Query 001311
Match_columns 1102
No_of_seqs 857 out of 4634
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 21:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.3E-66 2.8E-71 519.0 35.3 483 2-879 26-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.8E-60 6E-65 458.4 28.0 451 1-646 15-476 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.4E-56 5.2E-61 478.6 45.7 574 352-1069 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 1E-55 2.2E-60 473.7 42.7 546 345-1014 61-620 (775)
5 KOG0291 WD40-repeat-containing 100.0 6.4E-51 1.4E-55 436.5 62.3 600 312-1067 18-710 (893)
6 KOG0318 WD40 repeat stress pro 100.0 3.7E-50 7.9E-55 414.2 59.6 577 348-1066 20-602 (603)
7 KOG0271 Notchless-like WD40 re 100.0 3.9E-54 8.4E-59 425.9 26.1 374 331-918 100-479 (480)
8 KOG0318 WD40 repeat stress pro 100.0 1.6E-47 3.4E-52 394.8 56.9 538 341-1013 54-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 9.3E-49 2E-53 419.8 47.7 612 348-1067 23-665 (888)
10 KOG0291 WD40-repeat-containing 100.0 2.3E-46 5.1E-51 401.6 61.0 547 350-1076 18-624 (893)
11 KOG0271 Notchless-like WD40 re 100.0 2.6E-50 5.6E-55 398.8 25.7 364 403-1011 110-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 3.2E-47 6.9E-52 408.0 48.4 514 344-1018 63-669 (888)
13 KOG1408 WD40 repeat protein [F 100.0 1.2E-45 2.6E-50 391.9 41.0 624 350-1096 41-748 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1.3E-42 2.7E-47 369.1 41.4 576 307-1015 54-715 (1080)
15 KOG1539 WD repeat protein [Gen 100.0 9.6E-38 2.1E-42 339.8 55.0 589 352-1069 39-651 (910)
16 KOG0272 U4/U6 small nuclear ri 100.0 9.5E-41 2.1E-45 336.3 23.2 285 451-918 173-458 (459)
17 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-40 5.9E-45 333.0 23.6 284 343-767 172-458 (459)
18 KOG0286 G-protein beta subunit 100.0 8.5E-39 1.8E-43 306.9 32.7 290 342-767 51-343 (343)
19 KOG1063 RNA polymerase II elon 100.0 7.8E-37 1.7E-41 326.1 46.2 587 339-1066 47-763 (764)
20 KOG0276 Vesicle coat complex C 100.0 3.3E-36 7.1E-41 316.8 44.8 461 343-1005 10-483 (794)
21 KOG1539 WD repeat protein [Gen 100.0 2.1E-35 4.6E-40 321.6 50.5 545 345-1011 75-646 (910)
22 KOG0279 G protein beta subunit 100.0 1E-36 2.2E-41 291.1 32.1 256 342-643 11-268 (315)
23 KOG2106 Uncharacterized conser 100.0 2.2E-35 4.7E-40 303.2 44.1 533 300-1065 74-625 (626)
24 KOG0273 Beta-transducin family 100.0 8.6E-36 1.9E-40 304.4 38.3 349 335-920 167-523 (524)
25 KOG0263 Transcription initiati 100.0 5E-37 1.1E-41 334.9 28.6 275 333-638 364-651 (707)
26 KOG0292 Vesicle coat complex C 100.0 2.5E-34 5.5E-39 313.6 47.6 491 345-1011 8-516 (1202)
27 KOG0286 G-protein beta subunit 100.0 1.6E-35 3.4E-40 284.6 33.1 287 445-918 47-343 (343)
28 KOG1063 RNA polymerase II elon 100.0 1.5E-34 3.3E-39 308.7 42.7 545 352-1066 20-699 (764)
29 KOG0276 Vesicle coat complex C 100.0 4.3E-34 9.3E-39 300.9 44.6 466 404-1067 9-491 (794)
30 KOG0296 Angio-associated migra 100.0 3.5E-35 7.6E-40 290.9 34.0 339 403-920 59-398 (399)
31 KOG0279 G protein beta subunit 100.0 1.8E-35 4E-40 282.6 30.2 295 736-1066 12-313 (315)
32 KOG0315 G-protein beta subunit 100.0 5.2E-35 1.1E-39 274.3 30.2 231 360-638 11-247 (311)
33 KOG0295 WD40 repeat-containing 100.0 2E-35 4.3E-40 292.4 25.1 273 339-646 101-373 (406)
34 KOG0315 G-protein beta subunit 100.0 4.9E-34 1.1E-38 267.7 31.8 295 468-899 11-309 (311)
35 KOG0296 Angio-associated migra 100.0 1.6E-33 3.4E-38 279.3 34.3 331 340-878 58-398 (399)
36 KOG0265 U5 snRNP-specific prot 100.0 3.7E-34 8E-39 276.5 29.1 294 400-876 39-336 (338)
37 KOG0295 WD40 repeat-containing 100.0 9.3E-35 2E-39 287.6 24.1 301 403-919 103-405 (406)
38 KOG0273 Beta-transducin family 100.0 2.9E-33 6.3E-38 286.0 30.2 256 345-645 234-490 (524)
39 KOG0285 Pleiotropic regulator 100.0 1.6E-33 3.4E-38 277.5 25.9 245 342-638 147-391 (460)
40 KOG2048 WD40 repeat protein [G 100.0 2.7E-30 5.9E-35 276.4 51.6 505 408-1069 25-551 (691)
41 KOG2106 Uncharacterized conser 100.0 2.4E-31 5.2E-36 273.6 41.6 436 335-919 142-625 (626)
42 KOG0265 U5 snRNP-specific prot 100.0 8.9E-33 1.9E-37 266.9 27.6 254 338-638 39-298 (338)
43 KOG0263 Transcription initiati 100.0 8E-34 1.7E-38 309.9 22.1 274 738-1069 377-652 (707)
44 KOG2048 WD40 repeat protein [G 100.0 2.4E-29 5.1E-34 269.2 55.5 547 345-1066 24-601 (691)
45 KOG0292 Vesicle coat complex C 100.0 8.1E-31 1.8E-35 286.5 44.7 449 404-1022 5-488 (1202)
46 KOG0645 WD40 repeat protein [G 100.0 1E-31 2.2E-36 255.8 32.4 246 341-636 9-261 (312)
47 KOG0284 Polyadenylation factor 100.0 1.3E-33 2.8E-38 283.3 18.5 283 346-769 96-380 (464)
48 KOG0645 WD40 repeat protein [G 100.0 8.7E-32 1.9E-36 256.3 29.7 293 736-1066 11-311 (312)
49 KOG0285 Pleiotropic regulator 100.0 1.9E-32 4.1E-37 269.9 25.5 294 403-836 146-440 (460)
50 KOG0282 mRNA splicing factor [ 100.0 1.3E-32 2.8E-37 282.8 20.0 290 403-876 209-503 (503)
51 KOG0281 Beta-TrCP (transducin 100.0 4.6E-33 1E-37 272.7 15.8 232 345-638 196-430 (499)
52 KOG0284 Polyadenylation factor 100.0 1.2E-32 2.5E-37 276.6 18.8 283 453-920 96-380 (464)
53 KOG0266 WD40 repeat-containing 100.0 5.3E-31 1.1E-35 300.8 33.2 255 345-647 158-419 (456)
54 KOG0266 WD40 repeat-containing 100.0 4.4E-31 9.5E-36 301.4 32.3 289 738-1066 158-454 (456)
55 KOG0316 Conserved WD40 repeat- 100.0 3.3E-31 7.1E-36 246.6 24.9 245 342-638 13-259 (307)
56 KOG1445 Tumor-specific antigen 100.0 7.5E-30 1.6E-34 268.6 36.8 625 337-1018 70-849 (1012)
57 KOG0282 mRNA splicing factor [ 100.0 5.9E-32 1.3E-36 277.9 19.0 264 336-646 203-471 (503)
58 KOG0293 WD40 repeat-containing 100.0 4.8E-31 1E-35 264.8 22.7 287 736-1067 221-514 (519)
59 KOG0316 Conserved WD40 repeat- 100.0 3.4E-30 7.5E-35 239.8 26.2 213 402-649 11-225 (307)
60 KOG0281 Beta-TrCP (transducin 100.0 8.4E-32 1.8E-36 263.9 16.0 273 452-924 196-481 (499)
61 PLN00181 protein SPA1-RELATED; 100.0 6E-29 1.3E-33 307.0 40.6 310 368-919 457-792 (793)
62 cd00200 WD40 WD40 domain, foun 100.0 1.4E-28 3E-33 269.2 36.6 246 343-638 6-251 (289)
63 cd00200 WD40 WD40 domain, foun 100.0 1.4E-28 3E-33 269.2 36.0 285 448-918 4-289 (289)
64 KOG0643 Translation initiation 100.0 1.9E-29 4E-34 239.6 23.6 295 403-921 5-318 (327)
65 PLN00181 protein SPA1-RELATED; 100.0 2E-28 4.4E-33 302.3 39.9 253 342-638 479-740 (793)
66 KOG0278 Serine/threonine kinas 100.0 3.2E-30 6.9E-35 242.0 17.2 288 403-923 9-300 (334)
67 KOG0640 mRNA cleavage stimulat 100.0 8.4E-29 1.8E-33 239.5 26.7 312 340-767 106-424 (430)
68 KOG0275 Conserved WD40 repeat- 100.0 9.7E-30 2.1E-34 246.9 18.6 292 737-1064 211-507 (508)
69 KOG0641 WD40 repeat protein [G 100.0 1.6E-27 3.4E-32 220.2 30.4 275 339-638 25-305 (350)
70 KOG0313 Microtubule binding pr 100.0 4.9E-28 1.1E-32 241.5 26.5 255 337-643 96-383 (423)
71 KOG0278 Serine/threonine kinas 100.0 7.9E-29 1.7E-33 232.7 17.8 285 341-769 9-297 (334)
72 KOG0313 Microtubule binding pr 100.0 1.8E-27 3.8E-32 237.5 24.9 303 404-877 101-417 (423)
73 KOG0288 WD40 repeat protein Ti 100.0 2.1E-28 4.6E-33 246.6 18.0 260 334-644 162-424 (459)
74 KOG1445 Tumor-specific antigen 100.0 1.7E-26 3.8E-31 243.4 32.7 586 403-1073 74-851 (1012)
75 KOG1407 WD40 repeat protein [F 100.0 5.6E-27 1.2E-31 222.3 25.6 276 448-911 15-293 (313)
76 KOG0299 U3 snoRNP-associated p 100.0 3.2E-27 6.9E-32 241.8 25.8 269 342-643 138-417 (479)
77 KOG0274 Cdc4 and related F-box 100.0 7.2E-27 1.6E-31 264.1 31.4 245 342-645 204-449 (537)
78 KOG0973 Histone transcription 100.0 3E-27 6.4E-32 268.0 26.4 304 738-1069 12-358 (942)
79 KOG0310 Conserved WD40 repeat- 100.0 8.4E-27 1.8E-31 240.8 26.2 286 738-1069 25-312 (487)
80 KOG0283 WD40 repeat-containing 100.0 3.2E-27 6.9E-32 261.1 24.4 272 344-638 265-578 (712)
81 KOG1407 WD40 repeat protein [F 100.0 2.1E-26 4.5E-31 218.4 26.3 279 402-869 14-293 (313)
82 KOG0643 Translation initiation 100.0 2.2E-26 4.7E-31 218.9 26.2 235 340-626 4-251 (327)
83 KOG0283 WD40 repeat-containing 100.0 6.1E-27 1.3E-31 258.9 25.5 274 737-1015 265-578 (712)
84 KOG1446 Histone H3 (Lys4) meth 100.0 3.9E-25 8.4E-30 217.1 34.0 288 403-878 9-303 (311)
85 KOG0288 WD40 repeat protein Ti 100.0 1.2E-27 2.6E-32 241.2 16.5 286 403-875 170-458 (459)
86 KOG0274 Cdc4 and related F-box 100.0 5.2E-26 1.1E-30 257.1 31.1 287 406-890 206-494 (537)
87 KOG0310 Conserved WD40 repeat- 100.0 2E-26 4.3E-31 238.0 25.2 248 343-638 23-270 (487)
88 KOG0277 Peroxisomal targeting 100.0 1E-26 2.2E-31 219.5 21.1 286 350-718 12-307 (311)
89 KOG0647 mRNA export protein (c 99.9 6.7E-26 1.4E-30 219.6 26.5 247 344-636 25-281 (347)
90 PTZ00421 coronin; Provisional 99.9 2.4E-25 5.2E-30 252.1 35.6 265 739-1022 20-299 (493)
91 KOG0973 Histone transcription 99.9 1.9E-26 4.1E-31 261.4 26.3 280 345-638 12-357 (942)
92 PTZ00421 coronin; Provisional 99.9 3.2E-25 6.9E-30 251.1 34.7 263 345-638 19-292 (493)
93 KOG1446 Histone H3 (Lys4) meth 99.9 5E-25 1.1E-29 216.3 31.1 268 805-1092 13-287 (311)
94 KOG0277 Peroxisomal targeting 99.9 1.6E-26 3.4E-31 218.3 19.4 252 339-635 53-308 (311)
95 KOG0640 mRNA cleavage stimulat 99.9 2.9E-26 6.3E-31 222.0 20.9 248 737-1012 170-425 (430)
96 KOG0308 Conserved WD40 repeat- 99.9 1.7E-26 3.8E-31 245.6 20.9 253 345-638 20-287 (735)
97 KOG0772 Uncharacterized conser 99.9 8.4E-26 1.8E-30 233.6 24.8 221 403-643 162-401 (641)
98 KOG0772 Uncharacterized conser 99.9 1.1E-25 2.3E-30 232.8 24.8 296 736-1065 164-486 (641)
99 KOG2096 WD40 repeat protein [G 99.9 7.2E-25 1.6E-29 213.4 28.2 313 403-876 81-400 (420)
100 KOG2096 WD40 repeat protein [G 99.9 5.4E-25 1.2E-29 214.3 27.3 320 586-1011 63-400 (420)
101 KOG0305 Anaphase promoting com 99.9 2.8E-25 6.1E-30 240.3 27.6 273 351-768 182-460 (484)
102 KOG0300 WD40 repeat-containing 99.9 1.7E-25 3.6E-30 217.2 22.6 249 341-638 143-430 (481)
103 KOG0294 WD40 repeat-containing 99.9 8E-25 1.7E-29 213.4 26.4 239 804-1068 41-283 (362)
104 KOG0308 Conserved WD40 repeat- 99.9 6E-26 1.3E-30 241.5 19.3 367 413-1022 29-402 (735)
105 KOG0301 Phospholipase A2-activ 99.9 3.1E-25 6.8E-30 238.1 24.9 238 342-636 10-249 (745)
106 PTZ00420 coronin; Provisional 99.9 3.1E-24 6.7E-29 243.4 33.8 235 365-638 50-295 (568)
107 KOG0641 WD40 repeat protein [G 99.9 5.4E-24 1.2E-28 196.9 28.9 308 738-1066 31-349 (350)
108 KOG0299 U3 snoRNP-associated p 99.9 6.8E-25 1.5E-29 224.9 25.2 292 403-825 137-444 (479)
109 KOG0305 Anaphase promoting com 99.9 4.8E-25 1E-29 238.5 24.8 253 335-638 205-463 (484)
110 KOG0289 mRNA splicing factor [ 99.9 1.7E-24 3.7E-29 219.7 26.5 241 737-1012 259-505 (506)
111 KOG0264 Nucleosome remodeling 99.9 4.7E-25 1E-29 226.6 21.5 269 338-637 116-405 (422)
112 KOG0647 mRNA export protein (c 99.9 5.1E-24 1.1E-28 206.6 26.0 207 404-638 23-230 (347)
113 KOG0289 mRNA splicing factor [ 99.9 4.5E-24 9.7E-29 216.7 26.6 282 454-919 220-505 (506)
114 KOG0639 Transducin-like enhanc 99.9 9.2E-24 2E-28 217.4 28.9 255 338-638 411-665 (705)
115 KOG0268 Sof1-like rRNA process 99.9 3.3E-25 7.1E-30 219.8 17.4 287 404-840 62-350 (433)
116 KOG0300 WD40 repeat-containing 99.9 1.6E-24 3.4E-29 210.4 21.7 319 565-1015 151-478 (481)
117 PTZ00420 coronin; Provisional 99.9 1.3E-23 2.7E-28 238.4 31.5 243 339-618 67-318 (568)
118 KOG0268 Sof1-like rRNA process 99.9 3.7E-25 8E-30 219.4 15.7 285 448-881 61-348 (433)
119 KOG0301 Phospholipase A2-activ 99.9 4.4E-24 9.5E-29 229.3 24.9 276 736-1068 11-290 (745)
120 KOG1963 WD40 repeat protein [G 99.9 4.1E-22 8.9E-27 221.4 40.3 516 412-1072 20-589 (792)
121 KOG0294 WD40 repeat-containing 99.9 7.8E-23 1.7E-27 199.7 28.3 248 444-880 34-283 (362)
122 KOG1332 Vesicle coat complex C 99.9 3.8E-24 8.3E-29 201.1 17.3 257 344-636 9-286 (299)
123 KOG0639 Transducin-like enhanc 99.9 8.4E-24 1.8E-28 217.7 20.9 282 738-1065 418-703 (705)
124 KOG1274 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 207.4 49.1 255 342-637 9-263 (933)
125 KOG1036 Mitotic spindle checkp 99.9 1.6E-22 3.4E-27 197.6 27.4 242 345-638 12-264 (323)
126 KOG1332 Vesicle coat complex C 99.9 1.4E-23 3.1E-28 197.3 18.8 222 403-636 6-241 (299)
127 KOG4283 Transcription-coupled 99.9 2.2E-22 4.8E-27 194.0 26.3 240 342-641 39-281 (397)
128 KOG1963 WD40 repeat protein [G 99.9 8.7E-21 1.9E-25 210.9 42.1 510 350-1021 20-591 (792)
129 KOG0646 WD40 repeat protein [G 99.9 9.2E-23 2E-27 209.8 23.3 212 408-647 81-317 (476)
130 KOG1274 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 222.2 28.6 251 737-1014 11-263 (933)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-21 1E-25 211.4 38.0 205 811-1022 77-288 (300)
132 KOG0321 WD40 repeat-containing 99.9 8.1E-23 1.8E-27 217.4 20.7 434 414-1014 55-532 (720)
133 KOG1273 WD40 repeat protein [G 99.9 7.9E-22 1.7E-26 192.2 24.7 295 411-879 26-323 (405)
134 KOG1538 Uncharacterized conser 99.9 2.4E-21 5.2E-26 206.0 29.9 457 348-964 14-519 (1081)
135 KOG1036 Mitotic spindle checkp 99.9 3.4E-21 7.3E-26 188.3 27.5 284 405-868 10-294 (323)
136 KOG2055 WD40 repeat protein [G 99.9 1.8E-21 4E-26 199.6 25.6 248 739-1013 257-512 (514)
137 KOG0264 Nucleosome remodeling 99.9 3E-22 6.4E-27 206.1 19.5 234 337-592 168-404 (422)
138 KOG1538 Uncharacterized conser 99.9 7.3E-21 1.6E-25 202.4 30.4 458 410-1055 14-514 (1081)
139 KOG0646 WD40 repeat protein [G 99.9 5.1E-22 1.1E-26 204.4 20.8 243 345-618 80-331 (476)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.9E-20 8.4E-25 204.0 37.2 294 420-900 1-300 (300)
141 KOG4283 Transcription-coupled 99.9 3.1E-21 6.7E-26 186.2 23.5 246 736-1012 98-364 (397)
142 KOG0650 WD40 repeat nucleolar 99.9 1.1E-20 2.4E-25 199.6 26.6 313 447-917 394-732 (733)
143 KOG2055 WD40 repeat protein [G 99.9 8.6E-21 1.9E-25 194.7 25.1 291 453-878 213-512 (514)
144 KOG0321 WD40 repeat-containing 99.9 3.5E-21 7.5E-26 205.1 22.3 290 752-1069 65-394 (720)
145 KOG2445 Nuclear pore complex c 99.9 6.2E-20 1.3E-24 178.9 27.3 267 450-920 10-318 (361)
146 KOG1273 WD40 repeat protein [G 99.9 5E-20 1.1E-24 179.7 26.7 275 335-638 13-324 (405)
147 KOG0650 WD40 repeat nucleolar 99.9 3.5E-20 7.6E-25 195.8 24.8 323 555-1010 394-732 (733)
148 KOG0267 Microtubule severing p 99.9 4.4E-22 9.6E-27 214.7 10.5 232 805-1058 27-260 (825)
149 KOG1009 Chromatin assembly com 99.9 1.1E-19 2.3E-24 184.1 26.5 172 345-530 12-196 (434)
150 KOG0267 Microtubule severing p 99.9 5.3E-22 1.1E-26 214.2 10.5 235 343-627 25-259 (825)
151 KOG0269 WD40 repeat-containing 99.9 8.7E-21 1.9E-25 206.6 18.2 283 701-1015 50-342 (839)
152 KOG4328 WD40 protein [Function 99.9 4.8E-20 1E-24 189.2 22.5 258 345-643 185-456 (498)
153 KOG2445 Nuclear pore complex c 99.9 2.9E-19 6.3E-24 174.2 26.0 260 343-636 10-318 (361)
154 KOG0302 Ribosome Assembly prot 99.9 7.6E-20 1.6E-24 183.0 21.5 269 336-633 141-435 (440)
155 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-17 6E-22 192.1 47.0 371 341-921 60-443 (466)
156 KOG0270 WD40 repeat-containing 99.8 3.1E-20 6.8E-25 190.1 18.7 266 348-640 175-453 (463)
157 KOG1034 Transcriptional repres 99.8 1.1E-19 2.4E-24 178.6 20.4 300 736-1066 35-383 (385)
158 KOG0269 WD40 repeat-containing 99.8 4.7E-20 1E-24 201.0 17.9 270 346-653 39-313 (839)
159 KOG4378 Nuclear protein COP1 [ 99.8 5.3E-19 1.1E-23 182.5 23.4 293 705-1046 5-304 (673)
160 KOG1034 Transcriptional repres 99.8 1.3E-19 2.9E-24 178.1 18.1 259 345-636 88-383 (385)
161 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-16 3.6E-21 185.5 47.5 368 449-1014 61-443 (466)
162 KOG4378 Nuclear protein COP1 [ 99.8 8.4E-19 1.8E-23 181.1 23.2 210 750-995 90-305 (673)
163 KOG4328 WD40 protein [Function 99.8 9.3E-19 2E-23 179.8 23.1 316 482-878 171-495 (498)
164 KOG0302 Ribosome Assembly prot 99.8 5.7E-19 1.2E-23 176.8 19.5 219 339-585 204-432 (440)
165 KOG1310 WD40 repeat protein [G 99.8 1.4E-18 3E-23 181.6 22.0 168 447-636 44-231 (758)
166 KOG0270 WD40 repeat-containing 99.8 1E-18 2.2E-23 179.1 20.3 196 419-638 191-406 (463)
167 KOG2919 Guanine nucleotide-bin 99.8 1.9E-17 4.1E-22 162.5 25.7 227 749-1004 121-361 (406)
168 KOG0322 G-protein beta subunit 99.8 5.2E-18 1.1E-22 161.9 18.6 308 488-919 5-322 (323)
169 KOG0307 Vesicle coat complex C 99.8 7.7E-19 1.7E-23 200.9 15.3 256 343-638 61-329 (1049)
170 KOG4497 Uncharacterized conser 99.8 1.6E-17 3.5E-22 163.2 21.8 406 351-914 13-426 (447)
171 KOG1524 WD40 repeat-containing 99.8 3E-16 6.5E-21 164.0 32.1 499 342-1018 10-528 (737)
172 KOG2919 Guanine nucleotide-bin 99.8 2.7E-17 5.9E-22 161.5 22.4 273 456-911 52-361 (406)
173 KOG1009 Chromatin assembly com 99.8 5.7E-17 1.2E-21 164.5 24.6 301 739-1069 13-375 (434)
174 KOG0303 Actin-binding protein 99.8 2.1E-17 4.7E-22 166.5 21.2 220 401-646 74-304 (472)
175 KOG0303 Actin-binding protein 99.8 3.5E-17 7.5E-22 165.0 21.2 244 336-617 71-320 (472)
176 KOG1912 WD40 repeat protein [G 99.8 2.9E-16 6.3E-21 171.1 28.8 510 345-992 14-572 (1062)
177 KOG1912 WD40 repeat protein [G 99.8 8.1E-16 1.8E-20 167.6 31.4 605 332-1018 40-746 (1062)
178 KOG0307 Vesicle coat complex C 99.7 1.4E-17 3.1E-22 190.7 16.1 278 709-1016 36-330 (1049)
179 PRK11028 6-phosphogluconolacto 99.7 1.5E-15 3.2E-20 168.7 31.6 279 705-1017 5-310 (330)
180 KOG0642 Cell-cycle nuclear pro 99.7 2.9E-17 6.3E-22 173.6 16.7 229 403-638 289-563 (577)
181 KOG1188 WD40 repeat protein [G 99.7 1.8E-16 3.8E-21 157.5 20.9 151 469-638 42-198 (376)
182 KOG1007 WD repeat protein TSSC 99.7 2.6E-16 5.6E-21 152.2 21.4 234 738-1013 122-361 (370)
183 KOG1517 Guanine nucleotide bin 99.7 2.4E-16 5.2E-21 177.5 24.1 306 452-880 1063-1383(1387)
184 KOG4227 WD40 repeat protein [G 99.7 2.9E-16 6.3E-21 157.5 22.0 214 400-638 48-276 (609)
185 PRK11028 6-phosphogluconolacto 99.7 3.5E-15 7.7E-20 165.6 33.2 252 807-1074 35-312 (330)
186 KOG0322 G-protein beta subunit 99.7 7.8E-17 1.7E-21 154.0 16.8 308 445-877 6-322 (323)
187 KOG4497 Uncharacterized conser 99.7 5.4E-16 1.2E-20 152.6 23.1 396 413-958 13-420 (447)
188 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.2E-20 142.6 25.7 289 740-1064 11-314 (325)
189 KOG4227 WD40 repeat protein [G 99.7 4.2E-16 9.1E-21 156.4 22.1 305 448-920 51-387 (609)
190 KOG1188 WD40 repeat protein [G 99.7 1.3E-16 2.8E-21 158.4 18.2 198 361-601 42-251 (376)
191 KOG1007 WD repeat protein TSSC 99.7 2.6E-16 5.7E-21 152.2 19.8 259 342-636 59-361 (370)
192 KOG2110 Uncharacterized conser 99.7 2.5E-15 5.4E-20 151.1 27.1 241 806-1069 5-251 (391)
193 KOG0644 Uncharacterized conser 99.7 7.6E-18 1.6E-22 184.6 9.9 253 337-648 181-438 (1113)
194 KOG0649 WD40 repeat protein [G 99.7 9.6E-16 2.1E-20 144.6 22.0 253 348-636 12-274 (325)
195 KOG0644 Uncharacterized conser 99.7 1.9E-17 4.2E-22 181.5 11.5 281 448-923 185-471 (1113)
196 KOG1334 WD40 repeat protein [G 99.7 7.2E-17 1.6E-21 167.3 14.0 322 447-880 136-468 (559)
197 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-16 5.6E-21 166.6 17.0 277 448-891 289-574 (577)
198 KOG1524 WD40 repeat-containing 99.7 3.3E-14 7.2E-19 148.9 30.5 477 406-1069 12-526 (737)
199 KOG1517 Guanine nucleotide bin 99.7 5.3E-15 1.1E-19 166.8 26.1 259 741-1016 1111-1384(1387)
200 KOG1334 WD40 repeat protein [G 99.7 4.6E-16 1E-20 161.3 16.0 275 342-647 138-434 (559)
201 KOG0290 Conserved WD40 repeat- 99.7 1.7E-14 3.7E-19 140.0 23.7 243 805-1062 95-361 (364)
202 KOG1587 Cytoplasmic dynein int 99.7 6.7E-15 1.4E-19 165.4 24.1 263 338-638 234-518 (555)
203 KOG0290 Conserved WD40 repeat- 99.7 8.8E-15 1.9E-19 142.0 20.7 253 342-632 92-361 (364)
204 KOG1587 Cytoplasmic dynein int 99.7 4.7E-14 1E-18 158.6 28.1 285 430-921 222-517 (555)
205 KOG0974 WD-repeat protein WDR6 99.6 2.3E-12 5.1E-17 147.0 41.0 149 353-530 140-289 (967)
206 KOG0771 Prolactin regulatory e 99.6 2.9E-15 6.3E-20 153.8 15.8 198 810-1014 148-355 (398)
207 KOG1240 Protein kinase contain 99.6 5.8E-14 1.3E-18 161.4 26.6 268 339-638 1041-1336(1431)
208 KOG1240 Protein kinase contain 99.6 9.1E-14 2E-18 159.8 28.0 214 403-638 1043-1275(1431)
209 KOG0771 Prolactin regulatory e 99.6 5.5E-15 1.2E-19 151.8 16.0 200 851-1068 148-356 (398)
210 KOG1523 Actin-related protein 99.6 1.7E-14 3.7E-19 142.2 18.7 209 408-639 10-239 (361)
211 KOG2110 Uncharacterized conser 99.6 8.6E-13 1.9E-17 133.2 30.4 305 739-1085 5-351 (391)
212 KOG0974 WD-repeat protein WDR6 99.6 2.7E-12 5.9E-17 146.5 38.0 196 348-594 89-290 (967)
213 KOG1310 WD40 repeat protein [G 99.6 5E-15 1.1E-19 155.4 14.8 238 342-600 46-311 (758)
214 COG4946 Uncharacterized protei 99.6 1.1E-10 2.4E-15 121.2 42.9 145 738-910 358-508 (668)
215 KOG2111 Uncharacterized conser 99.6 3.6E-13 7.7E-18 133.2 23.5 241 808-1069 7-259 (346)
216 PF02239 Cytochrom_D1: Cytochr 99.6 2E-12 4.3E-17 142.4 31.6 326 513-978 8-356 (369)
217 PF02239 Cytochrom_D1: Cytochr 99.6 1.6E-12 3.5E-17 143.1 30.8 323 467-926 6-353 (369)
218 PRK01742 tolB translocation pr 99.6 1.5E-13 3.2E-18 157.2 23.3 223 339-617 196-426 (429)
219 PRK01742 tolB translocation pr 99.6 4.3E-13 9.3E-18 153.5 26.7 225 368-650 183-416 (429)
220 KOG1523 Actin-related protein 99.6 2.6E-13 5.5E-18 134.1 20.5 244 805-1067 9-279 (361)
221 KOG2139 WD40 repeat protein [G 99.6 1.1E-12 2.4E-17 131.5 25.0 255 345-628 97-367 (445)
222 KOG2139 WD40 repeat protein [G 99.6 1.9E-12 4.1E-17 129.9 25.2 289 703-1012 111-430 (445)
223 KOG2394 WD40 protein DMR-N9 [G 99.5 5.7E-13 1.2E-17 140.3 17.3 168 816-993 183-384 (636)
224 KOG2321 WD40 repeat protein [G 99.5 2.7E-12 5.8E-17 136.3 22.4 195 810-1015 137-345 (703)
225 KOG2041 WD40 repeat protein [G 99.5 3.5E-11 7.6E-16 130.6 30.6 546 345-1013 13-619 (1189)
226 KOG1272 WD40-repeat-containing 99.5 1.3E-13 2.9E-18 142.4 11.7 282 740-1070 130-413 (545)
227 KOG2394 WD40 protein DMR-N9 [G 99.5 4E-13 8.7E-18 141.4 15.1 154 346-506 219-383 (636)
228 KOG2321 WD40 repeat protein [G 99.5 5.1E-12 1.1E-16 134.2 23.1 256 340-638 45-304 (703)
229 KOG2041 WD40 repeat protein [G 99.5 1.4E-10 3E-15 126.1 33.7 479 407-1022 13-541 (1189)
230 KOG1409 Uncharacterized conser 99.5 4.9E-12 1.1E-16 126.2 19.7 326 572-1014 34-395 (404)
231 PF10282 Lactonase: Lactonase, 99.5 5.6E-10 1.2E-14 123.8 38.4 209 809-1020 89-331 (345)
232 PRK03629 tolB translocation pr 99.5 1.7E-11 3.6E-16 139.9 26.4 223 339-616 191-427 (429)
233 PF04762 IKI3: IKI3 family; I 99.4 1.1E-07 2.4E-12 116.6 59.4 521 347-1066 22-639 (928)
234 PF04762 IKI3: IKI3 family; I 99.4 3.8E-08 8.3E-13 120.5 54.8 537 345-1017 74-688 (928)
235 PRK03629 tolB translocation pr 99.4 1.4E-10 3.1E-15 132.2 31.2 214 369-636 179-406 (429)
236 COG2706 3-carboxymuconate cycl 99.4 1E-09 2.2E-14 112.0 33.2 283 711-1019 15-329 (346)
237 KOG3881 Uncharacterized conser 99.4 2.1E-11 4.6E-16 124.2 21.1 95 805-901 246-342 (412)
238 KOG2315 Predicted translation 99.4 5E-10 1.1E-14 119.7 32.1 254 784-1069 106-393 (566)
239 KOG1272 WD40-repeat-containing 99.4 2.5E-12 5.4E-17 133.2 14.3 256 346-638 129-411 (545)
240 PRK04922 tolB translocation pr 99.4 3.3E-11 7.1E-16 138.4 25.3 225 337-616 194-432 (433)
241 KOG2111 Uncharacterized conser 99.4 5.5E-10 1.2E-14 111.0 29.7 238 348-638 7-258 (346)
242 COG4946 Uncharacterized protei 99.4 5.1E-09 1.1E-13 109.2 37.9 171 817-1002 331-507 (668)
243 PRK02889 tolB translocation pr 99.4 6.3E-11 1.4E-15 135.4 26.9 204 827-1058 176-392 (427)
244 KOG1354 Serine/threonine prote 99.4 4.8E-11 1E-15 119.1 22.0 365 453-967 25-432 (433)
245 COG5354 Uncharacterized protei 99.4 4.4E-10 9.4E-15 118.5 30.2 362 404-912 28-421 (561)
246 PRK05137 tolB translocation pr 99.4 1.4E-10 3E-15 133.4 29.6 216 369-638 182-414 (435)
247 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.5E-09 3.2E-14 116.3 34.6 205 810-1022 108-339 (352)
248 PRK02889 tolB translocation pr 99.4 4.7E-11 1E-15 136.4 24.9 226 337-616 186-424 (427)
249 KOG2315 Predicted translation 99.4 6.7E-10 1.5E-14 118.8 31.2 112 805-922 269-392 (566)
250 PF10282 Lactonase: Lactonase, 99.4 1E-09 2.2E-14 121.7 33.1 252 806-1074 36-330 (345)
251 PF08662 eIF2A: Eukaryotic tra 99.4 4.9E-11 1.1E-15 119.0 20.3 155 851-1022 9-187 (194)
252 PRK04922 tolB translocation pr 99.4 1.7E-10 3.7E-15 132.5 27.1 215 369-637 184-412 (433)
253 PRK05137 tolB translocation pr 99.3 1.6E-10 3.6E-15 132.8 26.0 232 329-616 184-432 (435)
254 KOG3881 Uncharacterized conser 99.3 2E-10 4.4E-15 117.1 21.5 256 344-638 53-322 (412)
255 COG2706 3-carboxymuconate cycl 99.3 8.8E-09 1.9E-13 105.2 32.2 258 805-1078 38-333 (346)
256 PF08662 eIF2A: Eukaryotic tra 99.3 2.2E-10 4.8E-15 114.3 19.8 151 350-529 9-179 (194)
257 KOG1409 Uncharacterized conser 99.3 3.6E-10 7.8E-15 113.2 20.2 214 403-648 19-239 (404)
258 TIGR02800 propeller_TolB tol-p 99.3 1.8E-09 3.8E-14 124.8 29.4 205 827-1059 170-387 (417)
259 COG5354 Uncharacterized protei 99.3 1.2E-08 2.6E-13 107.9 31.5 132 869-1016 254-398 (561)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.1E-08 2.4E-13 109.6 31.5 237 814-1069 53-333 (352)
261 PRK00178 tolB translocation pr 99.2 1.8E-09 3.9E-14 124.7 26.8 226 337-616 189-427 (430)
262 KOG1354 Serine/threonine prote 99.2 1.2E-09 2.6E-14 109.4 21.2 277 344-640 23-363 (433)
263 PRK01029 tolB translocation pr 99.2 2.1E-09 4.7E-14 122.0 25.8 228 341-618 179-426 (428)
264 PRK04792 tolB translocation pr 99.2 1.5E-09 3.4E-14 124.3 24.8 223 340-616 211-446 (448)
265 TIGR02800 propeller_TolB tol-p 99.2 4.6E-09 1E-13 121.3 28.7 191 404-628 185-386 (417)
266 KOG4547 WD40 repeat-containing 99.2 2.4E-09 5.1E-14 115.7 23.1 173 356-552 3-195 (541)
267 KOG2314 Translation initiation 99.2 1.3E-08 2.9E-13 108.4 27.1 295 740-1069 250-576 (698)
268 KOG2314 Translation initiation 99.2 1.2E-08 2.6E-13 108.7 26.8 321 565-1013 213-573 (698)
269 KOG4547 WD40 repeat-containing 99.2 3.8E-09 8.3E-14 114.2 23.3 188 816-1014 3-221 (541)
270 PRK00178 tolB translocation pr 99.1 1.9E-08 4.1E-13 116.2 28.6 199 404-636 194-406 (430)
271 PRK04792 tolB translocation pr 99.1 2E-08 4.4E-13 115.1 28.5 210 828-1065 199-424 (448)
272 TIGR03300 assembly_YfgL outer 99.1 4.1E-08 8.9E-13 111.3 30.4 304 469-917 67-376 (377)
273 TIGR03300 assembly_YfgL outer 99.1 9.2E-08 2E-12 108.5 32.2 230 358-638 65-299 (377)
274 KOG0280 Uncharacterized conser 99.1 9.7E-09 2.1E-13 101.0 19.8 199 809-1015 124-335 (339)
275 PRK01029 tolB translocation pr 99.1 4.5E-08 9.8E-13 111.3 27.6 204 404-638 180-405 (428)
276 KOG1832 HIV-1 Vpr-binding prot 99.1 1.7E-10 3.7E-15 128.3 7.6 217 342-624 1097-1319(1516)
277 PLN02919 haloacid dehalogenase 99.0 1.1E-07 2.5E-12 119.0 31.8 256 810-1069 571-891 (1057)
278 KOG0280 Uncharacterized conser 99.0 2.9E-08 6.3E-13 97.7 20.1 190 346-552 69-264 (339)
279 KOG1064 RAVE (regulator of V-A 99.0 2E-09 4.4E-14 129.0 13.2 197 344-602 2206-2408(2439)
280 KOG4190 Uncharacterized conser 99.0 1.5E-09 3.3E-14 114.6 10.2 210 403-638 730-950 (1034)
281 PLN02919 haloacid dehalogenase 99.0 5.7E-07 1.2E-11 112.8 33.1 275 349-638 570-890 (1057)
282 KOG0309 Conserved WD40 repeat- 98.9 9.6E-09 2.1E-13 112.7 13.8 304 342-721 20-340 (1081)
283 KOG3914 WD repeat protein WDR4 98.9 1.2E-08 2.7E-13 105.1 12.5 164 350-539 66-233 (390)
284 KOG4190 Uncharacterized conser 98.9 7.3E-09 1.6E-13 109.6 10.3 240 804-1065 733-987 (1034)
285 KOG1064 RAVE (regulator of V-A 98.9 1E-08 2.2E-13 123.2 12.3 200 404-645 2204-2406(2439)
286 KOG2659 LisH motif-containing 98.8 1.6E-08 3.5E-13 97.9 10.3 156 3-170 36-204 (228)
287 PF15492 Nbas_N: Neuroblastoma 98.8 9.7E-07 2.1E-11 87.9 22.8 207 812-1023 3-269 (282)
288 KOG3617 WD40 and TPR repeat-co 98.8 2.2E-06 4.8E-11 96.0 27.3 337 350-825 19-374 (1416)
289 PRK04043 tolB translocation pr 98.8 1.2E-06 2.7E-11 98.8 25.6 190 808-1015 189-402 (419)
290 PF13360 PQQ_2: PQQ-like domai 98.8 1.8E-06 3.8E-11 91.1 25.6 224 826-1073 2-237 (238)
291 KOG4532 WD40-like repeat conta 98.8 1.4E-06 3.1E-11 84.9 21.3 242 818-1068 84-333 (344)
292 PRK11138 outer membrane biogen 98.8 7.6E-06 1.6E-10 93.1 30.6 310 469-919 71-393 (394)
293 PRK04043 tolB translocation pr 98.8 2.6E-06 5.6E-11 96.2 26.0 157 347-532 188-360 (419)
294 KOG3914 WD repeat protein WDR4 98.7 1E-07 2.3E-12 98.5 12.7 158 893-1069 65-226 (390)
295 KOG0309 Conserved WD40 repeat- 98.7 6.4E-08 1.4E-12 106.5 10.7 256 348-637 69-340 (1081)
296 PF15492 Nbas_N: Neuroblastoma 98.7 6.7E-06 1.5E-10 82.1 23.6 216 853-1075 3-270 (282)
297 PF07433 DUF1513: Protein of u 98.7 9E-06 2E-10 84.0 25.5 245 350-632 8-281 (305)
298 PRK11138 outer membrane biogen 98.7 3E-05 6.6E-10 88.2 32.1 211 826-1065 169-393 (394)
299 KOG4532 WD40-like repeat conta 98.7 4.4E-06 9.5E-11 81.5 20.5 232 617-921 83-332 (344)
300 KOG1897 Damage-specific DNA bi 98.7 0.0025 5.4E-08 74.4 51.1 560 415-1068 264-944 (1096)
301 PF08450 SGL: SMP-30/Gluconola 98.7 3.3E-05 7.1E-10 81.6 29.6 217 810-1053 3-242 (246)
302 COG5170 CDC55 Serine/threonine 98.6 5.3E-07 1.2E-11 89.3 13.6 227 406-649 24-322 (460)
303 KOG4714 Nucleoporin [Nuclear s 98.6 5.7E-07 1.2E-11 87.2 13.4 150 748-921 98-255 (319)
304 PF08450 SGL: SMP-30/Gluconola 98.6 0.00011 2.5E-09 77.5 32.7 226 350-625 3-244 (246)
305 PF07433 DUF1513: Protein of u 98.6 2.2E-05 4.8E-10 81.2 25.8 207 809-1022 7-256 (305)
306 KOG2695 WD40 repeat protein [G 98.6 2.2E-07 4.8E-12 93.6 10.3 155 363-541 228-388 (425)
307 KOG3617 WD40 and TPR repeat-co 98.6 7.6E-06 1.7E-10 91.9 22.9 115 411-534 18-136 (1416)
308 KOG4714 Nucleoporin [Nuclear s 98.6 5.9E-07 1.3E-11 87.1 12.2 210 349-593 39-255 (319)
309 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00033 7.2E-09 68.5 30.5 148 459-634 16-163 (354)
310 COG5170 CDC55 Serine/threonine 98.5 7.2E-07 1.6E-11 88.4 11.9 119 804-923 170-312 (460)
311 PF06433 Me-amine-dh_H: Methyl 98.5 0.00012 2.7E-09 76.7 28.3 205 811-1022 99-329 (342)
312 PF13360 PQQ_2: PQQ-like domai 98.5 2.4E-05 5.3E-10 82.4 24.0 228 368-640 2-234 (238)
313 KOG0882 Cyclophilin-related pe 98.5 6.6E-06 1.4E-10 86.1 18.6 215 406-646 7-240 (558)
314 KOG2695 WD40 repeat protein [G 98.5 6.5E-07 1.4E-11 90.3 10.6 154 820-1023 227-386 (425)
315 PF10607 CLTH: CTLH/CRA C-term 98.5 4.2E-07 9E-12 86.7 8.9 133 26-170 5-141 (145)
316 KOG0882 Cyclophilin-related pe 98.5 1.4E-06 3.1E-11 90.9 12.3 213 846-1069 8-234 (558)
317 PRK02888 nitrous-oxide reducta 98.5 0.00011 2.5E-09 83.2 28.2 182 814-1014 200-405 (635)
318 KOG1832 HIV-1 Vpr-binding prot 98.4 2.2E-07 4.7E-12 104.3 5.9 199 837-1069 1091-1294(1516)
319 KOG1920 IkappaB kinase complex 98.4 0.00052 1.1E-08 81.6 33.3 275 563-919 69-364 (1265)
320 PRK02888 nitrous-oxide reducta 98.4 1.6E-05 3.6E-10 89.8 20.0 224 816-1067 139-405 (635)
321 KOG1920 IkappaB kinase complex 98.4 6.8E-05 1.5E-09 88.7 24.8 275 739-1065 68-364 (1265)
322 PF00400 WD40: WD domain, G-be 98.4 7.4E-07 1.6E-11 62.7 5.5 39 880-918 1-39 (39)
323 KOG2066 Vacuolar assembly/sort 98.3 1E-05 2.2E-10 91.3 16.0 189 848-1066 40-233 (846)
324 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0023 5E-08 62.9 29.5 117 352-495 16-133 (354)
325 KOG1645 RING-finger-containing 98.3 4E-05 8.7E-10 79.5 18.2 223 403-636 188-461 (463)
326 KOG1275 PAB-dependent poly(A) 98.3 1.2E-05 2.5E-10 91.7 14.1 181 817-1011 146-340 (1118)
327 KOG2114 Vacuolar assembly/sort 98.3 6.9E-05 1.5E-09 85.3 20.1 206 854-1073 30-250 (933)
328 KOG1645 RING-finger-containing 98.2 4.4E-05 9.6E-10 79.2 16.3 243 805-1067 192-462 (463)
329 smart00668 CTLH C-terminal to 98.2 1.2E-06 2.5E-11 68.1 3.6 53 25-78 4-56 (58)
330 PF00400 WD40: WD domain, G-be 98.2 3.8E-06 8.3E-11 59.0 5.8 39 837-876 1-39 (39)
331 PF06433 Me-amine-dh_H: Methyl 98.2 0.001 2.3E-08 69.9 25.9 245 809-1071 38-325 (342)
332 KOG3621 WD40 repeat-containing 98.1 0.0002 4.4E-09 80.1 20.3 121 345-486 32-155 (726)
333 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0085 1.8E-07 66.9 33.7 104 355-483 1-129 (353)
334 KOG1275 PAB-dependent poly(A) 98.1 5.4E-05 1.2E-09 86.5 15.7 184 419-635 146-341 (1118)
335 KOG2114 Vacuolar assembly/sort 98.1 0.00048 1E-08 78.8 22.1 203 812-1022 29-252 (933)
336 KOG0396 Uncharacterized conser 98.1 1.9E-05 4.2E-10 81.1 10.0 156 4-174 126-295 (389)
337 cd00216 PQQ_DH Dehydrogenases 98.1 0.0038 8.2E-08 72.8 30.4 155 853-1022 222-433 (488)
338 cd00216 PQQ_DH Dehydrogenases 98.1 0.0024 5.1E-08 74.6 28.5 211 420-639 61-322 (488)
339 PF08596 Lgl_C: Lethal giant l 98.1 0.00085 1.8E-08 74.5 23.4 280 741-1064 3-333 (395)
340 KOG3621 WD40 repeat-containing 98.0 0.00043 9.3E-09 77.6 20.4 157 740-920 77-244 (726)
341 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0012 2.6E-08 73.7 23.8 286 583-957 22-344 (353)
342 PF08596 Lgl_C: Lethal giant l 97.9 0.002 4.4E-08 71.6 23.8 268 348-635 3-334 (395)
343 KOG2066 Vacuolar assembly/sort 97.9 0.00038 8.2E-09 79.1 17.3 185 806-1013 39-233 (846)
344 PF14583 Pectate_lyase22: Olig 97.9 0.0074 1.6E-07 65.0 26.1 288 744-1066 40-381 (386)
345 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.06 1.3E-06 63.1 35.6 111 469-602 71-199 (527)
346 KOG1897 Damage-specific DNA bi 97.9 0.12 2.6E-06 61.1 49.6 468 454-1010 488-1001(1096)
347 KOG1008 Uncharacterized conser 97.9 5.1E-06 1.1E-10 90.9 1.8 204 345-592 55-275 (783)
348 PF04053 Coatomer_WDAD: Coatom 97.8 0.0021 4.6E-08 72.4 22.1 221 740-1015 33-264 (443)
349 PF06977 SdiA-regulated: SdiA- 97.8 0.0039 8.5E-08 64.1 21.5 218 841-1063 15-247 (248)
350 PF11768 DUF3312: Protein of u 97.8 0.0003 6.4E-09 77.9 13.6 130 338-490 197-334 (545)
351 PF04841 Vps16_N: Vps16, N-ter 97.8 0.013 2.8E-07 66.3 27.2 199 812-1022 34-255 (410)
352 PF06977 SdiA-regulated: SdiA- 97.8 0.019 4.1E-07 59.1 25.7 162 345-528 20-200 (248)
353 COG3391 Uncharacterized conser 97.7 0.01 2.2E-07 66.7 25.7 207 808-1022 75-292 (381)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.049 1.1E-06 63.8 31.9 149 871-1022 272-499 (527)
355 PF11768 DUF3312: Protein of u 97.7 0.0015 3.3E-08 72.4 18.1 114 806-922 205-331 (545)
356 PF04053 Coatomer_WDAD: Coatom 97.7 0.0073 1.6E-07 68.2 23.7 218 806-1069 32-265 (443)
357 PF04841 Vps16_N: Vps16, N-ter 97.6 0.11 2.4E-06 58.8 31.9 136 813-977 185-322 (410)
358 COG0823 TolB Periplasmic compo 97.6 0.0014 3.1E-08 73.5 15.7 184 806-1004 192-390 (425)
359 PF02897 Peptidase_S9_N: Proly 97.5 0.1 2.2E-06 60.1 29.8 246 349-639 126-407 (414)
360 KOG1008 Uncharacterized conser 97.4 0.00012 2.7E-09 80.5 4.8 250 807-1067 57-336 (783)
361 COG0823 TolB Periplasmic compo 97.4 0.0052 1.1E-07 69.1 17.7 163 342-532 188-361 (425)
362 PF14583 Pectate_lyase22: Olig 97.4 0.25 5.4E-06 53.5 29.2 228 353-627 42-303 (386)
363 PRK13616 lipoprotein LpqB; Pro 97.4 0.03 6.4E-07 66.0 24.5 204 847-1079 349-581 (591)
364 PF00780 CNH: CNH domain; Int 97.4 0.065 1.4E-06 57.6 25.6 231 749-1022 5-264 (275)
365 COG3391 Uncharacterized conser 97.4 0.19 4.1E-06 56.6 29.3 240 808-1069 32-286 (381)
366 PF02897 Peptidase_S9_N: Proly 97.3 0.11 2.4E-06 59.7 27.0 239 809-1069 126-407 (414)
367 PRK13616 lipoprotein LpqB; Pro 97.3 0.014 3E-07 68.7 19.3 188 807-1008 350-563 (591)
368 COG3386 Gluconolactonase [Carb 97.2 0.098 2.1E-06 56.1 23.5 220 813-1056 31-275 (307)
369 PF08553 VID27: VID27 cytoplas 97.2 0.0073 1.6E-07 71.8 16.3 151 465-635 492-646 (794)
370 PF03178 CPSF_A: CPSF A subuni 97.2 0.067 1.5E-06 58.9 23.0 175 827-1013 2-202 (321)
371 COG3490 Uncharacterized protei 97.2 0.041 9E-07 55.3 18.1 250 347-634 68-346 (366)
372 PF03178 CPSF_A: CPSF A subuni 97.1 0.11 2.4E-06 57.2 23.8 219 369-634 2-263 (321)
373 KOG4640 Anaphase-promoting com 97.1 0.002 4.3E-08 71.6 9.4 94 346-462 20-114 (665)
374 PF08553 VID27: VID27 cytoplas 97.1 0.024 5.2E-07 67.5 19.0 148 859-1012 492-646 (794)
375 PF00780 CNH: CNH domain; Int 97.1 0.18 3.8E-06 54.3 24.4 223 815-1069 4-258 (275)
376 COG3386 Gluconolactonase [Carb 97.1 0.17 3.7E-06 54.3 23.2 231 352-626 30-275 (307)
377 KOG2395 Protein involved in va 97.0 0.0089 1.9E-07 65.1 13.1 150 466-635 345-499 (644)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.15 3.2E-06 56.7 22.5 91 413-506 6-117 (415)
379 COG3490 Uncharacterized protei 97.0 0.13 2.9E-06 51.8 19.4 234 810-1063 71-345 (366)
380 TIGR03074 PQQ_membr_DH membran 96.8 2.1 4.6E-05 52.2 37.5 213 420-639 194-480 (764)
381 smart00320 WD40 WD40 repeats. 96.8 0.0027 5.9E-08 43.6 4.8 39 880-918 2-40 (40)
382 KOG4640 Anaphase-promoting com 96.7 0.0057 1.2E-07 68.1 9.0 92 806-899 20-114 (665)
383 PF14870 PSII_BNR: Photosynthe 96.7 0.99 2.1E-05 48.2 25.4 159 844-1010 141-301 (302)
384 KOG2079 Vacuolar assembly/sort 96.7 0.021 4.6E-07 67.7 13.2 104 419-528 98-202 (1206)
385 PF07995 GSDH: Glucose / Sorbo 96.6 0.94 2E-05 49.9 25.7 111 348-474 3-133 (331)
386 PF05096 Glu_cyclase_2: Glutam 96.6 0.23 5.1E-06 50.9 18.8 190 850-1055 47-250 (264)
387 COG3204 Uncharacterized protei 96.6 0.47 1E-05 48.7 20.5 198 738-964 84-307 (316)
388 KOG2395 Protein involved in va 96.6 0.072 1.6E-06 58.4 15.7 144 862-1012 348-499 (644)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 1 2.2E-05 50.2 24.8 40 983-1022 307-346 (415)
390 PHA02713 hypothetical protein; 96.5 0.27 5.8E-06 58.4 21.5 222 828-1077 273-542 (557)
391 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.19 4E-06 43.8 14.4 102 411-524 2-109 (111)
392 PF05096 Glu_cyclase_2: Glutam 96.4 1.3 2.7E-05 45.7 22.7 186 807-1001 45-249 (264)
393 PF14727 PHTB1_N: PTHB1 N-term 96.4 2.3 5E-05 47.6 32.4 289 751-1076 37-370 (418)
394 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.3 0.0028 6E-08 58.7 3.1 78 60-137 29-113 (133)
395 smart00320 WD40 WD40 repeats. 96.3 0.0076 1.7E-07 41.3 4.8 38 838-876 3-40 (40)
396 PRK10115 protease 2; Provision 96.3 2.5 5.5E-05 51.6 28.9 195 807-1013 127-344 (686)
397 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.25 5.4E-06 43.0 14.3 66 456-528 2-70 (111)
398 PF07995 GSDH: Glucose / Sorbo 96.3 1.5 3.4E-05 48.2 24.6 241 808-1061 3-330 (331)
399 PF15390 DUF4613: Domain of un 96.3 2.9 6.2E-05 47.3 27.2 57 896-957 344-401 (671)
400 PF05694 SBP56: 56kDa selenium 96.2 0.52 1.1E-05 51.6 19.7 191 811-1002 134-392 (461)
401 KOG4441 Proteins containing BT 96.2 0.6 1.3E-05 55.3 22.4 234 816-1077 283-555 (571)
402 PF10647 Gmad1: Lipoprotein Lp 96.2 0.7 1.5E-05 48.5 20.6 144 808-958 25-183 (253)
403 KOG2817 Predicted E3 ubiquitin 96.2 0.021 4.6E-07 60.4 8.7 102 4-107 127-241 (394)
404 PHA02713 hypothetical protein; 96.1 0.29 6.3E-06 58.1 19.4 188 816-1018 302-538 (557)
405 PF15390 DUF4613: Domain of un 96.1 0.13 2.8E-06 57.5 14.4 158 847-1015 19-188 (671)
406 PF10647 Gmad1: Lipoprotein Lp 95.9 0.44 9.5E-06 50.1 17.7 149 849-1006 25-188 (253)
407 PF14727 PHTB1_N: PTHB1 N-term 95.9 2.5 5.4E-05 47.4 23.8 198 702-921 145-361 (418)
408 COG3204 Uncharacterized protei 95.9 1.4 2.9E-05 45.5 19.5 170 886-1068 81-265 (316)
409 TIGR03074 PQQ_membr_DH membran 95.9 6.6 0.00014 48.1 39.8 125 469-602 196-354 (764)
410 PF12894 Apc4_WD40: Anaphase-p 95.8 0.031 6.7E-07 40.3 5.6 33 408-441 11-43 (47)
411 KOG2444 WD40 repeat protein [G 95.7 0.031 6.7E-07 54.7 7.2 104 818-921 70-178 (238)
412 KOG2079 Vacuolar assembly/sort 95.6 0.036 7.8E-07 65.8 8.6 102 361-485 101-203 (1206)
413 KOG2444 WD40 repeat protein [G 95.6 0.034 7.4E-07 54.4 6.9 108 905-1022 33-141 (238)
414 PF05694 SBP56: 56kDa selenium 95.4 4.7 0.0001 44.5 22.7 157 357-526 86-274 (461)
415 PRK10115 protease 2; Provision 95.3 10 0.00022 46.5 33.4 245 740-1017 127-398 (686)
416 KOG4499 Ca2+-binding protein R 95.3 0.75 1.6E-05 45.3 14.7 90 810-900 161-263 (310)
417 KOG4499 Ca2+-binding protein R 95.1 3.2 6.9E-05 41.1 18.3 48 568-617 217-264 (310)
418 KOG4441 Proteins containing BT 95.1 1.1 2.4E-05 53.1 18.9 193 810-1018 326-551 (571)
419 PF12894 Apc4_WD40: Anaphase-p 95.1 0.081 1.8E-06 38.2 5.8 34 983-1017 11-44 (47)
420 PF14870 PSII_BNR: Photosynthe 94.8 6.7 0.00015 42.0 30.7 231 808-1063 63-301 (302)
421 PF10168 Nup88: Nuclear pore c 94.8 4.7 0.0001 48.9 23.1 94 805-921 83-180 (717)
422 PHA03098 kelch-like protein; P 94.7 1.5 3.2E-05 52.4 19.1 187 816-1017 293-515 (534)
423 PF04494 TFIID_90kDa: WD40 ass 94.5 0.034 7.4E-07 52.1 3.6 64 60-123 40-103 (142)
424 PHA02790 Kelch-like protein; P 94.5 2.1 4.5E-05 50.0 19.0 184 816-1016 270-473 (480)
425 PRK13684 Ycf48-like protein; P 94.4 9.8 0.00021 41.9 28.3 156 890-1065 172-330 (334)
426 COG3823 Glutamine cyclotransfe 94.4 2.1 4.5E-05 41.6 14.7 173 817-1001 55-247 (262)
427 PRK13684 Ycf48-like protein; P 94.1 11 0.00024 41.5 29.9 156 847-1012 172-330 (334)
428 TIGR03118 PEPCTERM_chp_1 conse 94.1 8.8 0.00019 40.1 22.7 229 410-647 24-289 (336)
429 PHA03098 kelch-like protein; P 94.0 3 6.5E-05 49.8 19.6 192 859-1075 294-518 (534)
430 KOG1898 Splicing factor 3b, su 93.9 20 0.00044 43.8 31.1 105 812-920 939-1048(1205)
431 PF12234 Rav1p_C: RAVE protein 93.8 2.1 4.5E-05 50.3 16.6 125 454-591 30-155 (631)
432 PF13449 Phytase-like: Esteras 93.7 13 0.00029 40.8 22.8 165 847-1013 19-249 (326)
433 PF12234 Rav1p_C: RAVE protein 93.6 1.2 2.7E-05 52.1 14.4 120 847-968 29-155 (631)
434 PLN00033 photosystem II stabil 93.4 16 0.00035 41.0 27.4 153 850-1010 241-396 (398)
435 COG4257 Vgb Streptogramin lyas 93.3 9.4 0.0002 39.0 17.7 192 850-1069 64-265 (353)
436 COG3823 Glutamine cyclotransfe 93.2 2.4 5.3E-05 41.1 13.0 183 859-1055 55-248 (262)
437 KOG3630 Nuclear pore complex, 93.1 0.96 2.1E-05 54.7 12.4 146 806-957 100-260 (1405)
438 TIGR02604 Piru_Ver_Nterm putat 93.0 3.6 7.8E-05 46.2 16.9 147 892-1058 15-205 (367)
439 KOG1916 Nuclear protein, conta 93.0 0.15 3.2E-06 59.5 5.6 164 344-534 130-328 (1283)
440 KOG2247 WD40 repeat-containing 93.0 0.022 4.7E-07 61.7 -0.8 148 743-919 38-187 (615)
441 COG5167 VID27 Protein involved 93.0 3.3 7.1E-05 45.7 15.1 150 464-636 477-632 (776)
442 TIGR02604 Piru_Ver_Nterm putat 92.7 3 6.6E-05 46.7 15.8 151 848-1004 14-204 (367)
443 KOG1898 Splicing factor 3b, su 92.5 33 0.00071 42.1 39.0 113 944-1069 937-1051(1205)
444 COG4257 Vgb Streptogramin lyas 92.5 14 0.00031 37.8 22.0 242 805-1077 60-317 (353)
445 KOG1916 Nuclear protein, conta 92.3 0.13 2.7E-06 60.0 3.9 178 827-1012 153-373 (1283)
446 PF10168 Nup88: Nuclear pore c 92.2 3.8 8.2E-05 49.7 16.2 84 983-1069 84-182 (717)
447 PHA02790 Kelch-like protein; P 92.0 9.4 0.0002 44.6 19.1 185 859-1069 271-473 (480)
448 KOG2280 Vacuolar assembly/sort 91.9 13 0.00029 43.6 19.0 182 808-1011 85-278 (829)
449 PF10214 Rrn6: RNA polymerase 91.6 45 0.00097 41.6 25.6 174 805-1015 78-278 (765)
450 KOG2280 Vacuolar assembly/sort 90.9 24 0.00051 41.6 19.7 180 828-1022 65-255 (829)
451 PF03022 MRJP: Major royal jel 90.9 19 0.00042 38.5 18.5 194 809-1003 3-255 (287)
452 KOG3616 Selective LIM binding 90.8 5.7 0.00012 45.8 14.6 77 408-493 14-90 (1636)
453 PF10313 DUF2415: Uncharacteri 90.8 0.97 2.1E-05 31.6 5.4 32 409-440 1-35 (43)
454 TIGR03118 PEPCTERM_chp_1 conse 90.7 24 0.00053 37.0 23.2 205 809-1022 25-288 (336)
455 PF05935 Arylsulfotrans: Aryls 90.7 16 0.00035 42.5 19.2 147 868-1024 126-312 (477)
456 KOG3630 Nuclear pore complex, 90.6 3.7 7.9E-05 50.1 13.4 100 808-909 157-262 (1405)
457 PF08513 LisH: LisH; InterPro 90.5 0.16 3.4E-06 31.7 1.3 18 3-20 10-27 (27)
458 KOG2377 Uncharacterized conser 90.2 6.9 0.00015 42.7 13.8 143 850-1001 25-171 (657)
459 PF14761 HPS3_N: Hermansky-Pud 90.2 20 0.00043 35.7 16.1 146 861-1012 29-213 (215)
460 PF14761 HPS3_N: Hermansky-Pud 90.2 18 0.00038 36.1 15.7 112 808-922 19-165 (215)
461 COG5276 Uncharacterized conser 90.0 26 0.00057 36.4 19.1 187 818-1014 96-286 (370)
462 PF08728 CRT10: CRT10; InterP 90.0 14 0.00031 44.0 17.5 116 410-528 102-245 (717)
463 PF08728 CRT10: CRT10; InterP 89.9 7.3 0.00016 46.3 15.1 186 420-635 49-245 (717)
464 COG1520 FOG: WD40-like repeat 89.2 43 0.00092 37.7 21.8 200 814-1022 65-277 (370)
465 PF10313 DUF2415: Uncharacteri 89.2 1.2 2.5E-05 31.2 4.9 33 347-379 1-35 (43)
466 PF07676 PD40: WD40-like Beta 89.2 1.3 2.9E-05 30.5 5.4 33 342-374 4-38 (39)
467 PF11725 AvrE: Pathogenicity f 88.9 64 0.0014 42.1 22.6 390 345-873 361-767 (1774)
468 COG1520 FOG: WD40-like repeat 88.7 28 0.00061 39.1 18.8 203 862-1077 70-279 (370)
469 KOG2377 Uncharacterized conser 88.7 13 0.00028 40.7 14.5 159 894-1069 26-188 (657)
470 PF14781 BBS2_N: Ciliary BBSom 88.5 19 0.00042 32.7 13.9 118 460-600 5-133 (136)
471 COG4590 ABC-type uncharacteriz 88.4 2 4.3E-05 46.5 8.4 159 805-973 219-390 (733)
472 smart00667 LisH Lissencephaly 88.3 0.25 5.3E-06 32.8 1.2 22 2-23 12-33 (34)
473 PF07569 Hira: TUP1-like enhan 87.8 3.2 6.9E-05 42.3 9.4 75 352-440 16-97 (219)
474 KOG4460 Nuclear pore complex, 87.2 18 0.00039 40.5 14.7 94 507-601 111-207 (741)
475 COG4590 ABC-type uncharacteriz 87.2 5.9 0.00013 43.1 11.0 171 839-1018 212-391 (733)
476 PF13449 Phytase-like: Esteras 87.2 32 0.00068 37.8 17.5 173 738-920 18-249 (326)
477 KOG4659 Uncharacterized conser 87.0 97 0.0021 39.2 34.4 23 738-760 660-682 (1899)
478 KOG1900 Nuclear pore complex, 86.4 8.6 0.00019 48.1 13.1 147 867-1014 96-273 (1311)
479 KOG1983 Tomosyn and related SN 86.3 11 0.00023 48.0 14.5 67 944-1017 202-268 (993)
480 PF07569 Hira: TUP1-like enhan 86.2 3.5 7.5E-05 42.0 8.6 78 898-975 18-101 (219)
481 PF12768 Rax2: Cortical protei 85.1 28 0.0006 36.9 14.8 114 369-505 16-144 (281)
482 KOG1900 Nuclear pore complex, 84.5 12 0.00027 46.7 13.3 171 333-531 65-274 (1311)
483 KOG3616 Selective LIM binding 84.3 7.4 0.00016 44.9 10.5 30 608-637 16-45 (1636)
484 PLN00033 photosystem II stabil 84.1 79 0.0017 35.6 32.4 151 893-1063 241-396 (398)
485 PRK13615 lipoprotein LpqB; Pro 83.9 98 0.0021 36.5 21.7 153 850-1013 336-502 (557)
486 PF12657 TFIIIC_delta: Transcr 83.4 5 0.00011 39.3 8.0 31 409-439 86-122 (173)
487 PF14781 BBS2_N: Ciliary BBSom 83.0 37 0.00081 31.0 12.9 114 897-1020 5-132 (136)
488 PF02333 Phytase: Phytase; In 82.9 82 0.0018 34.9 21.7 202 418-642 66-296 (381)
489 COG3292 Predicted periplasmic 82.2 1E+02 0.0022 35.5 24.0 71 408-486 164-234 (671)
490 smart00036 CNH Domain found in 82.0 81 0.0018 34.2 24.8 210 805-1022 41-279 (302)
491 TIGR03606 non_repeat_PQQ dehyd 81.9 32 0.00069 39.2 14.5 110 891-1004 30-166 (454)
492 KOG2063 Vacuolar assembly/sort 81.3 98 0.0021 38.3 18.9 249 745-1021 20-276 (877)
493 KOG1983 Tomosyn and related SN 81.0 48 0.001 42.3 17.1 36 346-382 35-70 (993)
494 PF08801 Nucleoporin_N: Nup133 80.8 41 0.00088 38.7 15.6 30 985-1014 191-220 (422)
495 PRK13614 lipoprotein LpqB; Pro 80.7 1.3E+02 0.0028 35.7 19.4 161 849-1015 344-520 (573)
496 PF05935 Arylsulfotrans: Aryls 80.4 47 0.001 38.7 15.9 128 946-1077 153-312 (477)
497 KOG1924 RhoA GTPase effector D 80.3 8.3 0.00018 45.0 9.1 14 128-141 421-434 (1102)
498 TIGR03606 non_repeat_PQQ dehyd 80.2 49 0.0011 37.8 15.3 63 345-420 28-90 (454)
499 COG5290 IkappaB kinase complex 79.9 43 0.00094 39.6 14.4 212 847-1084 112-384 (1243)
500 TIGR03548 mutarot_permut cycli 79.9 1E+02 0.0022 33.9 21.1 66 951-1017 123-198 (323)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-66 Score=518.99 Aligned_cols=483 Identities=21% Similarity=0.322 Sum_probs=384.2
Q ss_pred cchhHHhHHHHHHHHhhhcCCCcc---HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCH
Q 001311 2 RKSSKKLFTSKHFLLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 78 (1102)
Q Consensus 2 ~~~~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 78 (1102)
|-|+..||.+|+.+||.|||+.+. ++.|.+.||+|+|+.++..+..+. +++.....++.|++.||+|||++..|..
