475 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 595 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 506 HHKENIQFIFSTALDGKIKAW 526
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 511
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 572 TTKNRFLAAGDDFSIKFWD 590
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 475 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 595 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 506 HHKENIQFIFSTALDGKIKAW 526
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 511
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 572 TTKNRFLAAGDDFSIKFWD 590
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 475 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 595 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 506 HHKENIQFIFSTALDGKIKAW 526
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 596 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 453 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 508
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 509 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 568 VQFDTTKNRF-LAAGDD-FSIKF 588
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 596 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 453 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 508
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 509 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 568 VQFDTTKNRF-LAAGDD-FSIKF 588
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 596 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 453 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 508
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 509 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 568 VQFDTTKNRF-LAAGDD-FSIKF 588
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 596 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 453 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 508
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 509 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 568 VQFDTTKNRF-LAAGDD-FSIKF 588
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 129 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 596 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
I+AD L ASP DG L+A + D I +
Sbjct: 182 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 216
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 453 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 508
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 509 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 568 VQFDTTKNRF-LAAGDD-FSIKF 588
K + L+A D+ FS+ F
Sbjct: 217 WNLAAKKAMYTLSAQDEVFSLAF 239
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475
W+ D + + + H V IY G V+ H E+ H G V I ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 476 DKTIKVW 482
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 858 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 911
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 912 SQLCVWSSDG 921
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535
DKT+++WD G F GH++ V SV K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVWTI------- 136
Query: 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 137 ----KGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 596 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIXL 222
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 453 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 508
VG +D+ +K+ I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 509 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 568 VQFDTTKNRF-LAAGDD-FSIKF 588
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAXYTLSAQDEVFSLAF 245
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475
W+ D + + + H V IY G V+ H E+ H G V + ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 476 DKTIKVW 482
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 858 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 911
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 912 SQLCVWSSDG 921
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 389 VWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 446
VWD+ G C +QA + VN V + P G F ++Y EV +
Sbjct: 224 VWDMRSGQC---VQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 503
+ ++ + G + + FS + L +D TI VWD G++ I GHE V ++
Sbjct: 279 SK-ESIIFGASSVDFSLSGRLL--FAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 460 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 519
A S N + ++T D T +WD +G F GH A V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 520 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV--VQFDTTKNRF 577
D K W D + + Q F V V++ + + F
Sbjct: 219 DKKAMVW---------DMRSG--------------QCVQAFETHESDVNSVRYYPSGDAF 255
Query: 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637
+ DD + + +D+ + + + + + + + F+ G LL ND I +
Sbjct: 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 638 GIRL 641
G R+
Sbjct: 316 GSRV 319
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 507 HKENIQFIFSTALDGKIKAW 526
+ + + S +LDG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 507 HKENIQFIFSTALDGKIKAW 526
+ + + S +LDG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 627
N+ A G F I WDM D ++LL +I ADG + A P + R K+ + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 628 NG 629
+G
Sbjct: 107 SG 108
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 510
AH G VN + F+ L +T G D +++W+++NG + G VC + K+
Sbjct: 243 AHNGKVNGLCFTSDGLHL--LTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKG 294
Query: 511 IQFIFSTA 518
++F S
Sbjct: 295 LKFTVSCG 302
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 862 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ WSS
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWSS 364
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 456 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-SVCPHHKENIQFI 514
V D+ FS P+ VIT G D+ I +D +G E + PV + + Q
Sbjct: 209 VRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 515 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574
+ D I+ W TT T Q + +GVV T
Sbjct: 268 ATVGADATIRVWD----------------VTTSKCVQKWTLDKQQLGNQQVGVVA--TGN 309
Query: 575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 626
R ++ D ++ F+++ ++L +I L +P I + DG ++ S++
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 856 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
HP+ ++ A G + ++ + N++ + HS+ ITGLA+S H+ L S D +
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294
Query: 915 CVWSSD 920
V +D
Sbjct: 295 AVLDAD 300
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420
L+ G+ D+ WEV + + + + + V D V WS DG
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPK----------AQQMHTGPVLD-------VCWSDDG 98
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
S A +++ Q ++I H V I + CV+T DKT+K
Sbjct: 99 SKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154
Query: 481 VWD 483
WD
Sbjct: 155 FWD 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 856 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 914
HPQ + + G ++ ++ + + + HS+ +TGL FS H++ L S D L
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282
Query: 915 CV 916
V
Sbjct: 283 AV 284
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 449 IDAHVGGVNDIAFSHPNKQLCV--------ITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500
+D H G V H + C+ ++CG+D+T+++W NG+ + + +
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269
Query: 501 YSV 503
+SV
Sbjct: 270 WSV 272
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 385 RNFKVWDLGACSMPLQA--ALVKDPGV---SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 439
+ KVW G+ LQA A V D V S N+ + + + + +++ +S
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183
Query: 440 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499
D VR H+ V+D F I+C +D IK+ D G +EGHE+
Sbjct: 184 NDVVR-------HLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 500 VYSV 503
VY +
Sbjct: 228 VYCI 231
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGGITSFP 26
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 61 DSTGKCGPPPPIDNGDITSFP 81
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 627
N+ A G F I W+M D ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 628 NG 629
+G
Sbjct: 103 SG 104
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 575 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 627
N+ A G F I W +MD ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 628 NG 629
+G
Sbjct: 103 SG 104
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 610
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 82
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 610
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 610
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALP 81
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 610
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 80
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 575 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 610
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
+A+GM+ S++++ +V + K +L H + L F++ VS+G D+ L W
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 862 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 912
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 219
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 862 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 912
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 208
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1070 GKWGVPPPVDNGSTSSMP 1087
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 862 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ W
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1070 GKWGVPPPVDNGSTSSMP 1087
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region Of
Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1070 GKWGVPPPVDNGSTSSMP 1087
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1070 GKWGVPPPVDNGSTSSMP 1087
GK G PPP+DNG +S P
Sbjct: 1 GKCGPPPPIDNGDITSFP 18
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 183 DSTGKCGPPPPIDNGDITSFP 203
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1067 ESEGKWGVPPPVDNGSTSSMP 1087
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 859 DNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
++ I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 918 SS 919
S
Sbjct: 178 PS 179
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 912
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,746,078
Number of Sequences: 62578
Number of extensions: 1369949
Number of successful extensions: 3653
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 2936
Number of HSP's gapped (non-prelim): 609
length of query: 1102
length of database: 14,973,337
effective HSP length: 109
effective length of query: 993
effective length of database: 8,152,335
effective search space: 8095268655
effective search space used: 8095268655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)