T Consensus 26 q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~fLEf~k~~~i 104 (519)
T KOG0293|consen 26 QILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIFLEFLKTGSI 104 (519)
T ss_pred HHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHHHHHHhhccH
Confidence 568999999999999999999996 999999999999999999998884 4445445559999999999999999999
Q ss_pred HHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccchHH
Q 001311 79 AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSR 158 (1102)
Q Consensus 79 ~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~r 158 (1102)
..|+.+||+.+.+|.. +.++|++|..-|..++-....+...-......|.+|+++|+++|||++| ||++|
T Consensus 105 s~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il---------lP~rR 174 (519)
T KOG0293|consen 105 SHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL---------LPKRR 174 (519)
T ss_pred hhhhHhhhcchhhhhh-hHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc---------CChHH
Confidence 9999999999999765 8999999988877655443222111112467899999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001311 159 LRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPL 238 (1102)
Q Consensus 159 L~~ll~q~~~~q~~~~~~~~~~~~~~sl~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1102)
|++||+||++||++.|+|||. .+..|||+||.|++ .++| .
T Consensus 175 LehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~---------------~qip----------------~-------- 214 (519)
T KOG0293|consen 175 LEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR---------------LQIP----------------S-------- 214 (519)
T ss_pred HHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc---------------ccCC----------------c--------
Confidence 999999999999999999994 77799999999999 7887 1
Q ss_pred ccccCCCCCCCCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCccccCCccccccccCC
Q 001311 239 AGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTG 318 (1102)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~ 318 (1102)
.+.+
T Consensus 215 --------------------------qt~q-------------------------------------------------- 218 (519)
T KOG0293|consen 215 --------------------------QTWQ-------------------------------------------------- 218 (519)
T ss_pred --------------------------hhhh--------------------------------------------------
Confidence 1111
Q ss_pred CCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCcc
Q 001311 319 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP 398 (1102)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1102)
T Consensus 219 -------------------------------------------------------------------------------- 218 (519)
T KOG0293|consen 219 -------------------------------------------------------------------------------- 218 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311 399 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478 (1102)
Q Consensus 399 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 478 (1102)
++..|.++|+-+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ +|++|+.|..
T Consensus 219 ----il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~ 292 (519)
T KOG0293|consen 219 ----ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEV 292 (519)
T ss_pred ----hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHh
Confidence 1233333444444444444444444444444444443333555667999999999999999999 7999999999
Q ss_pred EEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 479 IKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
+++||+.+|.+.+.+. +|...+.+++|. +||..+++|+.|+++..||++.... ..+
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~---------------------~~W 349 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNIL---------------------GNW 349 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcchh---------------------hcc
Confidence 9999999999988774 456888999985 5668899999999999999985331 223
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
.+.+...+..+++++||.++++.+.|..|++++.++......+..+. .|++.++|.|++++++.-.+..+++||+..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 34444566777777777889999999999999998877665555443 599999999999999999999999999985
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
. ..++.+.||...
T Consensus 427 ~-~lv~kY~Ghkq~------------------------------------------------------------------ 439 (519)
T KOG0293|consen 427 N-KLVRKYFGHKQG------------------------------------------------------------------ 439 (519)
T ss_pred h-hHHHHhhccccc------------------------------------------------------------------
Confidence 5 556555554321
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 797 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1102)
.+++
T Consensus 440 ----------------------------------~fiI------------------------------------------ 443 (519)
T KOG0293|consen 440 ----------------------------------HFII------------------------------------------ 443 (519)
T ss_pred ----------------------------------ceEE------------------------------------------
Confidence 1111
Q ss_pred cccCCCCCCCCeeEEEEe-cCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 798 NDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 798 ~~~~~~~~~~~i~~l~~s-~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
.-||. .+..++++|+ |+.|+||+..+++.+.++.||...|+|++|+|.+..++|+|++||+|+||
T Consensus 444 -------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 444 -------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred -------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 11121 3557899999 99999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q 001311 876 NVRV 879 (1102)
Q Consensus 876 d~~~ 879 (1102)
....
T Consensus 511 g~~~ 514 (519)
T KOG0293|consen 511 GPSD 514 (519)
T ss_pred cCCc
Confidence 8653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-60 Score=458.36 Aligned_cols=451 Identities=20% Similarity=0.303 Sum_probs=376.1
Q ss_pred CcchhHHhHHHHHHHHhhhcCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCC
Q 001311 1 MRKSSKKLFTSKHFLLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKH 76 (1102)
Q Consensus 1 ~~~~~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~ 76 (1102)
+|-|.|..+++++++||+|+++.|| +..|-+.|-+|+||.+++.++.| ++|++ -+..+|||..|||+|.+
T Consensus 15 ~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqivlEliELR 88 (508)
T KOG0275|consen 15 EQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQIVLELIELR 88 (508)
T ss_pred HHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHHHHHHHHHH
Confidence 3668899999999999999999998 89999999999999999999999 88887 56889999999999999
Q ss_pred CHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccccccccccccCCC-chhH-HHHHHHHHHhhcccCcccccccCCC
Q 001311 77 DRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSA-RSIMLVELKKLIEANPLFRDKLQFP 152 (1102)
Q Consensus 77 ~~~~a~~~l~~~--~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~~-R~~l~~~l~~~i~~~~~~~~~~~~~ 152 (1102)
+...|..+||+- +.-|+..++|+|-+|..||..+.++.++. |.+ .++. |..+.+.|...+..
T Consensus 89 EL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~V----------- 154 (508)
T KOG0275|consen 89 ELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVHV----------- 154 (508)
T ss_pred hhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceEE-----------
Confidence 999999999984 66667889999999999999999999998 655 4554 58888888888887
Q ss_pred ccchHHHHHHHHHHHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 001311 153 NLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPA 232 (1102)
Q Consensus 153 ~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~sl~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 232 (1102)
+||+||..||.||++||++ . |.+|++..+| +|+..+|
T Consensus 155 -VppSRLlaLlGQaLKWQqH-Q-----------------------------------GLLPPGt~iD------LFRGkAA 191 (508)
T KOG0275|consen 155 -VPPSRLLALLGQALKWQQH-Q-----------------------------------GLLPPGTTID------LFRGKAA 191 (508)
T ss_pred -cChHHHHHHHHHHhhhHhh-c-----------------------------------CCCCCCceee------eccchhh
Confidence 9999999999999999998 2 6889888888 8887744
Q ss_pred CCCCCcccccCCCCCCCCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCccccCCcccc
Q 001311 233 PVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVL 312 (1102)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 312 (1102)
-. ...+|-
T Consensus 192 ~K-----------------------------------------------------------------~~~Ee~------- 199 (508)
T KOG0275|consen 192 MK-----------------------------------------------------------------DQEEER------- 199 (508)
T ss_pred hh-----------------------------------------------------------------hhHhhh-------
Confidence 10 001111
Q ss_pred ccccCCCCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeecc
Q 001311 313 PVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL 392 (1102)
Q Consensus 313 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~ 392 (1102)
|+..- .....++.++.+.|..|||||+| |++|+.||.|.|||+.+|+......++.-|
T Consensus 200 ---~Pt~l-----------------~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd- 257 (508)
T KOG0275|consen 200 ---YPTQL-----------------ARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQD- 257 (508)
T ss_pred ---chHHh-----------------hhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhc-
Confidence 11000 00114566778899999999997 999999999999999999887654443222
Q ss_pred CCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEE
Q 001311 393 GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 472 (1102)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 472 (1102)
.+..|.++|.|++||.|..+||+|+.||.|+||.+.+|.|++.+ -+.|+..|+|+.|+.|+. -+++
T Consensus 258 ----------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS 323 (508)
T KOG0275|consen 258 ----------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILS 323 (508)
T ss_pred ----------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhc
Confidence 47788999999999999999999999999999999999998853 238999999999999999 5999
Q ss_pred ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC--eeeEEEEc
Q 001311 473 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--WCTTMAYS 550 (1102)
Q Consensus 473 ~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s 550 (1102)
++.|.+++|.-+.+|++++.++||...|+...| .++|..+++++.||+|++|+..+.++..++...+. .|.++...
T Consensus 324 ~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 324 ASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred ccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999999999999999999999999999887 57778999999999999999999999887765432 45555554
Q ss_pred cCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC-CCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311 551 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNG 629 (1102)
Q Consensus 551 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 629 (1102)
|... ..++.+...++|+|.++ .|+.+..+.. ....+...+++++|.|.++.+.+.|+.
T Consensus 402 PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 402 PKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred CCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE
Confidence 4433 57888889999999998 5777777753 233345778899999999999999999
Q ss_pred EEEEEccCCccceeecc
Q 001311 630 IKILATSDGIRLLRTFE 646 (1102)
Q Consensus 630 i~iwd~~~~~~~~~~~~ 646 (1102)
++.+.+.+| .+-+.+.
T Consensus 461 lYCF~~~sG-~LE~tl~ 476 (508)
T KOG0275|consen 461 LYCFSVLSG-KLERTLP 476 (508)
T ss_pred EEEEEeecC-ceeeeee
Confidence 999999888 4444443
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-56 Score=478.57 Aligned_cols=574 Identities=15% Similarity=0.232 Sum_probs=471.4
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeE-EeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 430 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 430 (1102)
++|+++|+. |++... ..|.+-|+.+++.. .. .-......|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999996 776653 46888999998773 21 2344567899999999999999999999
Q ss_pred eEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC
Q 001311 431 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 509 (1102)
Q Consensus 431 ~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~ 509 (1102)
.+++|++.+++.++. ++. |++||.-++|+|.+. ++++||.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~irs---wKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRS---WKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhHh---HhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 999999999987764 555 999999999999997 89999999999999999999999999999999999999988
Q ss_pred CccEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001311 510 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588 (1102)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 588 (1102)
+...|++|..|+++++||+.+... ...+..|...|+++.|++|+. .++++|.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888899999999999999996554 667778888888888877764 6899999999999
Q ss_pred EECCCcceEEEEcCCCCCCCcCeEEEcCC-----CCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCc
Q 001311 589 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 663 (1102)
Q Consensus 589 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1102)
||+.+.+...+++.... +-++.+-++ +.++++.+.+|.+++||..++. +.........+ .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~-~~~~~~~~~~~----------e~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK-CVYKQRQSDSE----------EI 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccch-hhhhhccCCch----------hh
Confidence 99988877777765544 666777776 6799999999999999998883 33222211000 00
Q ss_pred ccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceE
Q 001311 664 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 743 (1102)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 743 (1102)
. ..........++....|..+.++|.++.....++ .|..+.|.
T Consensus 285 -----------------------------~-~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~ 327 (775)
T KOG0319|consen 285 -----------------------------D-HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEIL 327 (775)
T ss_pred -----------------------------h-cceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhhe
Confidence 0 0111122345566667788999987765443333 35778899
Q ss_pred EEEE-ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311 744 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 822 (1102)
Q Consensus 744 ~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la 822 (1102)
++.| .|+.++++++++.+.+++|++.+... + .+. +|...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------------------~----ii~--GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC--------------------Q----IIP--GHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCce--------------------E----EEe--CchhheeeeeecccCcEEE
Confidence 9988 46778899999999999997633111 1 122 3999999999888889999
Q ss_pred EEe-CCeEEEEEcCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee---------eeeecc
Q 001311 823 SAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKG 888 (1102)
Q Consensus 823 s~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---------~~~l~~ 888 (1102)
+++ |.++++|.++... ++....+|.+.|.+++++.....++++++.|+++++|++...+. ......
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 9999999884432 34567899999999999886678999999999999999976221 123357
Q ss_pred ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001311 889 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 967 (1102)
Q Consensus 889 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd 967 (1102)
|...|++++.+|+.+++||||.|++.+||+++.. .....+.||.. .|.++.|++..+.+++ +.|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCc-----eEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 9999999999999999999999999999999953 45777888885 8999999999999999 5999999999
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
+.+..|++++. ||...|..+.|-.+|+.|++++.||.|++|++.++++++.+. .|.+. |+ +++-+| +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence 99999999998 899999999999999999999999999999999999999887 55455 88 666677 4
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001311 1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
..+++||+.||.|.+|.-.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999876654
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-55 Score=473.74 Aligned_cols=546 Identities=13% Similarity=0.192 Sum_probs=452.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCC-CCCCeEEEEEccCCCeE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 423 (1102)
..+.|++++.+||+++ |++++....+++|++.+++.+.. .+. |+++|.-++|+|.|.+|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 4679999999999996 89999999999999999977663 455 99999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecCCCCeEE
Q 001311 424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS 502 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h~~~v~~ 502 (1102)
|+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-...+|++|+.|+++++||+.+.. ++.++..|...|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999988765 59999999999999999876679999999999999999654 48888999999999
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+.|.. |+..+++++.|..+.+||+..-+....++.. ..+.++.+.+++. ...+.+++++|.
T Consensus 198 L~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 99854 4678999999999999999665555444332 2344444433311 011468999999
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1102)
+|.+++||.++++++....... ...+..+...+....++..+.|..+.++|..+. ++.+.+-|..+.+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 9999999999998876655332 223666666676667777788999999998888 78888888777654 2
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311 663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 742 (1102)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 742 (1102)
....+ ++...++.++....+|++++.+.... .+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence 33333 56788999999999999987764333 22 5699999
Q ss_pred EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeE
Q 001311 743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 821 (1102)
Q Consensus 743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~l 821 (1102)
.++....+|..|++++.|.++++|.++.+.. ..... -...+|.+.|.+++++..+ .++
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeecccCccEE
Confidence 9999888888999999999999998732211 00111 1223599999999998765 478
Q ss_pred EEEe-CCeEEEEEcCCCc---------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311 822 MSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 822 as~s-dg~I~iwd~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
++++ |.++++|++...+ +..+...|...|++++++| +.+++|+|+.|.+.+||++.......+|.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 9999999987511 1123457999999999999 899999999999999999999999999999999
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 970 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~ 970 (1102)
.|+++.|++..+.|+|+|.|++|+||.+++ ..+++.+.||.. .|..+.|-.+|++|++ +.||.+++|++++
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999998 457889999985 8999999999999999 5999999999999
Q ss_pred ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 971 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
++|+.++. .|.+.|++++.+++..++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999876 8999999999999999999999999999996433
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-51 Score=436.54 Aligned_cols=600 Identities=18% Similarity=0.291 Sum_probs=458.7
Q ss_pred cccccCCCCCcC-CCCcCCCCCCCCCccceee--ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeee
Q 001311 312 LPVSFTGHSHSH-SHSQAFSTPEDLPKTVTRT--LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 388 (1102)
Q Consensus 312 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~ 388 (1102)
-.+.|++++... ++.-...+..++.++...+ +.+...|++++.||+|.. |++-...|...+-++.....++...|
T Consensus 18 Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f- 95 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF- 95 (893)
T ss_pred CcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee-
Confidence 444577776533 2222222233334444444 458999999999999996 66667789999999988888876544
Q ss_pred eeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce-----eeeEEEeeccccCEEEEEEcC
Q 001311 389 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSH 463 (1102)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~ 463 (1102)
+.+|.|+.|||||+++|+|.. ..+.||....... .....++.+|-..|.++.|+.
T Consensus 96 -------------------k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~ 155 (893)
T KOG0291|consen 96 -------------------KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD 155 (893)
T ss_pred -------------------cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc
Confidence 458999999999999998864 5699998654322 334567889999999999999
Q ss_pred CCCeeEEEEecCCCcEEEEeCCCCee--eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeee-----
Q 001311 464 PNKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----- 536 (1102)
Q Consensus 464 d~~~~~l~s~~~d~~i~vWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----- 536 (1102)
|.+ +|++|+.|.++++|+++..+- .+.+.+|.+.|.+.-| ..+...+++.+.||.+.+|..........
T Consensus 156 DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd 231 (893)
T KOG0291|consen 156 DSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD 231 (893)
T ss_pred CCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCccccccccc
Confidence 999 899999999999999987666 5678999999987666 44556899999999999998773211100
Q ss_pred ecC---------CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311 537 YEA---------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 607 (1102)
Q Consensus 537 ~~~---------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 607 (1102)
..+ ....+..+.|..- ++.+-......+++.+|++..+.|+++-..|...+|++....+++.+....+
T Consensus 232 ~eg~~d~~~~~~~Eek~~~~~~~k~-~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~-- 308 (893)
T KOG0291|consen 232 EEGSDDEEMDEDGEEKTHKIFWYKT-KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ-- 308 (893)
T ss_pred ccccccccccccchhhhcceEEEEE-EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--
Confidence 000 0001111111111 1222222336889999999999999999999999999999999999986654
Q ss_pred CcCeEEEcCCCCEEEEEECC-CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311 608 ASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 686 (1102)
Q Consensus 608 ~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1102)
.|..++|+..|.+|+.|+.. |.+.+|+..+. ..+...
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQ----------------------------------------- 346 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQ----------------------------------------- 346 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeec-----------------------------------------
Confidence 69999999999999999864 78999987665 222111
Q ss_pred cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311 687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 766 (1102)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 766 (1102)
++|...+.+++++|||+++++|+.||.|+||
T Consensus 347 -------------------------------------------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 347 -------------------------------------------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred -------------------------------------------------cccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3488899999999999999999999999999
Q ss_pred eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC
Q 001311 767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 845 (1102)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~ 845 (1102)
|. .+|.+... +. .|.+.|+.+.|+..|+.+++.+ ||+|+.||+...+..+++..
T Consensus 378 n~----------------------~SgfC~vT-Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 378 NT----------------------QSGFCFVT-FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred ec----------------------cCceEEEE-ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 86 33333221 22 2999999999999999999999 99999999999999999875
Q ss_pred CCC-CeeEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311 846 PPP-AATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 923 (1102)
Q Consensus 846 ~~~-~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 923 (1102)
... ...|++..| .|.++..|+.|. .|+||++++|+++..+.||.++|.+++|+|++..|||++.|.+|++||+-...
T Consensus 433 P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 433 PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence 543 577888988 788998888876 89999999999999999999999999999999999999999999999987632
Q ss_pred ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccC------------------CCCC
Q 001311 924 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR------------------ESSA 984 (1102)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------------------~h~~ 984 (1102)
. ....+... ..+..++|+|||+.|+++ -||.|.+||+..+..+..+... ....
T Consensus 512 ~-~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K 583 (893)
T KOG0291|consen 512 G-TVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK 583 (893)
T ss_pred c-eeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence 1 12223222 367999999999999995 8999999999887766443211 1246
Q ss_pred CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc------------------c--------------------
Q 001311 985 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------------------Y-------------------- 1026 (1102)
Q Consensus 985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~------------------~-------------------- 1026 (1102)
..+.+++|+||.+|++|+....|++|++.++.+++++..+. +
T Consensus 584 ~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~ 663 (893)
T KOG0291|consen 584 TFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIA 663 (893)
T ss_pred ceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccccccc
Confidence 78999999999999999999999999999998888765211 0
Q ss_pred c--------CCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1027 L--------PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1027 ~--------~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+ ...+....|.+.++.|+| .|+-++.++..| |.||.+.+
T Consensus 664 lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 664 LPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred CCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 0 011223356778999999 478888887766 45666543
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-50 Score=414.20 Aligned_cols=577 Identities=14% Similarity=0.162 Sum_probs=435.0
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
.-.-+.-.|.|+.++.+.+ +.|.+-+++...... ++.+|...++-..|||.|.|+|+|.
T Consensus 20 ~~~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD 78 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGD 78 (603)
T ss_pred cceEeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecC
Confidence 3344556778888888766 678888888766544 5889999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCeeeEEeecCCCCeEEEee
Q 001311 428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505 (1102)
Q Consensus 428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~ 505 (1102)
..|+|+|||....+.+ ...+++.-.++|..|+|+.|+++ |+..+ .++..+++-.++|.-+..+.||...|+++.|
T Consensus 79 ~sG~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~ 155 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF 155 (603)
T ss_pred CcCcEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence 9999999999875433 22357777899999999999996 44433 4444555555688899999999999999998
Q ss_pred eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe
Q 001311 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 585 (1102)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 585 (1102)
-++.. -.+++|+.|++|.+|+-..-+-...+..|...|.+ +.|+|||.++++++.||.
T Consensus 156 KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~---------------------VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 156 KPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNC---------------------VRYSPDGSRFATAGSDGK 213 (603)
T ss_pred cCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceee---------------------EEECCCCCeEEEecCCcc
Confidence 66543 57999999999999964433333333444444544 455555568999999999
Q ss_pred EEEEECCCcceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311 586 IKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 664 (1102)
Q Consensus 586 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1102)
|.+||-.+|+.+..+. ...|.+.|.+++|+||+..+++++.|.+++|||+.+. .+++.+.-.... .
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v-~----------- 280 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV-E----------- 280 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch-h-----------
Confidence 9999999999999987 3445668999999999999999999999999999988 666655321110 0
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311 665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 744 (1102)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 744 (1102)
...+........|++.+.+|.+.+++....... +.+ .+|...|++
T Consensus 281 ----------------------------dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~---~~i----~GHnK~ITa 325 (603)
T KOG0318|consen 281 ----------------------------DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL---KVI----SGHNKSITA 325 (603)
T ss_pred ----------------------------ceEEEEEEeCCeEEEEEcCcEEEEecccCCChh---hee----cccccceeE
Confidence 011112223678899999999999998875522 111 579999999
Q ss_pred EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEE
Q 001311 745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 824 (1102)
Q Consensus 745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~ 824 (1102)
+..++++++|++++.||.|.-|+...+ .. ..+.+..|...|.+++.+..+.++.++
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g----------------------~~--~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSG----------------------TS--DRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCc----------------------cc--cccccccccceEEEEeecCCCcEEEEe
Confidence 999999999999999999999986432 11 113334599999999999888887777
Q ss_pred eCCeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCC
Q 001311 825 SGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 902 (1102)
Q Consensus 825 sdg~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 902 (1102)
-|.++++.++........ ++ -.....+++..+ ++.+++..+.++.+.+=|...- ..+. -.-...+++++|++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~---~~~~-~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKV---SSIP-IGYESSAVAVSPDG 455 (603)
T ss_pred cCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcc---eeec-cccccceEEEcCCC
Confidence 799999999865443322 12 122344888888 7767776766655554443321 2221 22346789999999
Q ss_pred CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCC
Q 001311 903 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRE 981 (1102)
Q Consensus 903 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 981 (1102)
..++.|+.|+.|+||.+...+......... |. ++|+.++||||+.|||++ ..+.+.+||+.+.+.... ...-
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~F 528 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAF 528 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeee
Confidence 999999999999999999866433322222 22 489999999999999997 788999999999887333 2235
Q ss_pred CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEE
Q 001311 982 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus 982 h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
|...|.+++|||+.+++|+|+.|-.|.||+++.-.....++ ..|... |+ .+.|. |...|++.+.|..|+
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK 597 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIK 597 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeE
Confidence 89999999999999999999999999999998776554443 233334 66 88888 468999999999999
Q ss_pred EEecc
Q 001311 1062 VFEPL 1066 (1102)
Q Consensus 1062 vW~~~ 1066 (1102)
+|++.
T Consensus 598 ~W~v~ 602 (603)
T KOG0318|consen 598 VWNVT 602 (603)
T ss_pred Eeccc
Confidence 99974
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-54 Score=425.89 Aligned_cols=374 Identities=20% Similarity=0.339 Sum_probs=303.3
Q ss_pred CCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311 331 TPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 410 (1102)
Q Consensus 331 ~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1102)
......++....-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.|..... +.++|...
T Consensus 100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~W 159 (480)
T KOG0271|consen 100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNW 159 (480)
T ss_pred cccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccE
Confidence 444445555556789999999999999997 9999999999999999987776 58999999
Q ss_pred eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-----CCCeeEEEEecCCCcEEEEeCC
Q 001311 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWDAT 485 (1102)
Q Consensus 411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----d~~~~~l~s~~~d~~i~vWd~~ 485 (1102)
|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+.
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEcc
Confidence 99999999999999999999999999999998754 5899999999999965 455 79999999999999999
Q ss_pred CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
.+.++..+.||+.+|+|++|- ++ .+|++|+.|++|++|+...+.....+.+|...|+.++.+.|--
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~----------- 301 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV----------- 301 (480)
T ss_pred CceEEEEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-----------
Confidence 999999999999999999982 33 5999999999999999999889999999999999998876532
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 645 (1102)
|-+|.-|.+=+-....+......+.. .....-..+..|++|++|.++.+|+.....+++..
T Consensus 302 -----------LRtgaf~~t~~~~~~~se~~~~Al~r-------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r- 362 (480)
T KOG0271|consen 302 -----------LRTGAFDHTGRKPKSFSEEQKKALER-------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR- 362 (480)
T ss_pred -----------hhccccccccccCCChHHHHHHHHHH-------HHHhhccCcceeEEecCCceEEEecccccccchhh-
Confidence 22222221100000000000000000 00111123356666666666666653222111110
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCC
Q 001311 646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 725 (1102)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 725 (1102)
T Consensus 363 -------------------------------------------------------------------------------- 362 (480)
T KOG0271|consen 363 -------------------------------------------------------------------------------- 362 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC
Q 001311 726 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 805 (1102)
Q Consensus 726 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 805 (1102)
. .+|
T Consensus 363 --------------------------------------------------------------------------m--tgH 366 (480)
T KOG0271|consen 363 --------------------------------------------------------------------------M--TGH 366 (480)
T ss_pred --------------------------------------------------------------------------h--hch
Confidence 1 127
Q ss_pred CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++|||+++.++..
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence 77888999999999999999 99999999999999999999999999999999 99999999999999999999999999
Q ss_pred eeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 885 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 885 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
.|.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999994
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-47 Score=394.78 Aligned_cols=538 Identities=17% Similarity=0.216 Sum_probs=420.3
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
...+|...++-..|||.|-| +|+|...|+|||||....+.+...+|+ --.++|..++|++|+
T Consensus 54 iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds 115 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDS 115 (603)
T ss_pred eeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCC
Confidence 34569999999999999996 999999999999999876665554444 346799999999999
Q ss_pred CeEEEEECC----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311 421 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 496 (1102)
Q Consensus 421 ~~las~~~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h 496 (1102)
++|++.++. |.+.+|| +|..+. ++.||...|+++.|-|.... .++||++|++|.+|+=.--+...++..|
T Consensus 116 ~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 116 KRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred cEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 999987653 3455555 444444 58899999999999998776 8999999999999986556667788899
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
...|+++.| ++||.++++.+.||.|.+||-.+++....+. .|.+.|.+++|+||+
T Consensus 190 skFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-------------------- 247 (603)
T KOG0318|consen 190 SKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-------------------- 247 (603)
T ss_pred ccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC--------------------
Confidence 999999998 4667899999999999999999998888776 566666666666655
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccc
Q 001311 574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 652 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 652 (1102)
..+++++.|.+++|||+.+.+++.++...... .....+-|. ...|++.+.+|+|.+++...+ ...+.+.+|...+
T Consensus 248 -~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 248 -TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSI 323 (603)
T ss_pred -ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheecccccce
Confidence 47999999999999999999999988754331 112234454 668999999999999999998 4889999998765
Q ss_pred cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccccc
Q 001311 653 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 732 (1102)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 732 (1102)
.. ...++++.++++++.||.|.-|+...+....
T Consensus 324 Ta-----------------------------------------Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~------ 356 (603)
T KOG0318|consen 324 TA-----------------------------------------LTVSPDGKTIYSGSYDGHINSWDSGSGTSDR------ 356 (603)
T ss_pred eE-----------------------------------------EEEcCCCCEEEeeccCceEEEEecCCccccc------
Confidence 42 2235678999999999999999998754332
Q ss_pred CCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311 733 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 812 (1102)
Q Consensus 733 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l 812 (1102)
+.+..|...|.+++.+..+. +++++-|.++++.++....+... ..+. ......++
T Consensus 357 ~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~-----------------~~~~-------lg~QP~~l 411 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKS-----------------EVVK-------LGSQPKGL 411 (603)
T ss_pred cccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccc-----------------ceee-------cCCCceeE
Confidence 22245999999999988776 88888888999877632211100 0000 23344589
Q ss_pred EEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee--eeecccc
Q 001311 813 ALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHS 890 (1102)
Q Consensus 813 ~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h~ 890 (1102)
+..+|+.+++.+.++.|.+..-.+ .+.+.. ..-...+++++| ++..+|+|++||.|+||.+..+++. ..+..|.
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 999999888888877776665222 222222 334578999999 9999999999999999999876543 3567799
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcC
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT 969 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~ 969 (1102)
++|+++++|||+.+||++...+.+.+||+.+.+... .... -|. ..|.+++|+|+.+++|++ -|..|.||+++
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~---FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWA---FHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ceee---eee---eeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 999999999999999999999999999999976522 1122 233 379999999999999995 89999999998
Q ss_pred CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311 970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 970 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
.-... .....+|...|+.+.|- |...+++.+.|..|++|++.
T Consensus 561 kP~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 561 KPAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Chhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 75444 23335788889999998 45568888999999999874
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-49 Score=419.77 Aligned_cols=612 Identities=14% Similarity=0.208 Sum_probs=445.6
Q ss_pred CeeEEEEe-cCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311 348 SPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 426 (1102)
Q Consensus 348 ~v~~v~~s-pdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 426 (1102)
.+..+..+ ..|+++.+++ -..|.+||+.+|+..... +...-...|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~va~~a--~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSA--LEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEEEEec--cccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence 33433333 3588533334 378999999999554320 122334689999999999999999
Q ss_pred ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~ 506 (1102)
..||.|+||+..++... .++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 99999999999987543 36899999999999999999 79999999999999999999999999999999987764
Q ss_pred ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311 507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 586 (1102)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 586 (1102)
.+..++++.|.|+.|++||+.+..+..+.-.|...+..+++.+ +.+++++.|+.+
T Consensus 159 --~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~ 213 (888)
T KOG0306|consen 159 --NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSEL 213 (888)
T ss_pred --CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCce
Confidence 3347999999999999999999777776666666666666544 358999999999
Q ss_pred EEEECCCcc------------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccc
Q 001311 587 KFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 654 (1102)
Q Consensus 587 ~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 654 (1102)
++|++.... ...++...+ .+....+...++++++++-+.|..+.++.+.+..+..+.+...-.....
T Consensus 214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kk 292 (888)
T KOG0306|consen 214 KVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKK 292 (888)
T ss_pred EEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhh
Confidence 999983110 111121111 1234456677789999999999999999988764433322210000000
Q ss_pred cCCCCCCCcccchhhhHhhhhccccccccccccccCC-CCCCccccCCC-CccccccCCCccceEecccC-CC-CCcccc
Q 001311 655 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG-MNGDVRSLADV-KPRITEESNDKSKVWKLTEL-SE-PNQCRS 730 (1102)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~-~~-~~~~~~ 730 (1102)
... .. . ...+...+....- .+...+....- -.-+....... ..++. -.++++..+.++.. .. +...+.
T Consensus 293 ka~-t~-e-~~~~v~~sl~~~i----~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~ 364 (888)
T KOG0306|consen 293 KAE-TE-E-NEDDVEKSLSDEI----KRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRT 364 (888)
T ss_pred hcc-cc-c-cccchhhhHHHHH----HHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCcccccc
Confidence 000 00 0 0000000000000 00000000000 00011111111 22333 45577777777652 11 122222
Q ss_pred ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311 731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810 (1102)
Q Consensus 731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~ 810 (1102)
-.+...+|...|.+++|+.+...+++ +.++.+++|+. .+.+.++.. ....+.
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~S-ga~~SikiWn~----------------------~t~kciRTi-----~~~y~l 416 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLAS-GAGESIKIWNR----------------------DTLKCIRTI-----TCGYIL 416 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeee-cCCCcEEEEEc----------------------cCcceeEEe-----ccccEE
Confidence 22333669999999999999875444 44567888875 344433321 234788
Q ss_pred EEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----ceeee
Q 001311 811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKS 884 (1102)
Q Consensus 811 ~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~~~~~ 884 (1102)
+..|-|.++++++|. .|.+.+||+.+...+.+.++|.+.|..++.+| |++.+++|+.|.+|++||+.- +...+
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 899999999999999 89999999999999999999999999999999 999999999999999999853 11111
Q ss_pred eec-------cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 885 KLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 885 ~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
.+. .-.+.|.|+.+||||++||.+=-|.+|+||-+++-+ +.-.+.||.. +|.++.+|||++++++
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkL---PV~smDIS~DSklivT 567 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKL---PVLSMDISPDSKLIVT 567 (888)
T ss_pred eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeeccccc---ceeEEeccCCcCeEEe
Confidence 111 134679999999999999999999999999999843 4556678876 9999999999999999
Q ss_pred E-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcc
Q 001311 958 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1036 (1102)
Q Consensus 958 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 1036 (1102)
+ .|+.|+||-++-|.|.+.+. +|.+.|.++.|-|+..++++++.|+.|+-||-+..+.+..+. +|+.. |
T Consensus 568 gSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~e-v 637 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSE-V 637 (888)
T ss_pred ccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchhe-e
Confidence 5 99999999999999999987 889999999999999999999999999999999999998887 66666 8
Q ss_pred cceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1037 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1037 ~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+ +++-+| +|.+++++|.|.+|++|.-..
T Consensus 638 ~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 638 W--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred e--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 8 777778 689999999999999999765
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-46 Score=401.61 Aligned_cols=547 Identities=15% Similarity=0.232 Sum_probs=423.2
Q ss_pred eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC
Q 001311 350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 429 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 429 (1102)
-.+.|++||..++.. ..+.|-|+|+.+++... ..-.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~sviSP--vGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISP--VGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCEEEec--cCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 457899999874433 34899999998765432 234567899999999999999999999
Q ss_pred CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC--------eeeEEeecCCCCeE
Q 001311 430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--------AKQYIFEGHEAPVY 501 (1102)
Q Consensus 430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~--------~~~~~~~~h~~~v~ 501 (1102)
|...+-++.....+.. + .-..+|.||.|||||+ +++.|. .+.+.||..... ...+++.||-..|.
T Consensus 77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 9998888876543331 2 2457899999999999 455444 568999986532 22457789999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe--eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
++.|+ .|.++|++||.|-++++|+++..+.. ..+.+|...|.... |..+...+++
T Consensus 150 si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvacf---------------------F~~~~~~l~t 206 (893)
T KOG0291|consen 150 SIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACF---------------------FGANSLDLYT 206 (893)
T ss_pred EEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEE---------------------eccCcceEEE
Confidence 99995 45589999999999999999876653 33444444444444 4444456999
Q ss_pred EeCCCeEEEEECCC-----------------------cce-----EE----EEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311 580 AGDDFSIKFWDMDS-----------------------VQL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTND 627 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~-----------------------~~~-----~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 627 (1102)
.+.||.+.+|.... ++. .. ..-.......+++.+|++.-..|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 99999999998761 111 00 00011122467888899988899999999
Q ss_pred CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccc
Q 001311 628 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 707 (1102)
Q Consensus 628 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (1102)
|...+|.+..- .+++.+.
T Consensus 287 G~f~LyelP~f-~lih~LS------------------------------------------------------------- 304 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSLS------------------------------------------------------------- 304 (893)
T ss_pred CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence 98888887554 3333221
Q ss_pred ccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC-ceEEeeeccccccCCCCcccccccce
Q 001311 708 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 786 (1102)
Q Consensus 708 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~ 786 (1102)
....+|..++|+..|.+++.++.. |.+.||+++.+.+
T Consensus 305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY------------- 342 (893)
T KOG0291|consen 305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY------------- 342 (893)
T ss_pred -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------
Confidence 133578899999999999999886 9999999754322
Q ss_pred eccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001311 787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 865 (1102)
Q Consensus 787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las 865 (1102)
.+...+|...+.+++++|||+++|+|+ ||.|+|||..++-|..+|..|++.|+++.|+. .++.+++
T Consensus 343 ------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 343 ------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred ------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 122245999999999999999999999 99999999999999999999999999999999 9999999
Q ss_pred EeCCCcEEEEEeecceeeeeecccc-ccceeEEEecCCCEEEEEcCCC-cEEEEEcCCCcccceeeeecCCCCCCCCCCC
Q 001311 866 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 943 (1102)
Q Consensus 866 g~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 943 (1102)
.+-||+|+.||+...+..+++.... -...|++..|.|..++.|+.|. .|.||++++|+ .+.++.||. ++|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHE---gPV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHE---GPV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCC---Ccc
Confidence 9999999999999999999887543 3356788888899999999886 59999999976 577888887 499
Q ss_pred cEEEEccCCcEEEE-EeCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311 944 TRVQFHQDQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 944 ~~~~~spdg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
.+++|+|+|..|++ +-|++|++||+-.. ..+.++ .+...++.++|+|||+-|++++.||.|.+||+..+..+..+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 48999999998654 233333 34778999999999999999999999999999988887655
Q ss_pred CCCcccCCC----------CCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC--cccccCC
Q 001311 1022 NPSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPP 1076 (1102)
Q Consensus 1022 ~~~~~~~~g----------h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~ 1076 (1102)
....-+..| +......-.+++|++ ||..+++|+..+.|.++++.++- .+|.+..
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence 432222222 122223345899999 79999999999999999999886 4554433
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-50 Score=398.83 Aligned_cols=364 Identities=18% Similarity=0.240 Sum_probs=299.2
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.||.++|.|++|+|+|+.||+|+.|.++++||+.+... .++.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 5889999999999999999999999999999999999764 447899999999999999999 79999999999999
Q ss_pred eCCCCeee-EEeecCCCCeEEEeeee---cCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311 483 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 483 d~~~~~~~-~~~~~h~~~v~~v~~~~---~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
|.++|+++ ..|.+|...|++++|.+ .+...+|++++.||.|+|||+..+.++..+.+|...|+++.|-.+|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g----- 259 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG----- 259 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence 99999876 68999999999999864 4566799999999999999999999999999999999999987665
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++++++.|++|++|+...|.+...+++|.+ .|+.++++-|- .|-+|..|
T Consensus 260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~LRtgaf~----------- 308 (480)
T KOG0271|consen 260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-VLRTGAFD----------- 308 (480)
T ss_pred -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-hhhccccc-----------
Confidence 599999999999999999999999998877 78888876431 11111111
Q ss_pred ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311 639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 718 (1102)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 718 (1102)
+.+ ...+
T Consensus 309 --------------------------~t~--------------------------------------------~~~~--- 315 (480)
T KOG0271|consen 309 --------------------------HTG--------------------------------------------RKPK--- 315 (480)
T ss_pred --------------------------ccc--------------------------------------------ccCC---
Confidence 111 0000
Q ss_pred cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311 719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 798 (1102)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1102)
. ..+++.- .+.+
T Consensus 316 --~---~se~~~~--------------------------------------------------------------Al~r- 327 (480)
T KOG0271|consen 316 --S---FSEEQKK--------------------------------------------------------------ALER- 327 (480)
T ss_pred --C---hHHHHHH--------------------------------------------------------------HHHH-
Confidence 0 0000000 0000
Q ss_pred ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311 799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 876 (1102)
Q Consensus 799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 876 (1102)
+..+.-..+..+++|+ |.++.+|+-.. .+++....+|..-|+.+.||| |++++|+++-|..|++||
T Consensus 328 -----------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 328 -----------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD 395 (480)
T ss_pred -----------HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence 0001112346788888 68899998654 446778899999999999999 999999999999999999
Q ss_pred eecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311 877 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 877 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 956 (1102)
..+|+.+..|+||-+.|..++|+.|.++|++|+.|.+++||++.+.+.
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-------------------------------- 443 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-------------------------------- 443 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------------------
Confidence 999999999999999999999999999999999999999999987331
Q ss_pred EEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 957 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 957 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
.. ...+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 444 -----------------~~--DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 444 -----------------KQ--DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----------------cc--cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 01 1237899999999999999999999999999995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-47 Score=408.02 Aligned_cols=514 Identities=13% Similarity=0.208 Sum_probs=404.8
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 423 (1102)
.....|+|++-+||.- +||+|..||.|+||+..+...+. .+.||...|+++.|+..|.+|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceE
Confidence 3446899999999987 59999999999999999876655 488999999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEE
Q 001311 424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 503 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v 503 (1102)
|+||.|+.|.|||+-....+. .+.||.+.|+..-|..+.+ ++++.|.|+.|++||+.+..|..+...|.+.|+++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998755333 5999999999999998777 89999999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEeCCCeEEEEEcCCCCCe--------------eeecCCCCeeeEEEEccCCcee-------------
Q 001311 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSR--------------VDYEAPGRWCTTMAYSADGTRT------------- 556 (1102)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--------------~~~~~~~~~v~~~~~s~~~~~~------------- 556 (1102)
++.. +.+++++.|+.+++|++...... ..-...+. ...+...++++.+
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~fr 272 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFR 272 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhhee
Confidence 9854 58999999999999998321110 00011111 1112222222200
Q ss_pred ----------------------e--------------------eccccCceeEEEEcCCCC---EEEEEeCCCeEEEEEC
Q 001311 557 ----------------------Y--------------------QGFRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDM 591 (1102)
Q Consensus 557 ----------------------~--------------------~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~ 591 (1102)
. .-.....+..+.+.|.++ .|+. -.++++..|.+
T Consensus 273 I~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl 351 (888)
T KOG0306|consen 273 IRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSL 351 (888)
T ss_pred ecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEe
Confidence 0 000112344566655443 2333 56788888887
Q ss_pred CC-cc------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311 592 DS-VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 664 (1102)
Q Consensus 592 ~~-~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1102)
.. +. .+..+...+|...|.+++++.+...+++|. .+.+++|+..+. ++++++.
T Consensus 352 ~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-kciRTi~------------------ 411 (888)
T KOG0306|consen 352 ENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-KCIRTIT------------------ 411 (888)
T ss_pred ccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-ceeEEec------------------
Confidence 65 21 123344455566899999999988777775 479999998877 5555442
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311 665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 744 (1102)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 744 (1102)
.+.+.+
T Consensus 412 --------------------------------------------------------------------------~~y~l~ 417 (888)
T KOG0306|consen 412 --------------------------------------------------------------------------CGYILA 417 (888)
T ss_pred --------------------------------------------------------------------------cccEEE
Confidence 236778
Q ss_pred EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEE
Q 001311 745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 824 (1102)
Q Consensus 745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~ 824 (1102)
..|-|.+++++.|..+|.+.+||+.. ..++.. .. .|.+.|..++.+||++.+++|
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEe
Confidence 89999999999999999999998732 221111 11 399999999999999999999
Q ss_pred e-CCeEEEEEcCC-----Cceeeeec-------CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311 825 S-GGKISLFNMMT-----FKTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 825 s-dg~I~iwd~~~-----~~~~~~~~-------~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
+ |.+|++||..- +...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+.+-+..-.+.||.-
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 9 99999999741 22212111 1346799999999 999999999999999999999999999999999
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 970 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~ 970 (1102)
+|.||..|||++.++|||.|.+|+||-++-|.. ...+-+|. .+|+++.|-|...++.+ |.|+.|+-||...
T Consensus 552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEecCcceEEeechhh
Confidence 999999999999999999999999999988764 33344454 38999999999888888 6999999999999
Q ss_pred ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311 971 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus 971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
.+.++.+. +|...|++++.+|+|.+++++|.|.+|++|.-....++
T Consensus 624 Fe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 624 FEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred hhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 99999887 89999999999999999999999999999987664443
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-45 Score=391.92 Aligned_cols=624 Identities=15% Similarity=0.184 Sum_probs=418.5
Q ss_pred eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE--
Q 001311 350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-- 427 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-- 427 (1102)
..++-.|....+..-++ ..|.++|+...++-+ ++..|..+++|++||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sgl~aYpAG--CvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYPAG--CVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred CcccccccccceeeccC--cEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 44555665553233233 689999998766554 5778889999999999999999974
Q ss_pred CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCeeeEEeecCCCCeEEEee
Q 001311 428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505 (1102)
Q Consensus 428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~ 505 (1102)
....++||++.....+. +|..|.-.|+|++|+|.++ ++++.|. |-.|.+||++.......-+ -...|.+++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE
Confidence 66789999999876554 5888999999999999999 7777664 4467889887654433222 3456777887
Q ss_pred eecCCccEEEEEeCCCeEEEEEcCCCCCee---eecCCC-----------------Ce---eeEEEEccCCc-------e
Q 001311 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPG-----------------RW---CTTMAYSADGT-------R 555 (1102)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~-----------------~~---v~~~~~s~~~~-------~ 555 (1102)
+.+|.|+++.+. ..|++|.++...+.. .+.+.. .. -.+.+++..|. +
T Consensus 174 --sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRR 250 (1080)
T KOG1408|consen 174 --SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRR 250 (1080)
T ss_pred --ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhh
Confidence 577789999885 899999988655221 011100 00 02233334332 1
Q ss_pred e---eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC----------------------CCCCCcC
Q 001311 556 T---YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------------GGLPASP 610 (1102)
Q Consensus 556 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~~~v~ 610 (1102)
+ +...+...-.|++++. +++++|+.+|.|++|+..+-....++... .......
T Consensus 251 LLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~I 328 (1080)
T KOG1408|consen 251 LLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAI 328 (1080)
T ss_pred hhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCcee
Confidence 1 1122233444555554 68999999999999998876554444311 1122345
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001311 611 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 690 (1102)
Q Consensus 611 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1102)
.+.|++....|.+...|..+++||+++-.+.-+.... .
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~---l--------------------------------------- 366 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM---L--------------------------------------- 366 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeee---e---------------------------------------
Confidence 6789999999999999999999999876332211100 0
Q ss_pred CCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311 691 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 770 (1102)
Q Consensus 691 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 770 (1102)
-..-.+|+++.....- |...- +.-|.+. +++++.|++|++|++..
T Consensus 367 --------------------yHS~ciW~Ve~~p~nv-----------~~~~~---aclp~~c-F~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 367 --------------------YHSACIWDVENLPCNV-----------HSPTA---ACLPRGC-FTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred --------------------eccceeeeeccccccc-----------cCccc---ccCCccc-eeEecCCCcEEEeeccc
Confidence 0122344444321100 00000 0111222 45555555555555433
Q ss_pred cccCCC--Ccccccc--cc--------eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC
Q 001311 771 TERNSS--GKATASV--AP--------QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 837 (1102)
Q Consensus 771 ~~~~~~--~~~~~~~--~~--------~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~ 837 (1102)
...... ...+... ++ .+-|...+..-............+++++++|+|++||+|. .|.++||++...
T Consensus 412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 110000 0000000 00 0000000000000000112466799999999999999999 799999999999
Q ss_pred ceeeeecCCCCCeeEEEEecC--CCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCC--CEEEEEcCCC
Q 001311 838 KTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADS 912 (1102)
Q Consensus 838 ~~~~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg 912 (1102)
+....+..|..+|.|+.|+-. ..++||+++.|.-|.|||+.. ..+++++.+|+..|+++.|.-.| ..++++|.|+
T Consensus 492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence 888899999999999999852 357999999999999999864 56788999999999999999877 7899999999
Q ss_pred cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeecc-CCCCCCeeEEE
Q 001311 913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHAT 990 (1102)
Q Consensus 913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~ 990 (1102)
.|.+-..... ....+.....+......+..++..|..+++++ +.|+.|+||++.+|+.++.|.. ++|.+..-.+.
T Consensus 572 simFr~~qk~---~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 572 SIMFRVNQKA---SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred hhheehhccc---cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence 7765433311 11111112222223357889999999999999 6999999999999999999985 45678888999
Q ss_pred EcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC-
Q 001311 991 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE- 1069 (1102)
Q Consensus 991 ~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~- 1069 (1102)
..|.|-|||+.+.|.++.++|+-+|+++.+.. ||... |. .+.|.+ |-+.|++.+.||+|+||.+....
T Consensus 649 lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred ECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchhHh
Confidence 99999999999999999999999999998877 65444 55 899999 57899999999999999998743
Q ss_pred ----cccccCCCCCCCCCCCCCCCCCCCCCC
Q 001311 1070 ----GKWGVPPPVDNGSTSSMPATPPVGGSG 1096 (1102)
Q Consensus 1070 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1096 (1102)
......+....++.-..|..|.+.+.+
T Consensus 718 i~m~~r~~~lr~rq~~~~~~~pl~p~~p~d~ 748 (1080)
T KOG1408|consen 718 IRMVNRNGRLRVRQLEKFIAVPLEPDNPNDA 748 (1080)
T ss_pred HHHHHHhhHHHHHhccCCcCCCCCCCCCCCC
Confidence 122223334444444455555544443
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=369.09 Aligned_cols=576 Identities=14% Similarity=0.156 Sum_probs=390.6
Q ss_pred CCccccccccCCCCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEe
Q 001311 307 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVL 384 (1102)
Q Consensus 307 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~ 384 (1102)
+|..-..|.|+.+.+. +......|...++||+||++|+| +|+|. ..-.++||++.....+.
T Consensus 54 YpAGCvVVlfn~~~~t---------------Q~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA- 116 (1080)
T KOG1408|consen 54 YPAGCVVVLFNVDSCT---------------QSHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA- 116 (1080)
T ss_pred eccCcEEEEEcccccc---------------hhheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-
Confidence 4455566678888862 11223347889999999999997 99986 44579999998877665
Q ss_pred eeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC--CCeEEEEEccCCceeeeEEEeeccccCEEEEEEc
Q 001311 385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 462 (1102)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s 462 (1102)
.+..|+..|+|++|+|.++|+++.+. |..|.+||+....... -..-...|.+++|+
T Consensus 117 ------------------EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fs 174 (1080)
T KOG1408|consen 117 ------------------EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFS 174 (1080)
T ss_pred ------------------hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEc
Confidence 37899999999999999999998765 5678899987654332 22345689999999
Q ss_pred CCCCeeEEEEecCCCcEEEEeCCCCeeeEE-------------e------------------------ecC---------
Q 001311 463 HPNKQLCVITCGDDKTIKVWDATNGAKQYI-------------F------------------------EGH--------- 496 (1102)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~-------------~------------------------~~h--------- 496 (1102)
.||. |++|.+ ...|++|.++.++.... + .||
T Consensus 175 EdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRL 251 (1080)
T KOG1408|consen 175 EDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRL 251 (1080)
T ss_pred cCCc--eeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhh
Confidence 9999 788887 46899999887652110 0 011
Q ss_pred --------CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC---ce
Q 001311 497 --------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR---SL 565 (1102)
Q Consensus 497 --------~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~---~i 565 (1102)
+...+|+|+ +.++|++|+.+|.|++|+..+..-..++......-..++-..+-..++.+.... ..
T Consensus 252 LDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 252 LDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred hhhhhhhhccccceeee----ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 111223333 236899999999999998877655544432211111111000111222222211 23
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE-cCCCCCCCcCeEEEcC-----------CCCEEEEEECCCcEEEE
Q 001311 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKIL 633 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~-----------~~~~l~~~~~dg~i~iw 633 (1102)
..+.|++....|.+...|..++|||++.-..+... ..--|...|+++..-| -...+++++.|++||+|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 45778989999999999999999999875433211 1111122344443333 12358899999999999
Q ss_pred EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311 634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 713 (1102)
Q Consensus 634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 713 (1102)
++..+ .--..+........ .+.... .++..-+. .|..
T Consensus 408 ~l~~c-tnn~vyrRNils~~--------l~ki~y--------------------------------~d~~~q~~--~d~~ 444 (1080)
T KOG1408|consen 408 DLAFC-TNNQVYRRNILSAN--------LSKIPY--------------------------------EDSTQQIM--HDAS 444 (1080)
T ss_pred ecccc-cccceeecccchhh--------hhcCcc--------------------------------ccCchhhh--hhcc
Confidence 98763 11111110000000 000000 00000000 0000
Q ss_pred cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311 714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 793 (1102)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 793 (1102)
.-++|-.. .. .......+.+++++|+|++|++|..-|.++||++..-..
T Consensus 445 ~~~fdka~-------~s----~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------------------- 493 (1080)
T KOG1408|consen 445 AGIFDKAL-------VS----TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------------------- 493 (1080)
T ss_pred CCcccccc-------hh----hcCcccceEEEEECCCcceecccCccCceEEEEehhhhh--------------------
Confidence 00111000 00 012456799999999999999999999999999743111
Q ss_pred cccccccCCCCCCCCeeEEEEec---CCCeEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCC--cEEEEE
Q 001311 794 IMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIG 866 (1102)
Q Consensus 794 ~~~~~~~~~~~~~~~i~~l~~s~---d~~~las~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~--~~lasg 866 (1102)
......|+..|.|+.|+. ..++||+++ |.-|.|||+. ....+.++.+|...|+++.|.- .| ..++++
T Consensus 494 -----~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~Misc 567 (1080)
T KOG1408|consen 494 -----TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISC 567 (1080)
T ss_pred -----hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEec
Confidence 011123999999999984 347899999 8999999986 4556788999999999999987 44 678888
Q ss_pred eCCCcEEEEEeecceeeeeeccc-----cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCC
Q 001311 867 MDDSSIQIYNVRVDEVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 941 (1102)
Q Consensus 867 ~~dg~v~vwd~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 941 (1102)
+.|..|.+--..+......+..| ...+..|+..|..+++++++.|+.|+||++++++. .+.+.+.....+
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEG 642 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCC
Confidence 89988776443321112222222 24688999999999999999999999999999875 334445555556
Q ss_pred CCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 942 SDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 942 ~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
....+...|.|.|+|+ +.|+++.++|.-+|+++.... ||+..|+.+.|++|.+.|++++.||.|+||.+...
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 7889999999999999 599999999999999998877 99999999999999999999999999999998754
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.6e-38 Score=339.82 Aligned_cols=589 Identities=14% Similarity=0.146 Sum_probs=432.1
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 431 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 431 (1102)
..+..-|+.++++.+.+++..+||.+.-..+.. -..+...|+|++=..+--|.|.| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 667777777899999999999999988777652 35677899999876554444443 34
Q ss_pred EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ee----eEEeecCCCCeEEEeee
Q 001311 432 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH 506 (1102)
Q Consensus 432 v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~----~~~~~~h~~~v~~v~~~ 506 (1102)
|.+|.- |+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ .. +..++...+.|++++ |
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666543 434433 46678777777653 466 5889999999999998874 22 122233333488775 4
Q ss_pred ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311 507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 586 (1102)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 586 (1102)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-= ..++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------DVVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------DVVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------eEEEEeccCceE
Confidence 55444578999999999999999999998888877777766655533 458889999999
Q ss_pred EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE-EEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCccc
Q 001311 587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 665 (1102)
Q Consensus 587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1102)
.++|++.++.+..++... +.|++++|.-||.. +++|+..|.+-+||+............|...
T Consensus 227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s-------------- 290 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS-------------- 290 (910)
T ss_pred EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC--------------
Confidence 999999999999998653 36999999999875 5566667999999998873333333233222
Q ss_pred chhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEE
Q 001311 666 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 745 (1102)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 745 (1102)
.....+.+....+++++.|+.+++|-.+.+....+ .++.. .+|..+..++
T Consensus 291 ---------------------------v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR--~LR~R-~GHs~Pp~~i 340 (910)
T KOG1539|consen 291 ---------------------------VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR--LLRSR-GGHSAPPSCI 340 (910)
T ss_pred ---------------------------cccceecCCCceEeeccCCCceeEEEeeCCCCcch--heeec-cCCCCCchhe
Confidence 12234556677889999999999998775443322 22221 5799999999
Q ss_pred EEc-cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC----CCe
Q 001311 746 IFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSY 820 (1102)
Q Consensus 746 ~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d----~~~ 820 (1102)
.|- .+|..+++++.|++++.+++....++..-... .....+..+.........-.+|..+++... -.-
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~-------~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL-------HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc-------ccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 997 78999999999999999887654432211110 001111100000000002234666666532 123
Q ss_pred EEEEe--CCeEEEEEcCCCce-eeeec-----CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee---ccc
Q 001311 821 VMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KGH 889 (1102)
Q Consensus 821 las~s--dg~I~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l---~~h 889 (1102)
++++. +..++.|+.+.... ...+. .....+++++.++ .|++.+.|+..|.|-+|++.+|-....+ ..|
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 44444 57799999987554 23333 2346799999999 9999999999999999999999888888 589
Q ss_pred cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001311 890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 968 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~ 968 (1102)
.++|++++...-++.+++++.+|.+++||........ ...-+ .++..+..+.....+++ ..|-.|+++|.
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 9999999998888999999999999999998754211 11112 36788888888888888 48889999999
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
.+.+.++.+. +|.+.|++++|||||++|++++.|++||+||+.++.++..+. +. .-++++.|+| +|
T Consensus 564 ~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-ng 629 (910)
T KOG1539|consen 564 VTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-NG 629 (910)
T ss_pred hhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-CC
Confidence 9999999988 899999999999999999999999999999999999998765 22 2245899999 69
Q ss_pred CEEEEEecC-CcEEEEeccCCC
Q 001311 1049 NEFALGLSD-GGVHVFEPLESE 1069 (1102)
Q Consensus 1049 ~~l~s~~~D-g~v~vW~~~~~~ 1069 (1102)
++|+|...| ..|++|-=.+--
T Consensus 630 D~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred CEEEEEEecCceEEEEEchhHh
Confidence 999999999 789999765443
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.5e-41 Score=336.26 Aligned_cols=285 Identities=18% Similarity=0.272 Sum_probs=256.9
Q ss_pred ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 451 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1102)
|-+.+|..+.|+.|++ .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..++||+.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4578999999999999 89999999999999999999999999999999999999875567899999999999999999
Q ss_pred CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcC
Q 001311 531 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 610 (1102)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 610 (1102)
...+..+.+|...|..++|.|+| ++|++++.|.+-++||+.++..+....+|. ..|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG---------------------~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSG---------------------KFLGTASFDSTWRLWDLETKSELLLQEGHS--KGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCC---------------------ceeeecccccchhhcccccchhhHhhcccc--cccc
Confidence 88888888887766666555555 589999999999999999998887777664 4899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001311 611 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 690 (1102)
Q Consensus 611 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1102)
+++|.+||.++++|+.|..-+|||++++ ..+..+.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~-------------------------------------------- 342 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLA-------------------------------------------- 342 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccC-cEEEEec--------------------------------------------
Confidence 9999999999999999999999999988 3222221
Q ss_pred CCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311 691 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 770 (1102)
Q Consensus 691 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 770 (1102)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCC
Q 001311 771 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 849 (1102)
Q Consensus 771 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~ 849 (1102)
+|..+|.+++|+|+|..||+|+ |++++|||++....+.++.+|.+-
T Consensus 343 ---------------------------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 343 ---------------------------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ---------------------------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 1677788888888888899988 899999999998999999999999
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
|+.|.|+|+.|.+|++++.|++++||.-.++.+++.+.||.+.|.++..++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-40 Score=332.99 Aligned_cols=284 Identities=19% Similarity=0.307 Sum_probs=257.9
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC--C
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 420 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 420 (1102)
++.+.+|..+.||+|++. ||||+.+|.++||+..++..+. .+.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~~-laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKH-LATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCCe-EEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 456789999999999995 9999999999999999987766 58999999999999995 7
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
..||+|+.||+|++|++++...+. .+.+|...|..++|.|+|+ +|+|++.|.+-++||++++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876555 5899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.+++|+ +||.+++||+.|..-+|||++++.++..+.+|...|.++.|+|+|. .+++|
T Consensus 307 ~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg 363 (459)
T KOG0272|consen 307 FSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG 363 (459)
T ss_pred ceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence 999985 5668999999999999999999999999999988888888887774 69999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 659 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1102)
+.|++++|||++..+.+.++..|.. -|..|.|+| .|.+|++++.|++++||...+. .+++.+.
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa------------- 427 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA------------- 427 (459)
T ss_pred CCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence 9999999999999999999887755 799999999 8999999999999999987776 5555443
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 739 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 739 (1102)
+|.
T Consensus 428 -----------------------------------------------------------------------------GHe 430 (459)
T KOG0272|consen 428 -----------------------------------------------------------------------------GHE 430 (459)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 488
Q ss_pred cceEEEEEccCCceEEEeecCceEEeee
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
+.|.++.+++|+..+++++.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 8999999999999999999999999995
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.5e-39 Score=306.94 Aligned_cols=290 Identities=19% Similarity=0.296 Sum_probs=258.1
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+-+|...|.++.|++|.++ +++++.||.++|||..|..+.+- +.-....|..++|+|.|+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPSGN 110 (343)
T ss_pred ecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCCCC
Confidence 4569999999999999997 99999999999999998877764 444567999999999999
Q ss_pred eEEEEECCCeEEEEEccCC--c-eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 422 LFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
++|+|+-|....||++.+. + ..+...++.+|.+-+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.||.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcc
Confidence 9999999999999999865 2 2344456899999999999998776 99999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
.|.++.+.++ +++.+++|+.|+..++||++.+.....|.+|...|.++.|.|+|. -|+
T Consensus 188 DV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------afa 245 (343)
T KOG0286|consen 188 DVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AFA 245 (343)
T ss_pred cEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------eee
Confidence 9999998764 678999999999999999999999999999988888887777774 699
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCC
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 658 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1102)
+|++|++.|+||++..+.+..+.......+|++++||..|++|++|..|.++.+||.-.+ +.+..+
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------------- 311 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------------- 311 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------
Confidence 999999999999999999999987777778999999999999999999999999997666 222222
Q ss_pred CCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccc
Q 001311 659 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 738 (1102)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 738 (1102)
.+|
T Consensus 312 -----------------------------------------------------------------------------~GH 314 (343)
T KOG0286|consen 312 -----------------------------------------------------------------------------AGH 314 (343)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 248
Q ss_pred ccceEEEEEccCCceEEEeecCceEEeee
Q 001311 739 ATKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
.++|.++..+|||..+++++-|..++||.
T Consensus 315 eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 89999999999999999999999999994
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.8e-37 Score=326.10 Aligned_cols=587 Identities=15% Similarity=0.177 Sum_probs=401.9
Q ss_pred ceeeccCCCCeeEEEEecCCC---eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 415 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~---~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 415 (1102)
...+-+|...|+|+.|-|+.+ + +++|+.|+.|++|.+.....+... .+.+|...+ ++
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~~--~c 106 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKEC--VC 106 (764)
T ss_pred EEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcceeE--EE
Confidence 333446999999999999887 5 899999999999999844333321 345565544 44
Q ss_pred EccCCCeEEEEECCCeEEEEEccCCceeeeEEEeecc--ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC--eeeE
Q 001311 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQY 491 (1102)
Q Consensus 416 ~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~--~~~~ 491 (1102)
++.......+.+.|+++.+||.+..+ +.....++-- .---.|+++.++.+..+++.|+.+..|.++.-.++ +.+.
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 54444444444789999999995544 1111122211 22235677778666557788888888888875544 3456
Q ss_pred EeecCCCCeEEEeeeecCC-ccEEEEEeCCCeEEEEEcCCCCCeee------ecC-CCCeeeE----EEEccCCceeeec
Q 001311 492 IFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVD------YEA-PGRWCTT----MAYSADGTRTYQG 559 (1102)
Q Consensus 492 ~~~~h~~~v~~v~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~------~~~-~~~~v~~----~~~s~~~~~~~~~ 559 (1102)
.+.||++.|.+++|..... .-+|+|+|.|..||+|.+.-...... ... ....+.. +.+--.-..++.|
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 8899999999999865443 46889999999999998764331110 000 0111111 1111111123445
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EE--EEcC-CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LT--SIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 634 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~--~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 634 (1102)
|.+ -+.++.|+|.+..|++++.|.++.+|...+..- +. .+.. .+......+..|+|++..+++-+..|..++|.
T Consensus 266 HeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 266 HED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred ccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 554 788899999998999999999999998876532 22 2211 12234578899999999999999999999997
Q ss_pred ccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCcc
Q 001311 635 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 714 (1102)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 714 (1102)
..+. .
T Consensus 345 t~d~-~-------------------------------------------------------------------------- 349 (764)
T KOG1063|consen 345 TKDK-T-------------------------------------------------------------------------- 349 (764)
T ss_pred ccCc-c--------------------------------------------------------------------------
Confidence 3222 0
Q ss_pred ceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcc
Q 001311 715 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 794 (1102)
Q Consensus 715 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 794 (1102)
.|.... -..+|...|+.+.|.|.|.+|++.+.|.+-|+|---. +.. -|.
T Consensus 350 -~w~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-------~q~------~wH----- 398 (764)
T KOG1063|consen 350 -FWTQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-------RQQ------EWH----- 398 (764)
T ss_pred -ceeecc------------ccccccccceeeeecCCCCEEEEeccccceeeecccc-------ccc------cee-----
Confidence 011000 0045889999999999999999999999999875320 000 011
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC--------------------------------------
Q 001311 795 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-------------------------------------- 835 (1102)
Q Consensus 795 ~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~-------------------------------------- 835 (1102)
.+ -...-|...++|++|-+....+++|. ...+|+|+..
T Consensus 399 Ei---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 399 EI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF 475 (764)
T ss_pred ee---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence 00 11122888889999887555666666 4667888731
Q ss_pred -----CCc---------------------------------eeeeecCCCCCeeEEEEecCCCcEEEEEeCC-----CcE
Q 001311 836 -----TFK---------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSI 872 (1102)
Q Consensus 836 -----~~~---------------------------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v 872 (1102)
+|. .++.+.||..+|.+++.+| +++++|+++.. ..|
T Consensus 476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVI 554 (764)
T ss_pred ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEE
Confidence 000 0112346778899999999 99999999854 479
Q ss_pred EEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 873 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
++|+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.+|+.......... ......|. .-|.++.|+|++
T Consensus 555 ~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde 630 (764)
T KOG1063|consen 555 RLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDE 630 (764)
T ss_pred EEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCccc
Confidence 99999999888999999999999999999999999999999999998654433322 12233333 468899999999
Q ss_pred cEEEE-EeCCeEEEEEcCCc--eEeeeeccCCCCCCeeEEEEcC-----CCcEEEEEeCCCeEEEEEcC-------Ccee
Q 001311 953 IHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA-------NLKL 1017 (1102)
Q Consensus 953 ~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~sp-----d~~~l~s~s~Dg~I~vwd~~-------~~~~ 1017 (1102)
+++++ +.|+.|.+|..... +.+..+....++..|+.++|.| .+..++.|-+.|.|.+|... .+..
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~ 710 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTF 710 (764)
T ss_pred ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceee
Confidence 99999 59999999999888 6665555556789999999987 23367889999999999965 1111
Q ss_pred EEEeCCCcccCCCCCCCcccceEEEecCCC---------CCEEEEEecCCcEEEEecc
Q 001311 1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQE---------PNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d---------~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
.......... +|.+. |. .+.|.|.. ...|++|++|.+++++++.
T Consensus 711 ~~~~~l~~~~--~~~~a-V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 711 NLDTRLCATI--GPDSA-VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eecccccccc--ChHHh-hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1111111111 22233 55 68888641 2246999999999999874
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-36 Score=316.80 Aligned_cols=461 Identities=17% Similarity=0.257 Sum_probs=347.6
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
..+++.|.+|.|+|...+ +.++-..|.|.|||.++...+.. +.-..-+|++..|-+-.++
T Consensus 10 ~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNW 69 (794)
T ss_pred hccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccce
Confidence 348999999999999998 66667789999999999887764 3334568999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCeE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY 501 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v~ 501 (1102)
+++|+.|..|+||+..+++.++ .+..|.+-|.+++..|... +++|+|+|-+|++||.+.+ .+.++|.||...|.
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred EEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 9999999999999999988665 6899999999999999999 8999999999999999865 67899999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
+++|.|.. .+.++++|.|++|++|.+....+.+++.+|...|.++.+-+.|. ..+|++|+
T Consensus 145 qv~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsga 204 (794)
T KOG0276|consen 145 QVAFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGA 204 (794)
T ss_pred EEEecCCC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecC
Confidence 99998754 47999999999999999999999999999999999999887764 36899999
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 661 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1102)
+|.+|+|||..+..|++++.+|.+ .|..+.|+|.-..+++|+.||+++||+..+- +....+.
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn--------------- 266 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN--------------- 266 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh---------------
Confidence 999999999999999999998755 7999999999999999999999999987554 2211110
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311 662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 741 (1102)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1102)
-...+
T Consensus 267 ---------------------------------------------------------------------------~gleR 271 (794)
T KOG0276|consen 267 ---------------------------------------------------------------------------YGLER 271 (794)
T ss_pred ---------------------------------------------------------------------------cCCce
Confidence 02245
Q ss_pred eEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeE
Q 001311 742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 821 (1102)
Q Consensus 742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l 821 (1102)
+.+++-.+.+..++.|..+|.+.+= + ......+.+++.|+.+
T Consensus 272 vW~I~~~k~~~~i~vG~Deg~i~v~-l-------------------------------------greeP~vsMd~~gKIi 313 (794)
T KOG0276|consen 272 VWCIAAHKGDGKIAVGFDEGSVTVK-L-------------------------------------GREEPAVSMDSNGKII 313 (794)
T ss_pred EEEEeecCCCCeEEEeccCCcEEEE-c-------------------------------------cCCCCceeecCCccEE
Confidence 6666666777777777777776651 1 1122334455566544
Q ss_pred EEEeC--CeEEEE------EcCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc
Q 001311 822 MSASG--GKISLF------NMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 889 (1102)
Q Consensus 822 as~sd--g~I~iw------d~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 889 (1102)
-+... -.+.+- ++..++.+ +.+-.-.-....++-+| +|+++++|+ ||.-.||..-..+ ..+
T Consensus 314 wa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~ 386 (794)
T KOG0276|consen 314 WAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKA 386 (794)
T ss_pred EEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcc
Confidence 44331 112222 22223221 11111111235678889 898888765 8888888743221 123
Q ss_pred cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001311 890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 969 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~ 969 (1102)
.+.-....|++|....++--.++.|+++ +..+..+.. . .-....+--.|.+|.+..++.+++||..
T Consensus 387 fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi--~----------~~~~~e~i~gg~Llg~~ss~~~~fydW~ 452 (794)
T KOG0276|consen 387 FGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSI--R----------PDMSAEGIFGGPLLGVRSSDFLCFYDWE 452 (794)
T ss_pred cccceeEEEcCCCCeEEEEecCCceEEE--ecceecccc--c----------cccceeeecCCceEEEEeCCeEEEEEcc
Confidence 4556678899998888888778889988 443321110 0 0011222234667777789999999999
Q ss_pred CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC
Q 001311 970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005 (1102)
Q Consensus 970 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg 1005 (1102)
+++.++.+.. ....+.|+.+|.+++.++.|.
T Consensus 453 ~~~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 453 SGELVRRIEV-----TSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred cceEEEEEee-----ccceeEEecCCCEEEEEecCc
Confidence 9999998753 456789999999998888664
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=321.62 Aligned_cols=545 Identities=14% Similarity=0.197 Sum_probs=407.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
+.+.|+|++-+.+--| +|.| ..|.+|-- |+.+.. +...|...|.-+. +=|.+++
T Consensus 75 lp~~I~alas~~~~vy-~A~g---~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYVY-VASG---NKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceEE-EecC---cEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence 7789999987666432 3322 56777763 433332 4667777777665 3489999
Q ss_pred EEECCCeEEEEEccCC-ceeeeEEEe-eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 425 VAYSRHIVQIYSYHGG-DEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~-~~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
++..++.+.||+..++ +......++ ....+.|+++.- |.----.++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 221111122 222233777653 4421114888999999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+.- ++--+.++.|..+|+|.+++++..+.+..+....+.|++++|..||. ..+++++.
T Consensus 208 ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------------------p~las~~~ 265 (910)
T KOG1539|consen 208 IEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------------------PLLASGRS 265 (910)
T ss_pred ecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------------------eeEEeccC
Confidence 874 44446899999999999999999999999988888899999998887 45788888
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC---ccceeecccccccccccCCCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSENS 659 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~ 659 (1102)
.|.+.+||++..+.+..+.. .+...+....|.|....+++.+.|+.+++|-..++ .+.++.-.||..+..
T Consensus 266 ~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~------ 338 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS------ 338 (910)
T ss_pred CceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch------
Confidence 99999999998888777652 22447889999999999999999999998865543 234555566665533
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCC-----
Q 001311 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP----- 734 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~----- 734 (1102)
.+..++ ..+..+.+++.|++.+.+++........+-.+...
T Consensus 339 --~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 339 --CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred --heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 222222 35677889999999998887654332222210000
Q ss_pred ------CcccccceEEEEEccC-----CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311 735 ------ENLRATKISRLIFTNS-----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 803 (1102)
Q Consensus 735 ------~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 803 (1102)
..-.-.+|..+++... .+.+.+.-.+..++.|++.... .|+.....-...
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-------------------~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-------------------SGRHVLDPKRFK 445 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-------------------cccEEecCcccc
Confidence 0112345666666542 2333333345778888864321 111110000000
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
.....+++++.++.|++.+.|. .|.|.+|++++|-....+ ..|.++|+.++... -++.+++++.+|.+.+||+.+
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC
Confidence 1346789999999999999998 899999999999888888 58999999999988 788999999999999999998
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 958 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~ 958 (1102)
..++..+.- ...++++..+.....++.+..|-.|+++|+.+.+ ....+.||.. .|++++|||||++|++ +
T Consensus 525 k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 525 KVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITDMTFSPDGRWLISAS 595 (910)
T ss_pred cceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceeeeEeCCCCcEEEEee
Confidence 887777763 4567888888888999999999999999998844 4556667764 9999999999999999 5
Q ss_pred eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-CeEEEEE
Q 001311 959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFS 1011 (1102)
Q Consensus 959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-g~I~vwd 1011 (1102)
.|++|++||+.++.++..+.. ..+++++.|||+|.+||++..| .-|++|-
T Consensus 596 mD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 899999999999999988754 6799999999999999999999 5699996
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=291.13 Aligned_cols=256 Identities=21% Similarity=0.300 Sum_probs=217.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+-+|++.|+.++..+.+..++++++.|.+|.+|++.......- ...+.+.||...|..++.++||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEccCCc
Confidence 3459999999999999888999999999999999876422211 11125889999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC--CCC
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAP 499 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h--~~~ 499 (1102)
+.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .++||+.|++|++|++. |.+..++..+ .+.
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred eEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCCcCc
Confidence 99999999999999999997555 4889999999999999999 59999999999999965 4555555433 789
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|.+++|+|..+..+|++++.|++|++||+++-+....+.+|.+.++.++++|||. ..++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lcas 209 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCAS 209 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEec
Confidence 9999999988778999999999999999999888888888887777777777765 6888
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 643 (1102)
|+.||.+.+||++.++.+..+... ..|.+++|+|+..+|+.+.. ..|+|||+.++ ..+.
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~ 268 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVE 268 (315)
T ss_pred CCCCceEEEEEccCCceeEeccCC---CeEeeEEecCCceeEeeccC-CceEEEeccch-hhhh
Confidence 999999999999999998888643 36999999999888887765 46999999887 4443
No 23
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.2e-35 Score=303.20 Aligned_cols=533 Identities=19% Similarity=0.230 Sum_probs=384.9
Q ss_pred CCCccccCCccccccccCCCCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCC--------eE
Q 001311 300 GISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DI 371 (1102)
Q Consensus 300 ~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~--------~i 371 (1102)
--+.|+.+++++..|.|+...+ ..+..++|+..|.|++.+||.-. +++|...| .|
T Consensus 74 lptgE~vyfvA~V~Vl~n~ee~----------------~Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phv 136 (626)
T KOG2106|consen 74 LPTGELVYFVAAVGVLYNWEER----------------SQRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHV 136 (626)
T ss_pred ccCccEEEEeccEEEEEeehhh----------------hcccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCee
Confidence 3456676888888888877664 24557889999999999999874 88887666 49
Q ss_pred EEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCCeEEEE--ECCCeEEEEEccCCceeeeEE
Q 001311 372 GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHL 447 (1102)
Q Consensus 372 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~--~~d~~v~vwd~~~~~~~~~~~ 447 (1102)
+|||..+-..++ ++..-...|.|++||+ .|.+|+.. +.+..+.|||+..+......
T Consensus 137 riWdsv~L~TL~-------------------V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v- 196 (626)
T KOG2106|consen 137 RIWDSVTLSTLH-------------------VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV- 196 (626)
T ss_pred eecccccceeee-------------------eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-
Confidence 999988777766 3555667899999999 45566654 45677999999987765543
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE---eecC-CCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKI 523 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~---~~~h-~~~v~~v~~~~~~~~~~l~s~s~dg~i 523 (1102)
..-++.|..+.|.|.+.. ++++++ .+.+.+|+++.+...+. +.++ ...|.|++|.+ +| -+++|..+|.|
T Consensus 197 --k~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e--ng-dviTgDS~G~i 269 (626)
T KOG2106|consen 197 --KTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE--NG-DVITGDSGGNI 269 (626)
T ss_pred --eeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcC--CC-CEEeecCCceE
Confidence 335678999999999986 566666 57999999998876543 4433 25688888854 43 48999999999
Q ss_pred EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC
Q 001311 524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 603 (1102)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 603 (1102)
.+|+..+.........|.+.|.+++...+|. |++|+.|..|..|| ..-+.+...+..
T Consensus 270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt----------------------llSGgKDRki~~Wd-~~y~k~r~~elP 326 (626)
T KOG2106|consen 270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGT----------------------LLSGGKDRKIILWD-DNYRKLRETELP 326 (626)
T ss_pred EEEeCCCceEEeEeeecCCceEEEEEecCcc----------------------EeecCccceEEecc-ccccccccccCc
Confidence 9999977665555558888888888888886 88899999999999 555555555555
Q ss_pred CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311 604 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 683 (1102)
Q Consensus 604 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1102)
...+.++.++=...+ |++|+..+.|..=.+.++..+..
T Consensus 327 e~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v---------------------------------------- 364 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTV---------------------------------------- 364 (626)
T ss_pred hhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEE----------------------------------------
Confidence 555667666544333 77777665554433333311100
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311 684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 763 (1102)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 763 (1102)
.+|.+....++..|+...+++++.|+.+
T Consensus 365 ----------------------------------------------------~gh~delwgla~hps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 365 ----------------------------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHV 392 (626)
T ss_pred ----------------------------------------------------EecccceeeEEcCCChhheeeccCcceE
Confidence 3366778889999999999999999999
Q ss_pred EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee
Q 001311 764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 842 (1102)
Q Consensus 764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~ 842 (1102)
++|+-.. -+|... -..++.|+.|.|.| .+|.|. .|...+.|.++...+..
T Consensus 393 ~lW~~~k---------------~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 393 RLWNDHK---------------LEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred EEccCCc---------------eeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence 9997210 122211 35678899999999 888888 89999999998555444
Q ss_pred ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 843 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 843 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
-. ...++++++|+| +|.+||+|+.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+.+.|-.|..|...
T Consensus 444 ~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 444 HT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred Ee-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 33 478899999999 9999999999999999998753 222222 3344899999999999999999999999999332
Q ss_pred CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311 921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
..+. . .++..+.|....-. .-.......|...|..++-+.+.+++|+
T Consensus 522 ~~~~-~--------------ts~kDvkW~t~~c~------------------lGF~v~g~s~~t~i~a~~rs~~~~~lA~ 568 (626)
T KOG2106|consen 522 ECKQ-I--------------TSVKDVKWATYTCT------------------LGFEVFGGSDGTDINAVARSHCEKLLAS 568 (626)
T ss_pred cCcc-c--------------ceecceeeeeeEEE------------------EEEEEecccCCchHHHhhhhhhhhhhhc
Confidence 2111 0 01223333211110 0001111356778888999999999999
Q ss_pred EeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1001 CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1001 ~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
|.+.|+|++|...--+....+. .-.+|.+. +. .++|...| ..+++.+.|.+|..|++
T Consensus 569 gdd~g~v~lf~yPc~s~rA~~h----e~~ghs~~-vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 569 GDDFGKVHLFSYPCSSPRAPSH----EYGGHSSH-VT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCceEEEEccccCCCcccce----eeccccce-eE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 9999999999987655543322 22244444 44 89999866 45555559999999997
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-36 Score=304.42 Aligned_cols=349 Identities=19% Similarity=0.335 Sum_probs=280.0
Q ss_pred CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC--CeeEEeeeeeeeccCCCCccccccc-cC----CC
Q 001311 335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAAL-VK----DP 407 (1102)
Q Consensus 335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~h 407 (1102)
++....+.+.|..+|.+.+|+|-..-++++|+.|-+.++|++.. ....... .+...+ .. .-
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~------------~lrh~~~~~~~s~~~ 234 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL------------VLRHCIREGGKSVPS 234 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh------------hhhhhhhhhcccCCc
Confidence 56667778889999999999998876799999999999999864 1111100 000000 11 12
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 487 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~ 487 (1102)
...|++++|+.+|..||+|+.||.++||+...+... +|..|.++|.++.|+.+|. +|++++.|+++.+||..+|
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~----tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS----TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh----hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCc
Confidence 357999999999999999999999999999875432 4888999999999999999 8999999999999999999
Q ss_pred eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311 488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567 (1102)
Q Consensus 488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 567 (1102)
...+.+.-|..+-..+.|-. . .
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~-~--~------------------------------------------------------- 330 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQS-N--D------------------------------------------------------- 330 (524)
T ss_pred eEEEeeeeccCCccceEEec-C--c-------------------------------------------------------
Confidence 99888887877644454421 1 1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
.|++.+.|+.|+++.+....++.++.+|. ..|.++.|.|.|.+|++++.|++++||+.... .....+
T Consensus 331 --------~F~ts~td~~i~V~kv~~~~P~~t~~GH~--g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l-- 397 (524)
T KOG0273|consen 331 --------EFATSSTDGCIHVCKVGEDRPVKTFIGHH--GEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL-- 397 (524)
T ss_pred --------eEeecCCCceEEEEEecCCCcceeeeccc--CceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh--
Confidence 25666666777777777777888888754 48999999999999999999999999987655 222222
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 727 (1102)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 727 (1102)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311 728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 807 (1102)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 807 (1102)
.+|...|..+.|+|.|.. .|++
T Consensus 398 --------~~Hskei~t~~wsp~g~v---------------------------------~~n~----------------- 419 (524)
T KOG0273|consen 398 --------QAHSKEIYTIKWSPTGPV---------------------------------TSNP----------------- 419 (524)
T ss_pred --------hhhccceeeEeecCCCCc---------------------------------cCCC-----------------
Confidence 237778888889888751 0000
Q ss_pred CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311 808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 886 (1102)
.++..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +++++|+|+.||.|.+|+.+++++++..
T Consensus 420 --------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 420 --------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred --------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEee
Confidence 1344566666 99999999999999999999999999999999 9999999999999999999999999988
Q ss_pred ccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
.+ .+.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 491 ~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 QG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 75 4559999999999999999999999999874
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-37 Score=334.88 Aligned_cols=275 Identities=18% Similarity=0.277 Sum_probs=228.9
Q ss_pred CCCCccceeecc-CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe---eeeeee---------ccCCCCccc
Q 001311 333 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVW---------DLGACSMPL 399 (1102)
Q Consensus 333 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~---~~~~~~---------~~~~~~~~~ 399 (1102)
..++..+..++. -...++|..||+|++ ++|.|-.|..|++|.+...+.... ..+.-. ++.......
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 344455555555 457899999999999 699999999999999985331110 000000 111112223
Q ss_pred cccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311 400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 400 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 479 (1102)
....+.||.++|..++|+|+.++|++++.|++|++|.+.+..++. .+.||..+|+++.|+|-|- +++|+|.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCcee
Confidence 334588999999999999999999999999999999999987665 4779999999999999998 89999999999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
++|......+++.+.||.+.|.|+.|+|+. .|+++||.|.+||+||+.++..+..+.+|.+.|.+++|+|+|
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G------ 589 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG------ 589 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC------
Confidence 999999999999999999999999997554 799999999999999999988887777777666666666655
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.+|++|++||.|.+||+.+++.+..+.+| .+.|.++.|+.||..|++|+.|.+|++||+...
T Consensus 590 ---------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 590 ---------------RYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---------------ceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 58999999999999999999999999877 558999999999999999999999999998654
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=313.63 Aligned_cols=491 Identities=17% Similarity=0.260 Sum_probs=347.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
.+..|..++|+|...+ +.++-..|.|++||..-+..+.. +..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 5678999999999997 77888889999999998888763 889999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~ 504 (1102)
+|+.|..|+||+.++.+++- ++.||-+-|..+.|.+.-. .++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999977654 6999999999999999888 899999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC-CCeeeEEE-----E-ccCC--ceeeeccccCceeEEEEcCCCC
Q 001311 505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMA-----Y-SADG--TRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~-----~-s~~~--~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
|++.. ..++|+|.|.+||+||+...+....-.+. ........ | .+|. +.++.||. ..+..++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence 98876 58999999999999999764433222110 00000000 0 0011 14455554 4788899999999
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 655 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 655 (1102)
.+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999976654333334455668999999999999999999999999998765 34443321
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311 656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 735 (1102)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 735 (1102)
T Consensus 291 -------------------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 291 -------------------------------------------------------------------------------- 290 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
..++...++..|..+ |++++.|+-+.+|.++. +.++.++
T Consensus 291 --endRFW~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erpa~~v--- 329 (1202)
T KOG0292|consen 291 --ENDRFWILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERPAYAV--- 329 (1202)
T ss_pred --cCCeEEEEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCceEEE---
Confidence 335667788889998 45555665666776521 2233333
Q ss_pred cCCCeEEEEeCCeEEEEEcCCCce--eeeecCC---CCCeeEEEEecCCCcEEEEEeC-CCcEEEEEeecceeee-eec-
Q 001311 816 KNDSYVMSASGGKISLFNMMTFKT--MATFMPP---PPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS-KLK- 887 (1102)
Q Consensus 816 ~d~~~las~sdg~I~iwd~~~~~~--~~~~~~~---~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~-~l~- 887 (1102)
+++.|...-|..|+.+|+.+.+. +..++.. ..++.++.|+|..+..|++... +|.--++.+.+..... ..+
T Consensus 330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 33445555588999999987443 3334433 3578899999954555554433 3444455554321100 000
Q ss_pred c-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001311 888 G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 966 (1102)
Q Consensus 888 ~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iw 966 (1102)
. ......+ .|-..+++.+---.+..+.+-++..... +.+... ..+..+-+..+|.+|.. ....|.+|
T Consensus 409 ~~k~tG~~a-~fvarNrfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lf 476 (1202)
T KOG0292|consen 409 VKKGTGEGA-LFVARNRFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLF 476 (1202)
T ss_pred hhcCCCCce-EEEEecceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEEEE
Confidence 0 1111222 3333334444333366677777765221 111111 13455666667766554 45679999
Q ss_pred EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 967 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 967 d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
|+...+.+..+. ...|..+.||+|..+++.-+ -.+|.|.+
T Consensus 477 dvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 477 DVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred EeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 999999888877 57899999999988766554 34555555
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=284.56 Aligned_cols=287 Identities=16% Similarity=0.282 Sum_probs=241.2
Q ss_pred eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 524 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~ 524 (1102)
...+|+||.+.|.++.|++|.+ .+++++.||.+.|||.-+....+.+.-....|..++|+ |.|+++++|+.|+..-
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s--PSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS--PSGNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC--CCCCeEEecCcCceeE
Confidence 3457999999999999999999 79999999999999999999999888888999998885 5558999999999999
Q ss_pred EEEcCCCC------CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q 001311 525 AWLYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT 598 (1102)
Q Consensus 525 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 598 (1102)
||++.+.. ....+.+|.+.+.++.|..|+. |++++.|.+..+||+++++.+.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEE
Confidence 99998652 2234666777777776666554 9999999999999999999999
Q ss_pred EEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001311 599 SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 677 (1102)
Q Consensus 599 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1102)
.+.+|. ..|.+++++| +++.+++|+-|+..++||++.+ ...+.|.+
T Consensus 181 ~f~GH~--gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g------------------------------ 227 (343)
T KOG0286|consen 181 VFHGHT--GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG------------------------------ 227 (343)
T ss_pred EecCCc--ccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc------------------------------
Confidence 998664 4899999999 9999999999999999999888 45444432
Q ss_pred ccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEe
Q 001311 678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 757 (1102)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 757 (1102)
T Consensus 228 -------------------------------------------------------------------------------- 227 (343)
T KOG0286|consen 228 -------------------------------------------------------------------------------- 227 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC
Q 001311 758 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 836 (1102)
Q Consensus 758 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~ 836 (1102)
|...|.+++|.|+|.-+++|+ |++.++||++.
T Consensus 228 -----------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 228 -----------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred -----------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 444555555566666666666 56666666666
Q ss_pred CceeeeecC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcE
Q 001311 837 FKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 914 (1102)
Q Consensus 837 ~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i 914 (1102)
.+.+..+.. ...+|++++||. .|++|..|..|..+.|||.-+++.+..|.+|.++|++|..+|||.-|+||+.|.++
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 666555542 245799999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q 001311 915 CVWS 918 (1102)
Q Consensus 915 ~vwd 918 (1102)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 28
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-34 Score=308.72 Aligned_cols=545 Identities=17% Similarity=0.242 Sum_probs=384.2
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC---eEEEEEC
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYS 428 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 428 (1102)
..|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3455655 355544 4899999987663333 5899999999999999888 8999999
Q ss_pred CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCe--eeEEeecCCCCeEEEee
Q 001311 429 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCP 505 (1102)
Q Consensus 429 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~--~~~~~~~h~~~v~~v~~ 505 (1102)
|+.|++|.++.. .+.....+.+|...+.|+. .... +.++ ..|+++.+||.+..+ +...+.-..+.+..+|+
T Consensus 78 D~~v~lW~l~~~-~~~~i~~~~g~~~~~~cv~--a~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 78 DGRVILWKLRDE-YLIKIYTIQGHCKECVCVV--ARSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCcEEEEEEeeh-heEEEEeecCcceeEEEEE--eeee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999943 3455667888776666554 2222 3333 789999999985555 33344333334444443
Q ss_pred --eecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 506 --HHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 506 --~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
.+.++.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +.-+|++++
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S 213 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS 213 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence 33333335566677777877755433 33457788999999999876654 223688899
Q ss_pred CCCeEEEEECCCcc---------------------eEEEEc--------CCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 582 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
.|..||||.+.-+. ....+. ..+|...|.++.|+|.+..|++++.|.++.+
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 99999999874322 000111 1245668999999999999999999999999
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
|...+..-.-..
T Consensus 294 W~pd~~tGiWv~-------------------------------------------------------------------- 305 (764)
T KOG1063|consen 294 WKPDENTGIWVD-------------------------------------------------------------------- 305 (764)
T ss_pred EecCCccceEEE--------------------------------------------------------------------
Confidence 975433100000
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 792 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 792 (1102)
.+|+=.+ .+.........|+|+++.+++-+..|..++|.... ...|...
T Consensus 306 ~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~- 354 (764)
T KOG1063|consen 306 VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE- 354 (764)
T ss_pred EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec-
Confidence 0000000 01234567788999999999999999999997211 1123321
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311 793 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGM 867 (1102)
Q Consensus 793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 867 (1102)
....||...|+.++|+|.|++|.+.+ |-+-|+|-.-. ...+..-+-|...++|++|-+ ....+++|.
T Consensus 355 -------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgA 426 (764)
T KOG1063|consen 355 -------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGA 426 (764)
T ss_pred -------cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecc
Confidence 11245999999999999999999999 99999987542 223344566888899999998 677888999
Q ss_pred CCCcEEEEEeec-------------------------------------------ce-----------------------
Q 001311 868 DDSSIQIYNVRV-------------------------------------------DE----------------------- 881 (1102)
Q Consensus 868 ~dg~v~vwd~~~-------------------------------------------~~----------------------- 881 (1102)
+...+|+|+... |.
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 999999997420 00
Q ss_pred ----------eeeeeccccccceeEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEE
Q 001311 882 ----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 946 (1102)
Q Consensus 882 ----------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 946 (1102)
.++++.||.-.|++++.+|+++++||++... .|++|+..+... .+.+.+|.. .|+.+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~l 578 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTRL 578 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEEE
Confidence 1123457889999999999999999998754 489999887543 334556664 89999
Q ss_pred EEccCCcEEEE-EeCCeEEEEEcCCceEeeeec---cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc--eeEEE
Q 001311 947 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCR 1020 (1102)
Q Consensus 947 ~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~--~~~~~ 1020 (1102)
+|||||++|++ +.|+++.+|........ .+. ...|..-|.++.|+||+.++||+|.|.+|+||....+ +.+.+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 99999999999 69999999988543221 111 4589999999999999999999999999999999888 44444
Q ss_pred eCCCcccCCCCCCCcccceEEEecCCCCC----EEEEEecCCcEEEEecc
Q 001311 1021 INPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1021 ~~~~~~~~~gh~~~~v~~~~v~f~p~d~~----~l~s~~~Dg~v~vW~~~ 1066 (1102)
+. .++. +..|. .+++.|-+.. .++.|-..|.|.+|+..
T Consensus 658 ~a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FA---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hc---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 32 1111 22255 6666655443 78999999999999976
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-34 Score=300.93 Aligned_cols=466 Identities=18% Similarity=0.225 Sum_probs=346.5
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
+..|...|.++.|+|...+++++-.+|.|.|||.++...++. +.-..-+|.+..|-+--. .+++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 455889999999999999999999999999999999887764 556778999999998777 899999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
..+++.++.|..|.+.|.+++.||.. .+++|+|+|-+|++||++.. .+..++.+|.+.|.+++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999998765 69999999999999999876 46678999999999999998766
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCCcc
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
+.+++++-|++|++|.+.+..+..++++|.. .|+|+.|-+ |..+|++|++|.+|++||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHek--GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHEK--GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeecccc--CcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 6799999999999999999999999987654 899999987 5579999999999999999887 7
Q ss_pred ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311 641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 720 (1102)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 720 (1102)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 7777655
Q ss_pred cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311 721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 800 (1102)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 800 (1102)
|...|..+.|.|.-..+++|+.||+++||+-.+- ++.. .+
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----------------------~lE~-tL 265 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----------------------KLEK-TL 265 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcce----------------------ehhh-hh
Confidence 5667888999999999999999999999975221 1000 01
Q ss_pred CCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE-----
Q 001311 801 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY----- 875 (1102)
Q Consensus 801 ~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw----- 875 (1102)
. ..-..+.|++..+.+..+++|.|....+..+-.......+ ++ .|+++-+.. +.|.--
T Consensus 266 n--~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM------------d~-~gKIiwa~~--~ei~~~~~ks~ 328 (794)
T KOG0276|consen 266 N--YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM------------DS-NGKIIWAVH--SEIQAVNLKSV 328 (794)
T ss_pred h--cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee------------cC-CccEEEEcC--ceeeeeeceec
Confidence 0 1456799999999999999999765555555443333332 22 233332221 111111
Q ss_pred ----Eeecceeee----eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311 876 ----NVRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 876 ----d~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 947 (1102)
++..|+.+. .+-.-.-.-..++-+|+|++++.++ ||.-.||..-..+ ...- +.-....
T Consensus 329 ~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-------nK~f------G~~~eFv 394 (794)
T KOG0276|consen 329 GAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-------NKAF------GSGLEFV 394 (794)
T ss_pred cCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh-------hccc------ccceeEE
Confidence 233333221 1111111123467889998887765 7888888643211 1111 2457899
Q ss_pred EccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcc
Q 001311 948 FHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026 (1102)
Q Consensus 948 ~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1026 (1102)
|++|....++ -+++.|.++ ++.+..+.+....+ +..--.|.+|.. ..++.+++||.++++++.+++
T Consensus 395 w~~dsne~avRes~~~vki~--knfke~ksi~~~~~------~e~i~gg~Llg~-~ss~~~~fydW~~~~lVrrI~---- 461 (794)
T KOG0276|consen 395 WAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS------AEGIFGGPLLGV-RSSDFLCFYDWESGELVRRIE---- 461 (794)
T ss_pred EcCCCCeEEEEecCCceEEE--ecceeccccccccc------eeeecCCceEEE-EeCCeEEEEEcccceEEEEEe----
Confidence 9999777777 478899998 77777777664332 111113444544 457789999999999999998
Q ss_pred cCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1027 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1027 ~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+.+-.+.|+- +|.+++.++ |.+.++..++.
T Consensus 462 ---------v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n~ 491 (794)
T KOG0276|consen 462 ---------VTSKHVYWSD-NGELVAIAG-DDSFYILKFNA 491 (794)
T ss_pred ---------eccceeEEec-CCCEEEEEe-cCceeEEEecH
Confidence 4455788885 566666665 44556666543
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=290.94 Aligned_cols=339 Identities=17% Similarity=0.251 Sum_probs=281.8
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+..|++.|.+++.+|+.+++|||+.|....||++.+|+... .+.+|.+.|+++.|+.||. +|+||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 488999999999999999999999999999999999998544 5889999999999999999 89999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
+..++.....+......|.=++|++. +..|+.|+.||.+.+|.+.+......+.+|...+++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 99999999988766667777889864 47999999999999999998877777788877777777766665
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
+++++..||+|++||+.+++++..+....+ ....++.++..+..++.|..++.+++-+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 699999999999999999999999875543 45788999999999999999999998877666 222
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
....+....
T Consensus 269 ~~~n~~~~~----------------------------------------------------------------------- 277 (399)
T KOG0296|consen 269 NCNNGTVPE----------------------------------------------------------------------- 277 (399)
T ss_pred EecCCCCcc-----------------------------------------------------------------------
Confidence 211110000
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
+. ..+..
T Consensus 278 -----l~------~~~e~-------------------------------------------------------------- 284 (399)
T KOG0296|consen 278 -----LK------PSQEE-------------------------------------------------------------- 284 (399)
T ss_pred -----cc------ccchh--------------------------------------------------------------
Confidence 00 00000
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 881 (1102)
....|..+.++..-.+.|+|+ ||+|.|||+...+..+.+ .|...|+.+.|-+ ..+|++++.||.|+.||.++|+
T Consensus 285 --~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 285 --LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred --hhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 122344455556666788898 999999999886654444 4888899999987 5789999999999999999999
Q ss_pred eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 882 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
++....||...|.+++++|+.++++|+|.|++.+||++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999864
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=282.60 Aligned_cols=295 Identities=15% Similarity=0.228 Sum_probs=248.7
Q ss_pred cccccceEEEEEccC-CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311 736 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 814 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~ 814 (1102)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |.+.|..+.. +.+ |+..|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 469999999999887 456788889999999998543 2233433332 334 9999999999
Q ss_pred ecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc--cc
Q 001311 815 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SK 891 (1102)
Q Consensus 815 s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~ 891 (1102)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+... .+..++..+ ++
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE 149 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcC
Confidence 99999999999 99999999999999999999999999999999 999999999999999999875 444454433 78
Q ss_pred cceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEc
Q 001311 892 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFET 968 (1102)
Q Consensus 892 ~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~ 968 (1102)
-|.|+.|+|+ ..+|++++.|++|++||+.+.+ ....+.||. +.++.+.+||||..++++ .||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 9999999998 7899999999999999999854 344555665 489999999999999994 9999999999
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
+.++.+..+ +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+....+ ......+..++++|++ ||
T Consensus 222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999997776 568999999999997666655 46669999999999998887544444 2234457788999999 79
Q ss_pred CEEEEEecCCcEEEEecc
Q 001311 1049 NEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1049 ~~l~s~~~Dg~v~vW~~~ 1066 (1102)
..|++|-.|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999875
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=274.26 Aligned_cols=231 Identities=20% Similarity=0.294 Sum_probs=192.2
Q ss_pred eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccC
Q 001311 360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 439 (1102)
Q Consensus 360 ~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~ 439 (1102)
-||++++.|.+|++|...+|.+... +....+.|+.+.+.||+++||+++. ..|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence 4899999999999999999999874 5556778999999999999999876 5699999999
Q ss_pred CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC
Q 001311 440 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 519 (1102)
Q Consensus 440 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~ 519 (1102)
+..- +..++.+|.+.|+++.|-.||+ .++|||+||+++|||++...+.+.++ |..+|++++.++.. ..|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8754 5668999999999999999999 89999999999999999988877776 78999999986544 67999999
Q ss_pred CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc----
Q 001311 520 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---- 595 (1102)
Q Consensus 520 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 595 (1102)
+|.|++||+.+..+...+... .+..+.++.+.|+|.+++++...|..++|++-.+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe--------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPE--------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CCcEEEEEccCCccccccCCC--------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 999999999876544333221 11256666777777789999999999999997654
Q ss_pred --eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 596 --LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 596 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++..++.|. ..+..+.+|||+++|++++.|.+++||+..+.
T Consensus 205 l~P~~k~~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 205 LEPVHKFQAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceEhhheeccc--ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 334455453 46889999999999999999999999986543
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-35 Score=292.36 Aligned_cols=273 Identities=17% Similarity=0.280 Sum_probs=238.5
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
...+.+|...|+.+-|+|+-. ++++++.|++|++||..+++... .+.||.+.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 344667999999999999988 69999999999999999998865 5899999999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
.|++||+++.|-.+++||.++. ..+.+.+.+|+..|.+++|-|-|. ++++++.|.+|+.|++.+|.++++|.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999873 233346889999999999999998 899999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
.|..+.. ..||.++++++.|.+|++|-+.++.+...+..|...|.+++|.|....--.....+. ...+.++.
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~ 308 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG 308 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence 9998885 678899999999999999999999999999999999999999887641100000000 01346889
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.+. ++++.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 999999999999999999999998865 8999999999999999999999999999888 5655554
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=267.73 Aligned_cols=295 Identities=15% Similarity=0.274 Sum_probs=240.4
Q ss_pred eEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeee
Q 001311 468 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCT 545 (1102)
Q Consensus 468 ~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~ 545 (1102)
.+|+|+|.|.+||+|...+|.|.++++...+.|+.+.+ .+++..|++++. ..||+||+++... +..+.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLei--Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEI--TPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEE--cCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 48999999999999999999999999988889999997 455577777775 7899999998654 456666666555
Q ss_pred EEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE
Q 001311 546 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 625 (1102)
Q Consensus 546 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 625 (1102)
++.|..+| +++++|++||+++|||++...+.+.++.. ..|+++..+|+...|++|.
T Consensus 88 aVgF~~dg---------------------rWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 88 AVGFQCDG---------------------RWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred EEEEeecC---------------------eEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec
Confidence 55555554 58999999999999999997766666543 4799999999999999999
Q ss_pred CCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcc
Q 001311 626 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 705 (1102)
Q Consensus 626 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 705 (1102)
.+|.|++||+.+. .+...+
T Consensus 144 qsg~irvWDl~~~-~c~~~l------------------------------------------------------------ 162 (311)
T KOG0315|consen 144 QSGNIRVWDLGEN-SCTHEL------------------------------------------------------------ 162 (311)
T ss_pred CCCcEEEEEccCC-cccccc------------------------------------------------------------
Confidence 9999999998766 111111
Q ss_pred ccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccc
Q 001311 706 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 785 (1102)
Q Consensus 706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 785 (1102)
+|+ ....|.++.+.|||++++++.+.|..++|++......
T Consensus 163 ---------------------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------- 202 (311)
T KOG0315|consen 163 ---------------------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------- 202 (311)
T ss_pred ---------------------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------
Confidence 111 3367899999999999999999999999998542221
Q ss_pred eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC-ceeeeecCCCCCeeEEEEecCCCcEE
Q 001311 786 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNII 863 (1102)
Q Consensus 786 ~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~l 863 (1102)
+.......++ .|+..+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+..++||. |+.||
T Consensus 203 ------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Yl 273 (311)
T KOG0315|consen 203 ------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYL 273 (311)
T ss_pred ------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEE
Confidence 1111111122 2889999999999999999998 999999999988 55677899999999999999 99999
Q ss_pred EEEeCCCcEEEEEeecceeeeeeccccccceeEEEe
Q 001311 864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 899 (1102)
Q Consensus 864 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 899 (1102)
++|+.|+.+++|++..++.++...+|.....|++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999888887764
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=279.29 Aligned_cols=331 Identities=15% Similarity=0.191 Sum_probs=264.1
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
.....|++.|.+++.+|+.+ +++||+.|..-.||+..+++... .+.+|++.|+|+.||.|
T Consensus 58 ~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshd 117 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHD 117 (399)
T ss_pred eehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccC
Confidence 33556999999999999777 69999999999999999998766 48999999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
|.+||||+.+|.|+||+..++..... +.+--+.|.-+.|.|-+. +|+.|+.||.+.+|.+.++...+.+.||..+
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~~---~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQWK---LDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEEE---eecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence 99999999999999999999986654 445567788899999888 8999999999999999999889999999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
+++=.|. ++|+.++++..||+|++|+..++.....+.... .....++.++..+..++.
T Consensus 193 ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--------------------~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 193 CTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--------------------GLELPCISLNLAGSTLTK 250 (399)
T ss_pred ccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccc--------------------cCcCCccccccccceeEe
Confidence 9988884 558999999999999999999987776554321 124445555555667888
Q ss_pred EeCCCeEEEEECCCcceEEEEcCC------CCCCCcCeE---EEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDAD------GGLPASPRI---RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 650 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~---~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 650 (1102)
|+.++.+++-+..+|+.+....+. .....+.|+ .++..-.+.|+|+-||+|.|||.... ..
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~--------- 320 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TL--------- 320 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hh---------
Confidence 889999999988888877766521 011122223 33334445556666666666664322 00
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311 651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 730 (1102)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 730 (1102)
T Consensus 321 -------------------------------------------------------------------------------- 320 (399)
T KOG0296|consen 321 -------------------------------------------------------------------------------- 320 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311 731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810 (1102)
Q Consensus 731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~ 810 (1102)
.. . ..|...|.
T Consensus 321 -----------------------------------------------------------------R~--~--c~he~~V~ 331 (399)
T KOG0296|consen 321 -----------------------------------------------------------------RH--I--CEHEDGVT 331 (399)
T ss_pred -----------------------------------------------------------------he--e--ccCCCceE
Confidence 00 0 01677788
Q ss_pred EEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 811 ~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
.+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 888887 56777777 99999999999999999999999999999999 99999999999999999864
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-34 Score=276.46 Aligned_cols=294 Identities=21% Similarity=0.345 Sum_probs=242.7
Q ss_pred cccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311 400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 400 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 479 (1102)
....+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .++++|.|++|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence 334688999999999999999999999999999999976643 23446889999999999999999 79999999999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
+.||+++|++++.+++|...|++++.. .-+-.++.+++.|+++++||++..+.+.++... .
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-y----------------- 175 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-Y----------------- 175 (338)
T ss_pred EEEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccccc-e-----------------
Confidence 999999999999999999999998732 334467889999999999999987776654322 2
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
.++++.|..++..+.+|+-|+.|++||++.+.....+.+|.. .|+.+..+++|.++.+-+.|.++++||++.-.
T Consensus 176 ----qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 176 ----QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ----eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccC
Confidence 344455555556799999999999999999999999987755 89999999999999999999999999975320
Q ss_pred ---cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311 640 ---RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 716 (1102)
Q Consensus 640 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 716 (1102)
+++..++++.
T Consensus 250 p~~R~v~if~g~~------------------------------------------------------------------- 262 (338)
T KOG0265|consen 250 PSQRCVKIFQGHI------------------------------------------------------------------- 262 (338)
T ss_pred CCCceEEEeecch-------------------------------------------------------------------
Confidence 0111111000
Q ss_pred EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311 717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 796 (1102)
Q Consensus 717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1102)
|
T Consensus 263 ---------------------h---------------------------------------------------------- 263 (338)
T KOG0265|consen 263 ---------------------H---------------------------------------------------------- 263 (338)
T ss_pred ---------------------h----------------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
+.......++|+|+++.+..|+ |..+++||..+...+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=
T Consensus 264 -------nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 264 -------NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred -------hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEee
Confidence 0122244578999999999998 99999999999999999999999999999999 89999999999999874
Q ss_pred E
Q 001311 876 N 876 (1102)
Q Consensus 876 d 876 (1102)
+
T Consensus 336 e 336 (338)
T KOG0265|consen 336 E 336 (338)
T ss_pred c
Confidence 3
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-35 Score=287.61 Aligned_cols=301 Identities=22% Similarity=0.327 Sum_probs=266.2
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
-+.+|..+|+.+-|.|+-..+|+++.|++|++||..+|+..+ .++||.+.|..|+|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 367899999999999999999999999999999999999754 6999999999999999999 89999999999999
Q ss_pred eCCC-CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 483 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
|..+ -++++.+.+|...|.+++|.+.+ .+|++++.|.+|+.|+++++-++.++.+|..+|..+....||.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt------- 248 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT------- 248 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence 9887 67888999999999999997664 7999999999999999999999999999998888888877775
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 641 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 641 (1102)
.+++++.|.+|++|-..++++...+..|.+ .|.+++|.|...+ .. | .
T Consensus 249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~-----i--~-------- 295 (406)
T KOG0295|consen 249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PS-----I--S-------- 295 (406)
T ss_pred --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cc-----h--h--------
Confidence 688999999999999999988888887766 6778888775320 00 0 0
Q ss_pred eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311 642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 721 (1102)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 721 (1102)
T Consensus 296 -------------------------------------------------------------------------------- 295 (406)
T KOG0295|consen 296 -------------------------------------------------------------------------------- 295 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311 722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 801 (1102)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 801 (1102)
-+++
T Consensus 296 --------------------------------~at~-------------------------------------------- 299 (406)
T KOG0295|consen 296 --------------------------------EATG-------------------------------------------- 299 (406)
T ss_pred --------------------------------hccC--------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
... .++++.+++ |++|++||+.++.++.++.+|.+.|..++|+| +|+||+++.+|++++|||++++
T Consensus 300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 000 345788888 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999963
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-33 Score=286.00 Aligned_cols=256 Identities=19% Similarity=0.310 Sum_probs=225.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
.+..|++++|+.+|. +||+|+.||.++||+... ..+. .+..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-~l~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-NLIS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCc-hhhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 347899999999999 599999999999999764 4433 5889999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~ 504 (1102)
+++.|+++.+||..+|..... +.-|+.+-..|.|-.+.. +++++.|+.|+|+.+....++.++.||.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q~---f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQQ---FEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEEe---eeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 999999999999999876543 556888878899988776 89999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC-CCCEEEEEeCC
Q 001311 505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDD 583 (1102)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 583 (1102)
|. +.|.+|+++|.|+++++|..........+..|...|..+.|+|.|. +..+| .+..+++++.|
T Consensus 367 ~n--~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 367 WN--PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD 431 (524)
T ss_pred EC--CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence 84 5568999999999999999998899999999999999999999986 22333 34568889999
Q ss_pred CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311 584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645 (1102)
Q Consensus 584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 645 (1102)
++|++||+..+.++..+..|. .+|.+++|+|+|+++++|+.||.|.+|++.++ +.++..
T Consensus 432 stV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred CeEEEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccch-heeEee
Confidence 999999999999999997664 48999999999999999999999999999888 444433
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=277.47 Aligned_cols=245 Identities=18% Similarity=0.297 Sum_probs=216.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+.+|.+.|.||++.|-.++ +++|+.|++|.|||+.+|+... .+.||...|..+++|+--.
T Consensus 147 i~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~vavS~rHp 206 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGVAVSKRHP 206 (460)
T ss_pred hhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEE-------------------eecchhheeeeeeecccCc
Confidence 5569999999999999886 9999999999999999998877 4899999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
||++++.|+.|+-||++..+.++ .+.||-..|.|++..|.-. +|+||+.|.+++|||+++...+.++.||..+|.
T Consensus 207 YlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred eEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence 99999999999999999998777 4789999999999999988 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
.+.+.+.. ..+++||.|++|++||+..++....+..|...|.+++ .+|....|++++
T Consensus 282 ~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~---------------------lhP~e~~fASas 338 (460)
T KOG0285|consen 282 SVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC---------------------LHPKENLFASAS 338 (460)
T ss_pred eEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEe---------------------cCCchhhhhccC
Confidence 99875433 5799999999999999999888777776666555555 455555788888
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.| .|+.|++..|..+..+.++.. -+++++...|+ ++++|+++|.+.+||.+++
T Consensus 339 ~d-nik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-cceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 77 599999999999988776644 68888888776 6788999999999999988
No 40
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-30 Score=276.35 Aligned_cols=505 Identities=13% Similarity=0.161 Sum_probs=351.8
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
..+|+++|||.+.+.||.+-.||.|.||++..+=.... .+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 45899999999999999999999999999998644333 45555 45799999996665 89999999999999999
Q ss_pred CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+...... .-....+.+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r-------------------~l~rq~sRvL 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKR-------------------SLMRQKSRVL 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEe-------------------ecccccceEE
Confidence 99999999999999999986554 68999999997777766543332211 1111234666
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-----CCC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
+++|++++..+++|+.||.|++||..++..+.... ... ...-|.++.|-.+ ..|++|.+.|+|.+||...+ .
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-c
Confidence 77777777889999999999999999998776322 111 2223556666644 46888989999999998776 3
Q ss_pred ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311 641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 720 (1102)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 720 (1102)
+++.+.
T Consensus 237 LiqS~~-------------------------------------------------------------------------- 242 (691)
T KOG2048|consen 237 LIQSHS-------------------------------------------------------------------------- 242 (691)
T ss_pred hhhhhh--------------------------------------------------------------------------
Confidence 333221
Q ss_pred cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311 721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 800 (1102)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 800 (1102)
.|...|.+++.++++.+++++|.|+.+..|...+.... |-...
T Consensus 243 ----------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~~-------- 285 (691)
T KOG2048|consen 243 ----------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVINS-------- 285 (691)
T ss_pred ----------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeeec--------
Confidence 26788999999999999999999999888775432110 21111
Q ss_pred CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee-EEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
....|...+.+++..++ .+++|+ |.++.+-...............-.-. -+...| .++|..--.+..+.+|.+.
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceecc
Confidence 11238889999999888 777777 88887766544221111110000111 122233 3444444556678888876
Q ss_pred cce---------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311 879 VDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949 (1102)
Q Consensus 879 ~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 949 (1102)
+.. +.+........|.+.+.||||++++.+.-- .++||.+................. ......+.|+
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~---~~~a~~i~ft 437 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLA---LLDASAISFT 437 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhh---hccceeeEEE
Confidence 641 112122233458999999999999987643 478888876432222222111111 1256788999
Q ss_pred cCCcEEEE-E-eCCeEEEEEcCCceEe--eeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc
Q 001311 950 QDQIHFLV-V-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus 950 pdg~~l~~-~-~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
-|+..++. + ....+.+++..+.... ..+...+-...|..+..|+||+|||+.+.+|.|.+|++++++.......
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r-- 515 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR-- 515 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc--
Confidence 88888777 4 6678888887765433 3333333467899999999999999999999999999999887654320
Q ss_pred ccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+. ...+.++|+|.+-+.|+.+..|+.|+-+|++..+
T Consensus 516 -ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 516 -LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred -cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 2344888998778889999999999999995554
No 41
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=273.61 Aligned_cols=436 Identities=18% Similarity=0.249 Sum_probs=324.1
Q ss_pred CCccceeecc-CCCCeeEEEEecC--CCeEEEEE-ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311 335 LPKTVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 410 (1102)
Q Consensus 335 ~~~~~~~~~~-h~~~v~~v~~spd--g~~llasg-~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1102)
..-...+.++ -...|+||+||+- |.+|++.- +.+..+-|||+..+..... .+..+..
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~ 202 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEV 202 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccce
Confidence 3444455555 5789999999983 55444442 3455789999987766542 3445678
Q ss_pred eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccc-cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 489 (1102)
Q Consensus 411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~ 489 (1102)
|....|.|.+.-|+.....+.+..|+++++...+....+.+++ .-|.|++|.++|. ++||..+|.|.||+..+.+.
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceE
Confidence 8999999966666666667889999999998887776676654 4799999999998 89999999999999988887
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee--cCCCCeeeEEEEc-----------------
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYS----------------- 550 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s----------------- 550 (1102)
.+....|.+.|.+++.. .+| .|++|+.|+.|..|| ..-+.+... +...+.+..++-.
T Consensus 280 ~k~~~aH~ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred EeEeeecCCceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 77777999999999974 444 577799999999999 332333222 2222333333211
Q ss_pred --cCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311 551 --ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 628 (1102)
Q Consensus 551 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 628 (1102)
..-+.+..+|.+ ..+.++.+|+.+.+++++.|+.+++|+ ..+++.+..... ++.|+.|+|.| .+++|+..|
T Consensus 356 ~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 356 LENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred ecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccc
Confidence 111133344444 788899999999999999999999999 555555554332 47889999999 999999999
Q ss_pred cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccc
Q 001311 629 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 708 (1102)
Q Consensus 629 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 708 (1102)
...+.|.++. ..+....
T Consensus 429 ~w~V~d~e~~-~lv~~~~-------------------------------------------------------------- 445 (626)
T KOG2106|consen 429 RWFVLDTETQ-DLVTIHT-------------------------------------------------------------- 445 (626)
T ss_pred eEEEEecccc-eeEEEEe--------------------------------------------------------------
Confidence 9999998764 2222110
Q ss_pred cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceec
Q 001311 709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 788 (1102)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 788 (1102)
...++..+.|+|+|.+++.++.|+.|++|.++..
T Consensus 446 -----------------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~----------------- 479 (626)
T KOG2106|consen 446 -----------------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN----------------- 479 (626)
T ss_pred -----------------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-----------------
Confidence 2467899999999999999999999999988532
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee--------------e----cCCCCC
Q 001311 789 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--------------F----MPPPPA 849 (1102)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~--------------~----~~~~~~ 849 (1102)
|....+.-.. +..+|+.+.||+|++++.+-+ |-.|..|.......... | -.+...
T Consensus 480 ----g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 480 ----GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred ----CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 2222111111 458899999999999999998 88999995433222111 1 124456
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEeecce---eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
|.+++-+. +.+++|+|.+.|.|++|...--+ ...+..+|++-|++++|..+...|++.+.|..|..|++
T Consensus 554 i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 554 INAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 77777777 88999999999999999875432 34567889999999999999889998889999999986
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.9e-33 Score=266.92 Aligned_cols=254 Identities=18% Similarity=0.230 Sum_probs=214.1
Q ss_pred cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
....+.+|++.|..+.|+|+|.+ +|||+.|..|.+|++.....-. ..+++|.+.|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence 34456789999999999999995 9999999999999975332211 1478999999999999
Q ss_pred cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
+|+..|++++.|.+|+.||.++|++++ .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999877 47889999999997666776 78999999999999999999998886 45
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
-.+++++|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++| .++
T Consensus 175 yqltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g---------------------s~l 231 (338)
T KOG0265|consen 175 YQLTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG---------------------SFL 231 (338)
T ss_pred eeEEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC---------------------Ccc
Confidence 678888885 444689999999999999999988888888887777777766666 478
Q ss_pred EEEeCCCeEEEEECCC----cceEEEEcCCCCCCC--cCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 578 LAAGDDFSIKFWDMDS----VQLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++-+.|.++++||++. .+++..+.++.+... ...++|+|++..+.+|+.|..+++||....
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 9999999999999874 345777776655433 346889999999999999999999997654
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8e-34 Score=309.94 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=233.8
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
....+.|..|++|++.++.+..|..|++|.+...+. .. ++ +.. +
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl----------------------~~--lk---~~~---------~ 420 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL----------------------KK--LK---DAS---------D 420 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhh----------------------cc--cc---chh---------h
Confidence 346789999999999999999999999998732111 00 00 000 0
Q ss_pred CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeE
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 896 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1102)
...+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 11111222 33366677777777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEee
Q 001311 897 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 975 (1102)
Q Consensus 897 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~ 975 (1102)
.|+|-|-|+||++.|++.++|..+.. .++.++.||.. .|.++.|+|++.|++++ .|.+|++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccC-----Cchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 99999999999999999999998874 35777888875 89999999999999995 89999999999999999
Q ss_pred eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311 976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
.|. ||.++|.+++|||+|++|++|+.||.|.|||+.+++++..+. +|++. +. ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~t-i~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGT-IY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCc-ee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999998887 66333 77 899999 799999999
Q ss_pred cCCcEEEEeccCCC
Q 001311 1056 SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1056 ~Dg~v~vW~~~~~~ 1069 (1102)
.|++|++||+....
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997655
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-29 Score=269.21 Aligned_cols=547 Identities=14% Similarity=0.156 Sum_probs=378.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC-CCCeEEEEEccCCCeE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l 423 (1102)
....|+|+|||.+.+. ||.+-.||.|.||++..+=... .++.++ ...|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 3467999999999885 9999999999999998753322 134444 4689999999 67788
Q ss_pred EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE--EeecCCCCeE
Q 001311 424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY 501 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~--~~~~h~~~v~ 501 (1102)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.++ .++.|+.||.+...+...++... .|...++.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 899999999999999987654 4666788999999999999 68999999988888888887764 4455678899
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC--------CCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
++.|+ +++..|++|+.||.|++||...+........ ....|.++.+..++
T Consensus 159 slsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-------------------- 216 (691)
T KOG2048|consen 159 SLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-------------------- 216 (691)
T ss_pred EEEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--------------------
Confidence 99884 5557899999999999999988766541111 11233444444333
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccc
Q 001311 574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 653 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 653 (1102)
.+++|..-|+|.+||...+.+++.+..+.. .|.+++..+++.++++++.|+.|.-+...+....
T Consensus 217 --tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------ 280 (691)
T KOG2048|consen 217 --TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------ 280 (691)
T ss_pred --cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence 499999999999999999999999887755 7999999999999999999999988876554221
Q ss_pred ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311 654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 733 (1102)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 733 (1102)
|-...
T Consensus 281 ---------------------------------------------------------------wv~~~------------ 285 (691)
T KOG2048|consen 281 ---------------------------------------------------------------WVINS------------ 285 (691)
T ss_pred ---------------------------------------------------------------eeeec------------
Confidence 10000
Q ss_pred CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee-EE
Q 001311 734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CF 812 (1102)
Q Consensus 734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~-~l 812 (1102)
+...|...|.+++..++ .+++++.|..+.+-....... .+ ..+. ...+-. -+
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~~--------~~~p~~~~v 338 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQK--------NLFPASDRV 338 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhcc--------cccccccee
Confidence 00237788888988887 689999998887754321000 00 0000 000111 13
Q ss_pred EEecCCCeEEEEeCCeEEEEEcCCCce---------eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 813 ALSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 813 ~~s~d~~~las~sdg~I~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
...+..++++.-.+..+.+|.+.+... .+........|.+.+.|| +|++|+.+.- ..++||.+...-.+
T Consensus 339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~v 416 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNV 416 (691)
T ss_pred ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcce
Confidence 334555555555578888998866521 122223345699999999 9999998863 46888887652211
Q ss_pred -----eeeccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 884 -----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 884 -----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
.......-.+..+.|+-|+..++.++ .+..+.+.++++........++.. .....|..++.|++|+|+|+
T Consensus 417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEE
Confidence 11222334567889999998888887 677888888877543222111111 23358999999999999999
Q ss_pred -EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCC--cccCCCCCC
Q 001311 958 -VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPS--AYLPAGVSS 1033 (1102)
Q Consensus 958 -~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~--~~~~~gh~~ 1033 (1102)
+..+.|.+|++++++...... .-...|+.++|+| +...|+.+..|+.|+=||++..++ .++... ..+|.....
T Consensus 493 ~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~~ 569 (691)
T KOG2048|consen 493 ISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPKT 569 (691)
T ss_pred EeccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChhh
Confidence 589999999999988755542 1247899999995 566789999999999999954432 211100 001110000
Q ss_pred CcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1034 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1034 ~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
-.-....+.|+|.+...++. -+.+.+.+.|..
T Consensus 570 l~~~~~gisfd~~n~s~~~~-~~a~w~~~id~~ 601 (691)
T KOG2048|consen 570 LIPGIPGISFDPKNSSRFIV-YDAHWSCLIDFS 601 (691)
T ss_pred cCCCCceEEeCCCCccEEEE-EcCcEEEEEecC
Confidence 00112378888865544443 445666666653
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-31 Score=286.46 Aligned_cols=449 Identities=16% Similarity=0.266 Sum_probs=310.1
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
+..-...|..++|+|...++.++-..|.|++||..-+.++. .|.+|.++|..++|.|+.. +++|||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34456789999999999999999999999999999887766 4889999999999999999 899999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 563 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 563 (1102)
..+.+|+.++.||.+.|..+.|+..- .+|+|+|+|.+|++|++.+..++..+.+|.+.|.+..|.|..
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE---------- 147 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE---------- 147 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc----------
Confidence 99999999999999999999998655 699999999999999999999999999998877777766644
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce---------------------------EEEEcCCCCCCCcCeEEEcC
Q 001311 564 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 564 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~~~~s~ 616 (1102)
..++++|-|.+||+||+..-+. +..+-..+|...|+-++|+|
T Consensus 148 -----------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 148 -----------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred -----------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 4799999999999999853211 11111223344677777777
Q ss_pred CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCc
Q 001311 617 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 696 (1102)
Q Consensus 617 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1102)
.-..+++|++|..|++|.....
T Consensus 217 TlpliVSG~DDRqVKlWrmnet---------------------------------------------------------- 238 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET---------------------------------------------------------- 238 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence 7777777777777777765332
Q ss_pred cccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCC
Q 001311 697 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 776 (1102)
Q Consensus 697 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 776 (1102)
+.|.+.+ | .+|.+.|.++.|.|....+++.+.|+.|+|||+...
T Consensus 239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR----- 282 (1202)
T KOG0292|consen 239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR----- 282 (1202)
T ss_pred ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEecccc-----
Confidence 2233332 1 459999999999999999999999999999998432
Q ss_pred CcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEe
Q 001311 777 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 856 (1102)
Q Consensus 777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s 856 (1102)
++... +.. .....+.++..|..+++|+|.|+.+.||-++.-. ++. +.+
T Consensus 283 ---------------t~v~t---frr--endRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~--~v~ 330 (1202)
T KOG0292|consen 283 ---------------TSVQT---FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAY--AVN 330 (1202)
T ss_pred ---------------cceee---eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceE--EEc
Confidence 11100 001 4567889999999999999999888888776322 222 333
Q ss_pred cCCCcEEEEEeCCCcEEEEEeeccee--eeeeccc---cccceeEEEecCCCEE-EEEcCC-CcEEEEEcCCCcccceee
Q 001311 857 PQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRF 929 (1102)
Q Consensus 857 p~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-g~i~vwd~~~~~~~~~~~ 929 (1102)
++.++.+ .|..|+-+|+.+.+- +..++.. ..++.+|.++|-...+ ++...| +.--++.+..........
T Consensus 331 --~n~LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GNGLFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CCEEEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 3334433 389999999988543 3344432 3678889999875544 443333 333344443311100000
Q ss_pred eecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311 930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus 930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
.....+ +=....|-..+++.+.. .+..+.+-++.+... +.+.. ...+..+-+..+|.+|+. ....|.
T Consensus 407 ~~~~k~------tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~--~~~~v~ 474 (1202)
T KOG0292|consen 407 KDVKKG------TGEGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLR--SPDSVT 474 (1202)
T ss_pred hhhhcC------CCCceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEE--cCCeEE
Confidence 000000 00122222222222222 233444444433221 11111 123445556666766553 356799
Q ss_pred EEEcCCceeEEEeC
Q 001311 1009 VFSAANLKLRCRIN 1022 (1102)
Q Consensus 1009 vwd~~~~~~~~~~~ 1022 (1102)
+||++.++.+..+.
T Consensus 475 lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEeecceEEEEEe
Confidence 99999999888776
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=255.84 Aligned_cols=246 Identities=20% Similarity=0.343 Sum_probs=197.6
Q ss_pred eeccCCCCeeEEEEecC-CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 341 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spd-g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
.+-+|.+.|+.++|+|- |. +||+++.|+.|+||+...+..... ...+-.+|+..|+.++|+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 34569999999999998 77 799999999999999985322211 11145689999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---eeeEEeecC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 496 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~---~~~~~~~~h 496 (1102)
|++||+|+.|.++.||.-..++ +....++.||...|.|++|+++|. +|+|++.|++|.||.+..+ +++..+++|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877654 556778999999999999999999 8999999999999998854 567889999
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC---CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
+..|..+.|+|.. .+|+++|.|.+|++|+-... .+..++.++.. .+.+++|++.
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~---------------------TVW~~~F~~~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN---------------------TVWSLAFDNI 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc---------------------eEEEEEecCC
Confidence 9999999999877 59999999999999976631 12333444433 5566666666
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
|..|++++.|++|+||-+.+. +. ..+...+..++|. ...|++++.|+.|+++...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 678999999999999986522 11 1223357778887 5579999999999999644
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=283.34 Aligned_cols=283 Identities=20% Similarity=0.324 Sum_probs=241.5
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
+-.|..|.|.|+|+. |++|+..|.+.+|+..+- +| +.++..|..+|+++.||++|.++++
T Consensus 96 kc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCEEEE
Confidence 458999999999998 999999999999996321 11 1257899999999999999999999
Q ss_pred EECCCeEEEEEccCCceeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~ 504 (1102)
|+.+|.|++|+..-... + .+.+| ...|++++|+|.+. .++|++.||+|+|||....+.-..+.||.-.|.++.
T Consensus 156 gD~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred cCCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 99999999999865432 2 24444 48999999999888 799999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311 505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 584 (1102)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 584 (1102)
|++.. .+|++||.|..|++||.+++.++.++..|...|..+.|.+++ ++|+++|.|.
T Consensus 230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---------------------N~Llt~skD~ 286 (464)
T KOG0284|consen 230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---------------------NWLLTGSKDQ 286 (464)
T ss_pred cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---------------------CeeEEccCCc
Confidence 98766 589999999999999999999999888888777776666655 6899999999
Q ss_pred eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCc
Q 001311 585 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 663 (1102)
Q Consensus 585 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1102)
.++++|+++.+.+.++.+|.. .+++++|+| ...+|.+|+.||.|..|.+... +.+..
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~------------------- 344 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE------------------- 344 (464)
T ss_pred eEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccc-ccccC-------------------
Confidence 999999998888988887754 799999999 7788999999999999987522 11100
Q ss_pred ccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceE
Q 001311 664 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 743 (1102)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 743 (1102)
...+|...|.
T Consensus 345 ----------------------------------------------------------------------i~~AHd~~iw 354 (464)
T KOG0284|consen 345 ----------------------------------------------------------------------IPPAHDGEIW 354 (464)
T ss_pred ----------------------------------------------------------------------CCccccccee
Confidence 1134889999
Q ss_pred EEEEccCCceEEEeecCceEEeeecc
Q 001311 744 RLIFTNSGNAILALASNAIHLLWKWQ 769 (1102)
Q Consensus 744 ~~~~s~~g~~l~~~~~dg~i~iw~~~ 769 (1102)
++++.|-|..|++++.|.++++|.-.
T Consensus 355 sl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 355 SLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccceeEeecCCCcceeeeccC
Confidence 99999999999999999999999753
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.7e-32 Score=256.31 Aligned_cols=293 Identities=16% Similarity=0.209 Sum_probs=238.3
Q ss_pred cccccceEEEEEccC-CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311 736 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 814 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~ 814 (1102)
.+|.+++..++|+|- |..|++++.|+.|++|+.... .+ .........+|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s--~~ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DS--WTCKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------Cc--EEEEEeccccchheeeeeee
Confidence 458889999999998 899999999999999987320 00 11111222359999999999
Q ss_pred ecCCCeEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeeeecc
Q 001311 815 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG 888 (1102)
Q Consensus 815 s~d~~~las~s-dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~ 888 (1102)
+|.|++||+++ |.++.||.-. +.+++.++.||.++|.+++|++ +|++||+++.|.+|-||.+.. .++...|+.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4578899999999999999999 999999999999999999974 367889999
Q ss_pred ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEE
Q 001311 889 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFE 967 (1102)
Q Consensus 889 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd 967 (1102)
|...|..+.|+|...+|++++.|.+|++|+-.. .....+.+.+.+|.. .|.+++|++.|..|+++ .|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 224667788888874 89999999999998885 889999998
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
.-+. + ...|++.++.+.|. ...|++++.|+.|++|.-..+-.--.++........|.. .|+ ++.|.|..
T Consensus 224 ~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN--SVQWNPKV 292 (312)
T ss_pred eccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc-ccc--eEEEcCCC
Confidence 6522 1 23678999999998 557999999999999987643211122211112223333 577 99999966
Q ss_pred CCEEEEEecCCcEEEEecc
Q 001311 1048 PNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
+++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=269.87 Aligned_cols=294 Identities=16% Similarity=0.315 Sum_probs=244.8
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
++.+|.+.|.|+++.|-.+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 689999999999999999999999999999999999998544 6899999999999999888 89999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
|++..+.++.+.||-..|.++..+|.- +.|++|+.|.++|+||+++...+..+.+|...|.++.+.+-.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--------- 289 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--------- 289 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC---------
Confidence 999999999999999999999987765 589999999999999999999999999888887777665533
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
..+++|+.|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 290 ------------pqvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 290 ------------PQVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred ------------CceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 3599999999999999999999999887654 79999999999999998876 6788988766 222
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
..+
T Consensus 354 ~nl----------------------------------------------------------------------------- 356 (460)
T KOG0285|consen 354 QNL----------------------------------------------------------------------------- 356 (460)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 222
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
.+|...|.+++...||- +++++++|.+.+||...+..-..++... ..|.
T Consensus 357 -------------sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS-------- 405 (460)
T KOG0285|consen 357 -------------SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS-------- 405 (460)
T ss_pred -------------ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence 23667778888887774 7888899999999986542211111100 0011
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 836 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~ 836 (1102)
...+..|.+.+|...|..|++|. |.+|++|.-..
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 11456799999999999999998 99999997543
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=282.78 Aligned_cols=290 Identities=19% Similarity=0.309 Sum_probs=246.8
Q ss_pred ccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccC-CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEE
Q 001311 403 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1102)
.+.||...|+++.|.| .+.+|++++.|+.|+||++-. +.+++ ++.||..+|.+++|+.+|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5889999999999999 999999999999999999987 55555 6899999999999999999 699999999999
Q ss_pred EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311 481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 560 (1102)
Q Consensus 481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 560 (1102)
+||+++|+++..+. -...++++.|++++ .+.+++|+.|+.|+.||+++++.+..+..|-+.+..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999986 45567888988766 47899999999999999999998888888888888888777775
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
++++.++|++++||+...+..+...... ......++..+|++.++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 6999999999999999888766554322 223678899999999999999999999997543311
Q ss_pred ce--eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311 641 LL--RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 718 (1102)
Q Consensus 641 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 718 (1102)
.- +.+++
T Consensus 420 ~nkkK~feG----------------------------------------------------------------------- 428 (503)
T KOG0282|consen 420 LNKKKRFEG----------------------------------------------------------------------- 428 (503)
T ss_pred cCHhhhhcc-----------------------------------------------------------------------
Confidence 10 00000
Q ss_pred cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311 719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 798 (1102)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1102)
|
T Consensus 429 -------------------h------------------------------------------------------------ 429 (503)
T KOG0282|consen 429 -------------------H------------------------------------------------------------ 429 (503)
T ss_pred -------------------e------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311 799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 876 (1102)
Q Consensus 799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 876 (1102)
.-.+....+.|||||++|++|+ ||.+.+||.++.+.+..++.|...+..+.|+|.....+|+++.||.|++||
T Consensus 430 -----~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 430 -----SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 0123345688999999999998 999999999999999999999999999999998889999999999999996
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=272.66 Aligned_cols=232 Identities=20% Similarity=0.357 Sum_probs=203.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
..+.|.|+.+..+ .+++|..|++|.|||.++-+++. ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 4578999998644 39999999999999999877765 589999999999994 66999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---eEEeecCCCCeE
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 501 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h~~~v~ 501 (1102)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.++.|||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999876 57889999999999753 799999999999999987654 357889999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
.+.|. . +++++++.|.+|++|++.+.+.+.++.+|...|.++.+ .++++++|+
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-----------------------r~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-----------------------RDRLVVSGS 377 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc-----------------------cCeEEEecC
Confidence 99873 2 69999999999999999999999888888877766654 235789999
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.|.+|++||+..|.++..+++|.. -|.++.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999998865 6889999 6688999999999999998776
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=276.56 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=238.7
Q ss_pred ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC
Q 001311 453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 532 (1102)
Q Consensus 453 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 532 (1102)
..+|..|.|.|+|+ .|++|+..|.+.+|+..+-.....++.|..+|.++.|+ .++.+++||+.+|.|++|+..-..
T Consensus 96 kc~V~~v~WtPeGR--RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR--RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWS--HNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCc--eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEc--cCCCEEEEcCCCceEEecccchhh
Confidence 45899999999999 79999999999999975444444567899999999985 556899999999999999876422
Q ss_pred CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeE
Q 001311 533 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 612 (1102)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 612 (1102)
. ..+.+|+...|++++|+|+...|+++++||+|+|||....+....+.+|+- .|.++
T Consensus 172 V---------------------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw--dVksv 228 (464)
T KOG0284|consen 172 V---------------------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW--DVKSV 228 (464)
T ss_pred h---------------------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC--Cccee
Confidence 2 233344444566666666667899999999999999999988888887766 79999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCC
Q 001311 613 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 692 (1102)
Q Consensus 613 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1102)
.|+|...+|++++.|..|++||.+++ .++..+.
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg-~cl~tlh---------------------------------------------- 261 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSG-SCLATLH---------------------------------------------- 261 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCc-chhhhhh----------------------------------------------
Confidence 99999999999999999999999888 3322221
Q ss_pred CCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccc
Q 001311 693 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 772 (1102)
Q Consensus 693 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 772 (1102)
T Consensus 262 -------------------------------------------------------------------------------- 261 (464)
T KOG0284|consen 262 -------------------------------------------------------------------------------- 261 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001311 773 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 851 (1102)
Q Consensus 773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~ 851 (1102)
+|...|..+.|++++.+|++++ |..++++|+++.+.+.++++|...++
T Consensus 262 -------------------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 262 -------------------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred -------------------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 1667788888888888899988 88999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 852 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 852 ~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
+++|+|-...+|.+|+.||.|..|.+...+.+..+ .+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999988899999999999999999855555444 6799999999999999999999999999999744
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-31 Score=300.79 Aligned_cols=255 Identities=21% Similarity=0.384 Sum_probs=215.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
|...|.|+.|||||++ +++++.|+.|++|+..+.+ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4899999999999997 9999999999999997666 322 35899999999999999999
Q ss_pred EEEEECCCeEEEEEcc-CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 423 FGVAYSRHIVQIYSYH-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 423 las~~~d~~v~vwd~~-~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
+++++.|++|+|||+. .+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 434444 6889999999999999996 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCceeeeccccC-ceeEEEEcCCCCEEE
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKR-SLGVVQFDTTKNRFL 578 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~-~i~~~~~~~~~~~l~ 578 (1102)
+++| .+++.+|++++.|+.|++||+.++.. ...+..+ ... .+..+.|+|++.+++
T Consensus 293 ~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------------~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 293 GLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA--------------------ENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred EEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCC--------------------CCCCceeEEEECCCCcEEE
Confidence 9997 56678999999999999999998763 2222222 222 456666777777999
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
+++.|+.+++||+..+.....+..+... ..+.+..+++.+.++++|+.|+.|++|+..++ ..+..+.+
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 9999999999999999999998877653 23445566789999999999999999999886 44444444
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-31 Score=301.43 Aligned_cols=289 Identities=27% Similarity=0.423 Sum_probs=246.1
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+ .+|...|.+++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLREL--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccc--cccccceeeeEECCC
Confidence 46789999999999999999999999999862211 0 111112 349999999999999
Q ss_pred CCeEEEEe-CCeEEEEEc-CCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311 818 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 895 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1102)
++++++++ |++|+|||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+++++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 999999999 56689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEe
Q 001311 896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 974 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~ 974 (1102)
++|++|+.+|++++.|+.|+|||+.++... +.....++.... .++.+.|+|++++++++ .|+.+++||+..+...
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 344555555433 68999999999999996 7779999999999999
Q ss_pred eeeccCCCCC---CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311 975 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus 975 ~~~~~~~h~~---~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
..+. +|.. .+.+..++++++++++|+.|+.|++||+.++..++++. +|....+. .+.++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 9887 4544 45566678899999999999999999999999988887 44222234 788888 47889
Q ss_pred EEEe--cCCcEEEEecc
Q 001311 1052 ALGL--SDGGVHVFEPL 1066 (1102)
Q Consensus 1052 ~s~~--~Dg~v~vW~~~ 1066 (1102)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 8888 79999999864
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=246.60 Aligned_cols=245 Identities=17% Similarity=0.213 Sum_probs=216.2
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+-.|.+.|.++.|+-||+| .++++.|.+|++||...+..+++ ..+|..+|..++.+.|..
T Consensus 13 l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~s~Dns 72 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAALSSDNS 72 (307)
T ss_pred ecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeecccccccc
Confidence 3459999999999999998 88888899999999999999884 889999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC--CeeeEEeecCCCC
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEAP 499 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~--~~~~~~~~~h~~~ 499 (1102)
.+++|+.|..|.+||+++|+.++ .+++|.+.|+.++|+.+.. ++++|+.|.++++||.++ .++++.+......
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred ccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 99999999999999999999877 4899999999999999998 899999999999999986 4678889888889
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|.++.+. +..|++|+.||++|.||++.+.....+- ..+++++.|+++++..++
T Consensus 148 V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy~-----------------------g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 148 VSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDYF-----------------------GHPITSVSFSKDGNCSLA 200 (307)
T ss_pred eeEEEec----ccEEEeeccCCcEEEEEeecceeehhhc-----------------------CCcceeEEecCCCCEEEE
Confidence 9988753 2579999999999999998765433222 236777777777789999
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++.|+++++.|-.+|+++..+.+|.....=..++++.....+++|++||.|.+||+.+.
T Consensus 201 ~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 99999999999999999999998877655567788888899999999999999999877
No 56
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=7.5e-30 Score=268.55 Aligned_cols=625 Identities=15% Similarity=0.190 Sum_probs=342.6
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
+.+..+-.|.+.|+.+.|||-...||||++.|..|+||.+..+-... +.-....+.+..-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeec
Confidence 44555566999999999999888899999999999999998442221 11122234555568999999
Q ss_pred ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC-CeeeEEeec
Q 001311 417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG 495 (1102)
Q Consensus 417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~-~~~~~~~~~ 495 (1102)
+|...-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++++.|+.|+|||.+. ++.++...+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9976666666678999999999988654 6899999999999999999 899999999999999985 678888899
Q ss_pred CCCCeEE-EeeeecCCccEEEEEeCC----CeEEEEEcCCCCC-eee--ecCCCCeeeEEEEccCCcee-eeccccCcee
Q 001311 496 HEAPVYS-VCPHHKENIQFIFSTALD----GKIKAWLYDNLGS-RVD--YEAPGRWCTTMAYSADGTRT-YQGFRKRSLG 566 (1102)
Q Consensus 496 h~~~v~~-v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~-~~~--~~~~~~~v~~~~~s~~~~~~-~~~~~~~~i~ 566 (1102)
|.+.-.+ +.| -++-..|++.+.+ ..|++||.+.-.. ..+ +.... .|.--.+.||.+.+ +.|.....+.
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEE
Confidence 9775222 334 4444567777654 5689999876432 222 21111 12222344444422 2333333444
Q ss_pred EEEEcCCCCEEEEE--------------eCCCeE--------EEEECCCcceEEE--------E-cCC------------
Q 001311 567 VVQFDTTKNRFLAA--------------GDDFSI--------KFWDMDSVQLLTS--------I-DAD------------ 603 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~--------------~~dg~i--------~iwd~~~~~~~~~--------~-~~~------------ 603 (1102)
++.+.+...+|.-+ .....+ +++.+.....+-. + ..|
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 44443332211100 000011 1111111110000 0 000
Q ss_pred ---------CCCCCcCeEEEcCCCC-------------EEE-EEE---------------C-----CC------------
Q 001311 604 ---------GGLPASPRIRFNKDGC-------------LLA-VST---------------N-----DN------------ 628 (1102)
Q Consensus 604 ---------~~~~~v~~~~~s~~~~-------------~l~-~~~---------------~-----dg------------ 628 (1102)
+....+..+++.|..+ ..+ +++ + |.
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~ 448 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPK 448 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCc
Confidence 0001111222222100 000 000 0 00
Q ss_pred --cEEEEEccCCccceee---------cccccccccccCCCCCCCcccchhhhH-----hhhhccccccccccccccCCC
Q 001311 629 --GIKILATSDGIRLLRT---------FENLAYDASRTSENSKPTISPISAAAA-----AAATSAGLADRAASMVSIPGM 692 (1102)
Q Consensus 629 --~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 692 (1102)
.++-.+.+........ -++.+..+............+.+.... ...+.+... +..|......+
T Consensus 449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~ 527 (1012)
T KOG1445|consen 449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNF 527 (1012)
T ss_pred chhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCccc
Confidence 0000000000000000 000000000000000000000000000 000000000 00000000000
Q ss_pred CCCccccCCCCccccccCC------CccceEecccCCC------CCccccccCCCcccccceEEEEEccCCceEE--Eee
Q 001311 693 NGDVRSLADVKPRITEESN------DKSKVWKLTELSE------PNQCRSLRLPENLRATKISRLIFTNSGNAIL--ALA 758 (1102)
Q Consensus 693 ~~~~~~~~~~~~l~~~~~d------~~i~~w~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~--~~~ 758 (1102)
.. ..+.......+.+-. |.+--|.--.+.. ...++.+... -.+. +--|+.+..+++ ..+
T Consensus 528 g~--~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~---~PgE--snGfcan~~rvAVPL~g 600 (1012)
T KOG1445|consen 528 GK--PISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR---LPGE--SNGFCANNKRVAVPLAG 600 (1012)
T ss_pred CC--CccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc---CCCc--cCceeeccceEEEEecC
Confidence 00 000000000000000 1111111111000 0011111100 0011 112333333343 345
Q ss_pred cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-CCeEEEEEcCC
Q 001311 759 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMT 836 (1102)
Q Consensus 759 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-dg~I~iwd~~~ 836 (1102)
..|.|-||+++....-+++. +.+......|+.+.|+| |...||+++ ||.|++|.+..
T Consensus 601 ~gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred CCceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 57899999986544433332 22223567799999998 677889888 89999999865
Q ss_pred Cc-------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc
Q 001311 837 FK-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 909 (1102)
Q Consensus 837 ~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 909 (1102)
+. .-..+..|...|+.+.|+|--...|++++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+|+.+
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc 739 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC 739 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee
Confidence 32 34567889999999999997788999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeC----CeEEEEEcCCce--EeeeeccCCC
Q 001311 910 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLE--CVKQWVPRES 982 (1102)
Q Consensus 910 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d----~~i~iwd~~~~~--~~~~~~~~~h 982 (1102)
.||+|+||+-.+++. .+.++..+....-..+.|.-||+++++ +.| .+|.+||..+.. .+.+...+-
T Consensus 740 KDg~~rVy~Prs~e~------pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv- 812 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSREQ------PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV- 812 (1012)
T ss_pred cCceEEEeCCCCCCC------ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-
Confidence 999999999887653 223333333344568899999999988 544 578899987644 222211110
Q ss_pred CCCeeEEEEcCCCc-EEEEEeCCCeEEEEEcCCceeE
Q 001311 983 SAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus 983 ~~~v~~l~~spd~~-~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
.-.+.--.+.+|.. ++++|-.|..|..|.+......
T Consensus 813 aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 813 APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred cCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence 11222233455655 5678889999999998665543
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=5.9e-32 Score=277.91 Aligned_cols=264 Identities=17% Similarity=0.239 Sum_probs=216.3
Q ss_pred Cccceeec-cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC-CeeEEeeeeeeeccCCCCccccccccCCCCCCeEE
Q 001311 336 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 413 (1102)
Q Consensus 336 ~~~~~~~~-~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1102)
|++..+++ +|+..|+++.|.|-.-+||++|+.|+.|+||++.. +++++ ++.+|..+|..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhhh
Confidence 44444444 59999999999995555899999999999999987 66655 58999999999
Q ss_pred EEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe
Q 001311 414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 493 (1102)
Q Consensus 414 l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~ 493 (1102)
++|+++|..+.+++.|+.|++||+++|+++.... -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.+
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999999999999999876432 2457899999999955 7899999999999999999999999
Q ss_pred ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 494 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
..|-+.|..+.|. ++|..+++.+.|+++++|+.+..-.+..... .......++..+|+
T Consensus 339 d~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 339 DRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIAD--------------------PEMHTMPCLTLHPN 396 (503)
T ss_pred HhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcc--------------------hhhccCcceecCCC
Confidence 9999999999984 5668999999999999999987554432111 11225567788888
Q ss_pred CCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311 574 KNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
++++++-+.|+.|.++.+...- ....+.+|.-.+.-..+.|||||.+|++|+.||.+.+||.++- +.+..++
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk 471 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK 471 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence 8899999999999999865432 2344556655556678999999999999999999999999876 4444443
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.8e-31 Score=264.80 Aligned_cols=287 Identities=15% Similarity=0.280 Sum_probs=238.1
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
..|.+.|.-+.||++|++|++++.|.+..+|.+.. |.. ..+...+ .+|..+|..+.||
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------------------d~~--~kl~~tl--vgh~~~V~yi~wS 278 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------------------DVH--FKLKKTL--VGHSQPVSYIMWS 278 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec------------------Ccc--eeeeeee--ecccCceEEEEEC
Confidence 45899999999999999999999999999998732 222 1112122 3499999999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-cc
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KR 892 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~ 892 (1102)
||.+++++++ +..+.+||+.++.+...+. ++...+.+++|.| ||..+++|+.|+.+..||+. |..+..+++-. ..
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPK 356 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccccccce
Confidence 9999999998 8889999999999887765 3457899999999 99999999999999999986 55566666543 56
Q ss_pred ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCc
Q 001311 893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 971 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~ 971 (1102)
|.+++.++||+++++.+.|..|++++.++..... ....+ .+|+++.+|.||+++.+. .+..+++||++..
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 8999999999999999999999999998743321 12222 378999999999999995 8999999999988
Q ss_pred eEeeeeccCCC--CCCeeEEEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311 972 ECVKQWVPRES--SAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus 972 ~~~~~~~~~~h--~~~v~~l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
..++.+. || ..-|-.-||-- |..++++||+|+.|+||+..+|+++..+. ||... |+ +|+|+|.|+
T Consensus 428 ~lv~kY~--Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-------GHs~~-vN--cVswNP~~p 495 (519)
T KOG0293|consen 428 KLVRKYF--GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-------GHSKT-VN--CVSWNPADP 495 (519)
T ss_pred hHHHHhh--cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-------CCcce-ee--EEecCCCCH
Confidence 8888776 55 33444445654 56899999999999999999999999887 76544 77 899999999
Q ss_pred CEEEEEecCCcEEEEeccC
Q 001311 1049 NEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1049 ~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
.++|++|+||+|+||.+..
T Consensus 496 ~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 496 EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHhhccCCCCeEEEecCCc
Confidence 9999999999999998864
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.4e-30 Score=239.81 Aligned_cols=213 Identities=21% Similarity=0.342 Sum_probs=182.6
Q ss_pred cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
.++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 4688999999999999999999999999999999999998776 6889999999999999998 6999999999999
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
||+.+|+.++.|.+|.+.|+.+.|+ .+...+++|+.|.++++||.+.. ++++.+......|.++.+
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---------- 153 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---------- 153 (307)
T ss_pred EEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe----------
Confidence 9999999999999999999999985 44479999999999999999864 333444433344444433
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
.+..+++|+.||++|.||++.|.....+-++ +|++++|++|++.+++++-|+++++.|-.+|
T Consensus 154 -------------~~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 154 -------------AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred -------------cccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 2346999999999999999999877666533 7999999999999999999999999999988
Q ss_pred cceeeccccc
Q 001311 640 RLLRTFENLA 649 (1102)
Q Consensus 640 ~~~~~~~~~~ 649 (1102)
++++...+|.
T Consensus 216 klL~sYkGhk 225 (307)
T KOG0316|consen 216 KLLKSYKGHK 225 (307)
T ss_pred HHHHHhcccc
Confidence 6766666554
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=8.4e-32 Score=263.88 Aligned_cols=273 Identities=21% Similarity=0.326 Sum_probs=228.0
Q ss_pred cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC
Q 001311 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 531 (1102)
Q Consensus 452 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1102)
....|.|+.+. |+ .+++|..|++|+|||..+-.+++.+.||++.|.|+.+ +. ..|++|+.|.+|++||+.++
T Consensus 196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~--rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DE--RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cc--eEEEecCCCceEEEEeccCC
Confidence 45689999984 33 4999999999999999999999999999999998875 22 69999999999999999999
Q ss_pred CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE---EEEcCCCCCCC
Q 001311 532 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPA 608 (1102)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 608 (1102)
+.+.++-.|...|..+.|+. +++++++.|.++.+||+.+...+ ..+.+| ...
T Consensus 268 e~l~tlihHceaVLhlrf~n-----------------------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAa 322 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN-----------------------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAA 322 (499)
T ss_pred chhhHHhhhcceeEEEEEeC-----------------------CEEEEecCCceeEEEeccCchHHHHHHHHhhh--hhh
Confidence 99999998888888887754 47999999999999999876532 233334 446
Q ss_pred cCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccc
Q 001311 609 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 688 (1102)
Q Consensus 609 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1102)
|+.+.|+ .+++++++.|.+|++|++.++ +.++.+.+
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g----------------------------------------- 358 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG----------------------------------------- 358 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence 8778884 569999999999999998887 55554433
Q ss_pred cCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeec
Q 001311 689 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 768 (1102)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~ 768 (1102)
T Consensus 359 -------------------------------------------------------------------------------- 358 (499)
T KOG0281|consen 359 -------------------------------------------------------------------------------- 358 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC
Q 001311 769 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP 847 (1102)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~ 847 (1102)
|...|.|+.+ .|+++++|+ |.+|++||+..|.+++.++||.
T Consensus 359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 3344444443 677899998 9999999999999999999999
Q ss_pred CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 848 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 848 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
.-|.|+.|. .+.+++|..||+|+|||+..+. |+..+..|++.|..+.| |...+++++.|.+|.|||
T Consensus 401 eLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 ELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred Hhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999994 5789999999999999998753 45566779999999999 678999999999999999
Q ss_pred cCCCcc
Q 001311 919 SDGWEK 924 (1102)
Q Consensus 919 ~~~~~~ 924 (1102)
+..+..
T Consensus 476 Fl~~~~ 481 (499)
T KOG0281|consen 476 FLNGPP 481 (499)
T ss_pred cCCCCc
Confidence 987543
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6e-29 Score=306.98 Aligned_cols=310 Identities=15% Similarity=0.218 Sum_probs=225.0
Q ss_pred CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC----cee
Q 001311 368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 443 (1102)
Q Consensus 368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~----~~~ 443 (1102)
+|.+++|+..+.+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 678899998765543321 11125569999999999999999999999999999998642 111
Q ss_pred e-eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCe
Q 001311 444 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 522 (1102)
Q Consensus 444 ~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~ 522 (1102)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|.+.|++++|++ .++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p-~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS-ADPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC-CCCCEEEEEcCCCE
Confidence 1 112233 3468999999986433 799999999999999999999999999999999999864 24467888888888
Q ss_pred EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311 523 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
|++||+.++ ..+..+..
T Consensus 600 v~iWd~~~~---------------------------------------------------------------~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSINQG---------------------------------------------------------------VSIGTIKT 616 (793)
T ss_pred EEEEECCCC---------------------------------------------------------------cEEEEEec
Confidence 888876542 22222221
Q ss_pred CCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001311 603 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 681 (1102)
Q Consensus 603 ~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1102)
+ ..+.++.|+ +++.+|++|+.||.|++||+.+.......+
T Consensus 617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------------------------------------ 657 (793)
T PLN00181 617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------------------------------------ 657 (793)
T ss_pred C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------------------------------------
Confidence 1 136678884 579999999999999999986541111111
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCc
Q 001311 682 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 761 (1102)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 761 (1102)
.+
T Consensus 658 ------------------------------------------------------~~------------------------ 659 (793)
T PLN00181 658 ------------------------------------------------------IG------------------------ 659 (793)
T ss_pred ------------------------------------------------------cC------------------------
Confidence 01
Q ss_pred eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC----
Q 001311 762 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---- 836 (1102)
Q Consensus 762 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~---- 836 (1102)
|...|.++.|. ++.+|++++ |++|++||+..
T Consensus 660 -------------------------------------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 660 -------------------------------------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -------------------------------------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 33444444443 344455554 55555555542
Q ss_pred --CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-------------eccccccceeEEEecC
Q 001311 837 --FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHA 901 (1102)
Q Consensus 837 --~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d 901 (1102)
...+..+.+|...+.+++|++ ++.+||+|+.||.|++|+......+.. ...|...|.+++|+++
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 245677889999999999999 889999999999999999765432211 2345667999999999
Q ss_pred CCEEEEEcCCCcEEEEEc
Q 001311 902 LNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 902 ~~~l~s~s~Dg~i~vwd~ 919 (1102)
+..|++|+.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.4e-28 Score=269.20 Aligned_cols=246 Identities=25% Similarity=0.413 Sum_probs=208.4
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
.+|.+.|++++|+|++++ +++|+.||.|++|++.+++... .+..|...+.++.|+|++++
T Consensus 6 ~~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTY 65 (289)
T ss_pred cccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCE
Confidence 369999999999999995 8899999999999998876544 36788899999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
|++++.|+.|++||+.+++.+. .+..|...|.++.|++++. ++++++.|+.|++||+.+++.+..+..|...|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 9999999999999999876544 4678999999999999977 7888888999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
++|++. +.++++++.|+.|++||++..+....+..+...+.++ .++++++.+++++.
T Consensus 141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~~~l~~~~~ 197 (289)
T cd00200 141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV---------------------AFSPDGEKLLSSSS 197 (289)
T ss_pred EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceE---------------------EECCCcCEEEEecC
Confidence 998654 5788888889999999998766665555554444444 45555557888888
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++.|++||+..++.+..+..+.. .+.++.|++++.++++++.+|.|++|+..++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 99999999999888887754533 6899999999989998888999999998765
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.4e-28 Score=269.19 Aligned_cols=285 Identities=27% Similarity=0.467 Sum_probs=238.8
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 527 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd 527 (1102)
++.+|.++|++++|+|+++ ++++++.|+.|++||+.+++....+.+|...+..+.|. ++++++++++.||.|++|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS--ADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC--CCCCEEEEEcCCCeEEEEE
Confidence 4678999999999999998 79999999999999999999888999999999888875 4447999999999999999
Q ss_pred cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 607 (1102)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 607 (1102)
+...+....+..+...+.++.|++ +++++++++.++.|++||+.+++....+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSP---------------------DGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--D 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcC---------------------CCCEEEEecCCCeEEEEECCCcEEEEEeccCC--C
Confidence 998766665555554555555544 44567777779999999999888888887543 4
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001311 608 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 687 (1102)
Q Consensus 608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1102)
.+.++.|+|++.++++++.+|.|++||+.++ +....+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~----------------------------------------- 174 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLT----------------------------------------- 174 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEe-----------------------------------------
Confidence 6899999999999998888999999997644 1110000
Q ss_pred ccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311 688 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
T Consensus 175 -------------------------------------------------------------------------------- 174 (289)
T cd00200 175 -------------------------------------------------------------------------------- 174 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001311 768 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 846 (1102)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~ 846 (1102)
.|...+.+++|+++++.+++++ ++.|++||+.+++.+..+..|
T Consensus 175 ------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 175 ------------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ------------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0455677888888887777777 889999999888888888788
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
...+.+++|++ ++.++++++.||.|++||+.+++....+.+|...|.+++|++++++|++++.|+.|++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788999888899999999999999999999999999999999999999999999999996
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-29 Score=239.63 Aligned_cols=295 Identities=19% Similarity=0.287 Sum_probs=229.6
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||--.+|+.+. ++.||.+.|+|+....+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 578999999999999999999999999999999998888776 6899999999999999999 79999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-----CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
|+.+|+++..++ ...+|..+.|++.. ++++.... .+.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999998 66788888886543 44444332 13344444432110
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
++...+++..+..+. ..++.+-|+|-+++|++|..||.|.+||+++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111334455555443 3688899999999999999999999999988
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
+.+.+...+
T Consensus 179 g~~~v~s~~----------------------------------------------------------------------- 187 (327)
T KOG0643|consen 179 GKELVDSDE----------------------------------------------------------------------- 187 (327)
T ss_pred Cceeeechh-----------------------------------------------------------------------
Confidence 733222110
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 797 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1102)
T Consensus 188 -------------------------------------------------------------------------------- 187 (327)
T KOG0643|consen 188 -------------------------------------------------------------------------------- 187 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC------
Q 001311 798 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 870 (1102)
Q Consensus 798 ~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 870 (1102)
.|...|+.+.+++|..++++++ |.+-++||+.+.++++++. -..+|++.+++|.....+..|+.+.
T Consensus 188 ------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 188 ------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred ------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence 1666788888888888999998 8999999999999999887 4567999999994444444444432
Q ss_pred -------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 871 -------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 871 -------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
.-++|++-..+.+...++|-++|++|+|+|||+..++|+.||.|++.-++.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 123333333456677899999999999999999999999999999987664
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2e-28 Score=302.33 Aligned_cols=253 Identities=14% Similarity=0.172 Sum_probs=200.3
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 420 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 420 (1102)
...|...|++++|+|+|++ +|+|+.|+.|+|||+.+...... ........+ .+...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~-~~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVVEL-ASRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceEEe-cccCceeeEEeccCCC
Confidence 3458999999999999995 99999999999999864211000 000000012 2346899999988 58
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
.+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++.++..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999887554 5789999999999997 666 7999999999999999999999888855 67
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
|.++.|. .+++.+|++|+.||.|++||++... ....+..|...|..+.|. ++.+++
T Consensus 620 v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~----------------------~~~~lv 676 (793)
T PLN00181 620 ICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV----------------------DSSTLV 676 (793)
T ss_pred eEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe----------------------CCCEEE
Confidence 8888884 3567899999999999999998754 344555565555555553 235699
Q ss_pred EEeCCCeEEEEECCCc------ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 579 AAGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+++.|++|++||+..+ ..+..+.+|. ..+.+++|++++.+|++|+.||.|++|+....
T Consensus 677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999743 4667777654 36788999999999999999999999997654
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=242.03 Aligned_cols=288 Identities=17% Similarity=0.291 Sum_probs=242.8
Q ss_pred ccCCCCCCeEEEEEcc---CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311 403 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 479 (1102)
+..||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||.+.|+......+-. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4689999999999997 89999999999998888888888776 6999999999999988877 68999999999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
+|||.-+|..+++|. |..-|.+++|+ .|.++|++|+.++.+|+||++..+..
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~Ap------------------------- 135 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAP------------------------- 135 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCC-------------------------
Confidence 999999999999997 88889999984 44467888888888888877643221
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
...+. ++...|..+.|....+.+++.+.|++||+||.+++
T Consensus 136 -------------------------------------p~E~~--ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg- 175 (334)
T KOG0278|consen 136 -------------------------------------PKEIS--GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG- 175 (334)
T ss_pred -------------------------------------chhhc--CCCCcceeEEEeccCceEEeeccCCceEEEEeccC-
Confidence 12222 23446888888888888888899999999999888
Q ss_pred cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311 640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 719 (1102)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 719 (1102)
..++.+.
T Consensus 176 t~v~sL~------------------------------------------------------------------------- 182 (334)
T KOG0278|consen 176 TEVQSLE------------------------------------------------------------------------- 182 (334)
T ss_pred cEEEEEe-------------------------------------------------------------------------
Confidence 2222110
Q ss_pred ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311 720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 799 (1102)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 799 (1102)
T Consensus 183 -------------------------------------------------------------------------------- 182 (334)
T KOG0278|consen 183 -------------------------------------------------------------------------------- 182 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 800 VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 800 ~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
...+|+++.+++||++|.++..+.|.+||..+...++.++- ...|.+..++| +...++.|++|+.++.||..+
T Consensus 183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 34567888899999999888889999999999998888774 44599999999 778999999999999999999
Q ss_pred ceeeeee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311 880 DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 923 (1102)
Q Consensus 880 ~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 923 (1102)
++.+... ++|.++|-|+.|+|||...++|+.||+|++|....++
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9988886 9999999999999999999999999999999887654
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=8.4e-29 Score=239.48 Aligned_cols=312 Identities=13% Similarity=0.168 Sum_probs=232.5
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
..+..|++.+.+.+|||||. |+|||+.|..|+|.|++..-... ....+..-...........+-.|.++|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 34556999999999999999 59999999999999997210000 00000000011111112367899999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---ecC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH 496 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---~~h 496 (1102)
..+|++|+.|++|++||+......+.++.+. ...+|.++.|.|.|. +|+.|..-.++++||+.+-+|...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999998654333333332 456899999999999 7888988899999999998886544 469
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 576 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 576 (1102)
.+.|+++.+ ++.+++-++++.||.|++||--..+++.++. ..|.+..+.+..|..++++
T Consensus 261 t~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------------------~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 261 TGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-------------------NAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred ccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHH-------------------hhcCCceeeeEEEccCCeE
Confidence 999999886 5666899999999999999987777665442 2233346666667777779
Q ss_pred EEEEeCCCeEEEEECCCcceEEEEcCCCCCCC---cCeEEEcCCCCEEEEEEC-CCcEEEEEccCCccceeecccccccc
Q 001311 577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLAYDA 652 (1102)
Q Consensus 577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 652 (1102)
+++.|.|..+++|.+.+++++..+.+.+..+. -+...|+....+++.-.+ .+.+.-||.++..+
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr------------ 387 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR------------ 387 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh------------
Confidence 99999999999999999999999886643222 233456666666655433 46778888776621
Q ss_pred cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccccc
Q 001311 653 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 732 (1102)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 732 (1102)
+.+|.
T Consensus 388 -------------------------------------------------------------~~l~s-------------- 392 (430)
T KOG0640|consen 388 -------------------------------------------------------------VALLS-------------- 392 (430)
T ss_pred -------------------------------------------------------------hhhcc--------------
Confidence 11222
Q ss_pred CCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311 733 LPENLRATKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 733 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
.+|++.+..+.-+|.+..+++++.|..+++|-
T Consensus 393 ---lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 393 ---LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ---cCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 23889999999999999999999999999995
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.7e-30 Score=246.95 Aligned_cols=292 Identities=19% Similarity=0.287 Sum_probs=238.1
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
+....+.+..|+|||++|++++-||.|.+|+..+++...+-+..+. .. .+ -+..+|.|+.|+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FM-------MMDDAVLCISFSR 273 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-ee-------ecccceEEEeecc
Confidence 3556788999999999999999999999999866544333322221 11 11 1678899999999
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 894 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1102)
|...+|+|+ ||.|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+++|++++.++||++.|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999987 8999999999999 888999999999999999999999999999999999
Q ss_pred eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE-eCCeEEEEEcCCce
Q 001311 895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQLAIFETTKLE 972 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~-~d~~i~iwd~~~~~ 972 (1102)
...|++||..+++++.||+|+||+.++.+... .+... ....+|..+..-| +-..++++ ..++|+|.++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 99999999999999999999999999876532 22111 1123566666666 34455554 77889888874 67
Q ss_pred EeeeeccC-CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311 973 CVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus 973 ~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
.++.+... ...+..-+.+.||.|.++.+.++|+.++.|.+.+|++...+..+. .-++.++.+|. .++|
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHPH-qNll 494 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHPH-QNLL 494 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCcc-cchh
Confidence 77777532 235677788899999999999999999999999999998877222 22447999994 6899
Q ss_pred EEEecCCcEEEEe
Q 001311 1052 ALGLSDGGVHVFE 1064 (1102)
Q Consensus 1052 ~s~~~Dg~v~vW~ 1064 (1102)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999996
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=220.17 Aligned_cols=275 Identities=17% Similarity=0.248 Sum_probs=212.7
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
...++.....|.+|+|+|.|. |.|+|+..++.+|-....-..++. ..+..........+.-+.|.+.|.|.+|||
T Consensus 25 ~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred EEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecC
Confidence 455777889999999999999 699999999999987643222210 000001111122234678999999999999
Q ss_pred CCCeEEEEECCCeEEEEEcc--CCceeeeEEEeeccccCEEEEEEcCC---CCeeEEEEec-CCCcEEEEeCCCCeeeEE
Q 001311 419 DGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~-~d~~i~vWd~~~~~~~~~ 492 (1102)
+|++||+|++|.+|++.-.+ +......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..+.
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999997554 33334444568889999999999755 233 566654 688899999999999999
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
+.||++.|.++- +-++.++++|+.|.+|++||++-..+..++... +.-.|.....+..++++|
T Consensus 179 ~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 179 LSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVDP 241 (350)
T ss_pred ecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEECC
Confidence 999999998874 334579999999999999999876655543221 111223345677888899
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 573 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.|++|++|-.|....+||++.++.++.+..| ...|.|+.|+|...++++++.|..|++-|+...
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 9999999999999999999999999999766 458999999999999999999999999987543
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.9e-28 Score=241.46 Aligned_cols=255 Identities=16% Similarity=0.287 Sum_probs=205.1
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
..-...+-|.+.|.+|... +++ +.+|+.||.++|||.. |+... .+.||.++|..++|
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~~ 152 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVAW 152 (423)
T ss_pred CCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeEE
Confidence 3445567799999999998 565 9999999999999986 55554 48899999998888
Q ss_pred ccCC---CeEEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC------
Q 001311 417 SPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------ 486 (1102)
Q Consensus 417 spdg---~~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~------ 486 (1102)
--.. ..+++++.|.++++|.++.++.. .....-.||...|-+|+..++|. .+++|+.|.+|+||+..+
T Consensus 153 v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 153 VIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccc
Confidence 6533 35999999999999999887643 22223459999999999999999 799999999999999321
Q ss_pred -------------------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEE
Q 001311 487 -------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 547 (1102)
Q Consensus 487 -------------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1102)
+.++.++.||+.+|.++.|.. ...+++++-|.+|+.||+.+++....+...
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~------- 300 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------- 300 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-------
Confidence 234567889999999999954 358999999999999999997766544322
Q ss_pred EEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcC-CCCEEEE
Q 001311 548 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLAV 623 (1102)
Q Consensus 548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 623 (1102)
..+.++.++|..++|++|+.|..|++||.+++. ..+.+.+| ...|.++.|+| +...|++
T Consensus 301 ---------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 301 ---------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ---------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEE
Confidence 256777778878899999999999999998764 33455555 45899999999 5667889
Q ss_pred EECCCcEEEEEccCCcccee
Q 001311 624 STNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 624 ~~~dg~i~iwd~~~~~~~~~ 643 (1102)
++.|+++++||+++....+.
T Consensus 364 ~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred EecCCeEEEEEeccCCCcce
Confidence 99999999999988743433
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=7.9e-29 Score=232.69 Aligned_cols=285 Identities=18% Similarity=0.229 Sum_probs=243.4
Q ss_pred eeccCCCCeeEEEEec---CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 341 RTLNQGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~sp---dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
...+|+.+|..++||| +|- +|++++.|+.-.+-+-+||.-+. ++.||.+.|+..+..
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l~ 68 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATLN 68 (334)
T ss_pred EEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeecC
Confidence 3567999999999986 665 59999999999999999998887 489999999999999
Q ss_pred cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecC
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGH 496 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h 496 (1102)
.|..+.|+++.|-+.+|||.-+|..+. -..|..-|.+++|+.|.. +|+||+.++.+||+|++..+ +...+.+|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelh----sf~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELH----SFEHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhh----hhhhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 999999999999999999999998776 235889999999999999 79999999999999998764 46789999
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 576 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 576 (1102)
.+.|..+.|.... +.|++.+.|++||+||.+++.....+... ..|+++.++++|+
T Consensus 143 tg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~---------------------- 197 (334)
T KOG0278|consen 143 TGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGR---------------------- 197 (334)
T ss_pred CCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCC----------------------
Confidence 9999999886433 67888899999999999998877766543 3466666666665
Q ss_pred EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccC
Q 001311 577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 656 (1102)
Q Consensus 577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 656 (1102)
+++....+.|.+||..+...+..++..- .|.+.+++|+...+++|++|..++.||..++.+... +
T Consensus 198 ilTia~gssV~Fwdaksf~~lKs~k~P~---nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~----------- 262 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKSFGLLKSYKMPC---NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-Y----------- 262 (334)
T ss_pred EEEEecCceeEEeccccccceeeccCcc---ccccccccCCCceEEecCcceEEEEEeccCCceeee-c-----------
Confidence 6777778899999999999888887654 488999999999999999999999999988833211 0
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311 657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 736 (1102)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 736 (1102)
..
T Consensus 263 ------------------------------------------------------------------------------nk 264 (334)
T KOG0278|consen 263 ------------------------------------------------------------------------------NK 264 (334)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 03
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeecc
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQ 769 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 769 (1102)
+|.++|.++.|+|+|...++++.||+|++|.+.
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 488999999999999999999999999999864
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.8e-27 Score=237.48 Aligned_cols=303 Identities=16% Similarity=0.225 Sum_probs=226.6
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCC-eeEEEEecCCCcEEEE
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVW 482 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~vW 482 (1102)
..-|.+.|.++... ++++++|+.||.++|||..+... +.+.||.++|.+++|--.+. .-.+++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCCceE----EEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 45688999999888 89999999999999999987432 24889999999888753332 1159999999999999
Q ss_pred eCCCCee----eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC--eeeEEE----EccC
Q 001311 483 DATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--WCTTMA----YSAD 552 (1102)
Q Consensus 483 d~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~----~s~~ 552 (1102)
-++.+.. +....||...|.++.. .++|..+++|+-|.+|.+|+..+. ..-.++.... .-.... -...
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCC-ccccccccchhhhhhhhhhhcccccC
Confidence 9887754 3445699999999986 566789999999999999993221 1111100000 000000 0000
Q ss_pred CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
...++.||+. .+..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++.++|..++|++|+.|..|++
T Consensus 252 P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 252 PLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 0023334443 666666666 4569999999999999999999998887554 4899999999999999999999999
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
||.+++...+.
T Consensus 327 ~DPR~~~gs~v--------------------------------------------------------------------- 337 (423)
T KOG0313|consen 327 WDPRTGDGSVV--------------------------------------------------------------------- 337 (423)
T ss_pred cCCCCCCCcee---------------------------------------------------------------------
Confidence 99876611100
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 792 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 792 (1102)
...
T Consensus 338 -------------------------------~~s---------------------------------------------- 340 (423)
T KOG0313|consen 338 -------------------------------SQS---------------------------------------------- 340 (423)
T ss_pred -------------------------------EEe----------------------------------------------
Confidence 000
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCc-eeeeecCCCCCeeEEEEecCCCcEEEEEeCC
Q 001311 793 GIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDD 869 (1102)
Q Consensus 793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 869 (1102)
+ .+|.+.|.++.|+|... .|++++ |+++++||+++.. .+..+.+|...|.++.|. ++.+|++|+.|
T Consensus 341 -------~--~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD 409 (423)
T KOG0313|consen 341 -------L--IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGAD 409 (423)
T ss_pred -------e--ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCc
Confidence 1 12778888888888665 566777 9999999999877 889999999999999998 57899999999
Q ss_pred CcEEEEEe
Q 001311 870 SSIQIYNV 877 (1102)
Q Consensus 870 g~v~vwd~ 877 (1102)
.+|+|+.-
T Consensus 410 ~~l~i~~~ 417 (423)
T KOG0313|consen 410 NKLRIFKG 417 (423)
T ss_pred ceEEEecc
Confidence 99999864
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=246.57 Aligned_cols=260 Identities=18% Similarity=0.262 Sum_probs=211.6
Q ss_pred CCCccceeecc-CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311 334 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 412 (1102)
Q Consensus 334 ~~~~~~~~~~~-h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1102)
.+|......+. |.+.|..+.|-++... |++|+.|..|.+|++...+... ..++.|..+.|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it 223 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT 223 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence 33444445555 9999999999999775 9999999999999998765211 115788889999
Q ss_pred EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
.+.|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|+.||+..+.|.++
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecc
Confidence 99999999999999999999999999877554 6899999999999998877 599999999999999999999887
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
+. ....+..|+.. ...+++|-.|+.||+||.++.........++ .|+++..+.
T Consensus 299 ~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~--------------------- 351 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM--------------------- 351 (459)
T ss_pred cc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc---------------------
Confidence 75 33445666542 2578999999999999999887776665544 455555544
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311 573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 573 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 644 (1102)
++..+++++.|.++.+.|+++......+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++...
T Consensus 352 ~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~ 424 (459)
T KOG0288|consen 352 DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKV 424 (459)
T ss_pred CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEE
Confidence 445788889999999999999998888765432 234788999999999999999999999999988 44433
No 74
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-26 Score=243.40 Aligned_cols=586 Identities=16% Similarity=0.194 Sum_probs=339.7
Q ss_pred ccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceee---eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311 403 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~---~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 478 (1102)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|.... .-..+.+..-.|.++.|.|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 6889999999999999 88899999999999999998543211 11223344457899999998774 4444 45689
Q ss_pred EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceee
Q 001311 479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
++|||+.+++.+..+.+|...|.+..| +.||.+|++.+.|+.|+|||.+.... +....+|++
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~--------------- 214 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG--------------- 214 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCcccccccccc---------------
Confidence 999999999999999999999999998 57789999999999999999987543 333344432
Q ss_pred eccccCceeEEEEcCCCCEEEEEe----CCCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEE
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIK 631 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 631 (1102)
..-..+.|-.+-.+|++.+ .-..|++||.+. +..+.++...... .|.--.|.||.++|+.++ .+..+.
T Consensus 215 -----~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 215 -----MRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred -----chhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEE
Confidence 1122233333333566655 346799999875 3455555433322 344456889887766544 466777
Q ss_pred EEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC
Q 001311 632 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 711 (1102)
Q Consensus 632 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 711 (1102)
.+.+......+...-.+....... .+...+....-+..+
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~---------------------------------------GA~lvpkral~VM~~-- 327 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTL---------------------------------------GATLVPKRALHVMDG-- 327 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhc---------------------------------------cceecchhhhhhcch--
Confidence 777655422222111111110000 000000011111111
Q ss_pred CccceEecccCCCCCccccccCCC---------------------------cccccceEEEEEccCCc------------
Q 001311 712 DKSKVWKLTELSEPNQCRSLRLPE---------------------------NLRATKISRLIFTNSGN------------ 752 (1102)
Q Consensus 712 ~~i~~w~~~~~~~~~~~~~~~~~~---------------------------~~~~~~i~~~~~s~~g~------------ 752 (1102)
...+++.+.......... ..|. .+.+..+..+...|..+
T Consensus 328 EV~rvlQLt~~~ivPi~y--~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~ 405 (1012)
T KOG1445|consen 328 EVDRVLQLTKSSIVPIPY--IVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPT 405 (1012)
T ss_pred hhhhheecccCceeeccc--ccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCC
Confidence 112333333211111111 1110 01111222222221100
Q ss_pred -eEE----------------------EeecC-------------ceEEe-----eeccccccCCCCccc-----------
Q 001311 753 -AIL----------------------ALASN-------------AIHLL-----WKWQRTERNSSGKAT----------- 780 (1102)
Q Consensus 753 -~l~----------------------~~~~d-------------g~i~i-----w~~~~~~~~~~~~~~----------- 780 (1102)
..+ ..+++ ..++- +.-..+...++....
T Consensus 406 p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~ 485 (1012)
T KOG1445|consen 406 PKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPIST 485 (1012)
T ss_pred cccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccc
Confidence 000 00000 00000 000000000000000
Q ss_pred -----------cc-------ccceeccCCCccccc------------------------------------cccCC-CCC
Q 001311 781 -----------AS-------VAPQLWQPPSGIMMT------------------------------------NDVTD-SNP 805 (1102)
Q Consensus 781 -----------~~-------~~~~~w~~~~~~~~~------------------------------------~~~~~-~~~ 805 (1102)
++ .++.+..+.-|+.+. +.+.+ .+|
T Consensus 486 ~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~gh 565 (1012)
T KOG1445|consen 486 ISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGH 565 (1012)
T ss_pred cCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCcccc
Confidence 00 000000000000000 00000 011
Q ss_pred CC-------------CeeEEEEecCCCeEEE---EeCCeEEEEEcCCCc-eeee-ecC--CCCCeeEEEEecCCCcEEEE
Q 001311 806 EE-------------AVPCFALSKNDSYVMS---ASGGKISLFNMMTFK-TMAT-FMP--PPPAATFLAFHPQDNNIIAI 865 (1102)
Q Consensus 806 ~~-------------~i~~l~~s~d~~~las---~sdg~I~iwd~~~~~-~~~~-~~~--~~~~i~~l~~sp~d~~~las 865 (1102)
.+ +-.+=-|..+.+++|+ |+.|.|.||+++..- +.-. +.+ ....|+.+.|.|-|...||+
T Consensus 566 ks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV 645 (1012)
T KOG1445|consen 566 KSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV 645 (1012)
T ss_pred chhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee
Confidence 11 1111234445666665 337899999997532 2111 111 24469999999999999999
Q ss_pred EeCCCcEEEEEeecce-------eeeeeccccccceeEEEecC-CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC
Q 001311 866 GMDDSSIQIYNVRVDE-------VKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 937 (1102)
Q Consensus 866 g~~dg~v~vwd~~~~~-------~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 937 (1102)
+++||.|++|.+..+. .-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+. ...+.+|.
T Consensus 646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHt 720 (1012)
T KOG1445|consen 646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHT 720 (1012)
T ss_pred cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCc
Confidence 9999999999997642 34567889999999999985 57899999999999999998653 34456776
Q ss_pred CCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC----eEEEEEc
Q 001311 938 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSA 1012 (1102)
Q Consensus 938 ~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg----~I~vwd~ 1012 (1102)
. .|..++|||||+.+|+ +.||+|++|+...++..-.-....-...-..+.|.-||+++++.+.|. .|.+||.
T Consensus 721 d---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 721 D---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred C---ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 4 8999999999999999 799999999998765432211111123345567777999998888775 5889998
Q ss_pred CCcee--EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001311 1013 ANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus 1013 ~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
.+... +.+.. +-.. -.++--.|.++.+.++++|-.|..|++|.+....+-+-
T Consensus 798 q~l~~~pl~t~~----lDva-----ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~l 851 (1012)
T KOG1445|consen 798 QTLDLRPLYTQV----LDVA-----PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLL 851 (1012)
T ss_pred hhccCCcceeee----eccc-----CccccccccCCCceEEEecCCCceEEEEEecCCCceee
Confidence 76542 22211 0000 11222345565566789999999999999977664333
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.6e-27 Score=222.27 Aligned_cols=276 Identities=16% Similarity=0.243 Sum_probs=229.6
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE--EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~ 525 (1102)
.+.+|.+.|.+|+|+.+|. .|++|+.|+++.||++..++... ...+|.+.|..++|++... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 79999999999999999886654 4578999999999987554 68999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC
Q 001311 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 605 (1102)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 605 (1102)
||++..++........+. ..+.|+|+|++++.++.|..|.+.|.++.+.....+..-
T Consensus 92 wd~r~~k~~~~i~~~~en----------------------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~- 148 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGEN----------------------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF- 148 (313)
T ss_pred EEeccCcEEEEeeccCcc----------------------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence 999998877655443332 235677777899999999999999999888776665432
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001311 606 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 685 (1102)
Q Consensus 606 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1102)
.++-++|+-++.+++.....|.|.|...... +.+..+
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si---------------------------------------- 185 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI---------------------------------------- 185 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence 4677889888888777777788888764322 111111
Q ss_pred ccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEe
Q 001311 686 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765 (1102)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 765 (1102)
T Consensus 186 -------------------------------------------------------------------------------- 185 (313)
T KOG1407|consen 186 -------------------------------------------------------------------------------- 185 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec
Q 001311 766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 844 (1102)
Q Consensus 766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~ 844 (1102)
..|.....|+.|+|+|+++|+|+ |..+.+||+...-|.+.+.
T Consensus 186 -------------------------------------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 186 -------------------------------------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred -------------------------------------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 01667778899999999999999 8999999999999999999
Q ss_pred CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC
Q 001311 845 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 911 (1102)
Q Consensus 845 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 911 (1102)
-+.-+|..+.||. ||++||+|++|..|-|=++++|..+..++ +.++...|+|+|...+||-++.|
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999 99999999999999999999999888887 78889999999999999988776
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=241.82 Aligned_cols=269 Identities=18% Similarity=0.256 Sum_probs=213.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeec-cCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
.-.|.-.|+||+++||+++ ..+++.|++|.=|++.+++..... ..--+ +.....+.+..- .+|...|.+++.|+||
T Consensus 138 ~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~i-~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRYI-IERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDG 214 (479)
T ss_pred eccccCcceEEEeeccccc-eeecCCCcceeeeehhcCcccccc-cccchhhhhccCCCCccc-ccccceeEEEEEcCCC
Confidence 4459999999999999997 999999999999999999865210 00000 011122222222 4899999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.||.+.|
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999999999999999988665 5899999999999987666 58999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.++... .-+..+..|+.|+++++|++.. +....+.++.+.+.+++|-.+. .+++|
T Consensus 290 ~~IdaL--~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~----------------------HfvsG 344 (479)
T KOG0299|consen 290 LGIDAL--SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE----------------------HFVSG 344 (479)
T ss_pred eeechh--cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc----------------------ceeec
Confidence 998753 3335566666999999999943 4444556666666666665544 49999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCC----------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 643 (1102)
+.+|.|.+|++...+++.+.....+ ..+|++++..|...++++|+.+|.|++|-+.++.+.+.
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 9999999999999998877653221 12788999999999999999999999999988854333
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=7.2e-27 Score=264.06 Aligned_cols=245 Identities=19% Similarity=0.324 Sum_probs=213.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+-.|...+.|..|+ ++. +.+|+.|.+|++||..++..+.. .+.||.+.|++++|..-+.
T Consensus 204 ~~~~~~~~~~~q~~-~~~--~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~ 262 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH-DGF--FKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGD 262 (537)
T ss_pred cccCcchhhhheee-cCe--EEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCC
Confidence 33478899999999 443 99999999999999999988773 3899999999999998899
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
+|++|+.|.+++|||..+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence 99999999999999999999877 58899999999997543 688999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
++... +.++++|+.|++|++||+.+.+++..+.+|...|.++.+... +.+++|+
T Consensus 336 ~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----------------------~~~~Sgs 389 (537)
T KOG0274|consen 336 CVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----------------------NRLLSGS 389 (537)
T ss_pred EEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----------------------ceEEeee
Confidence 99863 469999999999999999999999999999999988876553 3599999
Q ss_pred CCCeEEEEECCCc-ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311 582 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645 (1102)
Q Consensus 582 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 645 (1102)
.|++|++||+.+. +++.++.+|.. .+.. +...+++|++++.|++|++||..++ ...+.+
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCcc--cccc--cccccceeEeccccccEEEeecccC-ceeeee
Confidence 9999999999999 89999987755 3433 3447789999999999999998887 444444
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3e-27 Score=267.95 Aligned_cols=304 Identities=17% Similarity=0.250 Sum_probs=240.7
Q ss_pred cccceEEEEEccCCceEEEee--cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 738 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
+...|.++..+|+|..+++++ .|+.++||+...-.. ....++..-...+ .....|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l---~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHL---CTMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhh---eeeccccCceeEEEEC
Confidence 455689999999999999999 799999998643110 0011222101111 1123499999999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCC------------------CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311 816 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 876 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 876 (1102)
+||++||+|+ |+.|.||+... ++++..+.+|.+.|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 78899999762 236678899999999999999 999999999999999999
Q ss_pred eecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311 877 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 877 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 956 (1102)
..+.+++..+.+|.+.|..+.|.|-|+||||-+.|++|+||++..... ...+..+-.+.........+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeec
Confidence 999999999999999999999999999999999999999999765332 122333333333445678999999999999
Q ss_pred E--EeC---CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC-----Cc------------EEEEEeCCCeEEEEEcCC
Q 001311 957 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQ------------LVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 957 ~--~~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd-----~~------------~l~s~s~Dg~I~vwd~~~ 1014 (1102)
+ +.+ ..+.|.+-.+.+.-..+. ||.+++.+++|+|- .+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 8 333 378898888877777666 89999999999981 11 578999999999999988
Q ss_pred ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1015 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1015 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.+++..+. ... + -..+.++|+| ||..|+++|.||+|.+..+++++
T Consensus 314 ~RPl~vi~--~lf-----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH--NLF-----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh--hhh-----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 87775433 111 1 3345999999 79999999999999999998876
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.4e-27 Score=240.79 Aligned_cols=286 Identities=17% Similarity=0.269 Sum_probs=234.9
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
..+.|.+++|+|...+=++....-.+.+|+..+ ...... +. .....+.++.|..|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhh-HH--hhccceeEEEeecC
Confidence 457899999999766545555555666665421 111110 11 14677999999999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeE
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 896 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1102)
|+++|+|. .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|.+.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778899999999999999999999999999999999999999988877899999999999
Q ss_pred EEecCC-CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEee
Q 001311 897 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 975 (1102)
Q Consensus 897 ~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~ 975 (1102)
+|+|-. ..++|||.||+|++||+.... ........| .+|..+.|-|.|..++++....|+|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999875 478999999999999998743 223333333 37999999999999999999999999999766554
Q ss_pred eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311 976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
.... .|...|+|+++..|+..|++|+.|+.|+|||+.+.+.+..+. .+.. |. +++-+| |++.++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence 4332 489999999999999999999999999999999999998887 4444 44 888889 568999999
Q ss_pred cCCcEEEEeccCCC
Q 001311 1056 SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1056 ~Dg~v~vW~~~~~~ 1069 (1102)
.||.+.+=+...++
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999888665544
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=261.10 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=207.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe---------------------------------------
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL--------------------------------------- 384 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~--------------------------------------- 384 (1102)
.|.+.|+++.||+||+| ||+|+.|+.|+||.+...+....
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 69999999999999997 99999999999999876211100
Q ss_pred --eeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEc
Q 001311 385 --RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 462 (1102)
Q Consensus 385 --~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s 462 (1102)
....+.+..-.-.+.+...+.||.+.|..|+||.++ +|++++.|.+|++|++...++++ ...|.+-|+||+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 000000111111122334688999999999999765 89999999999999999998887 44699999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC
Q 001311 463 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 542 (1102)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 542 (1102)
|-+.. ++++|+-|+.||||++...+.+.-..-+ .-|+++||. ++|+..+.|+.+|.+++|+....+.......+
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-- 492 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-- 492 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence 97776 8999999999999999888776655544 779999984 56799999999999999998765544322111
Q ss_pred eeeEEEEccCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEE
Q 001311 543 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 621 (1102)
Q Consensus 543 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 621 (1102)
-.+.+-. ....|+.+.+.|.. ..+++.+.|..|||||.++..++..+++......-....|+.||++|
T Consensus 493 --------~~~~Kk~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 493 --------LHNKKKK---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred --------eccCccc---cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 1111100 11145555554432 35888899999999999999999999877766666788999999999
Q ss_pred EEEECCCcEEEEEccCC
Q 001311 622 AVSTNDNGIKILATSDG 638 (1102)
Q Consensus 622 ~~~~~dg~i~iwd~~~~ 638 (1102)
+++++|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=218.42 Aligned_cols=279 Identities=16% Similarity=0.214 Sum_probs=228.0
Q ss_pred cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
..+.+|...|.+++|+.||..||+|+.|+++.||+++..+.. ......+|.+.|-.++|.|.... .+++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 357789999999999999999999999999999999987433 33457899999999999998776 7999999999999
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
||+++++++.......+.+. ++| +++|.+++.++.|..|.+.|.++.+.....+.. .
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~------------------- 148 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-F------------------- 148 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhccc-c-------------------
Confidence 99999999999887777776 455 466789999999999999999875544332211 1
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 641 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 641 (1102)
.+.-++|+.++++++.....|.|.|.....-+++..++.|. ....|+.|+|+|+++|+|+.|-.+.+||+... .+
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC 223 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-IC 223 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hh
Confidence 23334555555677777778999999999999999998775 46889999999999999999999999997543 11
Q ss_pred eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311 642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 721 (1102)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 721 (1102)
.+.+.
T Consensus 224 ~R~is--------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 224 ERCIS--------------------------------------------------------------------------- 228 (313)
T ss_pred heeec---------------------------------------------------------------------------
Confidence 11110
Q ss_pred CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311 722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 801 (1102)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 801 (1102)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC
Q 001311 802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 869 (1102)
Q Consensus 802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 869 (1102)
.+.-+|+.+.||.||++||+++ |..|-|-++++|..+..++ +.++...++|+| ...+||.+++|
T Consensus 229 --RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 229 --RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred --cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 0566788888999999999998 8889999999999988887 788899999999 88999988866
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-26 Score=218.91 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=197.4
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
+.+.+|..+++.+.|+.+|. ||.++++|.++.||-..+|+.+.. +.||.+.|+|+..+.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44668999999999999999 699999999999999999999884 8999999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-----cCCCcEEEEeCC-------CC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-----GDDKTIKVWDAT-------NG 487 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-----~~d~~i~vWd~~-------~~ 487 (1102)
.++|++|+.|.++++||+++|+++... .-..+|..+.|+.+|.. ++.. +..+.|.++|++ +.
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988643 24678999999999994 3333 234679999998 45
Q ss_pred eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
++...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+++++|.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~------------- 202 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR------------- 202 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-------------
Confidence 667788888899999888554 4799999999999999999875544 335566666666666665
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
.++++++.|.+-++||..+-..+.++.... +|++.+++|-...++.|+.
T Consensus 203 --------T~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 203 --------TYFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred --------ceEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCC
Confidence 589999999999999999999999887543 5999999998877777764
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-27 Score=258.88 Aligned_cols=274 Identities=15% Similarity=0.241 Sum_probs=213.2
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeecccccc---------------CCCCcc---------cccc---------
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGKA---------TASV--------- 783 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~---------~~~~--------- 783 (1102)
.|.+.|.++.||+||++|+++|.|+.|+||.+..... ...+.. ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876210 000000 0000
Q ss_pred -cceeccCCCccc---cccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecC
Q 001311 784 -APQLWQPPSGIM---MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 858 (1102)
Q Consensus 784 -~~~~w~~~~~~~---~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~ 858 (1102)
...+.+...... ....+ .||...|..+.||.++ +|++++ |.+|++|++...+|++.|. |..-||||+|+|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 000111111100 11112 3599999999999876 677777 9999999999999999998 9999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 938 (1102)
Q Consensus 859 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 938 (1102)
|.+|+++|+-||.||||++...+.+.-.. -..-|++++|.|||++.+.|+.+|.+++|+....+.....-+....+...
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 99999999999999999998776554433 34789999999999999999999999999999877666555555555544
Q ss_pred CCCCCcEEEEccCC--cEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 939 TAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 939 ~~~~v~~~~~spdg--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
....|+.+.|.|.. +.|+++.|..|+|||..+...+..+........-....|+.||++|+++++|..|+||+.+..
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 44579999999754 478889999999999988888877763223445567789999999999999999999998543
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-25 Score=217.12 Aligned_cols=288 Identities=21% Similarity=0.317 Sum_probs=226.6
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--CCcEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIK 480 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~ 480 (1102)
.+..-.+.|.++.|+++|.+|++++.|.+++|||..+++.++ ++..+.-.|..++|..... .++.++. |.+||
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceE
Confidence 455567899999999999999999999999999999998776 4556777899999998888 4555554 88999
Q ss_pred EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311 481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 560 (1102)
Q Consensus 481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 560 (1102)
.-++.+.+.++.|.||...|++++.+|.+ +.+++++.|++|++||++..++...+...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------------------- 141 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-------------------- 141 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecC--------------------
Confidence 99999999999999999999999986654 68999999999999999976665443322
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc--ceEEEEcCC-CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
.-.+++|+|.|-.+|++.....|++||++.- .+..++... ......+.+.|||||++|+.++..+.+++.|.-+
T Consensus 142 ---~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 142 ---GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred ---CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 2234677777788888888779999999863 344444433 3345678999999999999999999999999877
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
| .....+.++.
T Consensus 219 G-~~~~tfs~~~-------------------------------------------------------------------- 229 (311)
T KOG1446|consen 219 G-TVKSTFSGYP-------------------------------------------------------------------- 229 (311)
T ss_pred C-cEeeeEeecc--------------------------------------------------------------------
Confidence 7 2222221110
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 797 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1102)
+
T Consensus 230 --------------------------------~----------------------------------------------- 230 (311)
T KOG1446|consen 230 --------------------------------N----------------------------------------------- 230 (311)
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 798 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 798 ~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
...-....+|+||++++++|+ ||+|.+|+++++..+..+++ +.+.+.++.|+| .-.+++++ +..+-+|
T Consensus 231 -------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 231 -------AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW 300 (311)
T ss_pred -------CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence 011114567889999999998 79999999999999999988 688999999999 55555554 5668888
Q ss_pred Eee
Q 001311 876 NVR 878 (1102)
Q Consensus 876 d~~ 878 (1102)
=..
T Consensus 301 ~p~ 303 (311)
T KOG1446|consen 301 LPD 303 (311)
T ss_pred ecc
Confidence 654
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=241.21 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=234.7
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ ...+.+|.|-.++|+.+.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 477899999999999999999999999999999998876 334456888889999999999999 68999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
++.+.+...++.||++.|+++.|.... ..+++|+.|.+|+.||+....+..++-. ...+..|..+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence 999999999999999999999885443 3499999999999999988655543221 2222222221
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
...+++|-.|+.|++||.++..+......++ .|+++..++++..|.+++.|.++.+.|+++. ...
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 1247778889999999999999999988765 4999999999999999999999999998765 222
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
..+.
T Consensus 377 ~~~s---------------------------------------------------------------------------- 380 (459)
T KOG0288|consen 377 QTFS---------------------------------------------------------------------------- 380 (459)
T ss_pred EEee----------------------------------------------------------------------------
Confidence 2111
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
..|..
T Consensus 381 --------------------------A~g~k------------------------------------------------- 385 (459)
T KOG0288|consen 381 --------------------------AEGFK------------------------------------------------- 385 (459)
T ss_pred --------------------------ccccc-------------------------------------------------
Confidence 11100
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
.....+.++|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 122367789999999999999 99999999999999888776554 499999999 89999999999999999
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=257.13 Aligned_cols=287 Identities=18% Similarity=0.275 Sum_probs=238.7
Q ss_pred CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311 406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 485 (1102)
Q Consensus 406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~ 485 (1102)
.|...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|.+++|..-+. ++++|+.|.+++|||+.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 467789999998 77899999999999999999886653 3889999999999987455 79999999999999999
Q ss_pred CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
+|+|.+++.+|...|.++.. ...++++|+.|.+|++|++.++..+..+.+|...|.++...
T Consensus 280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 99999999999999998874 22578999999999999999988888888888888777765
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 645 (1102)
+.++++|+.|++|++||+.+++++..+.+|.+ .|.++.+... ..+++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 24799999999999999999999999998654 8989887665 899999999999999998774333333
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCC
Q 001311 646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 725 (1102)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 725 (1102)
.+|.
T Consensus 410 ~~h~---------------------------------------------------------------------------- 413 (537)
T KOG0274|consen 410 QGHT---------------------------------------------------------------------------- 413 (537)
T ss_pred cCCc----------------------------------------------------------------------------
Confidence 3221
Q ss_pred CccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC
Q 001311 726 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 805 (1102)
Q Consensus 726 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 805 (1102)
T Consensus 414 -------------------------------------------------------------------------------- 413 (537)
T KOG0274|consen 414 -------------------------------------------------------------------------------- 413 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
.-+..+ ...+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||.+++||+.++++.
T Consensus 414 -~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 414 -SLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred -cccccc--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 111111 12456788887 99999999999999999998 67888888876 347888999999999999999988
Q ss_pred eeecccc
Q 001311 884 SKLKGHS 890 (1102)
Q Consensus 884 ~~l~~h~ 890 (1102)
+.+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774443
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=238.01 Aligned_cols=248 Identities=21% Similarity=0.256 Sum_probs=198.4
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
....+.|++++|||...+=+|+.+. -.+.|++..+..... .+..-...|.++.|-.||++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeE
Confidence 3456899999999966543444432 789999988766554 24555678999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
||+|+..|.|+|||.++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+...+..+.+|++.|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977644444 48899999999999999887 8999999999999999999987799999999999
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
.+|++. ++.+++|||.||.|++||++.......--.|+.+|..+.+.|.|. .+++++
T Consensus 159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg- 215 (487)
T KOG0310|consen 159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG- 215 (487)
T ss_pred eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-
Confidence 999764 447999999999999999998754333344666677777666654 566655
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.+.|++||+.+|........ .|...|+|+.+..++..|++++-|+.+++||+.+-
T Consensus 216 Gn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 45899999986654433332 13447999999999999999999999999996443
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=219.54 Aligned_cols=286 Identities=17% Similarity=0.252 Sum_probs=223.6
Q ss_pred eEEEEec--CCCeEEEEEe-----cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCC
Q 001311 350 MSMDFHP--VQQTLLLVGT-----NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 421 (1102)
Q Consensus 350 ~~v~~sp--dg~~llasg~-----~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 421 (1102)
.++.||| +++..+|+++ ..|++.|-++..++.+.. ++-+ .-.+.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCcc
Confidence 5788888 4553344443 257899999975544432 2222 2356899999999 456
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
.+++++.||+++|||+.- .-.++..++.|...|.++.|++-.++ .+++++-|++|++|+...++.++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 33456678999999999999998777 677789999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
...|++.. .++++++|.|+++++||++..+....+..|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 99998754 47999999999999999998877777777777777777665544 5789999
Q ss_pred CCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311 582 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 659 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1102)
.|+.|++||++.-+ ++..+.+| .-.|+.+.||| ....|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 99999999998754 45666555 44799999999 567899999999999999987766677776666543311
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 718 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 718 (1102)
+-.. .+..++++.+.|..+.+|+
T Consensus 285 -----------------------------------Dws~-~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 285 -----------------------------------DWSL-FDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -----------------------------------cccc-ccCceeeecccccceeeec
Confidence 1111 2578899999999999997
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.7e-26 Score=219.64 Aligned_cols=247 Identities=17% Similarity=0.207 Sum_probs=196.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC-eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
...+.|.+++|||....+++.|+.|++||+|+++.. .... +....|.++|.+++|+.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 367899999999977778889999999999999863 3221 256789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
+++|+.|+.+++||+.+++... +..|.++|.++.|-+....-.|+|||.|++|++||++...++.++. -.+.+++
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 9999999999999999996543 7789999999999887665589999999999999999999998887 5567777
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+..- ..+++.+..++.|.+++++++...+.... . .-+-.+.+++...+....+.|+-
T Consensus 162 ~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~--S-----------------pLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 162 ADVL----YPMAVVATAERHIAVYNLENPPTEFKRIE--S-----------------PLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred hhcc----CceeEEEecCCcEEEEEcCCCcchhhhhc--C-----------------cccceeeEEEEEecCCceEeeee
Confidence 7542 25889999999999999986544332111 0 01124455555555566799999
Q ss_pred CCeEEEEECCCc--ceEEEEcCCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 583 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 583 dg~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
+|.+-|..++.+ +.-.+++.|.. .-.|++++|+|.-..|++.+.||++.+||-.
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 999999999886 44445555542 2357889999998999999999999999954
No 90
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=252.13 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=201.9
Q ss_pred ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-C
Q 001311 739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 817 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d 817 (1102)
-..|.....++++..+++++.+.....|+...+. ..++....|+.........+|...|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3455556677787778888888888888753211 12233334443321111234999999999999 8
Q ss_pred CCeEEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc
Q 001311 818 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 889 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 889 (1102)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++++|++|+.|+.|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999999 999999999764 3467789999999999999944579999999999999999999999999999
Q ss_pred cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E----eCCeEE
Q 001311 890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 964 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~----~d~~i~ 964 (1102)
...|.+++|+|+|.+|++++.|++|+|||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998653 222333332 13356788998888776 3 368999
Q ss_pred EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311 965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++++....
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 99998754322221112345677778999999999887 59999999999998876654
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.9e-26 Score=261.43 Aligned_cols=280 Identities=20% Similarity=0.305 Sum_probs=225.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
+...|.++..+|||.. +|||+ .|+.++||+.+.--.. ...++. ..+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~---~l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNE---NLPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhc---ccchhheeeccccCceeEEEECCCCCe
Confidence 4567999999999996 99999 8999999997531100 000111 123334457799999999999999999
Q ss_pred EEEEECCCeEEEEEccC----------C-----ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311 423 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 487 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~ 487 (1102)
||+|+.|+.|.||+... | +..+....+.+|...|..++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 0 11235567999999999999999999 8999999999999999999
Q ss_pred eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC------CCeeeEEEEccCCc-------
Q 001311 488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGT------- 554 (1102)
Q Consensus 488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~------- 554 (1102)
+.+.++.+|.+.|..+.| ++-|++|++-+.|++|++|++.+-+....+..+ ...+..+.|+|||.
T Consensus 162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999998 667799999999999999997765555554443 33678899999998
Q ss_pred -------------------eeeeccccCceeEEEEcCC-------------CC----EEEEEeCCCeEEEEECCCcceEE
Q 001311 555 -------------------RTYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT 598 (1102)
Q Consensus 555 -------------------~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 598 (1102)
..+.||+. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 33556666 8899999873 11 56778999999999987777765
Q ss_pred EEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 599 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 599 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
....-. ...|..++|+|||..|++++.||+|.++.....
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543221 236899999999999999999999999987653
No 92
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=251.11 Aligned_cols=263 Identities=13% Similarity=0.129 Sum_probs=198.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 423 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 423 (1102)
|-..|....+++|+.. +++++.+..+..|+...+..+.. .-..+..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4567778888999775 67777778888998766543221 1111121222235789999999999999 89999
Q ss_pred EEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 424 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
|+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1234468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|... ....+.|.+++..+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~--------------------~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA--------------------KSQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC--------------------cceEEEEcCCCCeEEE
Confidence 99999864 5689999999999999999987766555544332 2223344455556666
Q ss_pred Ee----CCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311 580 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 638 (1102)
Q Consensus 580 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 638 (1102)
++ .|+.|++||+++.. .+.....+ ....+....|++++.+|++++ .|+.|++||+.++
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 54 48999999998754 33333322 222345567899999999887 5999999999887
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-25 Score=216.32 Aligned_cols=268 Identities=16% Similarity=0.263 Sum_probs=217.0
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC--CCcEEEEEeecce
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 881 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~ 881 (1102)
....|.++.|+.+|.++++++ |.++++||..++++++++..+.-.+..+.|.. ..+.+..++. |.+|+..++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 467899999999999999988 78999999999999999998888899999987 5555655665 8899999999999
Q ss_pred eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311 882 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 961 (1102)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~ 961 (1102)
.++.+.||...|++|+.+|-+..+++++.|++|++||++..+.+.. +... .-..++|+|+|-++|++.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~--------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS--------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC--------CCcceeECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999996554322 1111 22568999999999997444
Q ss_pred -eEEEEEcCCc--eEeeeeccC-CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCccc
Q 001311 962 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1037 (1102)
Q Consensus 962 -~i~iwd~~~~--~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 1037 (1102)
.|++||++.- ....++... +-....+.|.|||||++|+.++..+.+++.|.-+|.....+. ++....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 9999999864 344444433 346789999999999999999999999999999999888887 33333345
Q ss_pred ceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCCCCCCCCCCCCCCCCCC
Q 001311 1038 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPV 1092 (1102)
Q Consensus 1038 ~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1102)
+++.+|+| |++++++|+.||+|.+|+++++........| .++..+-+...|..
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRY 287 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCce
Confidence 67899999 7999999999999999999999844333333 44444444444443
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=218.28 Aligned_cols=252 Identities=13% Similarity=0.257 Sum_probs=210.7
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
....+.-.+.+..|+|++.....+++++.||+++|||...... +...++.|..+|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEecccc
Confidence 4445556789999999999888899999999999999543221 2225889999999999999
Q ss_pred -CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 419 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 419 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
+++.+++++.|++|++|+..-+..+. ++.||...|...+|+|.... ++++++.|+++++||++.......+..|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEecc
Confidence 77788889999999999998876555 69999999999999998777 89999999999999999755555588999
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 576 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 576 (1102)
..|.++.|+.. +..++++|+.|+.|+.||++..+ .+.++.+|+-.|..+.|+|... ..
T Consensus 191 ~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~l 249 (311)
T KOG0277|consen 191 SEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SL 249 (311)
T ss_pred ceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hH
Confidence 99999999754 44799999999999999999854 4567888888899999988765 56
Q ss_pred EEEEeCCCeEEEEECCCc-ceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEc
Q 001311 577 FLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 577 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 635 (1102)
|++++.|-++||||...+ ..+.+...| +.-+..+.|++ ++.++|+++.|+.++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 899999999999999844 345555544 34678889988 7889999999999999984
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=222.00 Aligned_cols=248 Identities=13% Similarity=0.210 Sum_probs=201.8
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
.|.+.|..+.|.|....|++++.|+++++||+........ ...+ ....+|.++.|.|
T Consensus 170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------------------~K~~---qd~~~vrsiSfHP 226 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------------------FKVF---QDTEPVRSISFHP 226 (430)
T ss_pred hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------------------HHHh---hccceeeeEeecC
Confidence 3889999999999999999999999999999854211000 0001 1467899999999
Q ss_pred CCCeEEEEeC-CeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-cccc-
Q 001311 817 NDSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHS- 890 (1102)
Q Consensus 817 d~~~las~sd-g~I~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~- 890 (1102)
.|.+|++|.| .++++||+++.++...- .+|.+.|+++.+++ .+++.++|+.||.|++||-.+++|+.++ .+|.
T Consensus 227 sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 9999999995 78999999998886553 46889999999999 9999999999999999999999999888 4565
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEc
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 968 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~ 968 (1102)
..|.+..|..+|+++.+.|.|..+++|++.+++....-.-.-..|.. .--+...|.....|++.- ..+.++-||.
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch---hhhhhhhhcCccceEEccccccCceeeccc
Confidence 46899999999999999999999999999997653322111111111 122566788888887774 4578999999
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
+++..+..+.. +|.+.+..+.-||.+.-+++|+.|..+|+|--
T Consensus 383 Rtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 383 RTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 99988877765 89999999999999999999999999999963
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=245.56 Aligned_cols=253 Identities=19% Similarity=0.263 Sum_probs=205.7
Q ss_pred CCCCee---EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 345 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 345 h~~~v~---~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
|...|. ++..++.+...|.||+.||.|++|++....... +.++ ...+..|.+.|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~-~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPY-IASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccch-hhhhhhhHhHHhhHHhhcCCC
Confidence 344444 455554443359999999999999986543321 1111 124788999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE-cCCCCeeEEEEecCCCcEEEEeCCCCe--eeE-------
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQY------- 491 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~d~~~~~l~s~~~d~~i~vWd~~~~~--~~~------- 491 (1102)
.|+++|.|-+|++|+...+. ...+.++..|.+-|.|++. .++.. +++|||-|+.|.+||+.+|. .+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 1233368889999999999 56655 89999999999999999883 232
Q ss_pred -Eee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 492 -IFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 492 -~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
.+. |+...|++++. .++|..|++|+..+.+++||.++.+.+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 223 78889999986 45667999999999999999999999988888887777777666664
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.+++++.||+|++||+...+++.++..|.. .|.++..+|+-..+++|+.||.|..-|+++.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 699999999999999999999999988865 6999999999999999999999999888775
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8.4e-26 Score=233.60 Aligned_cols=221 Identities=20% Similarity=0.298 Sum_probs=165.8
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce-eeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~-~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1102)
.+.+|...|.++++.|.|.+|++|+.|.+|++||+..-.. ++....+. .....|.++.|++.|.++++++| ....+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqak 239 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAK 239 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--Cccee
Confidence 3789999999999999999999999999999999975332 11111222 23457999999999997555554 45789
Q ss_pred EEeCCCCeeeEEe-------------ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeE
Q 001311 481 VWDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTT 546 (1102)
Q Consensus 481 vWd~~~~~~~~~~-------------~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~ 546 (1102)
|+| +.|..+..+ +||...+++.||++... ..+++++.||++|+||+...+... .+....
T Consensus 240 l~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~----- 312 (641)
T KOG0772|consen 240 LLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP----- 312 (641)
T ss_pred EEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeecc-----
Confidence 999 666554433 58999999999998665 579999999999999998754332 221110
Q ss_pred EEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce---EEEEcCCCCCCCcCeEEEcCCCCEEEE
Q 001311 547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAV 623 (1102)
Q Consensus 547 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~ 623 (1102)
.+...-.++.++|++++++|++|+.||.|.+|+..+... ...-..|.....|+|+.||+||++|++
T Consensus 313 -----------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 313 -----------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred -----------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 111223677788888999999999999999999754321 222344554458999999999999999
Q ss_pred EECCCcEEEEEccCCcccee
Q 001311 624 STNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 624 ~~~dg~i~iwd~~~~~~~~~ 643 (1102)
-+.|+++++||++..++++.
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred ccCCCceeeeeccccccchh
Confidence 99999999999987755443
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=232.80 Aligned_cols=296 Identities=16% Similarity=0.236 Sum_probs=224.2
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
.+|...|.++++.|.|.++++|+-|..|++||+..-+.+. ........ .....|.++.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P--~E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQP--CETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCc--ccccccceeeec
Confidence 4578889999999999999999999999999974321100 00000111 146679999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCceeee------------ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 881 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~- 881 (1102)
+.|..|++.+ ....+|+|....+.... -+||...++|.+|+|.....+++++.||+++|||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888887 78899999765544332 357888999999999878899999999999999997643
Q ss_pred eeeee-----ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311 882 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 882 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 956 (1102)
.+..+ .+-.-.++.++|++||+++|.|+.||.|.+|+..+..... ...+...|.. ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22333 2344568999999999999999999999999985433221 2223333332 24799999999999999
Q ss_pred E-EeCCeEEEEEcCCce-EeeeeccCCCCCCeeEEEEcCCCcEEEEEeC------CCeEEEEEcCCceeEEEeCCCcccC
Q 001311 957 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1028 (1102)
Q Consensus 957 ~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~~~~ 1028 (1102)
+ +.|+++++||++..+ ++..+..-....+-+.++||||.++|++|+. .|++++||..+.+.+.++.+.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 899999999998754 3333322122456788999999999999874 478999999999999998733
Q ss_pred CCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1029 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1029 ~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
+ ..++.+.|+| .=+.|.+|+.||+++|+--
T Consensus 457 -~-----aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 -T-----ASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred -C-----ceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 1 3345899999 4688999999999997643
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=213.38 Aligned_cols=313 Identities=15% Similarity=0.198 Sum_probs=212.0
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc-----eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 477 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 477 (1102)
.+++|.+.|++++||.||++||+++.|++|+||+++.-. +++... .-+--+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccCC
Confidence 699999999999999999999999999999999987532 122111 1234678999999886 566666667
Q ss_pred cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 478 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 478 ~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
++++|-+...+. ..+.-|.-.+..+.| .. .|.-
T Consensus 156 ~l~vyk~~K~~d-G~~~~~~v~~D~~~f-----------------------~~--------kh~v--------------- 188 (420)
T KOG2096|consen 156 KLCVYKLVKKTD-GSGSHHFVHIDNLEF-----------------------ER--------KHQV--------------- 188 (420)
T ss_pred EEEEEEeeeccc-CCCCccccccccccc-----------------------ch--------hccc---------------
Confidence 788887543221 001101111111111 00 0000
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
.+..+-+..++.++++++.|..|.+|+++ |+.+..+..... .-...+.||+|+++++++..-.|++|.+.-
T Consensus 189 ------~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 189 ------DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred ------ceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 11112222234578889999999999997 888887764433 345689999999999999999999997532
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
+ -.|... ...|++
T Consensus 260 ~------kdG~fq-------------------------------------------------------------ev~rvf 272 (420)
T KOG2096|consen 260 T------KDGTFQ-------------------------------------------------------------EVKRVF 272 (420)
T ss_pred c------cCcchh-------------------------------------------------------------hhhhhh
Confidence 2 111000 112222
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccc-cCCCCcccccccceeccCCCcccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE-RNSSGKATASVAPQLWQPPSGIMM 796 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1102)
.+ .+|...|..++|+++.+++++.+.||.+++||.+-.- ...+.+.+.. |.
T Consensus 273 ~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~-- 324 (420)
T KOG2096|consen 273 SL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS-- 324 (420)
T ss_pred ee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC--
Confidence 22 3499999999999999999999999999999975321 1111111111 11
Q ss_pred ccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 797 TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 797 ~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
..+.. ..+....++++|+|+.||......++++..++++..-++ ..|...|.+++|++ +|+++|+++ |..++++
T Consensus 325 -~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 325 -APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVI 399 (420)
T ss_pred -cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeee
Confidence 01111 233445899999999999999999999999998876665 45888999999999 999999987 7788887
Q ss_pred E
Q 001311 876 N 876 (1102)
Q Consensus 876 d 876 (1102)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 5
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.4e-25 Score=214.27 Aligned_cols=320 Identities=16% Similarity=0.231 Sum_probs=230.2
Q ss_pred EEEEECCCcceEE-----EEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 586 IKFWDMDSVQLLT-----SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 586 i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
..-|+....+..+ .+++| ...|++++|+.||++|++++.|++|++|++.+-. .+.|...
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH--~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~~--------- 126 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGH--KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRCI--------- 126 (420)
T ss_pred hhhhcccCCCcccchhhhhhhcc--CCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhHh---------
Confidence 4445554444333 33444 4589999999999999999999999999987631 1111100
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
.... ..+
T Consensus 127 ---------------------------------------------------------------------R~nv----e~d 133 (420)
T KOG2096|consen 127 ---------------------------------------------------------------------RQNV----EYD 133 (420)
T ss_pred ---------------------------------------------------------------------hccc----cCC
Confidence 0000 123
Q ss_pred ceEEEEEccCCceEEEeec-CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 741 KISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..+.+.|+||-+.++.... ...+++|.+....- |...-. ..-||-. . + ...|.-.+..+-...+++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--~-----f-~~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--E-----F-ERKHQVDIINIGIAGNAK 200 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--c-----c-chhcccceEEEeecCCce
Confidence 5678899999887666554 57899998743211 111100 0111100 0 0 012666777788888999
Q ss_pred eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---c-----eeeeeecccc
Q 001311 820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHS 890 (1102)
Q Consensus 820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~-----~~~~~l~~h~ 890 (1102)
+|++++ |..|.+|+++ |+.+..+......-+..+.|| +|++||+++----|+||.+-- | ..+..|+||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999999 8999999998 888888887777788899999 999999999999999999742 2 2345689999
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC---CCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR---TPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 967 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd 967 (1102)
..|.+++||++.+.++|.+.||+++|||++-.-.....+.....+. ....+....+.++|+|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 9999999999999999999999999999874322111111111110 0111234589999999999999999999999
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
.++|+....+. ..|...|.+++|++||+++++++ |..++|..
T Consensus 359 se~g~~~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 359 SEDGKDYPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cccCccchhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99998877765 47899999999999999999997 88888875
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-25 Score=240.25 Aligned_cols=273 Identities=19% Similarity=0.275 Sum_probs=227.8
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311 351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 430 (1102)
Q Consensus 351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 430 (1102)
-+.|+..+ +||+|.. ..|++|+..+++.... ...+.+.|+++.|+++|.+||+|..+|
T Consensus 182 lldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred HhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence 35677444 3666652 6899999999886542 333478999999999999999999999
Q ss_pred eEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE-eecCCCCeEEEeeeec
Q 001311 431 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHK 508 (1102)
Q Consensus 431 ~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~-~~~h~~~v~~v~~~~~ 508 (1102)
.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-- 310 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-- 310 (484)
T ss_pred eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--
Confidence 99999999877665 4667 99999999998 44 699999999999999998877655 89999999999984
Q ss_pred CCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe--CCCeE
Q 001311 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSI 586 (1102)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i 586 (1102)
.++.++++|+.|+.+.|||....+....+..|...|..++|+|-.. +.||+|+ .|+.|
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRCI 370 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccEE
Confidence 5668999999999999999988899999999999999999998665 5688865 69999
Q ss_pred EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE--ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311 587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 664 (1102)
Q Consensus 587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1102)
++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. ..+..+
T Consensus 371 ~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------- 427 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------- 427 (484)
T ss_pred EEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-------------------
Confidence 999999999998887544 49999999988777664 45678899987664 222222
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311 665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 744 (1102)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 744 (1102)
.+|..+|..
T Consensus 428 -----------------------------------------------------------------------~gH~~RVl~ 436 (484)
T KOG0305|consen 428 -----------------------------------------------------------------------LGHTSRVLY 436 (484)
T ss_pred -----------------------------------------------------------------------cCCcceeEE
Confidence 348889999
Q ss_pred EEEccCCceEEEeecCceEEeeec
Q 001311 745 LIFTNSGNAILALASNAIHLLWKW 768 (1102)
Q Consensus 745 ~~~s~~g~~l~~~~~dg~i~iw~~ 768 (1102)
++++|||..+++++.|.++++|++
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccc
Confidence 999999999999999999999986
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=217.18 Aligned_cols=249 Identities=16% Similarity=0.320 Sum_probs=211.0
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
...+|++.|+.|+...... ++.+++.|.+.+||.+++|.++.. +.||.+.|+++.|++.+
T Consensus 143 e~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~ 202 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSG 202 (481)
T ss_pred hhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEecccc
Confidence 3557999999999887766 799999999999999999999984 88999999999999999
Q ss_pred CeEEEEECCCeEEEEEcc------C------------------------------Ccee-eeEEEeeccccCEEEEEEcC
Q 001311 421 SLFGVAYSRHIVQIYSYH------G------------------------------GDEV-RQHLEIDAHVGGVNDIAFSH 463 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~------~------------------------------~~~~-~~~~~l~~h~~~V~~v~~s~ 463 (1102)
.++++++.|++..||... . +..+ .++..|.+|.+.|.+..|..
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 999999999999999621 0 0011 23556899999999999999
Q ss_pred CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCC
Q 001311 464 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGR 542 (1102)
Q Consensus 464 d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~ 542 (1102)
.|+ -+++++.|.+..+||+++|+.+..+.||....+.++-++. ..++++.+.|.+.++||++.. .....|.+|..
T Consensus 283 gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 283 GGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD 358 (481)
T ss_pred Ccc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence 999 5999999999999999999999999999999998887554 478999999999999999843 33456788888
Q ss_pred eeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcCCCCEE
Q 001311 543 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLL 621 (1102)
Q Consensus 543 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l 621 (1102)
.|++..|..+.+ +++|++|.+|++||+++.+ .+.++.... .++.++.+..+..+
T Consensus 359 tVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 359 TVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPII 413 (481)
T ss_pred ceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceE
Confidence 888888877765 9999999999999998754 455655433 58889999988899
Q ss_pred EEEECCCcEEEEEccCC
Q 001311 622 AVSTNDNGIKILATSDG 638 (1102)
Q Consensus 622 ~~~~~dg~i~iwd~~~~ 638 (1102)
+.--.+..|++||++..
T Consensus 414 AiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLNGN 430 (481)
T ss_pred EeccCCceEEEEecCCC
Confidence 99888999999998654
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8e-25 Score=213.43 Aligned_cols=239 Identities=21% Similarity=0.227 Sum_probs=201.9
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc--EEEEEeCCCcEEEEEeecc
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~~ 880 (1102)
.|...|+++++ ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ +.. .|++|++||.|.+|+..+.
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 48999999998 678999999 99999999999999999999999999999998 553 8999999999999999999
Q ss_pred eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC
Q 001311 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 960 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d 960 (1102)
+++..+++|.+.|+.|+.+|.+++-++.+.|+.++.||+-.|+......+.. ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999877533222221 2356999999999999888
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceE
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
..|-||.+.+......+.. ...+.++.|- ++..|++|.+|+.|++||.+++...+.+. +|... |- +
T Consensus 189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--~ 254 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--D 254 (362)
T ss_pred cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--e
Confidence 8999999998877666542 3467777776 66788999999999999999988877666 44333 55 4
Q ss_pred EE-ecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1041 IA-AHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1041 v~-f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
+. |...++.+|+|+|+||.|+|||+...
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 44 33336789999999999999999877
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-26 Score=241.53 Aligned_cols=367 Identities=16% Similarity=0.196 Sum_probs=267.3
Q ss_pred EEEEc-cCCCeEEEEECCCeEEEEEccCCcee---eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-
Q 001311 413 RVIWS-PDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG- 487 (1102)
Q Consensus 413 ~l~~s-pdg~~las~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~- 487 (1102)
.+..+ |+++||.+||.||.|++|++...... .....+..|.+.|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 37788999999999999998754331 12346888999999999999998 6999999999999999988
Q ss_pred -eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 488 -AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 488 -~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
-|..++..|...|.|++.- ..+..++++||.|+.|.+||+.++.....
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~------------------------------ 155 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV------------------------------ 155 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh------------------------------
Confidence 6788899999999999873 45557999999999999999987432100
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
++. ..+..=++.. +....|.+++..+.|..+++|+..+.+++||.++..+.++ ++
T Consensus 156 -------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-Lr 210 (735)
T KOG0308|consen 156 -------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-LR 210 (735)
T ss_pred -------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccccccceee-ee
Confidence 000 0011111111 2344688899999999999999999999999877732221 11
Q ss_pred cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCC
Q 001311 647 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 726 (1102)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~ 726 (1102)
T Consensus 211 -------------------------------------------------------------------------------- 210 (735)
T KOG0308|consen 211 -------------------------------------------------------------------------------- 210 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311 727 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 806 (1102)
Q Consensus 727 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 806 (1102)
+|.
T Consensus 211 -----------------------------------------------------------------------------GHT 213 (735)
T KOG0308|consen 211 -----------------------------------------------------------------------------GHT 213 (735)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 266
Q ss_pred CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
..|.++..+.||..+++++ ||+|++||+...+|+.++..|...|.++..+| +-..+.+|+.||.|+.=|+.+......
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tl 292 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTL 292 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheE
Confidence 6677777888888888887 89999999999999999999999999999999 899999999999999999988432222
Q ss_pred eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001311 886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 965 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~i 965 (1102)
+-....+|..+..+.+.+-+-+++.|+.|+-|..+. ...+++.|.+...+.+....+
T Consensus 293 ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 293 ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred eecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCcccccCCCcc
Confidence 222455677777775555556778899999997654 123445555544444444444
Q ss_pred EEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 966 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 966 wd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
++... ...... +| ...|...++-.|.++++|-...|.+.+||+-.++.+..+.
T Consensus 350 ~~~~~-tp~~vi--~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 350 CDLTN-TPDSVI--PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ccccC-CCceec--cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 44321 010111 12 4456666777899999999999999999998776665443
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.1e-25 Score=238.06 Aligned_cols=238 Identities=17% Similarity=0.287 Sum_probs=203.9
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEE-EEEcc-C
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSP-D 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d 419 (1102)
+.+|+..|..+++.++.. ++++|.||++++|+-..++-+.. ..+.+|.+.|.+ +++-+ |
T Consensus 10 l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICYAESD 70 (745)
T ss_pred eccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccceecccc
Confidence 446999999999888873 99999999999999766554432 246788888888 88886 6
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
+..|++|+.|.+|.+|...+...+. .|.||+..|.|++...++. ++|||.|.+++||- .+++...+.+|+..
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~as 142 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTAS 142 (745)
T ss_pred CcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchh
Confidence 6679999999999999999987554 6999999999999888876 89999999999995 57788889999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|+++...+. +.++|||.|++|++|.- +....++.+|...|+.+++.+++. |++
T Consensus 143 VWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~----------------------flS 195 (745)
T KOG0301|consen 143 VWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH----------------------FLS 195 (745)
T ss_pred eeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------eEe
Confidence 999986433 38999999999999954 677888999999999999988865 999
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
++.||.|+.|++ +|+++..+.+| ...+.+++...++..++++++|++++||+..
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999 77777777655 4579999988899999999999999999864
No 106
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.1e-24 Score=243.37 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=181.4
Q ss_pred EecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC-CCeEEEEECCCeEEEEEccCCce-
Q 001311 365 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 442 (1102)
Q Consensus 365 g~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~vwd~~~~~~- 442 (1102)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5667788888876544333 47899999999999996 89999999999999999986432
Q ss_pred e----eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe
Q 001311 443 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 518 (1102)
Q Consensus 443 ~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s 518 (1102)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+++++.+..+. |...|.+++|+ ++|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws--pdG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN--IKGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC--CCCCEEEEEe
Confidence 1 123357899999999999999874 56899999999999999999888776 66789999985 5668999999
Q ss_pred CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC----eEEEEECCC-
Q 001311 519 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 593 (1102)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 593 (1102)
.|+.|++||++++.....+..|.+.+.... +....++++++++++++.|+ .|+|||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999998877776766655433222 12233456777899887664 799999985
Q ss_pred cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 594 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 594 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++++..+..+.....+......+++.++++|..|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 566666654444333333344557899999999999999999765
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.4e-24 Score=196.88 Aligned_cols=308 Identities=14% Similarity=0.134 Sum_probs=226.7
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
....|.+++|.|.|...+++++.++.+|.....--....+...+.. ...++.. ...-|.+.|.|.+|+|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--------pp~v~~k--r~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--------PPSVLCK--RNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--------CCeEEee--eccccCccEEEEEecCc
Confidence 5568999999999999999999999998765321000000000000 0001111 11228899999999999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecC---CCcEEEEEe-CCCcEEEEEeecceeeeeec
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~-----~~~~~~~~~i~~l~~sp~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~ 887 (1102)
|++|++|+ |.+|++...+...+. .++.-|.+.|..++|-.+ ++.+|++++ .|..|++-|...|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 899988766543322 346778999999999742 466888765 57789999999999999999
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEE
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF 966 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iw 966 (1102)
+|.+.|.++ ++-+|-.+++|+.|.+|++||+.-.......- ..+.+.......|..++..|.|++|+++ .|....+|
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 999999876 34468899999999999999998644322111 1111222223578999999999999997 78899999
Q ss_pred EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311 967 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus 967 d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
|++.++.++.+. .|+..|.++.|||...||++++.|..|++-|+... +..++. ......|... ++.+.|+|+
T Consensus 259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~--~~vv~ehkdk---~i~~rwh~~ 330 (350)
T KOG0641|consen 259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELP--IMVVAEHKDK---AIQCRWHPQ 330 (350)
T ss_pred EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCc--eEEEEeccCc---eEEEEecCc
Confidence 999999999886 78999999999999999999999999999998643 222211 1111233344 446999997
Q ss_pred CCCEEEEEecCCcEEEEecc
Q 001311 1047 EPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1047 d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
| ..+++.+.|.++.+|-++
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 5 678888999999999864
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.8e-25 Score=224.86 Aligned_cols=292 Identities=16% Similarity=0.196 Sum_probs=224.4
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeE--------------EEe-eccccCEEEEEEcCCCCe
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 467 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~d~~~ 467 (1102)
.+..|.-+|.|++++||+++.++++.|++|.=|++.+|+..+.+ ..- .+|...|.+++.++||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 57889999999999999999999999999999999988743111 011 37889999999999999
Q ss_pred eEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEE
Q 001311 468 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 547 (1102)
Q Consensus 468 ~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1102)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++....+.++-+|...|..+
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999985444 579999999999999999888888888888888877
Q ss_pred EEccCCceeeeccccCceeEEEEcCCCCEEEE-EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311 548 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
....-++ +++ |+.|+++++|++.... ...+.++ ...+-|++|-.+ ..+++|+.
T Consensus 293 daL~reR----------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In~-~HfvsGSd 346 (479)
T KOG0299|consen 293 DALSRER----------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIND-EHFVSGSD 346 (479)
T ss_pred chhcccc----------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEecc-cceeeccC
Confidence 7666554 555 5599999999995433 3333334 335788888754 56889999
Q ss_pred CCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccc
Q 001311 627 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 706 (1102)
Q Consensus 627 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 706 (1102)
+|.|.+|++...+.+...-..|.....
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~----------------------------------------------------- 373 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPE----------------------------------------------------- 373 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCC-----------------------------------------------------
Confidence 999999998877333332222211100
Q ss_pred cccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccce
Q 001311 707 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 786 (1102)
Q Consensus 707 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 786 (1102)
.. ...+...|++++..|....+++++.+|.+++|.+..+..
T Consensus 374 ---------------------~~-----~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r------------- 414 (479)
T KOG0299|consen 374 ---------------------LD-----PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR------------- 414 (479)
T ss_pred ---------------------cc-----ccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-------------
Confidence 00 011335789999999999999999999999998743311
Q ss_pred eccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311 787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825 (1102)
Q Consensus 787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s 825 (1102)
....+....-.+.|++++|+++|+++++|-
T Consensus 415 ---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 415 ---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 111111122467799999999999888775
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-25 Score=238.47 Aligned_cols=253 Identities=16% Similarity=0.280 Sum_probs=212.3
Q ss_pred CCccceeecc-CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCC-CCCCeE
Q 001311 335 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVN 412 (1102)
Q Consensus 335 ~~~~~~~~~~-h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~ 412 (1102)
....+..+.. +...|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.+ |...|.
T Consensus 205 ~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg 264 (484)
T KOG0305|consen 205 SSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVG 264 (484)
T ss_pred CCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeE
Confidence 3344444444 3899999999999996 99999999999999988877763 455 999999
Q ss_pred EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..++|++|+. ++++|+.|+.+.|||..+..++..
T Consensus 265 ~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 265 SLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred EEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEE
Confidence 99998 88899999999999999998776543 3889999999999999999 799999999999999988899999
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEe--CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 570 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 570 (1102)
+..|.+.|.+++|+|-.. .+|++|+ .|+.|++||..++..+.... .+..|.++.|++..+
T Consensus 339 ~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k---------------- 400 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK---------------- 400 (484)
T ss_pred EeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC----------------
Confidence 999999999999988766 4788875 59999999999766554433 234455666655554
Q ss_pred cCCCCEEEE--EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 571 DTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 571 ~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.|++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 -----Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 -----ELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -----EEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4554 44688999999999999999887755 7999999999999999999999999997654
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=219.67 Aligned_cols=241 Identities=19% Similarity=0.302 Sum_probs=197.7
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
||...|..+.|+++...+++++.|..|+||....... ... . ..|..+|+.+...|
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------------~~~----~--~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------------PTS----S--RPHEEPVTGLSLHP 313 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeeccccccC-------------------ccc----c--ccccccceeeeecc
Confidence 3667889999999999999999999999998632110 000 1 12899999999999
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 893 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1102)
.|.||++++ |++..+.|++++.++...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 999999999 899999999999887665532 33589999999 99999999999999999999999999999999999
Q ss_pred eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC--
Q 001311 894 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-- 970 (1102)
Q Consensus 894 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~-- 970 (1102)
..|+|+.+|-|||+++.|+.|++||++.-+... .+..... ..+..+.|.+.|++|+.+ .+=+|++++-.+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccc--eeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 999999999999999999999999998754322 2222222 258999999999999995 555666666444
Q ss_pred ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311 971 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
..++..+ ..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 466 W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehh--hhcccccceeeecccceEEeeccchhheEEeec
Confidence 3444444 477889999999999999999999999888764
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=4.7e-25 Score=226.59 Aligned_cols=269 Identities=14% Similarity=0.227 Sum_probs=218.7
Q ss_pred cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
++...+.|.+.|+.+..-|....|+|+++..+.|.|||..+....... .+...+...+.||...=+.|+|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 455567799999999999999999999999999999998764332210 00112223588999988899999
Q ss_pred c-CCCeEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC--CCeee
Q 001311 418 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ 490 (1102)
Q Consensus 418 p-dg~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~--~~~~~ 490 (1102)
+ ..-+|++++.|++|.+||+..... +.....+.+|...|..++|.+-... ++++++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9 566899999999999999986543 5556678999999999999998877 79999999999999999 56667
Q ss_pred EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
....+|.+.|+|+.|++.. +.+|++||.|++|++||+++.. ++..+..|...|..+.|+|...
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e--------------- 329 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE--------------- 329 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence 7888999999999998755 4799999999999999999864 5668888999999999998876
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcceE------------EEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEcc
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLL------------TSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS 636 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~ 636 (1102)
..|++++.|+.+.+||+..-... ..|...+|...|..+.|+|... .+++.+.|+.+.||...
T Consensus 330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 56899999999999999642222 2244455677899999999665 56677889999999875
Q ss_pred C
Q 001311 637 D 637 (1102)
Q Consensus 637 ~ 637 (1102)
.
T Consensus 405 ~ 405 (422)
T KOG0264|consen 405 E 405 (422)
T ss_pred c
Confidence 3
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.1e-24 Score=206.63 Aligned_cols=207 Identities=18% Similarity=0.210 Sum_probs=160.7
Q ss_pred cCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 404 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 404 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
-....+.|.+|+||| ...++++++.|++||+|+++....... +....|.++|.+++|+.||. .+++|+-|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 455678999999999 666677899999999999987422222 34667999999999999998 79999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
|+.++ .+..+..|.++|..+.|....+-..|++||-|++|++||.+....+.++..++. +.++.
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D-------------- 163 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD-------------- 163 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence 99999 456677799999999987766666899999999999999998777766655432 11111
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
-...+++.+..++.|.+|+++++..........-.-.++|++..+|....+.|+-+|.+-|-.+..+
T Consensus 164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 1124577888999999999987654333221112235789999998888899999999988877654
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.5e-24 Score=216.65 Aligned_cols=282 Identities=20% Similarity=0.275 Sum_probs=228.8
Q ss_pred cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC
Q 001311 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 533 (1102)
Q Consensus 454 ~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 533 (1102)
..+.++...+... .+++|+.|..+.++|..+++.+..+.||...|+.+.+++.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence 4678888888745 69999999999999999999999999999999999987655 5899999999999998877666
Q ss_pred eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEE
Q 001311 534 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 613 (1102)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 613 (1102)
......|...|+.+ ..+|.|.||++++.|++..+.|++++..+...........+++.+
T Consensus 296 ~~~~~~h~~~V~~l---------------------s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGL---------------------SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ccccccccccceee---------------------eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 55555555555544 455555699999999999999999999988877554445688999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCC
Q 001311 614 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 693 (1102)
Q Consensus 614 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1102)
|+|||..+.+|+.||.|+|||+.++. ....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~------------------------------------------------- 384 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK------------------------------------------------- 384 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence 99999999999999999999987661 1110
Q ss_pred CCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecccccc
Q 001311 694 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 773 (1102)
Q Consensus 694 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 773 (1102)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCee
Q 001311 774 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAAT 851 (1102)
Q Consensus 774 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~ 851 (1102)
+ .+|.++|..++|+.+|-|+|++. |+.|++||++..+..+++.... .++.
T Consensus 385 --------------------------F--pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 385 --------------------------F--PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred --------------------------C--CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 1 12677777788888888888887 6778888888777666665333 3699
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEee--cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 852 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 852 ~l~~sp~d~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
++.|.+ .|.+|+.++.|=+|++++-. ++.++..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999 89999999888666666633 46788888999999999999999999999999999888764
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=9.2e-24 Score=217.43 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=200.9
Q ss_pred cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
+..+++.|..-|.++++|...++ +.||+. |.|+|||+...... .+...--...-...|..+..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCC--------------CccccccccCcccceeeeEec
Confidence 45678889999999999999997 899887 89999999653211 011111122345689999999
Q ss_pred cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||+
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987643 22223444445678899999999 89999999999999999999999999999
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
+.+.||.+ +.+|..|.+|+.|.+||.||++.+..+..... ...|.++.++|++.++
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF----------------------~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF----------------------SSQIFSLGYCPTGDWL 607 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh----------------------hhhheecccCCCccce
Confidence 99999987 56778999999999999999998766543221 1245556667777899
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+.|-+++.+.+-..... ....+ +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus 608 avGMens~vevlh~skp-~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP-EKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eeecccCcEEEEecCCc-cceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 99999999988876443 33333 334457999999999999999999999999986655
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.3e-25 Score=219.75 Aligned_cols=287 Identities=16% Similarity=0.228 Sum_probs=220.3
Q ss_pred cCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 404 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++. ++..|.+.|..|++.. + .++++|.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999977 889999999999999999987665 5889999999999987 3 48999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
-+.- ..++++.+. ..+..+.-+ ..+..++|||. .|-+||.....++..+.-....+.++.|+|-.+
T Consensus 135 k~~~-~p~~tilg~-s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILGK-SVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeecc-ccccccccc--cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9654 577777643 335555432 22357888874 588899987666666655555555555555544
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
..|++++.|+.|.+||++.+.++..+...-. -+.++|+|.+-.++++++|..++.+|++.....+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence 3466777999999999999998887754433 4679999988889999999999999987664433
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
...
T Consensus 266 ~v~----------------------------------------------------------------------------- 268 (433)
T KOG0268|consen 266 NVH----------------------------------------------------------------------------- 268 (433)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 332
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
.+|...|.++.|+|.|+-+++++-|.+|+||..+.... -.... +
T Consensus 269 -------------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-------------------RdiYh---t- 312 (433)
T KOG0268|consen 269 -------------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-------------------RDIYH---T- 312 (433)
T ss_pred -------------cccceeEEEeccCCCcchhccccccceEEEeecCCCcc-------------------hhhhh---H-
Confidence 23778899999999999999999999999998643210 00000 0
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 840 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~ 840 (1102)
.--..|.|+.||.|.+++++|+ |+.|++|.....+.+
T Consensus 313 -kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 313 -KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred -hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 0123489999999999999999 799999997654433
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=210.42 Aligned_cols=319 Identities=15% Similarity=0.226 Sum_probs=235.2
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311 565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 644 (1102)
|+-++.....+.+.+++.|.+-+||.+++++++..+.+|.+ .|+++.|++.+.++++++.|++-+||...-....-+.
T Consensus 151 iW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~ 228 (481)
T KOG0300|consen 151 IWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN 228 (481)
T ss_pred eeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence 44444444445688899999999999999999999987754 8999999999999999999999999964322110000
Q ss_pred c--ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 645 F--ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 645 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
. .+|... .+. - ..|.
T Consensus 229 ~a~~~hSsE--------------------------------------------------eE~--e-~sDe---------- 245 (481)
T KOG0300|consen 229 NAPSDHSSE--------------------------------------------------EEE--E-HSDE---------- 245 (481)
T ss_pred CCCCCCCch--------------------------------------------------hhh--h-cccc----------
Confidence 0 000000 000 0 0000
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
|. .-..-....|| .+|++ ....+.
T Consensus 246 ---------------~~-~d~d~~~~sD~---------~tiRv------------------------------Pl~~lt- 269 (481)
T KOG0300|consen 246 ---------------HN-RDTDSSEKSDG---------HTIRV------------------------------PLMRLT- 269 (481)
T ss_pred ---------------cc-cccccccccCC---------ceeee------------------------------eeeeee-
Confidence 00 00000000111 11221 111122
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-c
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-D 880 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~ 880 (1102)
+|...|.+..|-..|+.+++++ |.+..+||++++..+..+.+|..+.+.++-+| ..+++++.+.|-+.++||++. -
T Consensus 270 -gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 270 -GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred -ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhc
Confidence 3899999999999999999999 99999999999999999999999999999999 899999999999999999984 2
Q ss_pred eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001311 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H 959 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~ 959 (1102)
..+..|+||.+.|+++.|.-| ..+++|+.|.+|+|||+..... ++..... ..++..++.+..+..++.- .
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt----dS~~NRvavs~g~~iIAiPhD 418 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT----DSPANRVAVSKGHPIIAIPHD 418 (481)
T ss_pred ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec----CCccceeEeecCCceEEeccC
Confidence 456789999999999999866 4789999999999999987443 1221111 1478899999999999885 6
Q ss_pred CCeEEEEEcCCceEeeee--ccCCCCCCeeEEEEcCCCc--EEEEEeCCCeEEEEEcCCc
Q 001311 960 ETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 960 d~~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~spd~~--~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
+..|++||++..+..+.- ...+|...|.|++|..+-- -|++++.|..+.=|++..-
T Consensus 419 NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 419 NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 779999999887765544 3468999999999987643 4889999999999998653
No 117
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.3e-23 Score=238.43 Aligned_cols=243 Identities=14% Similarity=0.182 Sum_probs=177.3
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
+..+.+|.+.|.+++|+|+...+||+|+.|++|+|||+.++..... ........+.+|...|.+++|+|
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----------~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----------EIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------ccccceEEeecCCCcEEEEEECC
Confidence 3445579999999999998433699999999999999986532110 00001114679999999999999
Q ss_pred CCCe-EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 419 DGSL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 419 dg~~-las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
++.. ||+++.|++|+|||+.+++.+. .+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+.++.+|.
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9876 5789999999999999987543 243 567899999999999 78999999999999999999999999999
Q ss_pred CCeEEEeeee---cCCccEEEEEeCCC----eEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 498 APVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 498 ~~v~~v~~~~---~~~~~~l~s~s~dg----~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
+.+.+.++.. .+++.+|++++.|+ +|++||++.... +..+..... . +.+....
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~------------------~~L~p~~ 270 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-S------------------APLIPHY 270 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-c------------------cceEEee
Confidence 8776554332 35667888888774 799999986432 222111110 0 1111122
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 618 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 618 (1102)
..+++.++++|+.|+.|++|++..+. +..+........+.+++|.|+.
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 23446778899999999999998764 4444434444567889999964
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.7e-25 Score=219.42 Aligned_cols=285 Identities=16% Similarity=0.261 Sum_probs=217.7
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 527 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd 527 (1102)
.|.||.++|.|++=.|..-. .++||+.||.|+|||+.+..++.++..|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 37899999999999988622 699999999999999999999999999999999999854 4689999999999998
Q ss_pred cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 607 (1102)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 607 (1102)
+... ...++.+ +..+..+..+..++.++++|+ .|.|||..-..++..+.-. ..
T Consensus 136 ~~~~-p~~tilg----------------------~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG--~D 188 (433)
T KOG0268|consen 136 IDGP-PLHTILG----------------------KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG--AD 188 (433)
T ss_pred ccCC-cceeeec----------------------cccccccccccccccccccCc--eeeecccccCCccceeecC--CC
Confidence 7652 1111111 123333444555567888876 4999999888888888643 45
Q ss_pred CcCeEEEcCC-CCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311 608 ASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 686 (1102)
Q Consensus 608 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1102)
.|.++.|+|- ...|+++..|+.|.+||++.+ .+++.+.
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KVi---------------------------------------- 227 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKVI---------------------------------------- 227 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccC-Cccceee----------------------------------------
Confidence 7999999994 556777779999999999887 3332221
Q ss_pred cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311 687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 766 (1102)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 766 (1102)
-...-..++|+|++-.++++..|..++.|
T Consensus 228 ---------------------------------------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~ 256 (433)
T KOG0268|consen 228 ---------------------------------------------------LTMRTNTICWNPEAFNFVAANEDHNLYTY 256 (433)
T ss_pred ---------------------------------------------------eeccccceecCccccceeeccccccceeh
Confidence 11233568899988888999999999999
Q ss_pred eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec-
Q 001311 767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM- 844 (1102)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~- 844 (1102)
|+..-. ....+ . .+|.+.|.++.|||.|+-+++|+ |.+|+||....+...-.+.
T Consensus 257 DmR~l~-------------------~p~~v---~--~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 257 DMRNLS-------------------RPLNV---H--KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred hhhhhc-------------------ccchh---h--cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence 874311 11111 1 23899999999999999999999 9999999998765432221
Q ss_pred CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311 845 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 845 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 881 (1102)
.-...|.|+.||- |.+++++|++|+.|++|.....+
T Consensus 313 kRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 313 KRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhhheeeEEEEec-cccEEEecCCCcceeeeecchhh
Confidence 1134699999999 99999999999999999876443
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.4e-24 Score=229.34 Aligned_cols=276 Identities=14% Similarity=0.232 Sum_probs=225.2
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc-cccCCCCCCCCeeE-EE
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA 813 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~-l~ 813 (1102)
.+|...|..+++.++. .+++++.||++++|+-.. ++.+. ..+ .+|.+.|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~--~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAF--EGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceec--ccCcceeeccce
Confidence 5688889888877666 589999999999997421 11111 111 125555555 77
Q ss_pred Eec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311 814 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 814 ~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
+.+ ++-.+++|+ |..|.+|.........++.+|.+.|.+++... ++. +++|+.|.+++||-. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 444578888 99999999999999999999999999999876 666 899999999999975 567778999999
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 971 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~ 971 (1102)
.|+++++-|++ .++||+.|.+|++|.-.+ .++.+.||.. .|+.+++-+++.++-++.||.|+.|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999988 889999999999998654 5778888875 899999999999999999999999999 67
Q ss_pred eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311 972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus 972 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
+++.... +|..-|+++....++..++++++|++++||+.. ++.+.+. +|. ..+| ++.+-+ ..-+
T Consensus 210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~--NgDI 273 (745)
T KOG0301|consen 210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL--NGDI 273 (745)
T ss_pred ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee--CCCE
Confidence 7766654 999999999999999999999999999999987 6666666 442 2266 666665 3468
Q ss_pred EEEecCCcEEEEeccCC
Q 001311 1052 ALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1052 ~s~~~Dg~v~vW~~~~~ 1068 (1102)
++|++||.|+||-....
T Consensus 274 vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEeccCceEEEEEeccc
Confidence 88999999999998743
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-22 Score=221.36 Aligned_cols=516 Identities=15% Similarity=0.191 Sum_probs=324.8
Q ss_pred EEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCe-eEEEEecCCCcEEEEeCCCCeee
Q 001311 412 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ 490 (1102)
Q Consensus 412 ~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~-~~l~s~~~d~~i~vWd~~~~~~~ 490 (1102)
..-.||+|+++++.... ..|.||...+|++++ .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34578999999987764 569999999999887 58899999999999887663 47889999999999999999999
Q ss_pred EEeecCCCCeEEEeeeec-CCccEEE-EEeCCCeEE-EEEcCCCCCeeeecCCCCeeeEEEE-ccCCceeeeccccCcee
Q 001311 491 YIFEGHEAPVYSVCPHHK-ENIQFIF-STALDGKIK-AWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 491 ~~~~~h~~~v~~v~~~~~-~~~~~l~-s~s~dg~i~-~wd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~~~~~~~~i~ 566 (1102)
+++..+.. +.++.+.+. .+...++ .+..|..+. ....+..+.. ....-..+ +..+ .+..++.. -.
T Consensus 96 kt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~-------~~~~~~t~~~~~~-d~~~~~~~--~~ 164 (792)
T KOG1963|consen 96 KTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQS-------SRFVLATFDSAKG-DFLKEHQE--PK 164 (792)
T ss_pred EEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccce-------eeeEeeeccccch-hhhhhhcC--Cc
Confidence 99875433 333332110 0001111 111111110 0000000000 00000000 0000 01111111 23
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc---CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 643 (1102)
++.+++.+++.+.. .+..+.+|+..++. ..... ...|...+++.+++|.+++++++..||.|.+|.--..
T Consensus 165 ~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~----- 237 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS----- 237 (792)
T ss_pred cEEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----
Confidence 45566666544444 45578899887755 11111 1123334789999999999999999999999963220
Q ss_pred ecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC
Q 001311 644 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 723 (1102)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 723 (1102)
. ..+-+.++|
T Consensus 238 --~--------------------------------------------------------------~~~~t~t~l------ 247 (792)
T KOG1963|consen 238 --S--------------------------------------------------------------DDSETCTLL------ 247 (792)
T ss_pred --c--------------------------------------------------------------cccccceEE------
Confidence 0 000111111
Q ss_pred CCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311 724 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 803 (1102)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 803 (1102)
.=|...|.++.|+++|.+|++||..+.+.+|.+.+ +. ...++.
T Consensus 248 ------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~--kqfLPR- 290 (792)
T KOG1963|consen 248 ------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GK--KQFLPR- 290 (792)
T ss_pred ------------EecccccceeEEecCCceEeecccceEEEEEeecC----------------------CC--cccccc-
Confidence 11778999999999999999999999999998743 22 111222
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC-----------CCCeeEEEEecCCCcEEEEEeCCCc
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSS 871 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~lasg~~dg~ 871 (1102)
-.++|..+.+|||+.+.+... |+.|.+..+.+.....++.+. .+-.+.++++| .-+.++..+..|.
T Consensus 291 -Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~ 368 (792)
T KOG1963|consen 291 -LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH 368 (792)
T ss_pred -cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce
Confidence 578899999999999888877 999999988776655554432 23367788999 7778888999999
Q ss_pred EEEEEeecceeeeeecc-----------ccccceeEEEecCCCEEEEEcC--------CC--cEEEEEcCCCcccceeee
Q 001311 872 IQIYNVRVDEVKSKLKG-----------HSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFL 930 (1102)
Q Consensus 872 v~vwd~~~~~~~~~l~~-----------h~~~V~~l~~s~d~~~l~s~s~--------Dg--~i~vwd~~~~~~~~~~~~ 930 (1102)
|.+||+.+.+.+..+.. +.-.+++++.+-.|.+++|+-. || .+++|-............
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 99999998776655521 3345788888888999998742 33 478998776544332222
Q ss_pred ecCCCCCCCCCCCcEEEE-ccCCc-EEEE-EeCCeEEEEEcCCceEee--------eeccCCCCCCeeEEEEcCCCcEEE
Q 001311 931 QIPTGRTPTAQSDTRVQF-HQDQI-HFLV-VHETQLAIFETTKLECVK--------QWVPRESSAPITHATFSCDSQLVY 999 (1102)
Q Consensus 931 ~~~~~~~~~~~~v~~~~~-spdg~-~l~~-~~d~~i~iwd~~~~~~~~--------~~~~~~h~~~v~~l~~spd~~~l~ 999 (1102)
.+..-|. ......+| ++... ..++ +.||.++||-....+-+. .....-|..++++++||.||..|+
T Consensus 449 ~I~~PH~---~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla 525 (792)
T KOG1963|consen 449 KINNPHG---NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA 525 (792)
T ss_pred EEecCCC---ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence 2222222 23333333 33333 5555 599999999884432211 111123688999999999997666
Q ss_pred EEeCCCeEEEEEcCC-ceeEEEeCCCcccCCCCCCCcccceEEEecCC-CCCEEEEEecCCcEEEEeccCCCccc
Q 001311 1000 ACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus 1000 s~s~Dg~I~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~-d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1072 (1102)
++.|++|.+||..+ .++.+......+.. + .+.|..+ .....+.....+.+.+|++.+..-.|
T Consensus 526 -~s~~~~Itiwd~~~~~~l~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 526 -VSFDDTITIWDYDTKNELLCTEGSRNWPI-A---------ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -EecCCEEEEecCCChhhhhccccccccch-H---------hHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 45799999999999 55555444222111 1 1222211 01233444568899999998888666
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.8e-23 Score=199.67 Aligned_cols=248 Identities=16% Similarity=0.272 Sum_probs=192.2
Q ss_pred eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311 444 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 523 (1102)
Q Consensus 444 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i 523 (1102)
.+.+.+..|.++|++++.+ +. ++++||.|-+|+|||+.+.+.+..+..|.+.|+++.|.+......|++|+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 3456688999999999984 66 8999999999999999999999999999999999999765544589999999999
Q ss_pred EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC
Q 001311 524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 603 (1102)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 603 (1102)
.+|+...-.....+..|.+.|+.+++.|.| +.-++.+.|+.+++||+-.|+.-..+...
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~---------------------KLALsVg~D~~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSG---------------------KLALSVGGDQVLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCC---------------------ceEEEEcCCceeeeehhhcCccceeeccC
Confidence 999998877777777776666665555555 56788999999999999999876666543
Q ss_pred CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311 604 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 683 (1102)
Q Consensus 604 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1102)
.. ...+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.
T Consensus 169 ~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~------------------------------------- 206 (362)
T KOG0294|consen 169 NK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE------------------------------------- 206 (362)
T ss_pred Cc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh-------------------------------------
Confidence 32 3449999999988888764 6777765443 1111110
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311 684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 763 (1102)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 763 (1102)
T Consensus 207 -------------------------------------------------------------------------------- 206 (362)
T KOG0294|consen 207 -------------------------------------------------------------------------------- 206 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee
Q 001311 764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 842 (1102)
Q Consensus 764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~ 842 (1102)
....+.|+.|. ++..+++|. |+.|.+||..+..+...
T Consensus 207 -----------------------------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 207 -----------------------------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE 244 (362)
T ss_pred -----------------------------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCcccee
Confidence 11122333333 344566666 78899999998888999
Q ss_pred ecCCCCCeeEEEEe-cCCCcEEEEEeCCCcEEEEEeecc
Q 001311 843 FMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 843 ~~~~~~~i~~l~~s-p~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
+.+|...|..+.+- ..++.+|++++.||.|+|||+...
T Consensus 245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999843 226789999999999999999865
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-24 Score=201.08 Aligned_cols=257 Identities=18% Similarity=0.232 Sum_probs=206.3
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCC
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 421 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 421 (1102)
.|.+.|..+...--|++ |||++.|++|+|+.+..+.... ....+.||.++|+.++|.. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48899999999999996 9999999999999998765311 1115899999999999987 899
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-e--eeEEeecCCC
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEA 498 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~--~~~~~~~h~~ 498 (1102)
+||+++.||.|.||.-++|+ ..+..+...|...|++|+|.|.+-.+.|++++.||.|.|.+.++. . ..+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999984 555567889999999999999988889999999999999998764 2 2244577999
Q ss_pred CeEEEeeeecCC-c-----------cEEEEEeCCCeEEEEEcCCCC--CeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311 499 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564 (1102)
Q Consensus 499 ~v~~v~~~~~~~-~-----------~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 564 (1102)
.|++++|.+..- | ..|++|+.|..|++|+.+... ....+..|...|+.+++.|.-..
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--------- 221 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--------- 221 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence 999999976521 1 469999999999999998753 22357889999999999886421
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
-..++++++.||+|.||..+.... ..++ .+.....+..+.||..|+.|++++.|+.|.+|.-.
T Consensus 222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 013699999999999998763211 1111 12223458899999999999999999999999754
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=8.4e-24 Score=217.74 Aligned_cols=282 Identities=12% Similarity=0.163 Sum_probs=225.6
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
|..-|..++++...+++.+++. |.|+|||+....- +.....+......+.|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--------------------k~PvsqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--------------------KSPVSQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--------------------CCccccccccCcccceeeeEecCC
Confidence 7888889999999988887765 5899999854310 000011222335778999999999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 894 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1102)
|+.|++|+ -.++.|||+...... ..+......+.+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 688999999865543 33333335688899999 999999999999999999999999999999999999
Q ss_pred eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE
Q 001311 895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 973 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~ 973 (1102)
||..++||..|-||+-|.+||.||+..+...... + ....|.++-.+|++.+++++ .++.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----d----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----D----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhh-----h----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 9999999999999999999999999986542211 1 11468899999999999998 677888888765544
Q ss_pred eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
. ..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+ ....|. +|..+- |.+++||
T Consensus 627 y---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 627 Y---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred e---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence 2 234689999999999999999999999999999999999887665 122244 677776 5689999
Q ss_pred EecCCcEEEEec
Q 001311 1054 GLSDGGVHVFEP 1065 (1102)
Q Consensus 1054 ~~~Dg~v~vW~~ 1065 (1102)
|+.|....||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888876
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-20 Score=207.41 Aligned_cols=255 Identities=16% Similarity=0.226 Sum_probs=207.7
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
...|+..-+.|+|.|+|.+ +.+++.||.|++|+......... ++.-+...|.+++. ++.
T Consensus 9 Ryaht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSN 67 (933)
T ss_pred hhhccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--ccc
Confidence 3468999999999999996 88899999999999876521110 22236777777776 455
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
+|++|+.+++|.+|...+++.-.. +....-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 999999999999999998765332 333457899999999999 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
++.| ++++.+|++.+.||.|++||+.++.....+..-...-. ......+..++|+|++..++..+
T Consensus 143 ~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-------------~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 143 QLSY--DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-------------FILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred eeeE--cCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-------------ccccceeeeeeecCCCCeEEeec
Confidence 9987 56668999999999999999998776665543211000 00022455678888888899999
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
.|+.|.+|+..+......+........+..+.|+|.|+|||+++.+|.|.|||+.+
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999998887666555688999999999999999999999999986
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.6e-22 Score=197.56 Aligned_cols=242 Identities=19% Similarity=0.209 Sum_probs=187.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
..+.|+.|.|+|.+.. |++++.||++++||+...+.. ..-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~--------------------~~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLK--------------------LKFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhh--------------------hheecCCceeeeeccC-CceEE
Confidence 5689999999999997 666679999999999876433 2456889999999987 56788
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~ 504 (1102)
+|+.||.|+++|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+.......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 69999999999999998866666665 344788776
Q ss_pred eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311 505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 584 (1102)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 584 (1102)
. .++.|+.|+.|..|.+||+++...........- +-.+.++++-|++.-+++++-||
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence 3 346899999999999999998765542221110 11344455555555688899999
Q ss_pred eEEEEECCCc----ceEEEEcCCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 585 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 585 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.|.+=.++.. +....++.|.. .-+|++++|+|--..+++|+.||.|.+||..+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 9888666554 23334443321 236889999999999999999999999998776
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=197.29 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=179.2
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC--CCCeeEEEEecCCCcEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 480 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~ 480 (1102)
+-..|.+.|..+...--|++||||+.|++|+|+.+..+.....+.+|.||.++|+.++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4678999999999888999999999999999999998877677788999999999999987 677 899999999999
Q ss_pred EEeCCCCee--eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC---CeeeecCCCCeeeEEEEccC---
Q 001311 481 VWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSAD--- 552 (1102)
Q Consensus 481 vWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 552 (1102)
||.-..|+- ...+..|...|++++|.+..-|-.|++++.||.|.+.+.+... .......|.-.|+++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999777743 4566789999999999999989999999999999999988762 22344567778899999886
Q ss_pred CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC----CEEEEEECCC
Q 001311 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 628 (1102)
Q Consensus 553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg 628 (1102)
|...-.+... .-..|++|+.|+.|+||+..++.-+..-...+|...|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111000 0146999999999999999887533222233456689999999953 5899999999
Q ss_pred cEEEEEcc
Q 001311 629 GIKILATS 636 (1102)
Q Consensus 629 ~i~iwd~~ 636 (1102)
++.||...
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999764
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.2e-22 Score=194.04 Aligned_cols=240 Identities=15% Similarity=0.239 Sum_probs=178.4
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 420 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 420 (1102)
...|.+.|+++.+.+..-.++++|+.||.|.|||++....-....+- -...|. ....-..+|.-.|..+-|-| |.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c~--v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKCI--VAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheeee--ccccCCccceeeeeeeEEeeecC
Confidence 34599999999999864445999999999999999764411100000 000000 11123568999999999999 88
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCC-eeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
.++.+++.|.+++|||..+-+... .++ -.+.|.+-+|||-.. +-++++|..|-.|++-|+.+|.+.+++.||.+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 899999999999999999876543 222 457788888988644 436788888899999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|.++.|++..+ -.|++|+.||.|++||++...
T Consensus 191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------------------- 222 (397)
T KOG4283|consen 191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------------------- 222 (397)
T ss_pred eEEEEeccCce-eEEEecCCCceEEEEEeeccc-----------------------------------------------
Confidence 99999987665 678999999999999997521
Q ss_pred EeCCCeEEEEECCCcceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311 580 AGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 641 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 641 (1102)
|..++.|...++....++ ...+.+.+++++|+.++.++++.+.|..+++|+..+|...
T Consensus 223 ----gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 223 ----GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ----ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 223333333322222222 2233457999999999999999999999999999888433
No 128
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.7e-21 Score=210.91 Aligned_cols=510 Identities=13% Similarity=0.160 Sum_probs=316.6
Q ss_pred eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC---CeEEEE
Q 001311 350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVA 426 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~ 426 (1102)
..-.||+|+++++.... .+|.||...|++++. .+.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~~~--~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG--NFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEeeC--CEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEE
Confidence 34579999998666544 899999999999887 589999999999999854 467799
Q ss_pred ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEc----CCCCeeEEEEecCCCc-EEEEeCCCCeeeE----------
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKT-IKVWDATNGAKQY---------- 491 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s----~d~~~~~l~s~~~d~~-i~vWd~~~~~~~~---------- 491 (1102)
+.||.|++||...+..++. +.. ..+|..+.+. .... .+..+..|.. +.-...+..+...
T Consensus 79 sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~ 152 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA 152 (792)
T ss_pred ecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeecccc
Confidence 9999999999999987653 221 2233333332 1111 1111222211 1111111111111
Q ss_pred ---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311 492 ---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 568 (1102)
Q Consensus 492 ---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 568 (1102)
.+.+|.. -.++.. .+.|. +.....+..+.+|...... .. ... +-..-++.-.+++.
T Consensus 153 ~~d~~~~~~~-~~~I~~--~~~ge-~~~i~~~~~~~~~~v~~~~-~~-~~~---------------~~~~~~Htf~~t~~ 211 (792)
T KOG1963|consen 153 KGDFLKEHQE-PKSIVD--NNSGE-FKGIVHMCKIHIYFVPKHT-KH-TSS---------------RDITVHHTFNITCV 211 (792)
T ss_pred chhhhhhhcC-CccEEE--cCCce-EEEEEEeeeEEEEEecccc-ee-ecc---------------chhhhhhcccceeE
Confidence 1122322 122333 23333 3333345667788776543 11 100 11111222347888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCC--cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311 569 QFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 569 ~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
+++|.+++++++..||.|.+|.--. +.....-..|-|...|.+++|+++|.+|++|+..|.+.+|.+.++++.+ +.
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--LP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--LP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--cc
Confidence 9999999999999999999996433 2222222234555689999999999999999999999999998873211 10
Q ss_pred cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCC
Q 001311 647 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 726 (1102)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~ 726 (1102)
T Consensus 290 -------------------------------------------------------------------------------- 289 (792)
T KOG1963|consen 290 -------------------------------------------------------------------------------- 289 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311 727 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 806 (1102)
Q Consensus 727 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 806 (1102)
.-...|..+.++||+...+....|..|.+-....-... .... -..+.+... .....
T Consensus 290 ----------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k------~tIs--gi~~~~~~~------k~~~~ 345 (792)
T KOG1963|consen 290 ----------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK------STIS--GIKPPTPST------KTRPQ 345 (792)
T ss_pred ----------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh------hhcc--CccCCCccc------ccccc
Confidence 03367899999999999999999999988765321110 0000 000000000 00134
Q ss_pred CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec-----CCC------CCeeEEEEecCCCcEEEEEe-------
Q 001311 807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-----PPP------PAATFLAFHPQDNNIIAIGM------- 867 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~-----~~~------~~i~~l~~sp~d~~~lasg~------- 867 (1102)
+-.+.++++|--+.++-.. .|.|.+||+.+-+.+..+. .+. -.+++++.+. .|.+++|+-
T Consensus 346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFN 424 (792)
T ss_pred ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhh
Confidence 4467788888544555444 8999999998877665542 122 2478888888 699999874
Q ss_pred -CCC--cEEEEEeecce----eeee-eccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCccc-----ceeeeec
Q 001311 868 -DDS--SIQIYNVRVDE----VKSK-LKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQI 932 (1102)
Q Consensus 868 -~dg--~v~vwd~~~~~----~~~~-l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~-----~~~~~~~ 932 (1102)
.|| .+++|-..... +... -..|...+...+|.+. ...+++++.||.++||-+...+.. .+.+..+
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 233 67788765432 2222 2458877777777543 237999999999999998432211 1223222
Q ss_pred CCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcC----CCcEEEEEeCCCeE
Q 001311 933 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATV 1007 (1102)
Q Consensus 933 ~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~sp----d~~~l~s~s~Dg~I 1007 (1102)
..-|. .++..++|+.||..|+++.++.|.+||..+. ....... .-..++..++|.. ++ .+........
T Consensus 505 ~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 577 (792)
T KOG1963|consen 505 GSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDG--ALVHATQQRL 577 (792)
T ss_pred ecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhccccccc--ceeeccCceE
Confidence 22222 4789999999999999999999999999883 3322221 1123344444332 33 2334457889
Q ss_pred EEEEcCCceeEEEe
Q 001311 1008 CVFSAANLKLRCRI 1021 (1102)
Q Consensus 1008 ~vwd~~~~~~~~~~ 1021 (1102)
.+|++-++.+...+
T Consensus 578 ~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 578 SVWNLLSMSLIWNL 591 (792)
T ss_pred ehHhhhhhheecch
Confidence 99999888877633
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.2e-23 Score=209.82 Aligned_cols=212 Identities=16% Similarity=0.171 Sum_probs=176.6
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC--
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-- 485 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-- 485 (1102)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4689999999999999999999999999999998776 4789999999999999999 89999999999999874
Q ss_pred -------CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311 486 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 486 -------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
+-++++.|..|+-+|+++...+.+-..+++|+|.|.++++||+..+..+..+..+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------------------ 217 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------------------ 217 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------------------
Confidence 3467889999999999998766655679999999999999999987665544332
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc----------------ceEEEEcCCCCCCCcCeEEEcCCCCEEE
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------QLLTSIDADGGLPASPRIRFNKDGCLLA 622 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 622 (1102)
..+.+++++|.+..+++|+++|.|.+.++... ..+..+.+|.....|+|++++-||.+|+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 25666777777778888888888888776432 2344555565555899999999999999
Q ss_pred EEECCCcEEEEEccCCccceeeccc
Q 001311 623 VSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
+|+.||.+.+||+.+. ++++.+..
T Consensus 294 SGd~dg~VcvWdi~S~-Q~iRtl~~ 317 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK-QCIRTLQT 317 (476)
T ss_pred eeCCCCCEEEEecchH-HHHHHHhh
Confidence 9999999999999887 67776654
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=222.22 Aligned_cols=251 Identities=16% Similarity=0.192 Sum_probs=203.7
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
.|....+.++|.|+|..+++++.||.|++|+.......| ..+. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~------~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETID------ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhh------ccCceeEEEee--
Confidence 478889999999999999999999999999864321100 0000 14555666665
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 895 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1102)
++.+|++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+.+|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 444888888 89999999988776555555667899999999 9999999999999999999999889999999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC-cEEEEEeCCeEEEEEcCCceEe
Q 001311 896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ-IHFLVVHETQLAIFETTKLECV 974 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~d~~i~iwd~~~~~~~ 974 (1102)
|.|+|.+.+||+.+.||.|+|||++.+....................+..++|+|+| ++++.+.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999999999999999999999999987654322211111111112456789999995 4555589999999999999998
Q ss_pred eeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 975 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 975 ~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
..+....|...+.++.|||+|+|||+++.||.|.|||+++
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8888777777799999999999999999999999999997
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.6e-21 Score=211.38 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=149.4
Q ss_pred EEEEecCCCeEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeeeec
Q 001311 811 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 811 ~l~~s~d~~~las~-s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~ 887 (1102)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 45666777765544 3 67888888888777666653 23468899999 899999888775 57788998877665543
Q ss_pred cccccceeEEEecCCCEEEE-EcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEE
Q 001311 888 GHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 964 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~d~~i~ 964 (1102)
. ...+.+++|++|+++|+. +..++.|++||+++++............+ ........++|+|+|+++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 234678999999998854 45699999999998754322111111100 01113357899999998665 3567899
Q ss_pred EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311 965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+||..+++.+..+. +...+.+++|+|+|++|++++ .++.|+|||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988876553 245799999999999998764 68999999999999998887
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=8.1e-23 Score=217.39 Aligned_cols=434 Identities=15% Similarity=0.149 Sum_probs=274.9
Q ss_pred EEEcc---CCCeEEEEECCCeEEEEEccCCcee---eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311 414 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 487 (1102)
Q Consensus 414 l~~sp---dg~~las~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~ 487 (1102)
..|++ ...+||.+.+||.|.++|.+....- +++.....|.+.|..+.|.| |+. .|++++.|.++++||++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 56665 4567899999999999998754311 22345668999999999999 444 8999999999999999999
Q ss_pred eeeEE--eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 488 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 488 ~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
+++.. +.||.+.|.++||.+.. ...|++|+.||.|.+||++....... ... ..+++.+|...+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~-e~~------------~~~~~~~~n~~p- 197 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDAL-EEF------------DNRIYGRHNTAP- 197 (720)
T ss_pred eeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhH-HHH------------hhhhhccccCCC-
Confidence 99876 89999999999998654 47899999999999999975431110 000 000000010000
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCe---EEEcCCCCEEEEEEC-CCcEEEEEccCCccc
Q 001311 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL 641 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 641 (1102)
.|. .- ....++-|-... ..|.+ +.+..|...||+++. |+.|++||++.....
T Consensus 198 -----tps--kp----~~kr~~k~kA~s-------------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 198 -----TPS--KP----LKKRIRKWKAAS-------------NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred -----CCC--ch----hhcccccccccc-------------CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 000 00 001122222211 12333 556678888998887 999999999877333
Q ss_pred eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311 642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 721 (1102)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 721 (1102)
.+.-...... +.
T Consensus 254 ~r~ep~~~~~-------------------------------------------------------------------~~- 265 (720)
T KOG0321|consen 254 YRQEPRGSDK-------------------------------------------------------------------YP- 265 (720)
T ss_pred cccCCCcccC-------------------------------------------------------------------cc-
Confidence 2211100000 00
Q ss_pred CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311 722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 801 (1102)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 801 (1102)
.. ......+.++.....|.+|++.+.|+.|+.|++......+.+.. .|.+
T Consensus 266 -----------t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~------------sg~~------ 315 (720)
T KOG0321|consen 266 -----------TH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF------------SGKL------ 315 (720)
T ss_pred -----------Cc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc------------cCcc------
Confidence 00 00234577888888899999999999999999865443332211 1111
Q ss_pred CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
....-..-..+||+.++++|+ |...++|.+.+.+. ...+.+|.-.|++++|.|..-.-+|++++|..++||++..
T Consensus 316 ---~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 316 ---NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ---cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 111112235689999999999 99999999987665 4557899999999999996667788889999999999965
Q ss_pred ce--------------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcE
Q 001311 880 DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 945 (1102)
Q Consensus 880 ~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 945 (1102)
+- ....+++|.-.+..+.++-.+.+.... .+..++|... ..
T Consensus 393 ~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------~s 447 (720)
T KOG0321|consen 393 GLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------VS 447 (720)
T ss_pred chhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------cc
Confidence 42 223445565555555554433332222 3345555432 23
Q ss_pred EEEccCCcEEEEE-----eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC-----------CCeEEE
Q 001311 946 VQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVCV 1009 (1102)
Q Consensus 946 ~~~spdg~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~-----------Dg~I~v 1009 (1102)
++..|++.-...+ ..-.|...+....+........+|-..|....+++.+..+++.+- ++.+.+
T Consensus 448 ~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s 527 (720)
T KOG0321|consen 448 LACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNS 527 (720)
T ss_pred hhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccc
Confidence 3334443333331 112344455444444433333456777777788887777888887 888888
Q ss_pred EEcCC
Q 001311 1010 FSAAN 1014 (1102)
Q Consensus 1010 wd~~~ 1014 (1102)
|....
T Consensus 528 ~~s~l 532 (720)
T KOG0321|consen 528 PNSSL 532 (720)
T ss_pred ccccc
Confidence 87543
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.9e-22 Score=192.17 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=218.2
Q ss_pred eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 490 (1102)
Q Consensus 411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~ 490 (1102)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999865333 5889999999999999999 7999999999999999999999
Q ss_pred EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311 491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 570 (1102)
Q Consensus 491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 570 (1102)
+.+. ...+|+.+.|++...+..+++ -.+..-.+-++..+. -..+...+++..-. .-.+..|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence 9987 788999999998766544443 333333333333211 11122223332111 1112358
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311 571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 650 (1102)
Q Consensus 571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 650 (1102)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|++|+..+.|..||.|++..-... +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~--- 232 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G--- 232 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence 8889999999999999999999999998887554 346889999999999999999999999986432000 0
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311 651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 730 (1102)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 730 (1102)
.++.+. ..
T Consensus 233 -----------------------------------------------------------r~~e~e-----------~~-- 240 (405)
T KOG1273|consen 233 -----------------------------------------------------------RDGEVE-----------PE-- 240 (405)
T ss_pred -----------------------------------------------------------ccCCcC-----------hh--
Confidence 000000 00
Q ss_pred ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311 731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810 (1102)
Q Consensus 731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~ 810 (1102)
| ++-|+ -....-.
T Consensus 241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQDV-------------VNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence 0 00000 0222345
Q ss_pred EEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 811 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 811 ~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
+++|+.+|.|++.++ ...++||....|.+++.+.|.. .....+.|+| -...+++- ..|.|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 688999999999887 4779999999999999999887 4577899999 66677766 789999998654
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=206.02 Aligned_cols=457 Identities=12% Similarity=0.158 Sum_probs=285.8
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
.|..++|-|||..|++.++ ..+.|||++.|..+. .+++|.+.|+|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 8899999999998777655 789999999998887 5999999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeee
Q 001311 428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 507 (1102)
Q Consensus 428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~ 507 (1102)
.|..|.||+-+-...++ ..|.+.|.|+.|+|-.. .|+|++-. ..-+|.......+ .|...+.+++.+.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976544443 25999999999999998 58888754 4668986544332 2333333333334
Q ss_pred cCCccEEEEEeCCCeEEEEEcCCCCCeeeec---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 584 (1102)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 584 (1102)
..||++++.|-.+|+|.+=+-.. +....+. +...+|.+++|+|... .| ....+++.....
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence 78889999999999998875443 3222222 3455777777777643 11 113466677778
Q ss_pred eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311 585 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 664 (1102)
Q Consensus 585 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1102)
++.+|.+ +|+.+..-..-+- .-.|+.+-++|.+++.|+.|+.+.+|-. .| -.+-++
T Consensus 204 TLSFy~L-sG~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L~~fTR-~G-vrLGTv------------------- 259 (1081)
T KOG1538|consen 204 TLSFYQL-SGKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQLSLFTR-DG-VRLGTV------------------- 259 (1081)
T ss_pred eeEEEEe-cceeecccccCCC--CchhheeccCCcEEEEccCCCceEEEee-cC-eEEeec-------------------
Confidence 8888887 4554443222211 3468999999999999999999999852 22 111000
Q ss_pred cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311 665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 744 (1102)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 744 (1102)
......|..
T Consensus 260 -----------------------------------------------------------------------g~~D~WIWt 268 (1081)
T KOG1538|consen 260 -----------------------------------------------------------------------GEQDSWIWT 268 (1081)
T ss_pred -----------------------------------------------------------------------cccceeEEE
Confidence 003357888
Q ss_pred EEEccCCceEEEeecCceEEeeeccccccC-------CCCc--------------------------------ccc---c
Q 001311 745 LIFTNSGNAILALASNAIHLLWKWQRTERN-------SSGK--------------------------------ATA---S 782 (1102)
Q Consensus 745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-------~~~~--------------------------------~~~---~ 782 (1102)
++..|+++.++.|+.||+|-.|++...... ...+ .++ .
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 889999999999999999998887543100 0000 000 0
Q ss_pred ccceeccCCCccccccccCCC-CCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEE--ecCC
Q 001311 783 VAPQLWQPPSGIMMTNDVTDS-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HPQD 859 (1102)
Q Consensus 783 ~~~~~w~~~~~~~~~~~~~~~-~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~--sp~d 859 (1102)
..+.+|...++.......... .-.....+--+--.++.++.+.+..+..+|...-.. +... -.+-|.-+.. -|-+
T Consensus 349 eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~g 426 (1081)
T KOG1538|consen 349 EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPG 426 (1081)
T ss_pred ceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCC
Confidence 022333333332111000000 000000111111234455555566677777643111 1000 0000111111 1214
Q ss_pred CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311 860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 939 (1102)
Q Consensus 860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 939 (1102)
..-|+.|..||.|+-.=+.+.-.+- +......|.|+..+...+.||+..+.++..++|+.+++. ..+.+
T Consensus 427 REgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp------ 495 (1081)
T KOG1538|consen 427 REGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP------ 495 (1081)
T ss_pred cceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC------
Confidence 5567788888877644444332222 233456799999999999999999999999999999764 22221
Q ss_pred CCCCcEEEEccCCcEEEE-EeCCeEE
Q 001311 940 AQSDTRVQFHQDQIHFLV-VHETQLA 964 (1102)
Q Consensus 940 ~~~v~~~~~spdg~~l~~-~~d~~i~ 964 (1102)
.+.+++|.....-+.+ ...|.+.
T Consensus 496 --g~nSV~wNT~~E~MlcfT~~g~L~ 519 (1081)
T KOG1538|consen 496 --GANSVAWNTQCEDMLCFTGGGYLN 519 (1081)
T ss_pred --CCceEEeeccccceEEEecCCceE
Confidence 5688889875444333 4445443
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.4e-21 Score=188.34 Aligned_cols=284 Identities=15% Similarity=0.181 Sum_probs=209.7
Q ss_pred CCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001311 405 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 484 (1102)
Q Consensus 405 ~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~ 484 (1102)
....+.|+.+.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3457799999999999999999999999999999875332 335899999999998665 899999999999999
Q ss_pred CCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311 485 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564 (1102)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 564 (1102)
.++.....- .|..+|.++...+.. ..+++||-|++|++||.+.......+.... .|.++.
T Consensus 83 n~~~~~~ig-th~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~---------------- 142 (323)
T KOG1036|consen 83 NTGNEDQIG-THDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD---------------- 142 (323)
T ss_pred cCCcceeec-cCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEe----------------
Confidence 988765544 499999999986433 579999999999999998743333332221 333333
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311 565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 644 (1102)
-.++.|+.|+.|..|.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=..... ...+.
T Consensus 143 -------v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~s 214 (323)
T KOG1036|consen 143 -------VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQS 214 (323)
T ss_pred -------ccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhh
Confidence 2346799999999999999998765443332222345789999998888999999999876443322 00000
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCC
Q 001311 645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 724 (1102)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 724 (1102)
.+ . +|.+..
T Consensus 215 kk---y-----------aFkCHr--------------------------------------------------------- 223 (323)
T KOG1036|consen 215 KK---Y-----------AFKCHR--------------------------------------------------------- 223 (323)
T ss_pred hc---e-----------eEEeee---------------------------------------------------------
Confidence 00 0 000000
Q ss_pred CCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCC
Q 001311 725 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 804 (1102)
Q Consensus 725 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 804 (1102)
-..++ .-
T Consensus 224 ----------------------~~~~~----------~~----------------------------------------- 230 (323)
T KOG1036|consen 224 ----------------------LSEKD----------TE----------------------------------------- 230 (323)
T ss_pred ----------------------cccCC----------ce-----------------------------------------
Confidence 00001 00
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 868 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 868 (1102)
.-.+|.+++|+|--..||+|+ ||.|.+||+.+.+.+..+..-...|..++|+. +|..||+|+.
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 123578899999988999998 99999999999998988888888899999999 9999999873
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=199.56 Aligned_cols=248 Identities=13% Similarity=0.197 Sum_probs=194.7
Q ss_pred ccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 739 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
..+|.+.+|.|+|. .+++++....++.||+.+.+...-.. +.+ -....+....++++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g-~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYG-VEEKSMERFEVSHD 314 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCC-cccchhheeEecCC
Confidence 36788999999999 88888888999999985432211100 001 02345778899999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc-ccee
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITG 895 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~ 895 (1102)
+++|+..+ .|.|.+....+++.+.+++ -.+.|..++|+. |++.|++.+.+|.|++||+....+++++....+ .-++
T Consensus 315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts 392 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS 392 (514)
T ss_pred CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee
Confidence 99999988 8999999999999988887 567799999998 888888888999999999999999998864322 2356
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCccc-ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEcCCc
Q 001311 896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 971 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~d~~i~iwd~~~~ 971 (1102)
+|.|+++.|||+|+..|.|-|||.++.-.. ...++.....-. ..|+.+.|++|++.||.+ ....+++-.+.+.
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 888899999999999999999997653211 111222222111 478999999999999984 5678999999999
Q ss_pred eEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311 972 ECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 972 ~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
.....|.... --+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus 470 TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 470 TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9888887532 25679999999999999999999999999864
No 137
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=3e-22 Score=206.14 Aligned_cols=234 Identities=20% Similarity=0.322 Sum_probs=181.7
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
....++.+|++.=..++|++...-.|++|+.|++|++||+....... ........+.+|...|..++|
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhc
Confidence 44457888999889999999888789999999999999997654320 111223368999999999999
Q ss_pred cc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEee
Q 001311 417 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE 494 (1102)
Q Consensus 417 sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~ 494 (1102)
++ +..++++++.|+.+.|||++++ ..+......+|.+.|.|++|+|-+.. +|||||.|++|++||++.- ++++++.
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceecc
Confidence 99 7788899999999999999974 33444467899999999999999877 8999999999999999974 5789999
Q ss_pred cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
+|...|..|.|+|..+ ..|++++.|+.+.+||+..-+....-.........+ ....|.+...+.-+.|+|..
T Consensus 314 ~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred CCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCC
Confidence 9999999999988665 689999999999999998654433211111111111 22333344467777777777
Q ss_pred CEE-EEEeCCCeEEEEECC
Q 001311 575 NRF-LAAGDDFSIKFWDMD 592 (1102)
Q Consensus 575 ~~l-~~~~~dg~i~iwd~~ 592 (1102)
.++ +++++|+.+.||.+.
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 765 557899999999985
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=7.3e-21 Score=202.41 Aligned_cols=458 Identities=14% Similarity=0.191 Sum_probs=288.9
Q ss_pred CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 489 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~ 489 (1102)
.|..++|-|||..|+.+.. ..+.|||...|..+. ++++|.+.|+|++|+.||+ .+++|+.|+.|.+|.-. -+-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k-lEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK-LEG 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc-ccc
Confidence 8999999999999988754 459999999998766 5999999999999999999 79999999999999843 233
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
+-.+. |.+.|.|+.|+|-. +.|++++. ...-+|....... ........+.+++
T Consensus 87 ~LkYS-H~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V-----------------------~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKYS-HNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSV-----------------------SKHKSSSRIICCS 139 (1081)
T ss_pred eeeec-cCCeeeEeecCchH--HHhhhcch-hhccccChhhhhH-----------------------HhhhhheeEEEee
Confidence 33343 99999999987654 67888876 3455675543211 1111123566677
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC-CCCCCCcCeEEEcCCC-----CEEEEEECCCcEEEEEccCCcccee
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~ 643 (1102)
|..||.+++.|-.+|+|.+-+. +++....++. .+....|.+++|+|.. ..+++.....++.++.+... .+
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~I- 215 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QI- 215 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--ee-
Confidence 7778889999999999999985 4444444433 3345689999999953 34555555555555543211 00
Q ss_pred ecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC
Q 001311 644 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 723 (1102)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 723 (1102)
T Consensus 216 -------------------------------------------------------------------------------- 215 (1081)
T KOG1538|consen 216 -------------------------------------------------------------------------------- 215 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311 724 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 803 (1102)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 803 (1102)
++.+.+ .-...++.+.++|.+++.||.|+.+.+|.- .|..+.. +.
T Consensus 216 --gk~r~L-------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-----------------------~GvrLGT-vg-- 260 (1081)
T KOG1538|consen 216 --GKDRAL-------NFDPCCISYFTNGEYILLGGSDKQLSLFTR-----------------------DGVRLGT-VG-- 260 (1081)
T ss_pred --cccccC-------CCCchhheeccCCcEEEEccCCCceEEEee-----------------------cCeEEee-cc--
Confidence 001111 123357888899999999999999998853 2222221 11
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee------------------e-cCCCCCee------EEEEec
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT------------------F-MPPPPAAT------FLAFHP 857 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~------------------~-~~~~~~i~------~l~~sp 857 (1102)
.....|+.++..|++++++.|+ ||+|..|++...+.... + .+....|. .+++-
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY- 339 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY- 339 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh-
Confidence 1577899999999999999999 99999999753221100 0 11111122 22332
Q ss_pred CCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEe---cCCCEEEEEcCCCcEEEEEcCCCcccce------
Q 001311 858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKN------ 927 (1102)
Q Consensus 858 ~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~~~~~~~------ 927 (1102)
.+.||+--.+ .|.+|.+.+++....-..-... +..+.+| -.++.++.+ .+..+..+|+.+-+...+
T Consensus 340 --rnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlC-qekrLqClDF~Gvk~ReW~M~S~i 415 (1081)
T KOG1538|consen 340 --RNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLC-QEKRLQCLDFSGVKEREWQMESLI 415 (1081)
T ss_pred --hhhheecccc-eEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEE-cccceeeecccchhhhhhhHHHHH
Confidence 2356655444 6888888765432111000111 1112221 123444433 467788888876444332
Q ss_pred eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe
Q 001311 928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1006 (1102)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~ 1006 (1102)
+.+....|.. ...-|.+| .+|.|.-.=+++.-.+... .....|.|+.++...+.||+..+.++
T Consensus 416 RYikV~GGP~-------------gREgL~vGlknGqV~kiF~dN~~PiLl~---~~~tAvrClDINA~R~kLAvVDD~~~ 479 (1081)
T KOG1538|consen 416 RYIKVIGGPP-------------GREGLLVGLKNGQVLKIFVDNLFPILLL---KQATAVRCLDINASRKKLAVVDDNDT 479 (1081)
T ss_pred HhhhhhcCCC-------------CcceeEEEecCCcEEEEEecCCchhhee---cccceeEEeeccCCcceEEEEccCCe
Confidence 2223332211 12224444 5665432223332222211 22678999999999999999999999
Q ss_pred EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311 1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
..++|+.+++.+.+-. | ++ +++|..+..++|+-.+
T Consensus 480 c~v~DI~t~elL~QEp-------g-----~n--SV~wNT~~E~MlcfT~ 514 (1081)
T KOG1538|consen 480 CLVYDIDTKELLFQEP-------G-----AN--SVAWNTQCEDMLCFTG 514 (1081)
T ss_pred EEEEEccCCceEeecC-------C-----Cc--eEEeeccccceEEEec
Confidence 9999999999986543 3 45 7777776655655443
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.1e-22 Score=204.42 Aligned_cols=243 Identities=17% Similarity=0.244 Sum_probs=195.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
-.+.|.|++-+|+|.+ |+.|+..|.|++|.+.+|+.+. ++.+|...|+|+.|+-||.+|+
T Consensus 80 ~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~-------------------v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLN-------------------VLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred cccceeeeecCCCceE-EEeecccCcEEEEEeccccHHH-------------------HHHhhccceeEEEEeCCCcEEE
Confidence 4578999999999996 7777788999999999999886 5789999999999999999999
Q ss_pred EEECCCeEEEEEccC------CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 425 VAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~------~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
+||.||.|.+|++.. .....+...+..|.-+|+++...+.|...+|+|+|.|.++++||+..|..+.++. ...
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~ 218 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPS 218 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCC
Confidence 999999999998742 1134556678999999999999877655589999999999999999999998886 567
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC--ceeeecccc-CceeEEEEcCCCC
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG--TRTYQGFRK-RSLGVVQFDTTKN 575 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~~~~~~~~-~~i~~~~~~~~~~ 575 (1102)
.+.++++. +.+..++.|+.+|.|.+.++...... ...|..-.++..+ ...+.||.+ ..|+|++++-||.
T Consensus 219 si~av~lD--pae~~~yiGt~~G~I~~~~~~~~~~~------~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 219 SIKAVALD--PAERVVYIGTEEGKIFQNLLFKLSGQ------SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred cceeEEEc--ccccEEEecCCcceEEeeehhcCCcc------cccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 78888874 45579999999999998887653321 1111111112222 255667776 6899999999999
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 618 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 618 (1102)
.|++|+.||.|+|||+.+.++++++... .+.|+.+.+.|-.
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPLE 331 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeeccc
Confidence 9999999999999999999999888732 3368888887643
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.9e-20 Score=204.00 Aligned_cols=294 Identities=12% Similarity=0.134 Sum_probs=204.7
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999987654 344443 4678999999984 346778899999999999998887765544
Q ss_pred eEEEeeeecCCccEEE-EEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 500 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~-s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
+..++|+ ++++.++ +++.|+.|++||+.+......+... . ....++++|++.+++
T Consensus 75 ~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~---------------------~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V---------------------EPEGMAVSPDGKIVV 130 (300)
T ss_pred ccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C---------------------CcceEEECCCCCEEE
Confidence 4556664 4556554 4566899999999875443333211 1 233456666667788
Q ss_pred EEeCCC-eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceeecccccccccccC
Q 001311 579 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS 656 (1102)
Q Consensus 579 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 656 (1102)
++..++ .+.+||..+++.+..+.... ...+++|++++++|++++ .++.|++||+.++ +....+..+
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~-------- 198 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE-------- 198 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec--------
Confidence 877654 57788998887766554322 356799999999886554 5899999998776 222211100
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311 657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 736 (1102)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 736 (1102)
T Consensus 199 -------------------------------------------------------------------------------- 198 (300)
T TIGR03866 199 -------------------------------------------------------------------------------- 198 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
..+. .. .......++|+|
T Consensus 199 ------------~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 199 ------------IPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred ------------cccc------cc--------------------------------------------ccCCccceEECC
Confidence 0000 00 011123467788
Q ss_pred CCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEE-eCCCcEEEEEeecceeeeeeccccccc
Q 001311 817 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 893 (1102)
Q Consensus 817 d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1102)
++++++++. ++.|.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 888755432 6789999998887766553 445789999999 88888876 56899999999999999988754 556
Q ss_pred eeEEEec
Q 001311 894 TGLAFSH 900 (1102)
Q Consensus 894 ~~l~~s~ 900 (1102)
++++|+|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888865
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.1e-21 Score=186.20 Aligned_cols=246 Identities=17% Similarity=0.246 Sum_probs=185.3
Q ss_pred cccccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311 736 NLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 814 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~ 814 (1102)
.+|.-.|..+.|-|-.. .+.+++-|.++++||.++-+.. .. + ..++.|.+-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------------------~~--F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------------------VD--F---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------------------EE--e---ecCceeehhhc
Confidence 34778899999888444 5666677999999997542110 00 0 13555666677
Q ss_pred ecCCC---eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeee---
Q 001311 815 SKNDS---YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL--- 886 (1102)
Q Consensus 815 s~d~~---~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l--- 886 (1102)
||-.. ++|+|. |-.|++-|+.+|...+++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. .+...+
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 76433 677777 6789999999999999999999999999999977778999999999999999753 233332
Q ss_pred -----------ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc-E
Q 001311 887 -----------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-H 954 (1102)
Q Consensus 887 -----------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~ 954 (1102)
.+|.+.|.+++|+.|+.++++++.|..+++|+...|+........+...... ..-..+. +.+.. +
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence 3578899999999999999999999999999999887544333222221111 1111223 33333 3
Q ss_pred EEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311 955 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 955 l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
+..-.++.+.++.+-.+..++.+. .|...|.+.++.|+-+...++..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence 333467999999999999999987 77899999999999999999999999999976
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.1e-20 Score=199.55 Aligned_cols=313 Identities=17% Similarity=0.225 Sum_probs=227.3
Q ss_pred EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526 (1102)
Q Consensus 447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w 526 (1102)
..+.||++.|.+|...|.|. .|++|+.||+|+||.+.+|.|++++. ..+.|.+++|++.++...|+.+-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 35889999999999999998 89999999999999999999999887 56789999999888766666655444 5554
Q ss_pred EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE----eCCCeEEEEECCCcce----EE
Q 001311 527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----LT 598 (1102)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~~ 598 (1102)
+..-+..+. .+.+. ..|.++ ..++.+..|.-..... +.
T Consensus 470 np~~G~~~e----------------------~~~t~------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~ 515 (733)
T KOG0650|consen 470 NPIFGDRLE----------------------VGPTK------------ELLASAPNESEPDAAVVTWSRASLDELEKGVC 515 (733)
T ss_pred Cccccchhh----------------------hcchh------------hhhhcCCCccCCcccceeechhhhhhhccceE
Confidence 433221111 00000 112222 2356778887552221 11
Q ss_pred EEcCCCCCCCcCeEEEcCCCCEEEEEECCC---cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhh
Q 001311 599 SIDADGGLPASPRIRFNKDGCLLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 675 (1102)
Q Consensus 599 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1102)
..-.+ ...|+.+.|+..|.||++...++ .|.|.++... ..... |
T Consensus 516 ~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~P------------------F------------ 562 (733)
T KOG0650|consen 516 IVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQSP------------------F------------ 562 (733)
T ss_pred EEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccCc------------------h------------
Confidence 22112 34699999999999999987643 4555544332 00000 0
Q ss_pred ccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEE
Q 001311 676 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 755 (1102)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 755 (1102)
....+.|.++.|.|...+++
T Consensus 563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf 582 (733)
T KOG0650|consen 563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF 582 (733)
T ss_pred ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence 11346788999999999888
Q ss_pred EeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEc
Q 001311 756 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 834 (1102)
Q Consensus 756 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~ 834 (1102)
+++.. .++|||+ ..+.++...++ ....|..++++|.|..|+.++ |+.+..||+
T Consensus 583 VaTq~-~vRiYdL----------------------~kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 583 VATQR-SVRIYDL----------------------SKQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred EEecc-ceEEEeh----------------------hHHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence 87765 6777776 33333333333 467799999999999999999 999999999
Q ss_pred CC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec------c---eeeeeecccccc----ceeEEEec
Q 001311 835 MT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------D---EVKSKLKGHSKR----ITGLAFSH 900 (1102)
Q Consensus 835 ~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~------~---~~~~~l~~h~~~----V~~l~~s~ 900 (1102)
.- .+..+++..|...++.++|++ .-.++++|+.||++.|+.-.- . -.+..+.+|... |..+.|+|
T Consensus 637 dlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 637 DLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred ccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 74 356778899999999999999 888999999999999985321 1 235678899776 88999999
Q ss_pred CCCEEEEEcCCCcEEEE
Q 001311 901 ALNVLVSSGADSQLCVW 917 (1102)
Q Consensus 901 d~~~l~s~s~Dg~i~vw 917 (1102)
...+|++++.||+|++|
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 99999999999999998
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.6e-21 Score=194.68 Aligned_cols=291 Identities=15% Similarity=0.242 Sum_probs=224.4
Q ss_pred ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC--CeeeEEeecCCCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcC
Q 001311 453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYD 529 (1102)
Q Consensus 453 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~ 529 (1102)
.++|++|.|.|... ++++++.|++++||-+.. ...++.+.-...+|.+.+|.+ +|. .+++++....++.||+.
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC--CCceEEEecccceEEEEeecc
Confidence 46899999999988 899999999999998763 345666666678899999865 445 89999999999999998
Q ss_pred CCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCc
Q 001311 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 609 (1102)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 609 (1102)
+.+.... ....|.....+....+++++++|+..|..|.|.+-...+++.+..++..+. |
T Consensus 289 ~ak~~k~------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v 347 (514)
T KOG2055|consen 289 TAKVTKL------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---V 347 (514)
T ss_pred ccccccc------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---E
Confidence 7543321 112223334566677788888999999999999999999999999987654 8
Q ss_pred CeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccccc
Q 001311 610 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI 689 (1102)
Q Consensus 610 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1102)
..++|+.|++.|++.+.+|.|.+||++.. .++..+...
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~----------------------------------------- 385 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDD----------------------------------------- 385 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeec-----------------------------------------
Confidence 89999999999999999999999999877 444333210
Q ss_pred CCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecc
Q 001311 690 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 769 (1102)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 769 (1102)
| .-.-++++.+++|.++++|+..|.+-|||.+
T Consensus 386 ----------------------G--------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 386 ----------------------G--------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ----------------------C--------------------------ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 0 0122567888999999999999999999864
Q ss_pred ccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCC
Q 001311 770 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPP 846 (1102)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~ 846 (1102)
..-.+...+.+.+ ..+-...|+++.|++|.+.||.++ ...+++-.+.+......+...
T Consensus 418 s~~~s~~PkPik~-------------------~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~ 478 (514)
T KOG2055|consen 418 SCFASTNPKPIKT-------------------VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS 478 (514)
T ss_pred hhhccCCCCchhh-------------------hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC
Confidence 4222111111111 012456799999999999999998 477999999887777666544
Q ss_pred ---CCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 847 ---PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 847 ---~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
-+.|+|++||| .+.++|.|.++|.|.+|.+.
T Consensus 479 n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 34699999999 89999999999999999874
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.5e-21 Score=205.12 Aligned_cols=290 Identities=12% Similarity=0.118 Sum_probs=207.4
Q ss_pred ceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEE
Q 001311 752 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 830 (1102)
Q Consensus 752 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~ 830 (1102)
..|+.+.++|.|.++|.....+. ++..++.. . ..|.+.|..+.|-|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence 35677777899999987543332 11111111 1 23999999999999777888887 89999
Q ss_pred EEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---------------------------
Q 001311 831 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 881 (1102)
Q Consensus 831 iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--------------------------- 881 (1102)
+||+++.+++.. +.+|.+.|.+++|.|.+...+++|+.||.|.|||++-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988877 899999999999999889999999999999999986321
Q ss_pred eeeeecccccccee---EEEecCCCEEEEEcC-CCcEEEEEcCCCcccce-eeeecCC--CCCCCCCCCcEEEEccCCcE
Q 001311 882 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQIPT--GRTPTAQSDTRVQFHQDQIH 954 (1102)
Q Consensus 882 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~-~~~~~~~--~~~~~~~~v~~~~~spdg~~ 954 (1102)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ ....... .+......+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223345666666 666789999999988 99999999987543211 1111111 11111235667777777888
Q ss_pred EEE-EeCCeEEEEEcCCceEeeeeccCCCCCC--eeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCC
Q 001311 955 FLV-VHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus 955 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
|.+ +.|+.|+.|++.+...-......++... -..-..+||+.+|++|+.|...++|.+.+.+.--.+. .||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence 888 6999999999987554332222232111 1222469999999999999999999998876543222 244
Q ss_pred CCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1032 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1032 ~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.-+ |. .++|.|.+-.-++++++|-.+++|++..+-
T Consensus 360 t~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 TRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 333 44 888888776778999999999999996654
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.2e-20 Score=178.89 Aligned_cols=267 Identities=19% Similarity=0.382 Sum_probs=189.4
Q ss_pred eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC----eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525 (1102)
Q Consensus 450 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~ 525 (1102)
.+|.+-|.++.|.+-|+ .++||+.|++|+|||.++. .+....+.|.+.|..+.|....-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999 7999999999999997543 45567789999999999988888999999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC
Q 001311 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 605 (1102)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 605 (1102)
|.-.. ..+.. .=+-|.. ..++. ..
T Consensus 88 WEE~~----~~~~~---------------------------------------------~~~~Wv~-----~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEA---------------------------------------------HGRRWVR-----RTTLV--DS 111 (361)
T ss_pred eeecc----ccccc---------------------------------------------ccceeEE-----EEEee--cC
Confidence 95421 11111 1111211 11222 22
Q ss_pred CCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311 606 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 683 (1102)
Q Consensus 606 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1102)
...|+.+.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 33688899999 57889999999999999865441
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311 684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 763 (1102)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 763 (1102)
.+.-|.+.. +++.+.. |-|
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~~---------------pp~------------ 166 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVID---------------PPG------------ 166 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhccC---------------Ccc------------
Confidence 111222221 0000000 000
Q ss_pred EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC---CCeEEEEeCC------eEEEEEc
Q 001311 764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM 834 (1102)
Q Consensus 764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d---~~~las~sdg------~I~iwd~ 834 (1102)
.+..+..|+.|++. ..+||+|+|. .+.||..
T Consensus 167 ----------------------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 167 ----------------------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred ----------------------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 02233334444432 2366777643 6788876
Q ss_pred CCC----ceeeeecCCCCCeeEEEEecCCC---cEEEEEeCCCcEEEEEeecc--------------------eeeeeec
Q 001311 835 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK 887 (1102)
Q Consensus 835 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~--------------------~~~~~l~ 887 (1102)
... ..+.++.+|..+|+.++|.|.-| .+||+++.|| |+||.+... +.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 532 34566889999999999999544 4899999999 999998731 2445678
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
+|.+.|+.+.|.-.|..|++.|.||.||+|...
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 899999999999999999999999999999754
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5e-20 Score=179.72 Aligned_cols=275 Identities=12% Similarity=0.177 Sum_probs=207.2
Q ss_pred CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311 335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
.|.....++.|.. ..|+.||+.|.+ ||+|..||.|.|||+.|...-. ++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3555666777666 899999999996 9999999999999998865332 689999999999
Q ss_pred EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~ 494 (1102)
+||+||+.|++++.|..|++||+..|.+++.+ ....+|+.+.|.|-.....++ .-.+..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999977643 246899999999987763444 334444555555543221 111
Q ss_pred -cCCCC--eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCC-CeeeEEEEccCCceeeeccccCc------
Q 001311 495 -GHEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRS------ 564 (1102)
Q Consensus 495 -~h~~~--v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~------ 564 (1102)
...+. +.+-+-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++....+..
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 11111 111111246778999999999999999999988887776665 77888888888885444333322
Q ss_pred --------------------------eeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311 565 --------------------------LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 617 (1102)
Q Consensus 565 --------------------------i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 617 (1102)
-.+++|+.+|.++++++ .-..++||.-..|.+++.+.+..+ .....+.|+|-
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp~ 304 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHPV 304 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccccc
Confidence 23478999999998876 467899999999999999977653 24667889998
Q ss_pred CCEEEEEECCCcEEEEEccCC
Q 001311 618 GCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 618 ~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
...+++- ..|.+++|.....
T Consensus 305 rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeeeec-cCCceEEEEeecc
Confidence 8888777 6799999986543
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.5e-20 Score=195.78 Aligned_cols=323 Identities=13% Similarity=0.258 Sum_probs=231.5
Q ss_pred eeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC--EEEEEECCCcEEE
Q 001311 555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKI 632 (1102)
Q Consensus 555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i 632 (1102)
.++.||. +.+.++..+|.|.+|++|+.||+|+||.+.+|.++.++...+. |.|++|+|.+. .|+++.. +.+.|
T Consensus 394 lvyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEec-CceEE
Confidence 3445554 4889999999999999999999999999999999999987654 99999999654 4555544 34666
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccc----c
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----E 708 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 708 (1102)
.+..-|.+..... +. ..+.+ .
T Consensus 469 vnp~~G~~~e~~~---t~----------------------------------------------------ell~~~~~~~ 493 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP---TK----------------------------------------------------ELLASAPNES 493 (733)
T ss_pred eCccccchhhhcc---hh----------------------------------------------------hhhhcCCCcc
Confidence 6654442111100 00 00110 1
Q ss_pred cCCCccceEecccCCCCC--ccccccCCCcccccceEEEEEccCCceEEEeecC---ceEEeeeccccccCCCCcccccc
Q 001311 709 ESNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASV 783 (1102)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~ 783 (1102)
..+..+..|.-....... .+..+ .|...|..+.|+..|.+|++...+ ..+.|+++.....
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------- 558 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------- 558 (733)
T ss_pred CCcccceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------
Confidence 122345556544222111 12222 277899999999999999988764 5677776532211
Q ss_pred cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE
Q 001311 784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 863 (1102)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l 863 (1102)
. ..+.. ..+.|.++.|.|...++++++...|+|||+..+..++.+......|..++++| .|.-|
T Consensus 559 ------------Q-~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl 622 (733)
T KOG0650|consen 559 ------------Q-SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL 622 (733)
T ss_pred ------------c-Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence 1 11111 45678999999999999999999999999999888888888888899999999 88888
Q ss_pred EEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCC
Q 001311 864 AIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 942 (1102)
Q Consensus 864 asg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1102)
+.|+.|+.+..||+.- .+..+++..|...|++|+|++.-.++++|+.||++.|+--.-... ..+
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D-------l~q-------- 687 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND-------LLQ-------- 687 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh-------hhc--------
Confidence 8999999999999975 467788999999999999999999999999999999985321100 000
Q ss_pred CcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCC----CCeeEEEEcCCCcEEEEEeCCCeEEEE
Q 001311 943 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1010 (1102)
Q Consensus 943 v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~----~~v~~l~~spd~~~l~s~s~Dg~I~vw 1010 (1102)
+-..+..-...+|. ..|..+.|.|..-+|++++.||+|++|
T Consensus 688 ---------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 ---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---------------------------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 00000011112443 348999999999999999999999998
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.4e-22 Score=214.75 Aligned_cols=232 Identities=16% Similarity=0.250 Sum_probs=203.3
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|...|.++.|++ +..+|+.|+.+|+|++||+..++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 777788888777888999998 78888999988888888999999999999999 8999999999999999999999999
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 962 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~ 962 (1102)
++|.+|...+.+|.|+|-+.+.++++.|..+++||+.... +.....+|. ..+..+.|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 9999999999999999999999999999999999998522 445555554 378899999999999995 6699
Q ss_pred EEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEE
Q 001311 963 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1042 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 1042 (1102)
++|||...|+....|. .|...+.++.|.|..-++++|+.|++|++||+++.+.+...... ..+ |. +..
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999887 78999999999999999999999999999999999988766522 222 55 899
Q ss_pred ecCCCCCEEEEEecCC
Q 001311 1043 AHPQEPNEFALGLSDG 1058 (1102)
Q Consensus 1043 f~p~d~~~l~s~~~Dg 1058 (1102)
|.| ++..+.+|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 677877776554
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.1e-19 Score=184.13 Aligned_cols=172 Identities=20% Similarity=0.232 Sum_probs=140.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
...+|..+.|.++....+|||+.|..|+||.++.+..-.. . ....-...+..|...|+++.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------~-~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------D-MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------c-eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 4578999999998874599999999999999876432210 0 00111226899999999999999999999
Q ss_pred EEECCCeEEEEEcc--------C-----CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311 425 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 491 (1102)
Q Consensus 425 s~~~d~~v~vwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~ 491 (1102)
+|+.+|.|.+|... + .+.....+.+.+|...|..++|++|+. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222234456889999999999999999 89999999999999999999999
Q ss_pred EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311 492 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 492 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1102)
.+.+|...|..++|. +-++++++-+.|...+.+.+..
T Consensus 160 ~~~dh~~yvqgvawD--pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD--PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eccccccccceeecc--hhhhhhhhhccCcccceeeeee
Confidence 999999999999985 4448999999998776665543
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.3e-22 Score=214.17 Aligned_cols=235 Identities=12% Similarity=0.305 Sum_probs=204.3
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
..|...|.|+..-..++ .+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++..+
T Consensus 25 ~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERL 84 (825)
T ss_pred hhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhh
Confidence 34888899998866677 59999999999999986543332 37899999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
|++|+.+|+|++||++.++.++ +|.||...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..
T Consensus 85 laagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred hcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEE
Confidence 9999999999999999988776 6899999999999999999 7899999999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+.| .++|.++++|+.|.++++||+..++....|..|...+.++.|.|. .-.+++|+.
T Consensus 160 l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~---------------------e~Lla~Gs~ 216 (825)
T KOG0267|consen 160 LRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL---------------------EVLLAPGSS 216 (825)
T ss_pred Eee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCch---------------------hhhhccCCC
Confidence 997 567799999999999999999998888888888776666555444 346788999
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 627 (1102)
|++|++||+++.+.+...... ...|.+..|+|++..+++|...
T Consensus 217 d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 999999999988877776544 5579999999999999988664
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.7e-21 Score=206.65 Aligned_cols=283 Identities=15% Similarity=0.259 Sum_probs=209.3
Q ss_pred CCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEcc-CCceEEEeecCceEEeeeccccccCCCCcc
Q 001311 701 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKA 779 (1102)
Q Consensus 701 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 779 (1102)
+...++.++. ...+++.++.......+..-.-..+.....+..+.|.. +.++|++++.+|.|.+||+...-.
T Consensus 50 ~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------ 122 (839)
T KOG0269|consen 50 DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------ 122 (839)
T ss_pred CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc------
Confidence 3444444443 45667766654443333221100011122334455543 466789999999999999854210
Q ss_pred cccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec
Q 001311 780 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 857 (1102)
Q Consensus 780 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp 857 (1102)
..+ ...+.. |...+.++.|++-. .+|++|+ ||+|++||++...-..++.+....|..++|+|
T Consensus 123 -------------nk~-l~~f~E--H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 123 -------------NKL-LTVFNE--HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred -------------chh-hhHhhh--hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 011 011222 99999999999754 5778888 99999999999888889998888999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC
Q 001311 858 QDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 936 (1102)
Q Consensus 858 ~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 936 (1102)
..+..++++.+.|.+++||++. .++...+.+|.++|.++.|+|++.+|||||.|++|+|||+.+.+......+...
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--- 263 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--- 263 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec---
Confidence 8899999999999999999986 567788999999999999999999999999999999999998776555555444
Q ss_pred CCCCCCCcEEEEccCCcE-EEEE---eCCeEEEEEcCCceEe-eeeccCCCCCCeeEEEEcC-CCcEEEEEeCCCeEEEE
Q 001311 937 TPTAQSDTRVQFHQDQIH-FLVV---HETQLAIFETTKLECV-KQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVF 1010 (1102)
Q Consensus 937 ~~~~~~v~~~~~spdg~~-l~~~---~d~~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~Dg~I~vw 1010 (1102)
.++..+.|-|+..+ ||++ .|..|+|||++---.. .++ ..|...++.++|-. |...|.+++.||+|..-
T Consensus 264 ----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~--~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 264 ----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF--LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred ----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--eccCccccceeccCCCceeeEeecCccHHHHh
Confidence 37899999998665 4442 6889999999754332 233 37899999999965 56678999999998866
Q ss_pred EcCCc
Q 001311 1011 SAANL 1015 (1102)
Q Consensus 1011 d~~~~ 1015 (1102)
.++++
T Consensus 338 ~~kna 342 (839)
T KOG0269|consen 338 LFKNA 342 (839)
T ss_pred hhhcc
Confidence 55544
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=4.8e-20 Score=189.17 Aligned_cols=258 Identities=19% Similarity=0.274 Sum_probs=193.2
Q ss_pred CCCCeeEEEEecCCC-eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCe
Q 001311 345 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 422 (1102)
Q Consensus 345 h~~~v~~v~~spdg~-~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 422 (1102)
+...|++++|+|... .++|+|...|.|-+||+.+.+...... ..+..|.++|.+|.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 789999999999876 789999999999999996443322211 15789999999999999 6778
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee-eEEeecCCCCeE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 501 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~-~~~~~~h~~~v~ 501 (1102)
+.+.+.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||++++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999988642 22223333445678888998888 577777777999999998665 566777999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee----eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
+++++|-.. .+|+|+|.|++.+|||++...... ....|... +.++.|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs---------------------V~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS---------------------VNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccce---------------------eeeeEEcCCCCce
Confidence 999987654 789999999999999998754332 22233444 4445555555569
Q ss_pred EEEeCCCeEEEEECC----CcceEEEEcCCCCC---CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311 578 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 643 (1102)
++.+.|..|+|||.. .......+...... -......|.|+..++++|-.-..|-|+|-..+ +.+.
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~ 456 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVC 456 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEee
Confidence 999999999999983 33334444322111 12345789999999999999889999987666 4333
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.9e-19 Score=174.23 Aligned_cols=260 Identities=13% Similarity=0.233 Sum_probs=193.4
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CC
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG 420 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 420 (1102)
.+|.+-|.|+.|.+-|++ +|+++.|++|.|||......--.. ....+.|.+.|..+.|.+ =|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCcccc
Confidence 358899999999999998 999999999999997543221110 013568999999999977 69
Q ss_pred CeEEEEECCCeEEEEEcc------CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee----
Q 001311 421 SLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---- 490 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~---- 490 (1102)
+.+|+++.|+++.||.-. .+.......++......|+.|.|.|....+.+++++.||.+|||+.-....+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 999999999999999752 1222334446777888999999999988779999999999999987654322
Q ss_pred --EEee-------cCCCCeEEEeeeecCC-ccEEEEEeCC-----CeEEEEEcCCCC----CeeeecCCCCeeeEEEEcc
Q 001311 491 --YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSA 551 (1102)
Q Consensus 491 --~~~~-------~h~~~v~~v~~~~~~~-~~~l~s~s~d-----g~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~ 551 (1102)
..++ .+..+-.|+.|+++.- ..+|+.|+.+ +.++||...... ...++..+...|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2232 3566677888875432 2467777765 478899876544 2335667888899999988
Q ss_pred CCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-----------------eEEEEc-CCCCCCCcCeEE
Q 001311 552 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIR 613 (1102)
Q Consensus 552 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~ 613 (1102)
+--+.+ ..|++++.|| |+||++.... .+..+. ..+|...|..+.
T Consensus 234 n~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 234 NIGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred ccCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence 744222 3588899999 9999987311 112221 234455899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcc
Q 001311 614 FNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 614 ~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
|+-.|..|++.+.||.||+|...
T Consensus 296 wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 296 WNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeeeEEeecCCCceeeehhhh
Confidence 99999999999999999999754
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=7.6e-20 Score=182.98 Aligned_cols=269 Identities=15% Similarity=0.245 Sum_probs=192.8
Q ss_pred CccceeeccCCCCeeEEEEecCC-CeEEEEEecCCeEEEEeCCCCe-eEEeeeeeeeccCCCCccccccccCCCCCCeEE
Q 001311 336 PKTVTRTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 413 (1102)
Q Consensus 336 ~~~~~~~~~h~~~v~~v~~spdg-~~llasg~~d~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1102)
|........|.+.|+.+.-++-| ..++|+=+..|.|.|||+...- .+..-.+.+-+ +...+...+.+|.+.=++
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 44455567799999999988875 4456666778999999985421 11110000001 111222357899999999
Q ss_pred EEEcc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---ee
Q 001311 414 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AK 489 (1102)
Q Consensus 414 l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~---~~ 489 (1102)
|+||| .-..|++|..-+.|++|...+|.-......+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 99999 3345788888889999999988765444567889999999999999877 8999999999999999998 34
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC---CCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.- ..+..+..|..+|+++.|+|...
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------------ 360 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------------ 360 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------------
Confidence 444 7899999999996444 49999999999999999863 34456666777777777766544
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcce----------------EEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCc
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNG 629 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~ 629 (1102)
..|+++|.|..|.+||+....- -+.+-.|.+...+..+.|++.- .+|++.+.||.
T Consensus 361 --------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 361 --------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred --------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 4588889999999999853221 0112224444568889999853 45666666654
Q ss_pred EEEE
Q 001311 630 IKIL 633 (1102)
Q Consensus 630 i~iw 633 (1102)
.||
T Consensus 433 -nVf 435 (440)
T KOG0302|consen 433 -NVF 435 (440)
T ss_pred -eEE
Confidence 444
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=2.7e-17 Score=192.06 Aligned_cols=371 Identities=25% Similarity=0.417 Sum_probs=269.9
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe-eEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEE-c
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 417 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 417 (1102)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 35569999999999999996 8888899999999998876 3321 33322 47777777 8
Q ss_pred cCCC-eEEEEEC-CCeEEEEEccC-CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCeeeEEe
Q 001311 418 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 493 (1102)
Q Consensus 418 pdg~-~las~~~-d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~~~~~~~~~~ 493 (1102)
+++. +++..+. |+.+.+|+..+ ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999987 43333 4788999999999999999 6777775 999999999999999999
Q ss_pred ecCCCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311 494 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 571 (1102)
.+|...|.++.|. +++. .+++++.|+.|++||...+.... .+..+.... . ..|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~---------------------~~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V---------------------SSFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e---------------------EeEC
Confidence 9999999999987 5555 55666999999999877444433 233333221 1 1556
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311 572 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 650 (1102)
Q Consensus 572 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 650 (1102)
+++..+++++.|+.+++|+...... +..+..+ ...+.++.|.|++..+++++.|+.+.+|+..+.. ......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence 6666788999999999999987665 4444333 4578899999988888889989889999765541 111000
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311 651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 730 (1102)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 730 (1102)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311 731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810 (1102)
Q Consensus 731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~ 810 (1102)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222344
Q ss_pred EEEEecCCCeEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEE-EeCCCcEEEEEeecceeeeeec
Q 001311 811 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 811 ~l~~s~d~~~las~-s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~~~~~~~l~ 887 (1102)
.+.+.+++..++.+ . |+.+.+|+............... +..+.+.+ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 44442222333433 3 66677777776652222322222 88899988 6 55554 8899999999999888777766
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
.+...+....+++++..+++++.++.+++|+...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547788999999999999999999999999877
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=190.08 Aligned_cols=266 Identities=12% Similarity=0.139 Sum_probs=191.3
Q ss_pred CeeEEEEecC-------CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCC---ccccccccCCCCCCeEEEEEc
Q 001311 348 SPMSMDFHPV-------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS---MPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 348 ~v~~v~~spd-------g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~s 417 (1102)
..-|++|... |+| +|.|+.|..|.|||+.-...+. -.+.+-.+.... .........+|++.|..++|+
T Consensus 175 fPLC~ewld~~~~~~~~gNy-vAiGtmdp~IeIWDLDI~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNY-VAIGTMDPEIEIWDLDIVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cchhhhhhhcCCCCCCCcce-EEEeccCceeEEeccccccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 4466666432 565 9999999999999985321111 000000000000 001112345899999999999
Q ss_pred cC-CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311 418 PD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 496 (1102)
Q Consensus 418 pd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h 496 (1102)
.+ ...||+||.|.+|++||+.+|++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+........-..
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~ 328 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKF 328 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEe
Confidence 84 6689999999999999999999765 46789999999999999887 8999999999999999954333222124
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
.+.|..+.|.+... ..++++..||+|+-+|++.. +++.++..|...|.+++++..-. +
T Consensus 329 ~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~ 387 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------G 387 (463)
T ss_pred ccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------c
Confidence 56788899976554 57888899999999999987 67778888988888888877654 5
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCCcc
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
++++++.|+.|++|++............-..+...|.++.|+- .+++.|+..+.+++||+.+...
T Consensus 388 ~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 6889999999999998754432222111112235567777754 4677788888899999987733
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.1e-19 Score=178.64 Aligned_cols=300 Identities=15% Similarity=0.215 Sum_probs=204.2
Q ss_pred cccccceEEEEEcc----CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311 736 NLRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 811 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 811 (1102)
..|..+|..++|.+ +...+++......+.+|+..... +..+........+......
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfyt 94 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYT 94 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEE
Confidence 34778888898874 22234444444467777653211 1111111112236666777
Q ss_pred EEEecCC----CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311 812 FALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 812 l~~s~d~----~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 886 (1102)
++|+-|- -++|+++ -|.|+|.|+.++++...+.+|...|+.+.|.|++.++|++++.|..|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 7777543 3677776 7999999999999999999999999999999987899999999999999999999999887
Q ss_pred ---ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccccee-------------eeecCCCCCC-------CCCCC
Q 001311 887 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR-------------FLQIPTGRTP-------TAQSD 943 (1102)
Q Consensus 887 ---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~~-------~~~~v 943 (1102)
.+|.+.|.++.|+.+|.+++++|.|.+|++|++...+..... +......|.+ ....|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 579999999999999999999999999999999853321100 0000001110 00122
Q ss_pred cEEEEccCCcEEEE-EeCCeEEEEEc-CCceEe-------------eeeccCCCCCCeeEEE--EcCCCcEEEEEeCCCe
Q 001311 944 TRVQFHQDQIHFLV-VHETQLAIFET-TKLECV-------------KQWVPRESSAPITHAT--FSCDSQLVYACFLDAT 1006 (1102)
Q Consensus 944 ~~~~~spdg~~l~~-~~d~~i~iwd~-~~~~~~-------------~~~~~~~h~~~v~~l~--~spd~~~l~s~s~Dg~ 1006 (1102)
.++.|- |.++.+ +.++.|..|.. +-.+.+ ..+.. ....|+-+. |.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 222221 567777 78889999987 222221 11211 133455554 4566889999999999
Q ss_pred EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
|++||++..+....-. +.+...+..|. ..+|+. |+.+|+..++|++|.-||.-
T Consensus 331 v~vwdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999887742111 11111223344 788988 78999999999999999864
No 158
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.7e-20 Score=200.97 Aligned_cols=270 Identities=12% Similarity=0.192 Sum_probs=197.1
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 424 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 424 (1102)
.....+|...++-..+++.|- ....|+.+....... .+.+.... -..-...+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 456678888888776444443 456666664432111 01110000 001112455677876 788999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~ 504 (1102)
+++..|.|.+||+.....-+....+..|+..|+++.|++-... +|++||.||+|++||++..+-..++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333368899999999999998887 899999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311 505 PHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 583 (1102)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 583 (1102)
|++.. +..++++...|.+++||++... ....+..|.+.|.++.|+| ++.+|++||.|
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP---------------------nr~~lATGGRD 241 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP---------------------NREWLATGGRD 241 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC---------------------CCceeeecCCC
Confidence 98765 5799999999999999998754 4456666666555555555 45689999999
Q ss_pred CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEE--CCCcEEEEEccCCccceeeccccccccc
Q 001311 584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGIRLLRTFENLAYDAS 653 (1102)
Q Consensus 584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 653 (1102)
+.|+|||+.+++.......+ ....+.++.|-|+.. .|++++ .|-.|+|||++...-+...+..|...+.
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 99999999866543322222 134688999999655 455554 3778999999998888888888876544
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=5.3e-19 Score=182.55 Aligned_cols=293 Identities=12% Similarity=0.178 Sum_probs=213.5
Q ss_pred cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceE-EEeecCceEEeeeccccccCCCCcccccc
Q 001311 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV 783 (1102)
Q Consensus 705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 783 (1102)
+..++....+++||+............. ....+.++.|......+ +..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 3344555789999998766555444332 23348889998777522 3334578899886421
Q ss_pred cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001311 784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 862 (1102)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 862 (1102)
.++.+...... ....-.|++......|+++|+ .+.|+|||++...+.+.+++|...|+++.+.- ...+
T Consensus 67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 11111111111 122445555556668999998 89999999998777888999999999999998 7889
Q ss_pred EEEEeCCCcEEEEEeecceeeeeeccccc-cceeEEEecCCCE-EEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCC
Q 001311 863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 940 (1102)
Q Consensus 863 lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 940 (1102)
||+++..|.|.|..+.++.....|...++ .|.-+.|++..+. |.+++.+|.|.+||+.+... .......|.
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs--- 208 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS--- 208 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence 99999999999999999887777765434 4558899998765 56789999999999987443 233344444
Q ss_pred CCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce-e
Q 001311 941 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1017 (1102)
Q Consensus 941 ~~v~~~~~spdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~-~ 1017 (1102)
.+...++|+|....|++ |.|..|.+||+...+....+.+ ..+...++|+++|.+|+.|+..|.|..||+...+ .
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 37789999998776665 6999999999987776666654 5689999999999999999999999999997654 4
Q ss_pred EEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311 1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus 1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
+..+. .|... |. +++|-|.
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~s 304 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQPS 304 (673)
T ss_pred ceEee-------ecccc-ee--EEEeeec
Confidence 44433 33344 55 7888873
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.3e-19 Score=178.12 Aligned_cols=259 Identities=19% Similarity=0.240 Sum_probs=194.5
Q ss_pred CCCCeeEEEEecC---CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC-C
Q 001311 345 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G 420 (1102)
Q Consensus 345 h~~~v~~v~~spd---g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 420 (1102)
|...-..++|+-| |.-++|.|+.-|.|+|-|+.+++... .+.+|.+.|+.+.|.|+ .
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------------~~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------------NYRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------ceeccCccchhhhcCCCCC
Confidence 6667778888764 45578888899999999999988776 38899999999999995 5
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee----------
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---------- 490 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~---------- 490 (1102)
++|+++|.|.+|++|++++..++..+.-+.||.+.|.++.|+.+|. +++++|.|.++++|++...+..
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7899999999999999999999988778889999999999999999 8999999999999999843110
Q ss_pred ---------------E---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC-CCCCeeeecCCCCeeeEEEEcc
Q 001311 491 ---------------Y---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSA 551 (1102)
Q Consensus 491 ---------------~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~ 551 (1102)
- +-.-|...|.|+.|.. +++++-|.++.|..|..- -.+.......+....+-+.-
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~-- 300 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE-- 300 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeE--
Confidence 0 1124677777777632 589999999999999762 22221111111111110000
Q ss_pred CCceeeeccccCceeE--EEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311 552 DGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTND 627 (1102)
Q Consensus 552 ~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 627 (1102)
.......++- .++++-++.|+.|...|.|++||++...+ ..++........|...+|+.|+..|+...+|
T Consensus 301 ------~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 301 ------FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred ------eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 0001113333 45567778899999999999999987665 2334434445578899999999999999999
Q ss_pred CcEEEEEcc
Q 001311 628 NGIKILATS 636 (1102)
Q Consensus 628 g~i~iwd~~ 636 (1102)
++|.-||..
T Consensus 375 ~~Vwrwdrv 383 (385)
T KOG1034|consen 375 GTVWRWDRV 383 (385)
T ss_pred CcEEEEEee
Confidence 999999854
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.6e-16 Score=185.48 Aligned_cols=368 Identities=22% Similarity=0.390 Sum_probs=269.0
Q ss_pred eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecCCC-CeEEEeeeecCCcc-EEEEEeC-CCeEE
Q 001311 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK 524 (1102)
Q Consensus 449 l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h~~-~v~~v~~~~~~~~~-~l~s~s~-dg~i~ 524 (1102)
+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567999999999999999 78888899999999998887 7777776443 77777765 55555 5555444 99999
Q ss_pred EEEcCC-CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC-CCeEEEEECCCcceEEEEcC
Q 001311 525 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 525 ~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 602 (1102)
+|+... ......+..+...+..+.|++++ ..+++++. |+.+++|+...+..+..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG---------------------KLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC---------------------CEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 999987 55555666666666666655555 45777775 99999999998888888876
Q ss_pred CCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCCcccee-ecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311 603 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 680 (1102)
Q Consensus 603 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1102)
+ ...+.+++|+|++. .+++++.|+.|++||...+ .... .+.+
T Consensus 197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~--------------------------------- 240 (466)
T COG2319 197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG--------------------------------- 240 (466)
T ss_pred C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC---------------------------------
Confidence 4 44799999999998 5555589999999975533 1111 0000
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311 681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 760 (1102)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 760 (1102)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce
Q 001311 761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 839 (1102)
Q Consensus 761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~ 839 (1102)
|.... ...|++++.++++++ |+.+++|+......
T Consensus 241 --------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 241 --------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred --------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 22221 115556665555555 67777777765543
Q ss_pred -eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec--cccccceeEEEecCCCEEEEE-cCCCcEE
Q 001311 840 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC 915 (1102)
Q Consensus 840 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~ 915 (1102)
...+.+|...+.++.|+| ++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.
T Consensus 276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 344456788999999999 77788889999999999988877666665 788889999994332566655 6889999
Q ss_pred EEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC
Q 001311 916 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 993 (1102)
Q Consensus 916 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp 993 (1102)
+|++.... ........ ..+..+.+++ ...... ..++.+.+|+............. ...+....+++
T Consensus 355 ~~~~~~~~----~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 422 (466)
T COG2319 355 LWDLRTGK----PLKTLEGH-----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFSP 422 (466)
T ss_pred eeecCCCc----eeEEecCC-----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEECC
Confidence 99998854 11111111 1267888888 544443 47889999999998887766521 17899999999
Q ss_pred CCcEEEEEeCCCeEEEEEcCC
Q 001311 994 DSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 994 d~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
++..+++++.++.+++|+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEecCCCcEEEEeccC
Confidence 999999999999999999988
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=8.4e-19 Score=181.08 Aligned_cols=210 Identities=17% Similarity=0.281 Sum_probs=167.9
Q ss_pred CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCe
Q 001311 750 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 828 (1102)
Q Consensus 750 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~ 828 (1102)
...+++++|..++++|||+. .+++.+.+.+ |...|+++.++-.+.|||+++ .|.
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~-----------------------~kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLR-----------------------AKLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred cceeeeccCcCceeeehhhH-----------------------HHHHhhhccC--CcceeEEEEecCCcceeEEeccCCc
Confidence 34778999999999999873 2344444555 999999999999999999999 688
Q ss_pred EEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-ccccccceeEEEecCC-CEE
Q 001311 829 ISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHAL-NVL 905 (1102)
Q Consensus 829 I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~-~~l 905 (1102)
|.|..+.++....+|....+ .|.-+.|+|....+|.+++++|.|.+||+.....+..+ ..|+.+...|+|+|.. .+|
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 99999999888777775534 46689999966678889999999999999876666554 6799999999999975 678
Q ss_pred EEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE-eeeeccCCCC
Q 001311 906 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-VKQWVPRESS 983 (1102)
Q Consensus 906 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~h~ 983 (1102)
|+.|.|..|.+||+........ +... .+...++|+++|.+|++| ..|.|..||++..+. +..+ +.|.
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~----l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--sah~ 293 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDR----LTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--SAHD 293 (673)
T ss_pred EEecccceEEEeecccccccce----eeec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe--eecc
Confidence 8999999999999986433221 1112 367899999999999997 889999999986554 3333 3788
Q ss_pred CCeeEEEEcCCC
Q 001311 984 APITHATFSCDS 995 (1102)
Q Consensus 984 ~~v~~l~~spd~ 995 (1102)
..|++++|-+..
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 899999997654
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=9.3e-19 Score=179.82 Aligned_cols=316 Identities=12% Similarity=0.152 Sum_probs=226.2
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC----CCeeeecCCCCeeeEEEEccCCceee
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL----GSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
.|+.+-....+.+-+.+.|++++|+|..+..++++|..-|.|-+||+.+. .....+..|..+|.++.|+|...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--- 247 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--- 247 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh---
Confidence 34444455556667889999999999998889999999999999999632 23445677777888888887765
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
..+++.+.||+|++-|++.+.....+........+.++.|+.+...++.+..-|.+.+||.++
T Consensus 248 -----------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 248 -----------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred -----------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 579999999999999998776444444323334567788888888888888888999999998
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
+......+.-|...+... ++.|. ...++++++.|++.++|
T Consensus 311 ~~s~~~~~~lh~kKI~sv------~~NP~----------------------------------~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSV------ALNPV----------------------------------CPWFLATASLDQTAKIW 350 (498)
T ss_pred CCccchhhhhhhccccee------ecCCC----------------------------------CchheeecccCcceeee
Confidence 866566665555433322 22222 25678999999999999
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 797 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1102)
|+......... .+. ...|...|.++.|||.+-.|++.+.|..|+|||..- +--|+...+....
T Consensus 351 D~R~l~~K~sp-~ls--t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 351 DLRQLRGKASP-FLS--TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPH 413 (498)
T ss_pred ehhhhcCCCCc-cee--cccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeec
Confidence 99976654431 111 134899999999999988899999999999998620 0112222222211
Q ss_pred cccCCCCCCC--CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC-CeeE-EEEecCCCcEEEEEeCCCcE
Q 001311 798 NDVTDSNPEE--AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSI 872 (1102)
Q Consensus 798 ~~~~~~~~~~--~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~-~i~~-l~~sp~d~~~lasg~~dg~v 872 (1102)
.-. +.. ...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|-+..++|-|+..|.|
T Consensus 414 n~~----t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 414 NNR----TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKI 489 (498)
T ss_pred cCc----ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceE
Confidence 100 111 133467999999999998 67899999998888877654433 4554 47999444467767778899
Q ss_pred EEEEee
Q 001311 873 QIYNVR 878 (1102)
Q Consensus 873 ~vwd~~ 878 (1102)
+||--+
T Consensus 490 ~vft~k 495 (498)
T KOG4328|consen 490 YVFTNK 495 (498)
T ss_pred EEEecC
Confidence 998644
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=5.7e-19 Score=176.79 Aligned_cols=219 Identities=21% Similarity=0.335 Sum_probs=162.6
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
+...-+|...=.+++|||--.--|++|..-+.|++|...+|.-... ..-+.+|+..|-.|+|||
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLqWSp 267 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQWSP 267 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------CccccccccchhhhccCC
Confidence 3344459999999999993322388998889999999988754321 124678999999999999
Q ss_pred -CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC---CeeeEEee
Q 001311 419 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIFE 494 (1102)
Q Consensus 419 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~---~~~~~~~~ 494 (1102)
....||+||.||+|+|||++.+.....+. .+.|.+.|+.|.|+..-. +|++|+.||+++|||++. ++++..|+
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 56789999999999999999984433332 478999999999999888 899999999999999984 67889999
Q ss_pred cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeee-----ecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
-|..+|+++.|++..+ ..|++++.|.+|.+||+......-. ..+-..-...+-|-..| ...+.-+.
T Consensus 345 ~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG--------Qke~Kevh 415 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG--------QKEVKEVH 415 (440)
T ss_pred eccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc--------hhHhhhhe
Confidence 9999999999998766 5788889999999999975433111 01100111122222222 23555666
Q ss_pred EcCCC-CEEEEEeCCCe
Q 001311 570 FDTTK-NRFLAAGDDFS 585 (1102)
Q Consensus 570 ~~~~~-~~l~~~~~dg~ 585 (1102)
|+++- .++++.+.||.
T Consensus 416 WH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eccCCCCeEEEecccce
Confidence 76654 35677777763
No 165
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=181.64 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=129.9
Q ss_pred EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525 (1102)
Q Consensus 447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~ 525 (1102)
.+|.||++.|+|+.|+.||. +|++|++|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888877 68999999999999888899999999999999
Q ss_pred EEcCCCCC----------eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q 001311 526 WLYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 595 (1102)
Q Consensus 526 wd~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 595 (1102)
+|+...+. ...+.-|...|..++..|++. +.+.++++||+|+-+|++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCc
Confidence 99985222 112223333444444444433 678999999999999998632
Q ss_pred eE-EE-------EcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEcc
Q 001311 596 LL-TS-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 596 ~~-~~-------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 636 (1102)
.- .. ...........|+.++| +..+|++|+.|-..++||.+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 11 00 01111223467899999 67789999999999999964
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1e-18 Score=179.10 Aligned_cols=196 Identities=16% Similarity=0.235 Sum_probs=154.6
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEE------------------eeccccCEEEEEEcCCCCeeEEEEecCCCcEE
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1102)
-|+|+|.|+.|..|.|||+.--..+.+... ..+|++.|.+++|+..-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 478999999999999999863322222222 2379999999999998887 899999999999
Q ss_pred EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311 481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 560 (1102)
Q Consensus 481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 560 (1102)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998654 47999999999999999985322211111122344444444333
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-ceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCC
Q 001311 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
..++++..||+|+-+|++.. +++.++..|.. .|.++++++ ...++++++.|+.|++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 45778889999999999875 88999988866 899999998 4567899999999999997544
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.9e-17 Score=162.53 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=170.1
Q ss_pred cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC---CCeeEEEEecCCCeEEEEe
Q 001311 749 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE---EAVPCFALSKNDSYVMSAS 825 (1102)
Q Consensus 749 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~i~~l~~s~d~~~las~s 825 (1102)
|+..++++.+.+.-|.+||.-+++...... ...|. ....+++|+|||..|.+|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~-----------------------~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR-----------------------AYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh-----------------------hhhhHHhhhhheeEEecCCCCeEeecc
Confidence 677788888889999998864332211110 01122 2356899999999999999
Q ss_pred CCeEEEEEc-CCCcee--ee-e----cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEE
Q 001311 826 GGKISLFNM-MTFKTM--AT-F----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 897 (1102)
Q Consensus 826 dg~I~iwd~-~~~~~~--~~-~----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 897 (1102)
...|++||+ +.|..- .. + .+..+-|.+++|+|.+.+.+|+|+....+-||.-..+..+..+-+|.+.|+.++
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 999999999 343321 11 1 223567899999998888999999999999999888999999999999999999
Q ss_pred EecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC-ceEe
Q 001311 898 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 974 (1102)
Q Consensus 898 ~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~-~~~~ 974 (1102)
|.+||+.|.+|+. |-.|.+||+..... ++-.+..|....+.-.-....|+|++|+++ .+|.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999985 67899999987443 222233333211122234556899999997 999999999998 6655
Q ss_pred eeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311 975 KQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus 975 ~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
..+. .|+..++.+++.|-=.++|+++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5544 678999999999997788887754
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=5.2e-18 Score=161.89 Aligned_cols=308 Identities=14% Similarity=0.203 Sum_probs=196.9
Q ss_pred eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCcee
Q 001311 488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
.+...+++|.+.|++++|. .+ .+|++|..-|.|++|++.+......+. .+...|+.+...|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fq--a~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQ--AN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhc--cc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 3456778999999999984 33 469999999999999999988777776 4455666666666544
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC-cEEEEEccCCccceeec
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 645 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 645 (1102)
+.+-+.|+.+.+|++..+..+..-. ..++++.|.+.. +...+... .+-.++-+.... .+..
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 8888999999999998765543322 124444444321 11111110 111111111100 0000
Q ss_pred ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCC
Q 001311 646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 725 (1102)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 725 (1102)
. ++....+++-+-.
T Consensus 132 D-------------------------------------------------------------~g~~tqv~i~dd~----- 145 (323)
T KOG0322|consen 132 D-------------------------------------------------------------GGDTTQVQIADDS----- 145 (323)
T ss_pred c-------------------------------------------------------------cCccceeEccCch-----
Confidence 0 0000011111100
Q ss_pred CccccccCCCcccccceEEEEEcc-CCc--eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 726 NQCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 726 ~~~~~~~~~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
.....+.+.+..+.. +++ .+++|.++|.+.+||++.++.. .+...-..+....
T Consensus 146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~-- 201 (323)
T KOG0322|consen 146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPN-- 201 (323)
T ss_pred ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccch--
Confidence 011233444443221 222 3566677899999998765221 1111111111112
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC--Cce--eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
..|..+|.++.+.+.-..=++|+ +..+..|+++. +.+ ..++......|..+.+-| |++++|+++.|+.||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 23889999999987666666666 77788888763 222 222333355688999999 9999999999999999999
Q ss_pred ecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
++...+..++-|++.|.+++|+||...+|.++.|++|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.7e-19 Score=200.92 Aligned_cols=256 Identities=13% Similarity=0.164 Sum_probs=198.3
Q ss_pred ccCCCCeeEEEEecCCCe---EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 343 LNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~---llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
+.-..+-+.++|.+.|.. |+|.|..||.|.+||...- +... . .........|.+.|..+.|++.
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~----------~-~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANA----------S-EEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCc----------c-hHHHhhhcccCCceeeeecccc
Confidence 334567789999998876 6999999999999998652 1100 0 0011246789999999999996
Q ss_pred CC-eEEEEECCCeEEEEEccCCceeeeEEEe--eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311 420 GS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 496 (1102)
Q Consensus 420 g~-~las~~~d~~v~vwd~~~~~~~~~~~~l--~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h 496 (1102)
+. +||+|+.||.|.|||+..-+.-- .. ..-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~ 203 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDT 203 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccC
Confidence 55 99999999999999998744221 12 124568999999988777 7999999999999999999888777665
Q ss_pred CC--CeEEEeeeecCCccEEEEEeCC-C--eEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311 497 EA--PVYSVCPHHKENIQFIFSTALD-G--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 570 (1102)
Q Consensus 497 ~~--~v~~v~~~~~~~~~~l~s~s~d-g--~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 570 (1102)
.+ .+..+.|+++... .|++++.| + .|.+||++... ....+..|...|.++.|++.+.
T Consensus 204 ~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~---------------- 266 (1049)
T KOG0307|consen 204 PGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP---------------- 266 (1049)
T ss_pred CCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------
Confidence 54 4677899987764 45555544 3 69999998654 4455667777777777776654
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCC
Q 001311 571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.++++++.|+.|.+||.++++.+..+...+ .++..+.|.|.. ..+++.+.||.|.|+.+...
T Consensus 267 ----~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 ----RLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ----hhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 578999999999999999999999998643 489999999955 48889999999999998765
No 170
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=163.16 Aligned_cols=406 Identities=14% Similarity=0.112 Sum_probs=239.1
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECC
Q 001311 351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 429 (1102)
Q Consensus 351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 429 (1102)
-.+|||+|+| +|+.+. ..+.|-|.++-+..+. -.--+.|..+.|+.|..++..+ +.|
T Consensus 13 ~c~fSp~g~y-iAs~~~-yrlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSR-YRLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeee-eEEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 3679999997 887765 4888889887655431 1113578889999998887764 778
Q ss_pred CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC
Q 001311 430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 509 (1102)
Q Consensus 430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~ 509 (1102)
+.|.+|++...+-.. .+.....++.+++|||||++ +|.+...|-.|.||.+.+.+....-. -...+..++| .+
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f--~~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAF--HP 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecc-cccCceeEEE--CC
Confidence 999999998876444 35566789999999999987 78888999999999999887754332 2233466776 46
Q ss_pred CccEEEEEeCCCeEEEEEcC---CCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311 510 NIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 586 (1102)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 586 (1102)
+|++.+.++.-...-...+. .-..+..+....-..+ .+.|+|||+.+++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt---------------------gieWsPdg~~laV------- 195 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT---------------------GIEWSPDGNWLAV------- 195 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc---------------------CceECCCCcEEEE-------
Confidence 66777776642111111110 0011112222222333 3455555555554
Q ss_pred EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccc
Q 001311 587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 666 (1102)
Q Consensus 587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1102)
||---...+..+.. .-.+..++|+|.+++|++|+.|+.+|+.+--+- +.+..+- |...
T Consensus 196 --wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-k~f~efl-hl~s--------------- 253 (447)
T KOG4497|consen 196 --WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-KPFGEFL-HLCS--------------- 253 (447)
T ss_pred --ecchhhheeeeeee---ccceeEEEeccccceEEeeccchhhhhhceeee-eehhhhc-cchh---------------
Confidence 44222111222211 124778999999999999999999998765443 2221111 0000
Q ss_pred hhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc-cceEecccCCCCCccccccCCCcccccceEEE
Q 001311 667 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRL 745 (1102)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 745 (1102)
-.|.+ +.++.-.. . ...-...++
T Consensus 254 ------------------------------------------~~dp~~~~~~ke~~-----~---------~~ql~~~cL 277 (447)
T KOG4497|consen 254 ------------------------------------------YHDPTLHLLEKETF-----S---------IVQLLHHCL 277 (447)
T ss_pred ------------------------------------------ccCchhhhhhhhhc-----c---------hhhhccccc
Confidence 00000 00000000 0 000111233
Q ss_pred EEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311 746 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825 (1102)
Q Consensus 746 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s 825 (1102)
.|.|..- ...+|......... ...-+++ ...+... +. .+..-.+.-++|++|..++++-.
T Consensus 278 sf~p~~~---------~a~~~~~se~~YE~-----~~~pv~~---~~lkp~t-D~--pnPk~g~g~lafs~Ds~y~aTrn 337 (447)
T KOG4497|consen 278 SFTPTDL---------EAHIWEESETIYEQ-----QMTPVKV---HKLKPPT-DF--PNPKCGAGKLAFSCDSTYAATRN 337 (447)
T ss_pred ccCCCcc---------ccCccccchhhhhh-----hhcceee---ecccCCC-CC--CCcccccceeeecCCceEEeeec
Confidence 3443321 11111110000000 0000000 0000000 00 11344577799999999999987
Q ss_pred C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCC
Q 001311 826 G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 902 (1102)
Q Consensus 826 d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 902 (1102)
| +.+.+||++..+....+. ...+|.+..|+| ....|+.+.....+++|......++..- +..-.|..++|..+|
T Consensus 338 d~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 338 DKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPG 414 (447)
T ss_pred CCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCC
Confidence 6 569999998866554443 566799999999 7777777777778999997764444432 233679999999999
Q ss_pred CEEEEEcCCCcE
Q 001311 903 NVLVSSGADSQL 914 (1102)
Q Consensus 903 ~~l~s~s~Dg~i 914 (1102)
..++..+.|...
T Consensus 415 ~~i~l~~kDafc 426 (447)
T KOG4497|consen 415 EFIVLCGKDAFC 426 (447)
T ss_pred cEEEEEcCCceE
Confidence 999999999743
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=3e-16 Score=163.96 Aligned_cols=499 Identities=14% Similarity=0.173 Sum_probs=285.1
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc--cC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS--PD 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pd 419 (1102)
...|...|.|+.|+.... ++.+ +.|..+.+|+-.+........+. + .+. ....| +....-- ..
T Consensus 10 k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p--~------df~--pt~~h---~~~rs~~~g~~ 74 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLP--D------DFV--PTDMH---LGGRSSGGGKG 74 (737)
T ss_pred ccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCC--c------ccC--Ccccc---ccccccCCCCC
Confidence 345778888999999887 3444 45566555554333222110000 0 000 00011 0000000 13
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
...++.++.||.+.|-+-... +. .....|.+.|.+-.|+|||. -|+|+|.||.|++|. ++|....++.....+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~r--VE--~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSAR--VE--RSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred cceEEEEcCCceEEEecccch--hh--hhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence 457888999999888775442 22 13678999999999999999 699999999999999 888877777778889
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|.|++|.++.+ +.+++.+ +.+.+=-+.....+.....|.+-|. ++.|++..+.+++
T Consensus 148 v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL---------------------~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 148 IRCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVL---------------------SLSWSTQSNIIAS 203 (737)
T ss_pred eEEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEE---------------------EeecCccccceee
Confidence 99999976654 4555544 4555555555555555566655444 4555555568999
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 659 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1102)
||+|-..++||. .|..+..-..|.+ .|++++|.|+ +.++.++. +++|+=
T Consensus 204 gGED~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~-------------------------- 252 (737)
T KOG1524|consen 204 GGEDFRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS-------------------------- 252 (737)
T ss_pred cCCceeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec--------------------------
Confidence 999999999996 5666666665655 7999999999 55555554 233310
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 739 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 739 (1102)
....
T Consensus 253 ----------------------------------------------------------------------------~p~~ 256 (737)
T KOG1524|consen 253 ----------------------------------------------------------------------------SPRV 256 (737)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0134
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeec-cccccCCCCccc--ccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKW-QRTERNSSGKAT--ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
+.|..++||+||..+++++..|.+.+=-. +..-..-+.+.. ....+.+.|+.++..-..+ ....+....+
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE-----~p~rv~k~sL-- 329 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILE-----FPQRVVKFSL-- 329 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhh-----Cccceeeeee--
Confidence 67889999999999999999887765322 111111111111 1123445555555442211 3444544443
Q ss_pred CCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee--cccc-ccc
Q 001311 817 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHS-KRI 893 (1102)
Q Consensus 817 d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~-~~V 893 (1102)
.-.+|+++....|++|.-......-.+.+....+.-+.-+. ..+++ .+.-+|.+|..+. +..-.. .+.. ...
T Consensus 330 ~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq~e--k~fli--~dgsSi~lytyeg-R~~~np~~Pg~~~dlL 404 (737)
T KOG1524|consen 330 GYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEG-RLHLNPRYPGSQIDLL 404 (737)
T ss_pred ceeEEEEEeccEEEEEecCCccCcEEEeccccchhHhhhhh--hheEE--ecCcEEEEEEecC-ceecCCCCCCcccccc
Confidence 34567777778899998877666555555444333222221 12232 2233566666542 222111 1110 000
Q ss_pred --eeEEEecCCCEEEEE--cCCCcEEEEEc-CCCcccceeeeecCCCC-CCCCCCCcEEEEc----cCCcEEEE-EeCCe
Q 001311 894 --TGLAFSHALNVLVSS--GADSQLCVWSS-DGWEKQKNRFLQIPTGR-TPTAQSDTRVQFH----QDQIHFLV-VHETQ 962 (1102)
Q Consensus 894 --~~l~~s~d~~~l~s~--s~Dg~i~vwd~-~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s----pdg~~l~~-~~d~~ 962 (1102)
..+... ...|+.- .....+.+||. .+++.+. +|+ ......|..++.. ++.+.++. -.++.
T Consensus 405 ~~rtlsLa--ndtLaird~ad~kvlhlFd~istgk~qg-------Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrd 475 (737)
T KOG1524|consen 405 TWRTLSLA--NDTLAIRDNADPKVLHLFDLISTGKRQG-------DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRD 475 (737)
T ss_pred cceeeecc--cceEEeecCCCCeeEEeccCCCCCcccC-------CccccchhhhHHHhHhhccCCCccceEEEEecCCc
Confidence 122222 2234432 22345678887 5544321 111 0111233333332 23344444 35555
Q ss_pred EEEEEcCCceEe-eeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311 963 LAIFETTKLECV-KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus 963 i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
++|=.+++.... +.+.. ...|..++|+. -.-+++|-.|+.+.||-+.+...+
T Consensus 476 l~ItsvKrfgkee~I~Ki---GTmVhtLawnd-ttNiLcglqDt~fsVWy~pn~vyv 528 (737)
T KOG1524|consen 476 LFITSVKRFGKEEEIYKI---GTMVHTLAWND-TTNILCGLQDTCFSVWYYPNEVYV 528 (737)
T ss_pred EEEEeehhcCchhhhhhh---hhhhhhhhhcc-ccceeeeeccceEEEEEcCCccee
Confidence 666555442211 11111 45788899984 445777889999999988765443
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=2.7e-17 Score=161.46 Aligned_cols=273 Identities=16% Similarity=0.279 Sum_probs=189.3
Q ss_pred EEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-------ee-----eEEee-cCCCCeEEEeee-----ecCCccEEEEE
Q 001311 456 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPH-----HKENIQFIFST 517 (1102)
Q Consensus 456 V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-------~~-----~~~~~-~h~~~v~~v~~~-----~~~~~~~l~s~ 517 (1102)
...+.|+|||. .|++-+.|..+++|++... .. ..+++ .....|...+|- ..++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45688999999 7999999999999998521 10 11111 133456666764 24566789999
Q ss_pred eCCCeEEEEEcCCCCCeeeecCCCC-----eeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC-
Q 001311 518 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 591 (1102)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~- 591 (1102)
+.|.-|++||.-+++....+..-.. ...+++|+||| .+|++ +..+.|++||+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---------------------eqlfa-GykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---------------------EQLFA-GYKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---------------------CeEee-cccceEEEeecc
Confidence 9999999999999887765543221 23445555555 45555 45678999998
Q ss_pred CCcceEEEEc--C---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCccc
Q 001311 592 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 665 (1102)
Q Consensus 592 ~~~~~~~~~~--~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1102)
+.|.....+. . .+..+-+.+++|+| +.+.+++|+...++-|+.-... .++..
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l--------------------- 245 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL--------------------- 245 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee---------------------
Confidence 5554322211 1 12234567889999 5558888887777666653222 11100
Q ss_pred chhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEE
Q 001311 666 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 745 (1102)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 745 (1102)
T Consensus 246 -------------------------------------------------------------------------------- 245 (406)
T KOG2919|consen 246 -------------------------------------------------------------------------------- 245 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311 746 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825 (1102)
Q Consensus 746 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s 825 (1102)
+ .+|.+.|+.++|.+||+.|.+|.
T Consensus 246 ------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 246 ------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ------------------------------------------------------e--cccCCCeeeEEeccCcCeecccc
Confidence 0 12677788888888888888887
Q ss_pred --CCeEEEEEcCC-CceeeeecCCCC-CeeEEE--EecCCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEE
Q 001311 826 --GGKISLFNMMT-FKTMATFMPPPP-AATFLA--FHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 898 (1102)
Q Consensus 826 --dg~I~iwd~~~-~~~~~~~~~~~~-~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~ 898 (1102)
|..|..||++. ...+..+..|.. .-..|- ..| ++++||+|+.||.|++||+++ +..+..+..|+..|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 67899999874 455666766655 333444 457 799999999999999999998 7778888889999999999
Q ss_pred ecCCCEEEEEcCC
Q 001311 899 SHALNVLVSSGAD 911 (1102)
Q Consensus 899 s~d~~~l~s~s~D 911 (1102)
+|--.++|+++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888888754
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=5.7e-17 Score=164.53 Aligned_cols=301 Identities=16% Similarity=0.190 Sum_probs=214.6
Q ss_pred ccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 739 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
..++..+.|.+++. .+++++.|..|++|.+....-...... ......+. .|...|.++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeeccc--CCcceeEEEEEcCC
Confidence 35788899988877 899999999999999865422111000 01111122 39999999999999
Q ss_pred CCeEEEEe-CCeEEEEEcC--------C--------CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 818 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
|..+|+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999765 2 334566788999999999999 9999999999999999999999
Q ss_pred eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee---eecCCCCCC------------CCCCCcE
Q 001311 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRTP------------TAQSDTR 945 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~~ 945 (1102)
.....+.+|...|..++|.|-++++++-+.|...+++++...+.....- +....+... ...--..
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999977777765533222111 000000000 0012256
Q ss_pred EEEccCCcEEEEE-----eCC-----eEEEEEcCCceE-eeeeccCCCCCCeeEEEEcC------------------CCc
Q 001311 946 VQFHQDQIHFLVV-----HET-----QLAIFETTKLEC-VKQWVPRESSAPITHATFSC------------------DSQ 996 (1102)
Q Consensus 946 ~~~spdg~~l~~~-----~d~-----~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~sp------------------d~~ 996 (1102)
++|+|||.+|++. ..+ ..++|+-...+. ...+ .+-..+...+.|+| -+-
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 8999999999872 122 334554432221 1111 12345556666654 122
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 997 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 997 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.+|.++ -..|+|||.++.+.++.+...+|.. +. .++|++ ||..|+..|.||-..+--++..|
T Consensus 314 vfaiAt-~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 314 VFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEEee-cceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 344554 5689999999999988877555444 44 899998 78999999999988877776666
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.1e-17 Score=166.50 Aligned_cols=220 Identities=14% Similarity=0.235 Sum_probs=166.3
Q ss_pred ccccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCcee----eeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311 401 AALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 401 ~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
.....||+++|..++|+| +...||+||.|.+|.||++-.+... .....|.||...|.-|+|.|.-.. +|+|+|.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~ 152 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGS 152 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccC
Confidence 336889999999999999 8889999999999999998755432 345679999999999999998877 7999999
Q ss_pred CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC-eeeEEEEccCCc
Q 001311 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGT 554 (1102)
Q Consensus 476 d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~ 554 (1102)
|.+|.+||+.+|+.+.++. |...|.+++|+ .||.+|++.+.|+.||+||.++++....-..|.+ .-....|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~-- 227 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS-- 227 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc--
Confidence 9999999999999999988 99999999984 5678999999999999999999877765544433 2222333333
Q ss_pred eeeeccccCceeEEEEcCCCCEEEEEe----CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEE-EECCCc
Q 001311 555 RTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNG 629 (1102)
Q Consensus 555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~ 629 (1102)
+. +++.+ .+..+-+||..+-+.-..+..-.....|.---|.+|.+.++. |-.|+.
T Consensus 228 -------------------g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 228 -------------------GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred -------------------Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 34 44433 588899999876543222221222223544456778777664 556999
Q ss_pred EEEEEccCCccceeecc
Q 001311 630 IKILATSDGIRLLRTFE 646 (1102)
Q Consensus 630 i~iwd~~~~~~~~~~~~ 646 (1102)
||.|.+.+....+..+.
T Consensus 288 IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 288 IRYFEITNEPPFVHYLN 304 (472)
T ss_pred eEEEEecCCCceeEEec
Confidence 99999988754454443
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.5e-17 Score=165.02 Aligned_cols=244 Identities=14% Similarity=0.209 Sum_probs=176.7
Q ss_pred CccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311 336 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 415 (1102)
Q Consensus 336 ~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 415 (1102)
.......-+|++.|..++|+|-....+|+||.|.+|.||++..+..... ..-....+.||...|.-++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEe
Confidence 3444456689999999999999888999999999999999976654432 1122336899999999999
Q ss_pred Ecc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311 416 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494 (1102)
Q Consensus 416 ~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~ 494 (1102)
|+| -.+.|++++.|.+|.+||+.+|+.+. ++. |.+-|+++.|+.||. +++|.+.|+.|||||.++|+.+..-.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence 999 57789999999999999999998665 354 999999999999999 79999999999999999999999888
Q ss_pred cCCCCeEEEeeeecCCccEEEEEe---CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311 495 GHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 495 ~h~~~v~~v~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 571 (1102)
+|.+.-..-++ +-.+|.++.+|- .+..+-+||..+.+....+..- .+...+..--++
T Consensus 213 ~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PFyD 272 (472)
T KOG0303|consen 213 AHEGAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPFYD 272 (472)
T ss_pred cccCCCcceeE-EeccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEeeec
Confidence 88765332221 245556444442 3678999988765443221110 011123333456
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcCC
Q 001311 572 TTKNRFLAAG-DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD 617 (1102)
Q Consensus 572 ~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~ 617 (1102)
++.+.++.+| .|+.||-|.+....+ ++-+........-..+.|-|.
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 6667776655 799999999977653 233322222233455777664
No 176
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.9e-16 Score=171.05 Aligned_cols=510 Identities=14% Similarity=0.155 Sum_probs=290.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC-----
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 419 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 419 (1102)
|...-.++.|+|.| |+|-|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 33446789999999 6888775 678899988877776 47789999999999872
Q ss_pred -C------CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC---CCeeEEEEecCCCcEEEEeCCCCee
Q 001311 420 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGDDKTIKVWDATNGAK 489 (1102)
Q Consensus 420 -g------~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~~d~~i~vWd~~~~~~ 489 (1102)
+ -+||++...|.|.+||...+..+. .+..|.++|..++|-+. .+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999876544 47789999999998653 334 455555567999999999999
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc-------eeeec--c
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--F 560 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--~ 560 (1102)
............|+.+.|-...++.+.+ ..|.+.+-+.-..... ......+.+..+-. ....+ +
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 9888766666666776554443444444 4577766654321110 00111111111100 00000 0
Q ss_pred ccC--c------eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC--CEEEEEECCCcE
Q 001311 561 RKR--S------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 630 (1102)
Q Consensus 561 ~~~--~------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 630 (1102)
+.. . ..-++|+|.-+.++-..-...+.++|++-..++.......+ .+.-+.+-|++ ..|++.-.||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 000 0 11245677655566666677899999999888888876655 34446776754 579999999999
Q ss_pred EEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccC
Q 001311 631 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 710 (1102)
Q Consensus 631 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 710 (1102)
.+|-.+......+.-..+- +. +.
T Consensus 299 tirvrk~~~~~f~~~~~~l--------------~~-------------------------------------------dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNASL--------------SM-------------------------------------------DL 321 (1062)
T ss_pred EEEEeeccCccccccchhh--------------cc-------------------------------------------cc
Confidence 9997654322211110000 00 00
Q ss_pred CCccceEecccCCCCCccccccCCCcccccceEEEEEccC-CceEEEeecCceEEeeeccccccCCCCcccccccceecc
Q 001311 711 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 789 (1102)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 789 (1102)
...+.+.... .+..+......|. .+.++..-.+|...+|.+..+....++......-..-+|
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 0000000000 1111112222232 233444455666666766543332222110000000000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCe--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311 790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 867 (1102)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 867 (1102)
....... -....-+.+|.||.. +.|. +++--+.......... .+. +....-| ++|.|+
T Consensus 385 f~~~~~~---------v~k~~l~~LS~dg~h----~sGs~~~~~~p~p~~t~~~~~p--~~n-~~~~~~p----LvAvGT 444 (1062)
T KOG1912|consen 385 FNLSTKL---------VGKTSLISLSDDGSH----SSGSTCVRMRPMPELTKVENDP--GGN-TPAGTVP----LVAVGT 444 (1062)
T ss_pred ccCceee---------hhhccccchhhcCCC----CCCceeeecccCcccceeecCC--CCC-ccceeee----eEEeec
Confidence 0000000 000000111111100 0011 0000011111111111 111 1111223 899999
Q ss_pred CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc----------CCCcEEEEEcCCCcccceeeeecCCCCC
Q 001311 868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRT 937 (1102)
Q Consensus 868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 937 (1102)
+.|+|.|+|+.++...+.+..|.+.|.++.|-.... |++.+ .-+.+.|-|+.+|.....+-++.
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~----- 518 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK----- 518 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCC-----
Confidence 999999999999999999999999999999976544 33332 22457888999876544333222
Q ss_pred CCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCC-eeEEEEc
Q 001311 938 PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS 992 (1102)
Q Consensus 938 ~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~s 992 (1102)
+...+|+.+..|.-|+||++. .+.-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs 572 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS 572 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence 233689999999999999996 888999999988877665432 234 8888888
No 177
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.1e-16 Score=167.65 Aligned_cols=605 Identities=11% Similarity=0.092 Sum_probs=343.0
Q ss_pred CCCCCccceeecc-CCCCeeEEEEecC-----------CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccc
Q 001311 332 PEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 399 (1102)
Q Consensus 332 ~~~~~~~~~~~~~-h~~~v~~v~~spd-----------g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1102)
+|...-+.+..+. |...|+.|.|.|- .+.++|++...|.|.|||+..+..+.
T Consensus 40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---------------- 103 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---------------- 103 (1062)
T ss_pred EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh----------------
Confidence 3444445555555 8899999999762 35678999999999999999886665
Q ss_pred cccccCCCCCCeEEEEEcc---CC-CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311 400 QAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 400 ~~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
-+..|.++|..++|-+ +. ..|++-....++.+|+..+|+.+-+ ...-.....|+.+.|-+..-+.+.|+
T Consensus 104 ---~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s- 176 (1062)
T KOG1912|consen 104 ---WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGS- 176 (1062)
T ss_pred ---hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEcc-
Confidence 3778899999999987 44 5677777888999999999986643 23334567778888866542444444
Q ss_pred CCcEEEEeCC-C------CeeeEEeecCCC----------------C-------eEEEeeeecCCccEEEEEeCCCeEEE
Q 001311 476 DKTIKVWDAT-N------GAKQYIFEGHEA----------------P-------VYSVCPHHKENIQFIFSTALDGKIKA 525 (1102)
Q Consensus 476 d~~i~vWd~~-~------~~~~~~~~~h~~----------------~-------v~~v~~~~~~~~~~l~s~s~dg~i~~ 525 (1102)
.|.+.+-+.- . |+..+.-..|.. . ..+..|.+.+.-+-++-......+.+
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv 256 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV 256 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence 4555554432 1 233332222222 0 01111222222222333344577889
Q ss_pred EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC------------
Q 001311 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------ 593 (1102)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------ 593 (1102)
+|++-..++.....+.+.+.-+.+.|++++ ..|++.-.||.+.+|-.+.
T Consensus 257 ~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 257 FDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred EcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchhh
Confidence 999887777777766666666777777653 4588888999999997654
Q ss_pred ----cceEEEEcCCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCCccceeeccccccccccc---------CCCC
Q 001311 594 ----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT---------SENS 659 (1102)
Q Consensus 594 ----~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~~ 659 (1102)
+..+..+....... .......|. ...++.--.+|.+.+|.+.++........+........ ....
T Consensus 318 ~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~ 396 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTS 396 (1062)
T ss_pred ccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhcc
Confidence 22222222111111 222333443 55566666788899999887632211111111111000 0000
Q ss_pred CCCcccchhhhHhhhhcccc-cccccccc--ccCCCCCCcccc-CCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311 660 KPTISPISAAAAAAATSAGL-ADRAASMV--SIPGMNGDVRSL-ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 735 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 735 (1102)
...++.++ .-+.|. +.+..|+. ....-.+..... --...++.|...|+|.++|+.+.......
T Consensus 397 l~~LS~dg------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f------- 463 (1062)
T KOG1912|consen 397 LISLSDDG------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF------- 463 (1062)
T ss_pred ccchhhcC------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh-------
Confidence 00111111 000110 11111111 111111111111 12355678889999999999875443332
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
..|...|.++.|..+.+.+-.+.+. .. +........+.+-|+.+|.-....-.....+.+|+.+..|
T Consensus 464 svht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS 530 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVS 530 (1062)
T ss_pred cccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCcceeeeec
Confidence 3488999999998887744333221 00 0000111233455667776544332233468899999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCC----------------cEEEEEeCCCcEEEEEe
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~lasg~~dg~v~vwd~ 877 (1102)
.-++|++..- +.-+.+||+++..+++.....-.-|+.+.|+ | .- +..+..+ +..+++.+
T Consensus 531 ~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~ 607 (1062)
T KOG1912|consen 531 SSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHI 607 (1062)
T ss_pred ccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheeh
Confidence 9999999998 8889999999888776655444558889988 3 21 1333333 23333333
Q ss_pred ec-------cee-eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311 878 RV-------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949 (1102)
Q Consensus 878 ~~-------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 949 (1102)
.. +.. ....+.....+..|+| .+..|+.|+.+|.+.+||+....... ....+. + -.......+-
T Consensus 608 ~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~-~---ra~~l~~~~i 679 (1062)
T KOG1912|consen 608 TLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSPD-P---RAHSLTFPQI 679 (1062)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCCC-c---hhhheecccC
Confidence 21 111 1111112223445677 46789999999999999987643211 111111 0 0122333444
Q ss_pred cCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311 950 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus 950 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
|....+++-...-+.+||.+....+..+.....+..+..+.+......++ ..|.++|+--+......
T Consensus 680 pG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~~ 746 (1062)
T KOG1912|consen 680 PGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSPP 746 (1062)
T ss_pred CCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCCc
Confidence 54444555556678899999888887774333345566666665444444 34457777666555443
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.4e-17 Score=190.68 Aligned_cols=278 Identities=14% Similarity=0.193 Sum_probs=208.9
Q ss_pred cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCce----EEEeecCceEEeeeccccccCCCCccccccc
Q 001311 709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 784 (1102)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 784 (1102)
+.+.++.+|.+........++.... .....+-..++|.+.|.. ++.|..||.|.+|+......+...
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~------- 106 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE------- 106 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-------
Confidence 4456777777665443322221111 114567788999998877 777778999999987431000000
Q ss_pred ceeccCCCccccccccCCCCCCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCC
Q 001311 785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 860 (1102)
Q Consensus 785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~ 860 (1102)
.++ .....|.+.|..+.|++... +||+|+ ||.|.|||+...+...++. .....|.+++|+....
T Consensus 107 ---------~~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 107 ---------EVL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred ---------HHH---hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 011 11123999999999999776 899998 8999999999866555542 2456899999998778
Q ss_pred cEEEEEeCCCcEEEEEeecceeeeeeccccc--cceeEEEecCC-CEEEEEcCCC---cEEEEEcCCCcccceeeeecCC
Q 001311 861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 934 (1102)
Q Consensus 861 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~ 934 (1102)
++||+++.+|.+.|||++..+.+-.+..|.+ .+..|+|+|++ ..|++++.|. .|.+||++.- ...+++.+
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 8999999999999999999888888877665 36689999986 5566666553 5999998753 23566677
Q ss_pred CCCCCCCCCcEEEEccCC-cEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEeCCCeEEEEE
Q 001311 935 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1011 (1102)
Q Consensus 935 ~~~~~~~~v~~~~~spdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~Dg~I~vwd 1011 (1102)
+|.. .|.++.|++.+ .+|++ +.|+.|.+|+.++++.+..+.. ....+..+.|+|..- .+++++-||.|.||.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 7775 89999999977 77777 5999999999999999999874 478999999999655 889999999999999
Q ss_pred cCCce
Q 001311 1012 AANLK 1016 (1102)
Q Consensus 1012 ~~~~~ 1016 (1102)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87765
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.5e-15 Score=168.73 Aligned_cols=279 Identities=10% Similarity=0.115 Sum_probs=178.4
Q ss_pred cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec-CceEEeeeccccccCCCCcccccc
Q 001311 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV 783 (1102)
Q Consensus 705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~ 783 (1102)
.++...++.|.+|++...........+. .......++++|++++|++++. ++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 3445678999999996422222223221 2345678899999998877654 68888888631
Q ss_pred cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCC-Cc---eeeeecCCCCCeeEEEEec
Q 001311 784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 857 (1102)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~-~~---~~~~~~~~~~~i~~l~~sp 857 (1102)
++.+..... .........++++|+++++++++ ++.|.+|++.+ +. .+..+. +.....+++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223467899999999999887 78999999974 22 222232 234467789999
Q ss_pred CCCcEEE-EEeCCCcEEEEEeecceeee-------eeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCC--Ccccc
Q 001311 858 QDNNIIA-IGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK 926 (1102)
Q Consensus 858 ~d~~~la-sg~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~--~~~~~ 926 (1102)
++++++ +...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++. ++...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 777665 55567999999997632221 1111 233567999999999988776 89999999974 22211
Q ss_pred eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----EeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311 927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
...+...............+.|+|||++++++ .++.|.+|++.... .+..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11222111111111223468999999999996 46899999986432 2222221 234568899999999998
Q ss_pred EeC-CCeEEEEEcC--Ccee
Q 001311 1001 CFL-DATVCVFSAA--NLKL 1017 (1102)
Q Consensus 1001 ~s~-Dg~I~vwd~~--~~~~ 1017 (1102)
++. +++|.||+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 775 8999999874 4443
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.9e-17 Score=173.65 Aligned_cols=229 Identities=16% Similarity=0.285 Sum_probs=179.2
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEcc-----CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 477 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 477 (1102)
.+..|.+.|+.++|.|....|++|+.||++++|++. ....+.++.++++|.++|.|+++.+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3345678889999999999999999999 799999999
Q ss_pred cEEEEeCC------CC----eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC--CCeee
Q 001311 478 TIKVWDAT------NG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCT 545 (1102)
Q Consensus 478 ~i~vWd~~------~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~ 545 (1102)
+|+.|++. +. .....+.||++.|+.++++... ..|++++.||+++.|+...... .++... .+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999554 21 2335778999999999987665 5699999999999998876554 222221 11122
Q ss_pred EEEEccCC--------c---------------eeeec------cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q 001311 546 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 596 (1102)
Q Consensus 546 ~~~~s~~~--------~---------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 596 (1102)
++.+.... + +++.. .....+.-+..+|.+.+.+++.+|+.|+++|..+++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22221111 0 11111 1113456678889999999999999999999999999
Q ss_pred EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 597 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 597 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+.....+. ..++++++.|+|-+|++++.||.+++|.....
T Consensus 524 l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 98887664 47999999999999999999999999987655
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=157.45 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=119.4
Q ss_pred EEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 548 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1102)
.++++-..|+|+++|..+|+.+..|+++...++.+.|........+.+|+.||+|++||++.......+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---------- 111 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---------- 111 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----------
Confidence 5788888999999999999999999999999999999765456789999999999999999765443322
Q ss_pred EccCCceeeeccccCceeEEEEcCCCCEEEEEe----CCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcC-CCCEEE
Q 001311 549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 622 (1102)
Q Consensus 549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~ 622 (1102)
+.++...++.+++..-.++.+++|. .+-.|.+||++..+. +..+. ..|...|+++.|+| +..+|+
T Consensus 112 --------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 112 --------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred --------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 2222233566666666667777765 478899999998776 44443 44556899999999 778999
Q ss_pred EEECCCcEEEEEccCC
Q 001311 623 VSTNDNGIKILATSDG 638 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~ 638 (1102)
+|+.||.|.+||+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998654
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.6e-16 Score=152.21 Aligned_cols=234 Identities=15% Similarity=0.245 Sum_probs=161.6
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK- 816 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~- 816 (1102)
+-+.|.++.|.|++..+++-. |..|.+|++.....- .+. +... ...++....++-+|+|
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-----vae------------v~ss--~s~e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-----VAE------------VLSS--ESAEMRHSFTSGAWSPH 181 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-----hee------------eccc--ccccccceecccccCCC
Confidence 556899999999999888776 778899987543210 000 0000 0011455677788887
Q ss_pred -CCCeEEEEeCCeEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccc
Q 001311 817 -NDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRI 893 (1102)
Q Consensus 817 -d~~~las~sdg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V 893 (1102)
|+..+++.+|+++..||+++..+...+ .+|...|..+.|+|....+||+|++||.|+|||.++ ...+..+.+|+.-|
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 899999999999999999988776655 468888999999996677999999999999999986 56788999999999
Q ss_pred eeEEEecC-CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce
Q 001311 894 TGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 972 (1102)
Q Consensus 894 ~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~ 972 (1102)
+++.|+|. .+++.++|.|..|.+|....-....................... ++ -+..|
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer-----------------~k--pL~dg- 321 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER-----------------VK--PLQDG- 321 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh-----------------cc--ccccc-
Confidence 99999986 46778999999999998765221110000000000000000000 00 01111
Q ss_pred EeeeeccCCCCCCeeEEEEcCCCcE-EEEEeCCCeEEEEEcC
Q 001311 973 CVKQWVPRESSAPITHATFSCDSQL-VYACFLDATVCVFSAA 1013 (1102)
Q Consensus 973 ~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~Dg~I~vwd~~ 1013 (1102)
.+.++ ..|.+.|++++||.-.-+ +|+-+.||.+.|=.+.
T Consensus 322 ~l~ty--dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 322 QLETY--DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccc--cccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11222 378999999999986665 6788999999886554
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.4e-16 Score=177.45 Aligned_cols=306 Identities=16% Similarity=0.258 Sum_probs=209.7
Q ss_pred cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC---CCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528 (1102)
Q Consensus 452 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~ 528 (1102)
...+-..+.|+|-.. .++++...-.|+|||.+.++++..|..+ ...|+.+++-...|..++++|+.||.||+|+-
T Consensus 1063 n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344566788888888 5788887779999999999998888654 35588888877777789999999999999964
Q ss_pred CCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311 529 DNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 607 (1102)
Q Consensus 529 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 607 (1102)
-... ...++...-..+..+.. +..+.. ..+.|.....+|+++|+-..|+|||......+..+..... .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~---------~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t 1209 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLP---------GARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-T 1209 (1387)
T ss_pred cccccCCceeEEeeccccccCc---------cCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-c
Confidence 3321 11111111111111111 111112 5567777777888888899999999998888877764432 3
Q ss_pred CcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311 608 ASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 686 (1102)
Q Consensus 608 ~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1102)
.++++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------------- 1244 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------------- 1244 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCcc---------------------------------------------
Confidence 465555443 5799999999999999997654110
Q ss_pred cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc--eEEEEEccCCce-EEEeecCceE
Q 001311 687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--ISRLIFTNSGNA-ILALASNAIH 763 (1102)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~g~~-l~~~~~dg~i 763 (1102)
..|.+|. .|+.. |..+.+-+.|-. |++++.||.|
T Consensus 1245 -------------------------s~v~~~R------------------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1245 -------------------------SLVCVYR------------------EHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred -------------------------ccceeec------------------ccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 1111221 13333 778888776654 9999999999
Q ss_pred EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee
Q 001311 764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF 843 (1102)
Q Consensus 764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~ 843 (1102)
++||+..... ...-. -+.-|+ ..+..+++..+++...+|+|+.+.|+||++.. +.+..+
T Consensus 1282 ~~~DlR~~~~-e~~~~----iv~~~~---------------yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~ 1340 (1387)
T KOG1517|consen 1282 QLLDLRMSSK-ETFLT----IVAHWE---------------YGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNII 1340 (1387)
T ss_pred EEEecccCcc-cccce----eeeccc---------------cCccceeeeeccCCCeeeecCcceEEEEecCh-hhhccc
Confidence 9999854210 00000 000010 13358999999999999999999999999864 444433
Q ss_pred cC-------CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 844 MP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 844 ~~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
+. ..+.+.|++|+| -.-++|+|+.|.+|.||...+.
T Consensus 1341 k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 32 235689999999 8889999999999999987654
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=157.53 Aligned_cols=214 Identities=8% Similarity=0.028 Sum_probs=151.2
Q ss_pred cccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc---eeeeEEEe-eccccCEEEEEEcCCCCeeEEEEecC
Q 001311 400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD---EVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 400 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~---~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
..+-+.+|.+.|.++.||.++++||+|+.|..++||+++.-- ..+++... ..|...|.|++|...+. .+++|+.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~ 125 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGER 125 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCC
Confidence 334578999999999999999999999999999999986321 11111112 23568999999998888 7999999
Q ss_pred CCcEEEEeCCCCeeeEEeec--CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee---eecCCCCeeeEEEEc
Q 001311 476 DKTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGRWCTTMAYS 550 (1102)
Q Consensus 476 d~~i~vWd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s 550 (1102)
+++|...|+++.+.+.++.. ..+.|+.+..++.. +.+++.+.+|.|.+||.+...... .......
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~-------- 195 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK-------- 195 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCc--------
Confidence 99999999999999988862 23589999887763 689999999999999998644211 1111122
Q ss_pred cCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCcce-EEEEcCC----CCCCCcCeEEEcCCCCEEEEE
Q 001311 551 ADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQL-LTSIDAD----GGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 551 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
.+..+-|+|.. .+|++.+..+-+.+||.+.... +....+. .....-.++.|+|.|..+.+-
T Consensus 196 -------------~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 196 -------------NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred -------------cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 34444555544 3567788888999999875431 1111111 111123578899999988876
Q ss_pred ECCCcEEEEEccCC
Q 001311 625 TNDNGIKILATSDG 638 (1102)
Q Consensus 625 ~~dg~i~iwd~~~~ 638 (1102)
-....-.+||+.+.
T Consensus 263 RR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQ 276 (609)
T ss_pred hccCCCEEeeeecc
Confidence 66555566776554
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=3.5e-15 Score=165.64 Aligned_cols=252 Identities=11% Similarity=0.095 Sum_probs=164.7
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcC-CCce--eeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeec-
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV- 879 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~- 879 (1102)
.....++++|++++|+++. ++.|.+|++. ++.. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4567889999999988775 6889999996 3332 22222 234577899999 787777665 488999999974
Q ss_pred ce---eeeeeccccccceeEEEecCCCEEEE-EcCCCcEEEEEcCCCcccce---eeeecCCCCCCCCCCCcEEEEccCC
Q 001311 880 DE---VKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 880 ~~---~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
+. .+..+.+ .....+++++|+++++++ ...++.|.+||+.+...... .......+ .....++|+|||
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 32 2233332 234567899999998855 45669999999986332111 11122222 245789999999
Q ss_pred cEEEEE--eCCeEEEEEcCC--c--eEeeeeccC----CCCCCeeEEEEcCCCcEEEEEeC-CCeEEEEEcCCceeEEEe
Q 001311 953 IHFLVV--HETQLAIFETTK--L--ECVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 953 ~~l~~~--~d~~i~iwd~~~--~--~~~~~~~~~----~h~~~v~~l~~spd~~~l~s~s~-Dg~I~vwd~~~~~~~~~~ 1021 (1102)
++++++ .++.|.+|+++. + +.+..+... .+......+.|+||+++|+++.. ++.|.+|+++......++
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999885 478999999973 3 233333211 11223456899999999998864 789999999654321111
Q ss_pred CCCcccCCCCCCCcccceEEEecCCCCCEEEEEec-CCcEEEEeccCCCccccc
Q 001311 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~-Dg~v~vW~~~~~~~~~~~ 1074 (1102)
. ...+.+ ..+..+.|+| |+++|+++.. +++|.+|++....+.+..
T Consensus 267 ~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~ 312 (330)
T PRK11028 267 E--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTE 312 (330)
T ss_pred e--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEE
Confidence 1 011111 2233689999 5777776664 899999998654433433
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7.8e-17 Score=153.99 Aligned_cols=308 Identities=11% Similarity=0.146 Sum_probs=198.9
Q ss_pred eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI 523 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i 523 (1102)
+.+.+++|.+.|+++.|-.++. |.+|..-|.|++|++.+.+.+..++ .|...|+.+... ++ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~--p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI--PN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeec--CC-cchhhcCCCceE
Confidence 3456889999999999988886 8999999999999999999888888 567778877643 32 578999999999
Q ss_pred EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC-eEEEEECCCcceEEEEcC
Q 001311 524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 602 (1102)
.+|++....-+.. +.-.+.++.|.+-.- ..+ .... ...++.-++.. .+.+-|......+...+.
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl--~~~---~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSL--VKK---PKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEE---eeeecccccccccee--ccC---CCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence 9999876433221 112223333322110 000 0000 01111111100 122222222222222111
Q ss_pred --CCCCCCcCeEEEcC-CC--CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001311 603 --DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 677 (1102)
Q Consensus 603 --~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1102)
....+.+.+..+.. ++ -+|++|.++|.+.+||+.++...+ .+......
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~~kv-------------------------- 197 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQSSKV-------------------------- 197 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-cccccccc--------------------------
Confidence 11223444444322 23 357788899999999998873322 22110000
Q ss_pred ccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEe
Q 001311 678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 757 (1102)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 757 (1102)
..+...|..+|.++.|.+.-..=+++
T Consensus 198 ------------------------------------------------------~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 198 ------------------------------------------------------ESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ------------------------------------------------------ccchhhccCcceeeeechhhcCCcCC
Confidence 00112377889999988776666778
Q ss_pred ecCceEEeeeccccccCCCCcccccccceeccCCCcccc-ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC
Q 001311 758 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 835 (1102)
Q Consensus 758 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~ 835 (1102)
+.+..+..|.++.. +|.+. ..++.- .+-.+..+.+-||++.+|+++ |+.||||+.+
T Consensus 224 ga~dkl~~~Sl~~s--------------------~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 224 GADDKLVMYSLNHS--------------------TGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred Cccccceeeeeccc--------------------cCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 88888888877432 11111 001111 244578889999999999999 9999999999
Q ss_pred CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 836 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 836 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
+.+.+..+..|...|.+++|+| +..++|.++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999 8899999999999999986
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=5.4e-16 Score=152.60 Aligned_cols=396 Identities=13% Similarity=0.152 Sum_probs=234.1
Q ss_pred EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
-++|||+|+|+|+++.- .+.|-|.++-+... +.-.-+.|..+.|..|.-+ .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999866 78888887755332 2223467889999998875 566677899999999999998888
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
+......+.+++|++++. .+|.+...|-.|.+|.+.+..... +..+.. .+..++|++
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~---------------------~~kg~~f~~ 143 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKT---------------------NVKGYAFHP 143 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-eccccc---------------------CceeEEECC
Confidence 988888899999965432 566777789999999998744322 222222 334455555
Q ss_pred CCCEEEEEeCC-C--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311 573 TKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649 (1102)
Q Consensus 573 ~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 649 (1102)
+|++.+..+.- . .+.|.....-..+..+... +...+.+.|+|||..|++ ||..-..+.
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~d--T~DltgieWsPdg~~laV---------wd~~Leykv-------- 204 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLD--TIDLTGIEWSPDGNWLAV---------WDNVLEYKV-------- 204 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCC--cccccCceECCCCcEEEE---------ecchhhhee--------
Confidence 55556555532 1 1222222222333344332 335678999999988775 442111000
Q ss_pred ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311 650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 729 (1102)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 729 (1102)
..|.
T Consensus 205 -----------------------------------------------------------------~aYe----------- 208 (447)
T KOG4497|consen 205 -----------------------------------------------------------------YAYE----------- 208 (447)
T ss_pred -----------------------------------------------------------------eeee-----------
Confidence 0000
Q ss_pred cccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCe
Q 001311 730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 809 (1102)
Q Consensus 730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i 809 (1102)
..-.+..+.++|.++.+++|+.|+.+++.+--+-+.-...-.+.+. -|+....+...... ...-..
T Consensus 209 --------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~----~dp~~~~~~ke~~~--~~ql~~ 274 (447)
T KOG4497|consen 209 --------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY----HDPTLHLLEKETFS--IVQLLH 274 (447)
T ss_pred --------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhc----cCchhhhhhhhhcc--hhhhcc
Confidence 1134667788888888888888888887542111000000000000 00000000000000 001112
Q ss_pred eEEEEecCCCeEEEEeCCeEEEEEcC-CCceeee------ecCCCCCeeEEEEecCCCcEEEEEeCC--CcEEEEEeecc
Q 001311 810 PCFALSKNDSYVMSASGGKISLFNMM-TFKTMAT------FMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVD 880 (1102)
Q Consensus 810 ~~l~~s~d~~~las~sdg~I~iwd~~-~~~~~~~------~~~~~~~i~~l~~sp~d~~~lasg~~d--g~v~vwd~~~~ 880 (1102)
.++.|.|..- =+.-....=.+|+.. +...+.. +......+.-++|++ |..++|+-.+. ..+-+||+...
T Consensus 275 ~cLsf~p~~~-~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l 352 (447)
T KOG4497|consen 275 HCLSFTPTDL-EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNL 352 (447)
T ss_pred cccccCCCcc-ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhh
Confidence 3444444321 000000000112211 1111222 223345688899999 89999886543 47999999987
Q ss_pred eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
++...+. ...+|.+..|.|....|+.+.....+.+|..... .....+... ..|..+.|..+|..++..
T Consensus 353 ~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~-----~~V~vP~~G----F~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 353 KLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-----RVVGVPKKG----FNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred hhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc-----eEEecCCCC----ceeeeEEecCCCcEEEEE
Confidence 7655554 4567999999999989988887888999988762 233333222 478999999999998874
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=142.57 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=196.9
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..|.+-+++|.+++++++..+|.|.+..+..-..... ...|+...... .+|..++..++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hh
Confidence 3455667899999999999999999998754221110 11222222222 3499999999998 55
Q ss_pred eEEEEeCCeEEEEEcCCCce------eeee--cC-----CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311 820 YVMSASGGKISLFNMMTFKT------MATF--MP-----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~------~~~~--~~-----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 886 (1102)
+|++++||.|+=|..+.... +.+. .- .-.+|+++-..|..+. ++.++.|+.++-||+++|+..+++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE
Confidence 88899999999998754322 1111 11 2346999999994444 445557999999999999999999
Q ss_pred ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC--CCCCCcEEEEccCCcEEEEEeCCeEE
Q 001311 887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP--TAQSDTRVQFHQDQIHFLVVHETQLA 964 (1102)
Q Consensus 887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~d~~i~ 964 (1102)
+||++.|-++.--.....+.+|+.||++||||.++++... .+........ +...-.-.+..-+..+|+++....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence 9999999999986666789999999999999999976432 2211111100 00111225566677899999888999
Q ss_pred EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEec
Q 001311 965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1044 (1102)
Q Consensus 965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~ 1044 (1102)
+|++...++...+.. ..++..+.|. .+.+++++....|.-|.+. |.+...+. .+|+. -+..+..-+
T Consensus 231 lwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s~~--c~s~s~~~~ 296 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VESTA--CYSASWQTS 296 (325)
T ss_pred EEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCccc--eeeecccCC
Confidence 999999999988875 4578888885 4567888888889988865 34443333 12111 121123333
Q ss_pred CCCCCEEEEEecCCcEEEEe
Q 001311 1045 PQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus 1045 p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
| -++|..++..+.+.|+.
T Consensus 297 p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 P--IKFISIAGFSNKLHILK 314 (325)
T ss_pred c--eEEEEecccceeeeeee
Confidence 4 35666677777777764
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.2e-16 Score=156.41 Aligned_cols=305 Identities=18% Similarity=0.264 Sum_probs=204.8
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC------CeeeEEeec-CCCCeEEEeeeecCCccEEEEEeCC
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALD 520 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~------~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~d 520 (1102)
.+.+|.+.|+++.|+.+++ +|++|+.|..+++|++.. .+++..... |...|.|+.|. ....++++|..+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--LENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--cCCeeEecCCCc
Confidence 4678999999999999988 899999999999999863 456665543 56889999984 334799999999
Q ss_pred CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEE
Q 001311 521 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 599 (1102)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 599 (1102)
++|...|+.+.+.+..+.... ..+.+.-+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~-------------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENN-------------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccC-------------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 999999999876655443221 11245555666666789999999999999998655 3322
Q ss_pred EcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccc
Q 001311 600 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 678 (1102)
Q Consensus 600 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1102)
+-.........++.|+| ...+|++.+..+.+-+||.+.....+....+...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~---------------------------- 239 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG---------------------------- 239 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----------------------------
Confidence 22222233577899999 5667888888899999998765332221111000
Q ss_pred cccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEee
Q 001311 679 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 758 (1102)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 758 (1102)
++. ....-.++.|+|+|+.+++.-
T Consensus 240 ------------------------------------------------------L~~--~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 240 ------------------------------------------------------LPQ--ENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred ------------------------------------------------------Ccc--cchhhhheeeCCCCCeehhhh
Confidence 000 111223466777777666554
Q ss_pred cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc
Q 001311 759 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 838 (1102)
Q Consensus 759 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~ 838 (1102)
....-.+||+ |.....-+.+..+. .|.
T Consensus 264 R~~~P~~~D~------------------------------------~S~R~~V~k~D~N~-----------------~GY 290 (609)
T KOG4227|consen 264 RGKCPLYFDF------------------------------------ISQRCFVLKSDHNP-----------------NGY 290 (609)
T ss_pred ccCCCEEeee------------------------------------ecccceeEeccCCC-----------------Ccc
Confidence 4433333332 11111111111000 011
Q ss_pred eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----c------------------eeeeeecccccccee
Q 001311 839 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----D------------------EVKSKLKGHSKRITG 895 (1102)
Q Consensus 839 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~------------------~~~~~l~~h~~~V~~ 895 (1102)
+ ....+.+++|.. ..-+++|+++-.|++|.+.. | +.+..|+||..-+..
T Consensus 291 ~------N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 291 C------NIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred e------eeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 0 112466788874 45699999999999998742 1 134568999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 896 LAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
+.|+|...+|++.+....+++|.--
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeecCCcceEeccchhhheeccccc
Confidence 9999999999999999999999643
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=158.38 Aligned_cols=198 Identities=13% Similarity=0.180 Sum_probs=149.9
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCCeEEEEECCCeEEEEEcc
Q 001311 361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH 438 (1102)
Q Consensus 361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~v~vwd~~ 438 (1102)
.+|++-..|.|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58888889999999999988776 3788999999999988 56788899999999999999
Q ss_pred CCceeeeEEEeeccc-cCEEEEEEcCCCCeeEEEEec----CCCcEEEEeCCCCee-eEEe-ecCCCCeEEEeeeecCCc
Q 001311 439 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI 511 (1102)
Q Consensus 439 ~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~----~d~~i~vWd~~~~~~-~~~~-~~h~~~v~~v~~~~~~~~ 511 (1102)
+......+ ...+|. .+-.|++..-.+. ++++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 345555 4667777665565 566654 466799999998776 5554 56999999999998654
Q ss_pred cEEEEEeCCCeEEEEEcCCCCC---eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001311 512 QFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588 (1102)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 588 (1102)
++|+|||.||-|.+||+..... +...-.+...|..+.|..++- ..+.+-+...+..+
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~ 238 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI 238 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence 7999999999999999976422 112222334455555555542 34788888899999
Q ss_pred EECCCcceEEEEc
Q 001311 589 WDMDSVQLLTSID 601 (1102)
Q Consensus 589 wd~~~~~~~~~~~ 601 (1102)
|+++.+.+...+.
T Consensus 239 ~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 239 YELEDGSEETWLE 251 (376)
T ss_pred EEccCCChhhccc
Confidence 9999988665554
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=2.6e-16 Score=152.19 Aligned_cols=259 Identities=15% Similarity=0.235 Sum_probs=187.5
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCC-------eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVG-------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~-------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
++.|.+.|+.++-+|..+.+|+|...+- .+.||.+........ .. .......+-..+-+.|.|+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCceeeE
Confidence 4567899999999999988999876532 478888754322210 00 1111122233566799999
Q ss_pred EEccCCCeEEEEECCCeEEEEEccCCcee-eeEE--EeeccccCEEEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCee
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHL--EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK 489 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~~~~~~-~~~~--~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~vWd~~~~~~ 489 (1102)
.|.|++..||+-. |..|.+|+++.+..+ .... .-.+|....++-+|+| |+. .+++. .|+++..||+++.++
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKK 205 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhh
Confidence 9999999999876 888999999987652 1111 1123566788889998 566 34544 478999999999888
Q ss_pred eEEe-ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311 490 QYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567 (1102)
Q Consensus 490 ~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 567 (1102)
...+ ..|...|..+.|++... .+|++|+.||.|++||.+.. ..+..+..|..+|.++.|.|.-.
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd------------- 271 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD------------- 271 (370)
T ss_pred hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-------------
Confidence 8776 46888999999876543 68999999999999999875 45678899999999999988765
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCcc-----------------------------eEEEEcCCCCCCCcCeEEEcC-C
Q 001311 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-D 617 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~ 617 (1102)
+++++++.|..|.+|...+-. .+.++. .+...|.+++|+. |
T Consensus 272 -------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 272 -------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSAD 342 (370)
T ss_pred -------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCC
Confidence 468888888888888654211 112333 2345799999998 4
Q ss_pred CCEEEEEECCCcEEEEEcc
Q 001311 618 GCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 618 ~~~l~~~~~dg~i~iwd~~ 636 (1102)
.-.+++-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 5556677889999876553
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=2.5e-15 Score=151.14 Aligned_cols=241 Identities=14% Similarity=0.203 Sum_probs=182.3
Q ss_pred CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001311 806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 883 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 883 (1102)
...+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456777799999999999955578888776554333333344577777875 4666666554 5999999888777
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E--eC
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 960 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~--~d 960 (1102)
..+. ....|.+|.+. .+.|+++=.+. |.|||++.-+. +.....-.+-...+.++.+++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 45678888885 45666665554 99999998554 3222222121234566666667789998 3 67
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe-EEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
|.|.+||+.+.+.+..+. .|.+.+.+++|++||.+|||+|+.|+ |||+.+.+|+.+..|+...+ + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999998887 89999999999999999999999997 89999999999999983333 2 3344
Q ss_pred EEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1040 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1040 ~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+++|+| |+.+|++.|..++|+||++++..
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 68999999999999999998766
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=7.6e-18 Score=184.62 Aligned_cols=253 Identities=18% Similarity=0.307 Sum_probs=191.3
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
+.+.++++|...|.|+.|...|.+ +++|+.|..|+||..+++.++. ...||.+.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhcc
Confidence 456778899999999999999997 9999999999999999998887 48999999999999
Q ss_pred ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE---e
Q 001311 417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F 493 (1102)
Q Consensus 417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~---~ 493 (1102)
+.+..++|+++.|..|++|.+.++..+. .+.||++.|++|+|+|- .+.+.||++++||.+-.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999988665 58899999999999984 4778999999999872111111 1
Q ss_pred ec-CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 494 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 494 ~~-h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
.. ...-+.++.| ..++..+.|++.|+.-..|........ ...+.-+..+.+
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~~lif~t~ssd-------------------- 363 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWR------SNLLIFVTRSSD-------------------- 363 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhhhh------ccceEEEecccc--------------------
Confidence 11 1233444444 455677999999999888865431110 000000011111
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccc
Q 001311 573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648 (1102)
Q Consensus 573 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 648 (1102)
...+.+++-.+..+++|++.+|.+.+.+.++.+ .+.-+.++| +.....+++.||...|||+-.+........+|
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh 438 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH 438 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence 013466677788999999999999999887766 566799999 55666688999999999998884444444443
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.6e-16 Score=144.61 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=174.0
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
.|.+-+++|.+++ |+.|..+|+|.+..+++--.-.. ...-........+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 4566789999996 99999999999999865211110 000011111357999999999998 55677765
Q ss_pred CCCeEEEEEccCCcee---eeEEE--eeccc-----cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 428 SRHIVQIYSYHGGDEV---RQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 428 ~d~~v~vwd~~~~~~~---~~~~~--l~~h~-----~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
. |.|+=|.+...... +...+ ...|. ..|+++-..|... -++.++.|+.++-||+++|+..++++||+
T Consensus 80 d-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 D-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred C-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 4 99999988653321 11100 11222 3589999998877 46666789999999999999999999999
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
+.|.++.-- .....+++|+.||++|+||.++.+....+..-... ..+..+-..-|.+++.+ ..++
T Consensus 157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wigala~~--edWl 221 (325)
T KOG0649|consen 157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWIGALAVN--EDWL 221 (325)
T ss_pred ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCceeEEEecc--CceE
Confidence 999998742 22357999999999999999998776655332110 11111122233344333 3567
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
++|+ ...+.+|++++.++...+....+ +..+.|. ...+++++..+.|.-|.+.
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEecccc---eeEeeee--cceEEEeccccceeeeeec
Confidence 6655 45799999999999888876655 6667774 4567777777788888654
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.9e-17 Score=181.51 Aligned_cols=281 Identities=17% Similarity=0.250 Sum_probs=201.4
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 527 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd 527 (1102)
.+.||...|+|+.|...|. ++++|+.|..++||.++++.++..+.||.+.|+.++.+ .+..++++++.|..|++|.
T Consensus 185 rLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs--~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS--SNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccc--hhhhhhhhcccCceEEEEe
Confidence 4789999999999999999 89999999999999999999999999999999999874 4447899999999999999
Q ss_pred cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC---C
Q 001311 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---G 604 (1102)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~ 604 (1102)
+..+..+..+.+|.+.|++++|+|- .+.+.||++++||.+- ......... .
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~-------------------------~sss~dgt~~~wd~r~-~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPR-------------------------ASSSDDGTCRIWDARL-EPRIYVPRPLKFT 314 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCcc-------------------------ccCCCCCceEeccccc-cccccCCCCCCcc
Confidence 9999999999999999988888873 4667899999999871 111110000 0
Q ss_pred CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001311 605 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 684 (1102)
Q Consensus 605 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1102)
....+.++.|-..+..+++++.|+.
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~e------------------------------------------------------- 339 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGE------------------------------------------------------- 339 (1113)
T ss_pred cccceeeeeccccccccccccCCcc-------------------------------------------------------
Confidence 0001112222222222222222222
Q ss_pred cccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEE
Q 001311 685 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 764 (1102)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~ 764 (1102)
-+.|.+.. +++
T Consensus 340 -----------------------------a~n~e~~~-----------------------l~~----------------- 350 (1113)
T KOG0644|consen 340 -----------------------------ARNHEFEQ-----------------------LAW----------------- 350 (1113)
T ss_pred -----------------------------cccchhhH-----------------------hhh-----------------
Confidence 22222110 000
Q ss_pred eeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCceeee
Q 001311 765 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMAT 842 (1102)
Q Consensus 765 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~~~~ 842 (1102)
+...+.-+..+.|- .+.+++- +-.+.+|++.+|+..+.
T Consensus 351 ----------------------------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~ 390 (1113)
T KOG0644|consen 351 ----------------------------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN 390 (1113)
T ss_pred ----------------------------------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhh
Confidence 00001111111111 2334444 67799999999999999
Q ss_pred ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 843 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 843 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
+.+|...+..+.++|-+.+...+++.||...|||+-.|..++. +.+|. .+..-+||+||..++....-|.+.|.....
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCC
Confidence 9999999999999997778888999999999999988766544 35554 456679999999999988889999987665
Q ss_pred Cc
Q 001311 922 WE 923 (1102)
Q Consensus 922 ~~ 923 (1102)
++
T Consensus 470 s~ 471 (1113)
T KOG0644|consen 470 SK 471 (1113)
T ss_pred Cc
Confidence 44
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.2e-17 Score=167.27 Aligned_cols=322 Identities=16% Similarity=0.200 Sum_probs=230.0
Q ss_pred EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525 (1102)
Q Consensus 447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~ 525 (1102)
..|.+|.+.|..|.|+..|. .|++|+.|..|.+||+.+++....+ .||...|....|-+..+...+++++.||.|++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 35889999999999999999 8999999999999999999887766 57988888888877777789999999999998
Q ss_pred EEcCCCCCe---eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311 526 WLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 526 wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
=.+...+.. ..+..|.+.|..++.-|+.. .-|+++++|+.+.-+|++.+.....+..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeee
Confidence 877654332 34456667777777776665 4589999999999999988765544432
Q ss_pred CCC-C---CCcCeEEEcCCC-CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001311 603 DGG-L---PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 677 (1102)
Q Consensus 603 ~~~-~---~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1102)
... . .....++..|.. ..+++++.|..+++||.+.-.+. ...+ .+. .|.+..
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h---------- 330 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH---------- 330 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc----------
Confidence 111 1 245678888854 48899999999999986543110 0000 000 011000
Q ss_pred ccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEe
Q 001311 678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 757 (1102)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 757 (1102)
+. ......|++++|+.++.-++++
T Consensus 331 --------------------------------------------------l~------~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 331 --------------------------------------------------LV------EDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred --------------------------------------------------cc------ccCcccceeEEecCCccceeee
Confidence 00 0134679999999999989999
Q ss_pred ecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE-ecCCCeEEEEeC-CeEEEEEcC
Q 001311 758 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMM 835 (1102)
Q Consensus 758 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~-s~d~~~las~sd-g~I~iwd~~ 835 (1102)
..|-.|+++.-..+..+ ......++ .......+++......|..+-| -|...|+++|+| |.|.||+-.
T Consensus 355 YnDe~IYLF~~~~~~G~----~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGS----EPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred ecccceEEeccccccCC----CCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 99999999854332210 00000000 0111111333223344666654 588999999997 899999999
Q ss_pred CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 836 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 836 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
+++.++-+.+...-|+||.-+| ---+||+.+-|..|+||.-.+.
T Consensus 425 t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 425 TGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence 9999999988777899999999 6779999999999999987543
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.6e-16 Score=166.58 Aligned_cols=277 Identities=18% Similarity=0.278 Sum_probs=183.5
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC--------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeC
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 519 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~ 519 (1102)
++..|.+.|.+++|.+-.. .|++++.|+++++|+++. -+++.+|.+|.++|.|+++ ..++..+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeecc
Confidence 4778999999999999888 799999999999999932 2567899999999999987 567789999999
Q ss_pred CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q 001311 520 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 599 (1102)
Q Consensus 520 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 599 (1102)
||+|+.|++........ .+. ... ....+.||.+ .++.++++....+|++++.||+++.|+...... .+
T Consensus 365 Dg~I~~w~~p~n~dp~d--s~d--p~v------l~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDD--SYD--PSV------LSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred CceeeeeccCCCCCccc--ccC--cch------hccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence 99999997753221110 000 000 1133455554 677778888888899999999999999876655 33
Q ss_pred EcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001311 600 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 679 (1102)
Q Consensus 600 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1102)
+........-.++.+-... ++....+.....+++.+. ...
T Consensus 433 f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~-ev~------------------------------------- 472 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDM-EVV------------------------------------- 472 (577)
T ss_pred cCCccccCCcceEeeccch--hHhhhhhcccccccchhh-hhh-------------------------------------
Confidence 3322211112233332211 111111111111111110 000
Q ss_pred ccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec
Q 001311 680 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 759 (1102)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 759 (1102)
..+.+.+. +.
T Consensus 473 ---------------------------------------------------------------s~~~~~~s-------~~ 482 (577)
T KOG0642|consen 473 ---------------------------------------------------------------SDLLIFES-------SA 482 (577)
T ss_pred ---------------------------------------------------------------hheeeccc-------cC
Confidence 00000000 00
Q ss_pred CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCc
Q 001311 760 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 838 (1102)
Q Consensus 760 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~ 838 (1102)
....+ ....+.-+...|.+.+.+++. |+.|+++|..++.
T Consensus 483 ~~~~~----------------------------------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 483 SPGPR----------------------------------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred CCccc----------------------------------------ccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 00000 122344556667777777777 8999999999999
Q ss_pred eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311 839 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 839 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
.+.....|...++++++.| +|-+|++|+.||.|++|.+....++.....|..
T Consensus 523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence 9999999999999999999 999999999999999999988777777666653
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=3.3e-14 Score=148.93 Aligned_cols=477 Identities=12% Similarity=0.108 Sum_probs=273.4
Q ss_pred CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE------cCCCCeeEEEEecCCCcE
Q 001311 406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF------SHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~------s~d~~~~~l~s~~~d~~i 479 (1102)
.|..-|.|+.|+.+...+.+++.+..+.-||+.+... .. +.-....|...-+ ...+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4666778999999888888776666555566654332 11 1111111111111 001111157888899999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
.+-+ +.++.-+.+..|.+.+.+-.|+ ++|.-|++++.||.|++|.-. +-...++......|.+++|.|+..
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~----- 158 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSN----- 158 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCC-----
Confidence 9998 8888888999999999998885 455679999999999999643 233333334445566666666554
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
+.+++. .+.+.|=-+.....+-..+.|.+ -|.++.|++....+++|+.|-..++||....
T Consensus 159 ---------------~vl~c~--g~h~~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~- 218 (737)
T KOG1524|consen 159 ---------------SIVFCQ--GGHISIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA- 218 (737)
T ss_pred ---------------ceEEec--CCeEEEeecccccceeEEeccCc--EEEEeecCccccceeecCCceeEEeecccCc-
Confidence 223333 34566656665555666666655 6899999999999999999999999995322
Q ss_pred cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311 640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 719 (1102)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 719 (1102)
.++ ..
T Consensus 219 ~Lf---------------------~S------------------------------------------------------ 223 (737)
T KOG1524|consen 219 NLF---------------------TS------------------------------------------------------ 223 (737)
T ss_pred ccc---------------------cC------------------------------------------------------
Confidence 110 00
Q ss_pred ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311 720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 799 (1102)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 799 (1102)
..|..+|++++|.|+ +.++.++.+ ++++=.
T Consensus 224 ----------------~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~-------------------------------- 253 (737)
T KOG1524|consen 224 ----------------AAEEYAITSVAFNPE-KDYLLWSYN-TARFSS-------------------------------- 253 (737)
T ss_pred ----------------Chhccceeeeeeccc-cceeeeeee-eeeecC--------------------------------
Confidence 237889999999999 444444333 343211
Q ss_pred cCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC-------Cceee------ee----------cCCCCCeeEEEE
Q 001311 800 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMA------TF----------MPPPPAATFLAF 855 (1102)
Q Consensus 800 ~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~-------~~~~~------~~----------~~~~~~i~~l~~ 855 (1102)
...+.|..++||+||..++.|. .|.+.+-.+-. ++... +. -.....|...++
T Consensus 254 ----p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~sL 329 (737)
T KOG1524|consen 254 ----PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFSL 329 (737)
T ss_pred ----CCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeeee
Confidence 1567799999999999999988 67654432211 11100 00 012334555554
Q ss_pred ecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC
Q 001311 856 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG 935 (1102)
Q Consensus 856 sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 935 (1102)
.- .+|+++. ...|++|.-......-.+.+....+.-+.-+ ..-+++ ....+|.++..++...... .+.|
T Consensus 330 ~Y---~hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~np----~~Pg 398 (737)
T KOG1524|consen 330 GY---GHLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLNP----RYPG 398 (737)
T ss_pred ce---eEEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecCC----CCCC
Confidence 43 3444443 3478888766544444444444433222111 111222 2233566666655221111 0111
Q ss_pred CCCCCCCCcEEEEccCCcEEEE---EeCCeEEEEEc-CCceEeeeeccCCCCCCeeEEEEcC----CCcEEEEEeCCCeE
Q 001311 936 RTPTAQSDTRVQFHQDQIHFLV---VHETQLAIFET-TKLECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATV 1007 (1102)
Q Consensus 936 ~~~~~~~v~~~~~spdg~~l~~---~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~l~~sp----d~~~l~s~s~Dg~I 1007 (1102)
... .....-..|-....|+. ++...+.+||. .+|+....-..-.|...|..++... +.+.++.-...+.+
T Consensus 399 ~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl 476 (737)
T KOG1524|consen 399 SQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDL 476 (737)
T ss_pred ccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcE
Confidence 110 01111122222334444 23456788888 6776544322113566676666643 55667777777777
Q ss_pred EEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1008 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1008 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+|=.+.+.-...++. .-| .-|. .++|+ |-.-+++|-.|+.+.||-.++.-
T Consensus 477 ~ItsvKrfgkee~I~-----KiG---TmVh--tLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 477 FITSVKRFGKEEEIY-----KIG---TMVH--TLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred EEEeehhcCchhhhh-----hhh---hhhh--hhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 775543321111111 111 0022 67887 45678899999999999986643
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.3e-15 Score=166.84 Aligned_cols=259 Identities=15% Similarity=0.179 Sum_probs=174.0
Q ss_pred ceEEEEEcc--CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311 741 KISRLIFTN--SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 818 (1102)
Q Consensus 741 ~i~~~~~s~--~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~ 818 (1102)
.|+.+.+-+ |...+++++.||.|+||+--.... ....-+.-|..-++.+.. ..+.-.-+.|....
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------~~~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKW------KKPELVTAWSSLSDQLPG-------ARGTGLVVDWQQQS 1177 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEeccccccc------CCceeEEeeccccccCcc-------CCCCCeeeehhhhC
Confidence 444555433 344677777888888886311100 000012233333333222 11112345666655
Q ss_pred CeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeeeecccccc-
Q 001311 819 SYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR- 892 (1102)
Q Consensus 819 ~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~- 892 (1102)
.+|.+++ -..|+|||...-.+...+.. ....|+++.-+-..|++++.|..||.|++||.+.. ..+...+.|+..
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 5666655 57899999988777776653 34457887766556899999999999999998763 356677889887
Q ss_pred -ceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001311 893 -ITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 970 (1102)
Q Consensus 893 -V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~ 970 (1102)
|..+.+-+.|- .|++|+.||.|++||+..........+.. +....+..+++..+++...+|+|+.+.|+||++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 99999988764 49999999999999998843222111111 11111247999999999999998779999999864
Q ss_pred ceEeeeeccC-----CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311 971 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 971 ~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
.+ +..+... ...+.+.|++|.|-.-+||+|+.|.+|.||..+...
T Consensus 1335 ~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 33 3332221 125678999999999999999999999999877654
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.6e-16 Score=161.35 Aligned_cols=275 Identities=12% Similarity=0.156 Sum_probs=205.0
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--C
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 419 (1102)
+-.|.+.|..|.|+..|.. |++|+.|..|.+||+..++.... ...||...|....|-| +
T Consensus 138 L~~H~GcVntV~FN~~Gd~-l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDV-LASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred ccCCCCccceeeecccCce-eeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCC
Confidence 3459999999999999994 99999999999999998877654 4789999999999998 6
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---ecC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH 496 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---~~h 496 (1102)
.+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+... .|.+++.|+.+.-.|++.+.....+ ..+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 678999999999999887655445545568889999999999999887 7999999999999999987654433 223
Q ss_pred CC---CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 497 EA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 497 ~~---~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
.. ...+++..+.. ...+++++.|..+++||.+.-..... .+.+. .|.|. .+.......|++++++.+
T Consensus 278 ~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHD 347 (559)
T ss_pred CccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCC
Confidence 33 34566665543 35899999999999999875332210 00011 11111 111233346788888877
Q ss_pred CCEEEEEeCCCeEEEEECCC--c----------ceEEE-EcCCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCCc
Q 001311 574 KNRFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
+.-+++...|-.|++++-.- | ..+.. +++|.....|.++-| .|...++++|+.-|.|.||+-.++
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~- 426 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG- 426 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-
Confidence 77788888888899996432 2 12233 677777777888886 568899999999999999998887
Q ss_pred cceeeccc
Q 001311 640 RLLRTFEN 647 (1102)
Q Consensus 640 ~~~~~~~~ 647 (1102)
++++.+++
T Consensus 427 eii~~Meg 434 (559)
T KOG1334|consen 427 EIIRFMEG 434 (559)
T ss_pred HHHHHhhc
Confidence 66665554
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.7e-14 Score=140.01 Aligned_cols=243 Identities=16% Similarity=0.228 Sum_probs=175.9
Q ss_pred CCCCeeEEEEecCCC-----eEEEEeCCeEEEEEcCC--Cce--eeee-----cCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001311 805 PEEAVPCFALSKNDS-----YVMSASGGKISLFNMMT--FKT--MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDS 870 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~-----~las~sdg~I~iwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg 870 (1102)
|..+++.+.|.|+.+ +||+ ++..+|+|.+.. .+. ...+ ..+..++++..|..-+.++|.+.+-|-
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 889999999999874 4444 456799999873 221 1112 234568999999988899999999999
Q ss_pred cEEEEEeecce---eeeeeccccccceeEEEecCC-CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEE
Q 001311 871 SIQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 946 (1102)
Q Consensus 871 ~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 946 (1102)
+-.|||++++. ...+|-+|..+|..|+|..++ +.+|++|.||.||+||+...+-... +.+.. .+..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI----IYE~p-~~~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI----IYEDP-SPSTPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE----EecCC-CCCCcceee
Confidence 99999999863 467789999999999999865 5789999999999999987442111 11111 112467888
Q ss_pred EEcc-CCcEEEE-E-eCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311 947 QFHQ-DQIHFLV-V-HETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 947 ~~sp-dg~~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
+|++ |-+++|+ + ....|.|.|++.- ..+..+ .+|.+.|+.++|.|. ...|.+|++|..+.|||+...-.-...
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence 8887 5677887 4 5568999999753 333333 489999999999995 457999999999999999765331111
Q ss_pred CC-CcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEE
Q 001311 1022 NP-SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1062 (1102)
Q Consensus 1022 ~~-~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~v 1062 (1102)
.+ ..|. ..++|. .+.|++..++.++.+. ++++.+
T Consensus 327 dPilay~----a~~EVN--qi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 327 DPILAYT----AGGEVN--QIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred Cchhhhh----ccceee--eeeecccCCCEEEEEe-cCeeeE
Confidence 11 1122 233466 8999988888888876 444443
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=6.7e-15 Score=165.38 Aligned_cols=263 Identities=20% Similarity=0.268 Sum_probs=189.8
Q ss_pred cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
.-...+.-...|+|++|+|....+++.|..+|.|.+||+..+..... .........|..+|+.+.|-
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEe
Confidence 34445667889999999999998999999999999999987765210 01111456899999999998
Q ss_pred cCCC--eEEEEECCCeEEEEEccCCceeeeEEEee---------ccccCEEEEEEcCCCCeeEEEEecCCCcEEE---Ee
Q 001311 418 PDGS--LFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKV---WD 483 (1102)
Q Consensus 418 pdg~--~las~~~d~~v~vwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v---Wd 483 (1102)
.+-. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.. ++
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence 7544 49999999999999876432211100010 11246899999988776 6888999999877 33
Q ss_pred CCCCe-----eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC-CCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 484 ATNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 484 ~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
.+.+. .+..+..|.++|+++.+++-.. ..+.+++ |-+|++|.-. ....+..+..+...+.+++|||-..
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--- 454 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--- 454 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc---
Confidence 33222 2335567899999998866543 3444554 9999999887 5566666666666677777777654
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc--eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
..|+++..||.|.+||+.... ++.+.... ....+.+.|++.|+.|++|...|.+++|++
T Consensus 455 -----------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 455 -----------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -----------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 357888899999999997544 33333323 335667888889999999999999999998
Q ss_pred cCC
Q 001311 636 SDG 638 (1102)
Q Consensus 636 ~~~ 638 (1102)
...
T Consensus 516 ~~~ 518 (555)
T KOG1587|consen 516 SES 518 (555)
T ss_pred Cch
Confidence 644
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=8.8e-15 Score=141.97 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=184.9
Q ss_pred eccCCCCeeEEEEecCCC----eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 342 TLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~----~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
.+.|.-+++.+.|.||.. .||||.+ ..+++|.+...+..... ...+....-..+..++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 367999999999999873 3577655 78999999742211110 0011111234567799999999
Q ss_pred c-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---
Q 001311 418 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--- 493 (1102)
Q Consensus 418 p-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~--- 493 (1102)
. |-++|.+.+-|-+..|||++++..-.....|-.|...|..|+|...+.+ ++++.|.||+||++|++..+--..+
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 8899999999999999999997431122247789999999999998877 8999999999999999876543333
Q ss_pred ecCCCCeEEEeeeecCCccEEEEEeCC-CeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311 494 EGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 571 (1102)
.....+...++|+. .+-+++++-..| ..|.+-|++... ....+..|...|..++|.|...
T Consensus 239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~----------------- 300 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS----------------- 300 (364)
T ss_pred CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----------------
Confidence 22234566678764 444678877665 568899998764 4567889999999999998876
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcce------EEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001311 572 TTKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 572 ~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 632 (1102)
..++++|+|..+-+||+...-. +..+. ....|+.+.|++ .+.+++++.. +.+.+
T Consensus 301 ---~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 ---SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ---ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 6799999999999999975321 22222 234699999997 6778887764 34443
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=4.7e-14 Score=158.64 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=190.0
Q ss_pred CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee--eEE----eecCCCCeEEE
Q 001311 430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV 503 (1102)
Q Consensus 430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~--~~~----~~~h~~~v~~v 503 (1102)
+.+.||+++...... ..+ .-...|.|++|+|.... +++.|..+|.|.+||++.+.. ... ...|..++..+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999998863222 223 34678999999999887 789999999999999997765 222 23588889999
Q ss_pred eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 583 (1102)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 583 (1102)
.|.....+.-+++++.||.|..|+++........ +....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~---------------------------------------~~~~~-- 336 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG---------------------------------------LLLES-- 336 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhh---------------------------------------ccccc--
Confidence 8877665566888888999999976643221100 00000
Q ss_pred CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311 584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662 (1102)
Q Consensus 584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1102)
... .+ .. ......++++.|.+ +...+++|+.+|.|.--+.........
T Consensus 337 -~~~-----~~---~~---~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------- 385 (555)
T KOG1587|consen 337 -KKH-----KG---QQ---SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------- 385 (555)
T ss_pred -ccc-----cc---cc---cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence 000 00 00 01123467788888 667788999999886533211100000
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311 663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 742 (1102)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 742 (1102)
T Consensus 386 -------------------------------------------------------------------------------- 385 (555)
T KOG1587|consen 386 -------------------------------------------------------------------------------- 385 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC-eE
Q 001311 743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YV 821 (1102)
Q Consensus 743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l 821 (1102)
+.|.+... . ..|.++|.++.++|=+. .+
T Consensus 386 --~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 386 --VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred --cccccccc-----------------------------------------------c--cccCcceEeeecCCCcccee
Confidence 00000000 0 01566677777776554 33
Q ss_pred EEEeCCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc--eeeeeeccccccceeEEE
Q 001311 822 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAF 898 (1102)
Q Consensus 822 as~sdg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~ 898 (1102)
.+++|-+++||... ....+..+..+...+++++|||.....++++..||.|.+||+... +.+....-+....+.+.|
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 44448888888876 555556666677779999999977789999999999999999753 344444445666778889
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCC
Q 001311 899 SHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 899 s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
+++|+.|+.|+..|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999999964
No 205
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=2.3e-12 Score=146.96 Aligned_cols=149 Identities=17% Similarity=0.315 Sum_probs=123.4
Q ss_pred EEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeE
Q 001311 353 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 432 (1102)
Q Consensus 353 ~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v 432 (1102)
-++++.-| +++|+.-+.|++|++.-.+... .+.||.+.|.++.||-||+++++.|.|.++
T Consensus 140 g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi 199 (967)
T KOG0974|consen 140 GDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSI 199 (967)
T ss_pred eccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcce
Confidence 45666665 8999999999999987222111 378999999999999999999999999999
Q ss_pred EEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC-CeEEEeeeecCCc
Q 001311 433 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-PVYSVCPHHKENI 511 (1102)
Q Consensus 433 ~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~ 511 (1102)
++|++++.+.... +.-+|+..|+.+.|.|. . ++|++.|.+.++|+ ..++.+.++.+|.+ .|..+... .+.
T Consensus 200 RlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n-~---i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~--~~~ 270 (967)
T KOG0974|consen 200 RLWPIDSREVLGC--TGFGHSARVWACCFLPN-R---IITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVP--IGV 270 (967)
T ss_pred eeeecccccccCc--ccccccceeEEEEeccc-e---eEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEc--CCc
Confidence 9999999887652 46689999999999988 3 99999999999997 55666778888864 47777753 444
Q ss_pred cEEEEEeCCCeEEEEEcCC
Q 001311 512 QFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~ 530 (1102)
..++|++.|+.+++|++..
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEeeccCcchhhhhhhc
Confidence 7899999999999998754
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.9e-15 Score=153.82 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=159.6
Q ss_pred eEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311 810 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 888 (1102)
Q Consensus 810 ~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 888 (1102)
.+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.|+| |+++|++-+.| ..+||+..++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999977766643
Q ss_pred --ccccceeEEEecCC-----CEEEEEcCCCcEEEEEcCCCcccce-eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001311 889 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKN-RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H 959 (1102)
Q Consensus 889 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~ 959 (1102)
-......+.|+.|+ ..++....-+.|+.|++........ +..+....+ ..|++++.|+||+++|.+ .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 22345667888877 3344445556788877765332110 111111111 378999999999999996 8
Q ss_pred CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 960 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999887665 58999999999999999999999999999887654
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=5.8e-14 Score=161.38 Aligned_cols=268 Identities=15% Similarity=0.161 Sum_probs=178.0
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
+.++..|...|..++.+++..-+++|||.||+|+|||...-..-. ..+ ....++.--...+.++.+.+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~-----------rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA-----------RSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-cee-----------eeeEEEeccCCceEEEEecc
Confidence 455666999999999988774469999999999999986422110 000 01112333567899999999
Q ss_pred CCCeEEEEECCCeEEEEEccCC--ceee--eEEE--eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~--~~~~--~~~~--l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
.|..+|+++.||.|++.+++.. .... +... +.....-|..-+|....+...++.+..-+.|..||+++...+.+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1111 1111 11122234455565544433677788889999999998776665
Q ss_pred ee--cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCC-CeeeEEEEccCCceeeeccccCceeEEE
Q 001311 493 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 493 ~~--~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
++ ...+.|++++. ++.+.++++|+..|.+.+||++-...+.....+. .++..+...+-.
T Consensus 1189 lk~~~~hG~vTSi~i--dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVI--DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEe--cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 53 34577999997 4556799999999999999998766655443322 234444333322
Q ss_pred EcCCCCEEEEEe--CCCeEEEEECCCcceEEEEcCCCC-----------------CCCcCeEEEcCCCCEEEEEECCCcE
Q 001311 570 FDTTKNRFLAAG--DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 630 (1102)
Q Consensus 570 ~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i 630 (1102)
+.....++++ ..+.|.+|++.+|.+...+-.... ........+...+..+.+|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 2223344443 578899999999977766643311 0111223334456789999999999
Q ss_pred EEEEccCC
Q 001311 631 KILATSDG 638 (1102)
Q Consensus 631 ~iwd~~~~ 638 (1102)
+.||....
T Consensus 1329 R~wD~~~p 1336 (1431)
T KOG1240|consen 1329 RKWDPTRP 1336 (1431)
T ss_pred eeccCCCc
Confidence 99998776
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=9.1e-14 Score=159.82 Aligned_cols=214 Identities=11% Similarity=0.119 Sum_probs=152.1
Q ss_pred ccCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCC----ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311 403 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 477 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 477 (1102)
.+..|...|..++.+++. .++++||.||+|++||...- ...+...++......+.++.+.+.+. .++.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 377899999999998854 99999999999999997631 22333334444567899999999999 588889999
Q ss_pred cEEEEeCCC--Ce-----eeEEeec-CCCCeEEE-eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311 478 TIKVWDATN--GA-----KQYIFEG-HEAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 548 (1102)
Q Consensus 478 ~i~vWd~~~--~~-----~~~~~~~-h~~~v~~v-~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1102)
.|++.++.. .+ +.+.... ..+.+.++ ++........++.+..-+.|..||++.......++..
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-------- 1192 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-------- 1192 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC--------
Confidence 999999876 22 1222222 23334444 3332222237888888999999999876655443321
Q ss_pred EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC---CCEEEEEE
Q 001311 549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVST 625 (1102)
Q Consensus 549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~ 625 (1102)
...+.+++++++|.+++++.|...|.+.+||++-+.++.......+ ..+..+..+|- ....++++
T Consensus 1193 -----------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1193 -----------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred -----------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEec
Confidence 1123566666777778999999999999999999988888764443 56787877763 24555444
Q ss_pred --CCCcEEEEEccCC
Q 001311 626 --NDNGIKILATSDG 638 (1102)
Q Consensus 626 --~dg~i~iwd~~~~ 638 (1102)
..+.|.+|++.+|
T Consensus 1261 ~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETG 1275 (1431)
T ss_pred ccCCCceeeeecccC
Confidence 4788999999988
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.5e-15 Score=151.80 Aligned_cols=200 Identities=17% Similarity=0.162 Sum_probs=151.7
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeee
Q 001311 851 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 930 (1102)
Q Consensus 851 ~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 930 (1102)
.+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+..++-...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---- 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---- 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh----
Confidence 7899999 89999999999999999988877778888899999999999999999999999 79999999873211
Q ss_pred ecCCCCCCCCCCCcEEEEccCC---c-EEEEE--eCCeEEEEEcCCceE---eeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311 931 QIPTGRTPTAQSDTRVQFHQDQ---I-HFLVV--HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus 931 ~~~~~~~~~~~~v~~~~~spdg---~-~l~~~--~d~~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
.... .........+.|+.|+ . ++++. .-+.|+.||+..... .+....-.-...|++++.|+||+++|.|
T Consensus 222 -~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 222 -RKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -hcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1110 1111356788898887 3 33332 445677766543222 1111111124589999999999999999
Q ss_pred eCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1002 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1002 s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
+.||.|.|++..+.+.+.-++ ..|. ..++.+.|+| |.+++++.+.|....|..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH~---~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAHL---GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhhe---eeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999999888776544 3332 3445999999 6899999999999999998653
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.7e-14 Score=142.25 Aligned_cols=209 Identities=15% Similarity=0.187 Sum_probs=163.0
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-C
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-N 486 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~ 486 (1102)
..+|+|.+|++|+..+|++-....|.||...+.+.....+++..|...|++|.|+|... .|++|+.|..-+||... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 46899999999999999999999999999998887777888999999999999999998 69999999999999984 3
Q ss_pred Ce--eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311 487 GA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564 (1102)
Q Consensus 487 ~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 564 (1102)
++ +.-.+..|....+++.|++.. +.|++|+.-..|.+|-++....=..-+. +.......
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKh-----------------ikkPirSt 148 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKH-----------------IKKPIRST 148 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhh-----------------hCCccccc
Confidence 33 344556688899999996555 6899999999999997764332111100 11111235
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECC-----C-------------cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311 565 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
+.+++|+|++-++++|+.|+..|++..- . |.++..+. ...+.+..+.|+|+|..|+-.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecC
Confidence 6778888888889999999999998642 1 11222222 22347899999999999999999
Q ss_pred CCcEEEEEccCCc
Q 001311 627 DNGIKILATSDGI 639 (1102)
Q Consensus 627 dg~i~iwd~~~~~ 639 (1102)
|..+.+-|.....
T Consensus 227 ds~v~~~da~~p~ 239 (361)
T KOG1523|consen 227 DSTVSFVDAAGPS 239 (361)
T ss_pred CCceEEeecCCCc
Confidence 9999999987664
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=8.6e-13 Score=133.16 Aligned_cols=305 Identities=14% Similarity=0.190 Sum_probs=198.1
Q ss_pred ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311 739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 818 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~ 818 (1102)
...+..+.|..+...|..|+.|| .++|+.+.... . .........|..+-|+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----------------------~---~~~~~~~~~IvEmLFSSS- 57 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----------------------C---FSKDTEGVSIVEMLFSSS- 57 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----------------------h---hcccCCCeEEEEeecccc-
Confidence 34566677888888777777775 35555422110 0 000002333555555544
Q ss_pred CeEEEEe--C-CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc---cccc
Q 001311 819 SYVMSAS--G-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKR 892 (1102)
Q Consensus 819 ~~las~s--d-g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~ 892 (1102)
++|..+ + ..+++.+.+....+..+. ...+|.++.+.. +.|+++-++ .|+|||+++-+++.++.. +...
T Consensus 58 -LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 58 -LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred -eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccc
Confidence 555544 2 569999998877777665 456799999975 455555544 499999999998887753 4555
Q ss_pred ceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC-C-eEEEEEc
Q 001311 893 ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE-T-QLAIFET 968 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d-~-~i~iwd~ 968 (1102)
+.++++++.+.+||.-+ ..|.|.+||..+-+. ......|. +.+.+++|+++|.+||++++ | -||||.+
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-----v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-----VNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEccccee-----eeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence 66677777777998543 358899999987432 33333444 48999999999999999744 4 5899999
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC--------------CCcccCCCCC--
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN--------------PSAYLPAGVS-- 1032 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~--------------~~~~~~~gh~-- 1032 (1102)
.+|+.+..|+.+.-...|.+++|+||+.+|++.+..++|.||.++.-..-..-. ...|+|..-.
T Consensus 204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~ 283 (391)
T KOG2110|consen 204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV 283 (391)
T ss_pred CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence 999999999865446679999999999999999999999999886543111000 0001111100
Q ss_pred -------------CCcccceEEEecC-CCCCEEEEEecCCcEEEEeccCCC--cccccCCCCCCCCCCC
Q 001311 1033 -------------SSNVHPLVIAAHP-QEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSS 1085 (1102)
Q Consensus 1033 -------------~~~v~~~~v~f~p-~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~~~~~~~~~~ 1085 (1102)
.....- .+++.+ +....+..++.||.++.+.++-.+ +.+-+.+-+-.|.+.+
T Consensus 284 ~~~~R~FAt~~l~~s~~~~-~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t 351 (391)
T KOG2110|consen 284 LDQSRKFATAKLPESGRKN-ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDT 351 (391)
T ss_pred hhhccceeEEEccCCCccc-eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcccc
Confidence 000000 233332 245788889999999999987643 4444443443444433
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=2.7e-12 Score=146.47 Aligned_cols=196 Identities=14% Similarity=0.203 Sum_probs=153.0
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC-----CeEEEEEccCCCe
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGSL 422 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 422 (1102)
.|....+.-+.+. ++.+..++.+.|||+..+..... ..+.. ...-+-++++.-+
T Consensus 89 wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 3444555555564 88888889999999987655432 11111 2233456778889
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE-EeecCCCCeE
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVY 501 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~-~~~~h~~~v~ 501 (1102)
+++|+.-+.|.+|+..... . ...+.||.+.|.++.|+.||+ ++++.|+|+++|+|++++++... +.-+|...|+
T Consensus 148 i~~gsv~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999988322 1 114889999999999999999 89999999999999999998876 7778999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
.++|.+. .+++++.|-+.++|+...... ..+.+|....++.+++.++...+++++
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTGG 277 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEeec
Confidence 9998543 899999999999996553221 245566667888888888888999999
Q ss_pred CCCeEEEEECCCc
Q 001311 582 DDFSIKFWDMDSV 594 (1102)
Q Consensus 582 ~dg~i~iwd~~~~ 594 (1102)
.|+.+++|++...
T Consensus 278 ~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 278 NDSTLKLWDLNGR 290 (967)
T ss_pred cCcchhhhhhhcc
Confidence 9999999998653
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5e-15 Score=155.43 Aligned_cols=238 Identities=11% Similarity=0.154 Sum_probs=171.2
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--C
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 419 (1102)
+.+|++.|+|++|+.||. +|++|+.|-.+.|||+...+.++. +-.||...|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 568999999999999999 599999999999999998777775 5789999999999999 7
Q ss_pred CCeEEEEECCCeEEEEEccCCc-------eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--- 489 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~--- 489 (1102)
.+++++|..|..|+|+|+...+ ...+...+..|...|.-|+-.|++.+ .+.+++.||+|+-+|++....
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998421 12233346679999999999999966 899999999999999986321
Q ss_pred ----eE---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee-----cCCCCeeeEE-EEccCCcee
Q 001311 490 ----QY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTM-AYSADGTRT 556 (1102)
Q Consensus 490 ----~~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~-~~s~~~~~~ 556 (1102)
.. .+....-...++.+++... .+|+.|+.|-..++||.+...+...- ..+.....++ -|+|.+-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 11 1111222345666665443 79999999999999996432221110 0111112222 234444322
Q ss_pred eeccccCc---eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311 557 YQGFRKRS---LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 600 (1102)
Q Consensus 557 ~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 600 (1102)
..+..... .+-++|+|+|..|+..-..-.|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 33322223 455789999988877666668999999887765544
No 214
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.59 E-value=1.1e-10 Score=121.24 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=108.0
Q ss_pred cccceEEEEEccCCceEEEeecCc-eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 738 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
+...|.-..+.-++..++.+..|| .+-|++. .++.+.... ..-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEee----CCccceEEEEEcC
Confidence 344566666666666788888887 7777765 333332221 1456799999999
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeeeeccccc
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
||++++++. ...|.+.|+.++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 57899999999887665565667899999999 999999998776 78999999888654432 333
Q ss_pred cceeEEEecCCCEEEEEcC
Q 001311 892 RITGLAFSHALNVLVSSGA 910 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~ 910 (1102)
.=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3456789999999876543
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=3.6e-13 Score=133.17 Aligned_cols=241 Identities=14% Similarity=0.194 Sum_probs=169.2
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCcEEE-EEeCC------CcEEEEEee
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIA-IGMDD------SSIQIYNVR 878 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la-sg~~d------g~v~vwd~~ 878 (1102)
...+++|+.|..-+++|.|...+||+.+-.+.....+.+.+ .+..+-|- .++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence 35569999999999999998899999876444332222222 23333332 23444 34333 489999966
Q ss_pred cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-
Q 001311 879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 957 (1102)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~- 957 (1102)
..+++.++. ...+|.+|.+++| .||+.- .+.|.||.....-.. ...+...... ..+.+++=+.+..+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEcC
Confidence 677777776 6788999999866 455544 567999998853221 1222222211 12233333334455555
Q ss_pred E-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe-EEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311 958 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus 958 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
| .-|+|+|-|+...+.-......+|.+.|.|++++-+|.++||+|..|+ |||||..+|.+++.++ .|.....
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~ 228 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRAD 228 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchhe
Confidence 5 669999999987665322333489999999999999999999999998 8999999999999887 3434444
Q ss_pred ccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1036 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1036 v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
++ +++|+| |..+|++.|+-|+|+|+.+....
T Consensus 229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 77 999999 68999999999999999997755
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=2e-12 Score=142.38 Aligned_cols=326 Identities=10% Similarity=0.102 Sum_probs=198.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001311 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 592 (1102)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 592 (1102)
++++-..++.|.+.|..+.+....+.........+.+++| ++++++++.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------gr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------GRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------SSEEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------CCEEEEEcCCCeEEEEECC
Confidence 3456667899999999987777766654433333444444 4578888899999999999
Q ss_pred CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhH
Q 001311 593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 671 (1102)
Q Consensus 593 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1102)
+++.+..+..... ..++++++||++++++. ..+.+.++|..+. +.++.+.......
T Consensus 67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~------------------- 123 (369)
T PF02239_consen 67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV------------------- 123 (369)
T ss_dssp SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence 9999999875433 67899999999998775 5899999999887 5555443211100
Q ss_pred hhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCC
Q 001311 672 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 751 (1102)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 751 (1102)
.....++..+..++..
T Consensus 124 ----------------------------------------------------------------~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 124 ----------------------------------------------------------------DGPESRVAAIVASPGR 139 (369)
T ss_dssp ----------------------------------------------------------------TTS---EEEEEE-SSS
T ss_pred ----------------------------------------------------------------cccCCCceeEEecCCC
Confidence 0023466777778887
Q ss_pred ceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCe
Q 001311 752 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK 828 (1102)
Q Consensus 752 ~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~ 828 (1102)
..++..-.| +.|.+-|+... ..+....+ ..........|+|++++++++. ++.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~---------------------~~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDP---------------------KNLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTS---------------------SCEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEEccCCeEEEEEeccc---------------------cccceeee---cccccccccccCcccceeeecccccce
Confidence 766655554 66655554221 00000001 0234566789999999988875 688
Q ss_pred EEEEEcCCCceeeeecC----CCCCeeEE-------EEecC-CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeE
Q 001311 829 ISLFNMMTFKTMATFMP----PPPAATFL-------AFHPQ-DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 896 (1102)
Q Consensus 829 I~iwd~~~~~~~~~~~~----~~~~i~~l-------~~sp~-d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1102)
|-++|.++++.+..+.. |......+ .|... .+...++.-....+.+||..+.+.++++...... .-+
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 99999999887765432 33333222 12110 2222222223346667888889999999877666 678
Q ss_pred EEecCCCEEEEE----cCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEcC
Q 001311 897 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETT 969 (1102)
Q Consensus 897 ~~s~d~~~l~s~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~d~~i~iwd~~ 969 (1102)
..+|++++|.+. ...++|.|+|.++.+... .+....+ ..+..+.|++||+++.++ .++.|.+||..
T Consensus 275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred ecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 889999999988 455889999999864311 1111111 137899999999988774 34489999999
Q ss_pred CceEeeeec
Q 001311 970 KLECVKQWV 978 (1102)
Q Consensus 970 ~~~~~~~~~ 978 (1102)
+.+.+..+.
T Consensus 348 Tl~~~~~i~ 356 (369)
T PF02239_consen 348 TLKEKKRIP 356 (369)
T ss_dssp TTEEEEEEE
T ss_pred CcEEEEEEE
Confidence 999988765
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=1.6e-12 Score=143.10 Aligned_cols=323 Identities=14% Similarity=0.108 Sum_probs=192.9
Q ss_pred eeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeE
Q 001311 467 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 546 (1102)
Q Consensus 467 ~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1102)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+...++... .....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcce
Confidence 345677788999999999999999999865443233444 677889999999999999999998766655432 23344
Q ss_pred EEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCC-----CCCcCeEEEcCCCCE
Q 001311 547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCL 620 (1102)
Q Consensus 547 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~ 620 (1102)
+++++| |++++++. .++.+.++|.++.+.+..+...+. ...+..+..++....
T Consensus 83 i~~s~D---------------------G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 83 IAVSPD---------------------GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp EEE--T---------------------TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred EEEcCC---------------------CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 555554 45676654 789999999999999888764321 224556777887775
Q ss_pred EEEEEC-CCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCcccc
Q 001311 621 LAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 699 (1102)
Q Consensus 621 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1102)
+++.-. .+.|.+.|..+.........
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~~~i----------------------------------------------------- 168 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKVTTI----------------------------------------------------- 168 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEEEEE-----------------------------------------------------
T ss_pred EEEEEccCCeEEEEEeccccccceeee-----------------------------------------------------
Confidence 555544 47777777654411110000
Q ss_pred CCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec-CceEEeeeccccccCCCCc
Q 001311 700 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGK 778 (1102)
Q Consensus 700 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~ 778 (1102)
+ .........|+|++++++++.. +..+-++|..+...
T Consensus 169 ------------------~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~----- 206 (369)
T PF02239_consen 169 ------------------K-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL----- 206 (369)
T ss_dssp ------------------E---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred ------------------c-------------------ccccccccccCcccceeeecccccceeEEEeeccceE-----
Confidence 0 1123456788999998777544 46777777643211
Q ss_pred ccccccceeccCCCccccccccCCCCCCCCeeE-------EEE--ecCCCeEEEE-eCCeEEEEEcCCCceeeeecCCCC
Q 001311 779 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-------FAL--SKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPP 848 (1102)
Q Consensus 779 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~-------l~~--s~d~~~las~-sdg~I~iwd~~~~~~~~~~~~~~~ 848 (1102)
+..+..|.. .|..+... ..| ...+...++. +.+.+.+|+..+++.++++....+
T Consensus 207 --------v~~i~~g~~--------p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 207 --------VALIDTGKK--------PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp --------EEEEE-SSS--------BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred --------EEEeecccc--------ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 111111110 01222211 112 2333343222 345677899999999999987766
Q ss_pred CeeEEEEecCCCcEEEEE----eCCCcEEEEEeecceeeeeecccc-ccceeEEEecCCCEEEEEcCC--CcEEEEEcCC
Q 001311 849 AATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDG 921 (1102)
Q Consensus 849 ~i~~l~~sp~d~~~lasg----~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~ 921 (1102)
. ..+..+| +++++.+. ...++|.|+|..+.+.+..+.... ..+..+.|++||+++..+..+ +.|.|||..+
T Consensus 271 g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 271 G-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp S---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred c-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 6 8888899 89999887 455899999999988877775332 358899999999977655444 3699999999
Q ss_pred Ccccc
Q 001311 922 WEKQK 926 (1102)
Q Consensus 922 ~~~~~ 926 (1102)
.+...
T Consensus 349 l~~~~ 353 (369)
T PF02239_consen 349 LKEKK 353 (369)
T ss_dssp TEEEE
T ss_pred cEEEE
Confidence 76543
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.5e-13 Score=157.22 Aligned_cols=223 Identities=13% Similarity=0.125 Sum_probs=146.2
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecC--CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
...+..|...+.+.+|||||++|+.++..+ ..|++||+.+++..... .+.+| ..+++|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~w 255 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAF 255 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeE
Confidence 344556888899999999999854443322 47999999887643210 12333 346899
Q ss_pred ccCCCeEEEEE-CCCeEEEE--EccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEE
Q 001311 417 SPDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYI 492 (1102)
Q Consensus 417 spdg~~las~~-~d~~v~vw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~ 492 (1102)
||||++|+.++ .+|.+.|| |+.++... .+..|...+...+|+|||+. +++++..++...||++... .....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEE
Confidence 99999998865 67866655 56565432 35667778899999999995 3444556788888886532 22333
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
+ ++.. ....| +++|++|+..+.++ +.+||+.++......... . .....|+|
T Consensus 331 l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~---------------------~~~~~~sP 381 (429)
T PRK01742 331 V-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--L---------------------DESPSISP 381 (429)
T ss_pred e-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--C---------------------CCCceECC
Confidence 3 3443 33455 56778888887765 555898765432211110 0 12345777
Q ss_pred CCCEEEEEeCCCeEEEEEC--CCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311 573 TKNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 617 (1102)
Q Consensus 573 ~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 617 (1102)
++++|+.++.++.+.+|++ .+|+.+..+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 7778999988888888875 35777777765443 5778899884
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.3e-13 Score=153.46 Aligned_cols=225 Identities=14% Similarity=0.131 Sum_probs=150.1
Q ss_pred CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceee
Q 001311 368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 444 (1102)
Q Consensus 368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~ 444 (1102)
+..|.|||...... . .+..|...|.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~-~-------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ-F-------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCc-e-------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 46899999875442 2 256778899999999999999988654 479999999876432
Q ss_pred eEEEeeccccCEEEEEEcCCCCeeEEEE-ecCCCcEEEE--eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe-CC
Q 001311 445 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LD 520 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s-~~~d~~i~vW--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~d 520 (1102)
+..+.+| ..+++|+|||+. |+. .+.+|.+.|| |+.+++ +..+..+...+....|+ +||+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2234444 446899999994 444 4567765555 665555 45566677777777875 5566665544 57
Q ss_pred CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311 521 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 600 (1102)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 600 (1102)
|...+|+++..........+. . ....|+|+|++++.++.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~---------------------~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGR---------------------G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCC---------------------C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 888999876433221111110 0 1245677777888777665 566999888765332
Q ss_pred cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--CCccceeecccccc
Q 001311 601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY 650 (1102)
Q Consensus 601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 650 (1102)
... ...++.|+|||++|+.++.+|.+.+|.+. ++ ...+.+.++..
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g 416 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG 416 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence 221 23568899999999999999999888763 34 45555555443
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.6e-13 Score=134.10 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=183.5
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC---ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV- 879 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~- 879 (1102)
...+|+|.+|++|+..+|++. ...|.||..... +..+++..|...|++++|+| ..+.|++++.|..-+||...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 357899999999999999998 678999988654 46788999999999999999 889999999999999999833
Q ss_pred c--eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 880 D--EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 880 ~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
+ +..-.+..|...+++|.|+|..+.+|+|+....|.||-++.... .-+-+.. ..+....|.++.|+|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhi--kkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHI--KKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhh--CCccccceeeeeccCCcceecc
Confidence 3 34455667899999999999999999999999999998876321 1111111 1112257899999999999999
Q ss_pred E-eCCeEEEEEcC-----C-------------ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee-
Q 001311 958 V-HETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL- 1017 (1102)
Q Consensus 958 ~-~d~~i~iwd~~-----~-------------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~- 1017 (1102)
+ .|+..+||..- + |+++..+. ...+.|..+.|+|+|..|+-.+.|++|.+=|......
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 5 89999888641 1 12222222 3367899999999999999999999999999877753
Q ss_pred EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+..+. ...+|. +++.|.. .+.++.++.|+.=.++...+
T Consensus 242 v~~~~-~~~lP~---------ls~~~is--e~~vv~ag~~c~P~lf~~~~ 279 (361)
T KOG1523|consen 242 VQSVA-TAQLPL---------LSVSWIS--ENSVVAAGYDCGPVLFVTDE 279 (361)
T ss_pred ccchh-hccCCc---------eeeEeec--CCceeecCCCCCceEEEecc
Confidence 32222 222442 2677765 35777777776555555443
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.1e-12 Score=131.51 Aligned_cols=255 Identities=16% Similarity=0.187 Sum_probs=166.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 423 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 423 (1102)
-+-.+..++|++.--. +|++..|..|+|||-....... +-......|+|++|-| .++-|
T Consensus 97 s~~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhcceeeEeechhhhh-hhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCccee
Confidence 3457788999995543 8899999999999976522211 1223345899999999 45567
Q ss_pred EEEECCCeEEEEEccCCceee-----------eEEEeeccccCEEEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCeeeE
Q 001311 424 GVAYSRHIVQIYSYHGGDEVR-----------QHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQY 491 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~~~-----------~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~i~vWd~~~~~~~~ 491 (1102)
++|+..| |.+|......... ++..-.|| .+|+++.|.+||. .+++++ .|..|.|||..+|.++.
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence 7777655 9999865321111 11223455 6899999999999 577776 56789999999998876
Q ss_pred EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc-cCceeEEEE
Q 001311 492 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-KRSLGVVQF 570 (1102)
Q Consensus 492 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-~~~i~~~~~ 570 (1102)
......+.+.-+.|+ +|+++|+.+..|+..++|...............+.|...+|+|+|+.++.... ...+.++.|
T Consensus 233 L~~~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred ccccCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 654455667778885 56689999999999999965443333333333448899999999987654433 334555555
Q ss_pred cCCCCEEE-EEeCCCeEEEEECCCcceEEEEcCC-CCCCCcCeEEEcCCCCEEEEEECCC
Q 001311 571 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDN 628 (1102)
Q Consensus 571 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 628 (1102)
+.....+. .++.....-+-|+..-. ...+. --.+++.+++|.|.|.+|++....+
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 54433222 33333334444443211 11110 0123578899999999999876543
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.9e-12 Score=129.87 Aligned_cols=289 Identities=12% Similarity=0.155 Sum_probs=185.0
Q ss_pred CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccc
Q 001311 703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 782 (1102)
Q Consensus 703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 782 (1102)
..++++..|..|++|+-.. ..+..++. .....|++++|-|.+..-++.+-.+.|.+|..+........
T Consensus 111 ~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~----- 178 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN----- 178 (445)
T ss_pred hhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc-----
Confidence 4567888999999999776 33333332 24578999999998776666667778999987543111000
Q ss_pred ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC
Q 001311 783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 860 (1102)
Q Consensus 783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 860 (1102)
++. ..+ .....+.+.+| .+|++|.|.+||..+++++ |..|.|||..++..+....-..+.++-+.||| |+
T Consensus 179 --~~~--~s~--~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg 250 (445)
T KOG2139|consen 179 --IRM--MST--HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG 250 (445)
T ss_pred --ccc--ccc--cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence 000 000 01111223335 7899999999999999998 68899999999888766655567799999999 89
Q ss_pred cEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccc----------ceee-
Q 001311 861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ----------KNRF- 929 (1102)
Q Consensus 861 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~----------~~~~- 929 (1102)
.+|..++-|+..++|+.....-.....--++.|...+|+|+|++|..+.. |.-++|.+.-.+.. ....
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 99999999999999965433222333334568999999999988764432 22344443321110 0000
Q ss_pred -----eecCCCCCCCCCCCcEEEEccCCcEEEEEeCC---------eEEEEEcCCceEeeeeccCC-CCCCeeEEEEcC-
Q 001311 930 -----LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC- 993 (1102)
Q Consensus 930 -----~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~sp- 993 (1102)
..+..+...-.+.+.+++|.|.|.+||+...+ .|.+||....-.+....++. .......++|+|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 11222222233578999999999999995322 35667766544433322110 122355667766
Q ss_pred --CCcEEEEEeCCCeEEEEEc
Q 001311 994 --DSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 994 --d~~~l~s~s~Dg~I~vwd~ 1012 (1102)
++.+|..+=..|.|.-|++
T Consensus 410 ~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 410 KNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccCCcEEEEEeccCceEeeee
Confidence 6677777767777777664
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=5.7e-13 Score=140.27 Aligned_cols=168 Identities=12% Similarity=0.175 Sum_probs=124.1
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCceeeeec----CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----------
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----------- 879 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----------- 879 (1102)
+.+--+.+|- -|.|.+.|....+..+.+. .....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 4555566665 6888888876533222221 12467999999997777888889999999997531
Q ss_pred ---ce--------------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCC
Q 001311 880 ---DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 942 (1102)
Q Consensus 880 ---~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1102)
+. .+..+.--.+.|...+|+|||++||+.+.||.+||+|..+.+... ..+..- +.
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--~mkSYF------GG 334 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--VMKSYF------GG 334 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH--HHHhhc------cc
Confidence 11 111121223578899999999999999999999999999854322 111111 36
Q ss_pred CcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC
Q 001311 943 DTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 993 (1102)
Q Consensus 943 v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp 993 (1102)
..+++|||||+||++ +.|.-|.||.....+.+.- .++|.++|..++|.|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe--ccccccceeeEeecc
Confidence 799999999999999 4899999999999888764 569999999999987
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.7e-12 Score=136.29 Aligned_cols=195 Identities=11% Similarity=0.201 Sum_probs=155.5
Q ss_pred eEEEEe-cCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec-
Q 001311 810 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK- 887 (1102)
Q Consensus 810 ~~l~~s-~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~- 887 (1102)
..++++ +...++++|+...|+-++++.|.-+..+....+.+.++..++ -..+|++|+.+|.|..||.++...+..+.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 344554 344566667778899999999999999988889999999999 88899999999999999998876665553
Q ss_pred -----cccc-----cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEE
Q 001311 888 -----GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHF 955 (1102)
Q Consensus 888 -----~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l 955 (1102)
.|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+.. +....+. ..+|..+.|.+. +..+
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl----~~kdh~~---e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL----LVKDHGY---ELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce----eecccCC---ccceeeecccccCCCceE
Confidence 2333 4999999999999999999999999999986542 1111111 247888888765 5566
Q ss_pred EEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 956 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 956 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
++.....++|||-.+|+....+.+ ...+..+|+-|++.++++|.+++.+..|-++..
T Consensus 289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 667778899999999998887754 556999999999999999999988888776654
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.5e-11 Score=130.61 Aligned_cols=546 Identities=10% Similarity=0.098 Sum_probs=310.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
.+....|++|+....| +|+|+.||.++|-.+.+...-.. .--+++.+.-...+.+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4567899999999997 99999999999999876432111 001222223334457999999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee-EEeecCCCCeEEE
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 503 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~-~~~~~h~~~v~~v 503 (1102)
+...+|.|.||-+-.|.-.... .-......|.+++|+.||. .+.....||.|.|=.++..+.- +.++|. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999998877644322 1223456799999999999 5777777888876665432221 223321 12235
Q ss_pred eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCe-eeE-EEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~-~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
.|+ +|...++.+-..|.+.++|....-.. ..+... |+. -.++.-+.+ +.++.-..-...-..|+...|+.+-
T Consensus 163 ~ws--~D~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 163 LWS--EDLEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eec--ccHHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence 564 45466777777899999987542111 111111 111 112222211 1111111111223356778899999
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 661 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1102)
..|.+.|..-.+...-..+... ..+..+.|+++|..|++++.+..-.- +..+ ..+..
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~--n~v~F----------------- 293 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDS--NKVHF----------------- 293 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-cccc--ceEEE-----------------
Confidence 9999988765544332233211 25778999999999999987532100 0000 00000
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311 662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 741 (1102)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1102)
+++.| ....++.. ....
T Consensus 294 -ysp~G----------------------------------------------------------~i~gtlkv----pg~~ 310 (1189)
T KOG2041|consen 294 -YSPYG----------------------------------------------------------HIVGTLKV----PGSC 310 (1189)
T ss_pred -eccch----------------------------------------------------------hheEEEec----CCce
Confidence 00111 00011111 2355
Q ss_pred eEEEEEccCCceEEEeecCceEEeeecccc----------ccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311 742 ISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 811 (1102)
Q Consensus 742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 811 (1102)
|++++|-..|-+++.+ -|+.|.+=++... .+-..+.......+.+||..+.+..... -....+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~ 383 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFEN 383 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceee
Confidence 6666666655544332 2334444333211 0001112222334667887776543322 223556
Q ss_pred EEEecCCCeEEEEe-CCeEEEEEc-CCCceeeeecC-------CCCC---eeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 812 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFMP-------PPPA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 812 l~~s~d~~~las~s-dg~I~iwd~-~~~~~~~~~~~-------~~~~---i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
+++..+--.|+.-. ++.|.-++. ++...+..+.- -... |.-.-..- ++.+++.++.+ .+.+|....
T Consensus 384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~ 461 (1189)
T KOG2041|consen 384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVL 461 (1189)
T ss_pred hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEec
Confidence 77776655555555 566555432 22221111110 0111 11111112 56677777765 688887643
Q ss_pred cee--------------------------------eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce
Q 001311 880 DEV--------------------------------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 927 (1102)
Q Consensus 880 ~~~--------------------------------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 927 (1102)
.+. ..++.|..++|.+++.+ .++|..+-..|.|.-+++........
T Consensus 462 pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~ 539 (1189)
T KOG2041|consen 462 PKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS 539 (1189)
T ss_pred cchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence 211 12344556778777775 57888888899999999887432111
Q ss_pred eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcC---CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC
Q 001311 928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
. +....+.++++.-+...+|+- .-|.+.+.|+. +|..+..+. ......|+.+.|..|+..|+.-.+
T Consensus 540 -----y----~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-~~errDVWd~~Wa~dNp~llAlme 609 (1189)
T KOG2041|consen 540 -----Y----PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-TSERRDVWDYEWAQDNPNLLALME 609 (1189)
T ss_pred -----c----ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-hhhhhhhhhhhhccCCchHHhhhh
Confidence 1 112367889999999888884 66778887775 344444322 233678999999998877766665
Q ss_pred CCeEEEEEcC
Q 001311 1004 DATVCVFSAA 1013 (1102)
Q Consensus 1004 Dg~I~vwd~~ 1013 (1102)
--.++|++-.
T Consensus 610 Ktrmyifrgn 619 (1189)
T KOG2041|consen 610 KTRMYIFRGN 619 (1189)
T ss_pred hceEEEecCc
Confidence 5667777643
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.3e-13 Score=142.43 Aligned_cols=282 Identities=12% Similarity=0.158 Sum_probs=212.7
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..-..+.++.+|++++.++..|.+-.+|+.+ +.+... + .-...|..+.|-.+.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----------------------~~L~~E-i---~v~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----------------------KKLHFE-I---NVMETVRDVTFLHNEQ 183 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc----------------------ceeeee-e---ehhhhhhhhhhhcchH
Confidence 3446788999999999999999999888733 222221 1 1356688899999999
Q ss_pred eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEe
Q 001311 820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 899 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 899 (1102)
++|++....++|||- .|..++.++.| ..|..+.|-| .-.+|++++..|.++--|+.+|+.+..+..-.+.+..|+-.
T Consensus 184 ~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhhhceEEEecC-CCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 999999999999995 45667777644 4599999999 88899999999999999999999999998888999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeec
Q 001311 900 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 978 (1102)
Q Consensus 900 ~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~ 978 (1102)
|-+-.+-+|...|+|.+|.....+. +...-.|. ++|.++++.++|+|+|+ |.|..++|||+++...+.++.
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch-----HHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 9999999999999999999887553 33333444 48999999999999999 699999999999888766654
Q ss_pred cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE-cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC
Q 001311 979 PRESSAPITHATFSCDSQLVYACFLDATVCVFS-AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus 979 ~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd-~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
. ..+...++||.-| |++++....|.||. .-.+...+... |+.+. ....|. .+.|.|- .+.|-.|..-
T Consensus 333 t---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~p---Ym~H~-~~~~V~--~l~FcP~-EDvLGIGH~~ 400 (545)
T KOG1272|consen 333 T---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETP---YMNHR-CGGPVE--DLRFCPY-EDVLGIGHAG 400 (545)
T ss_pred c---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcc---hhhhc-cCcccc--cceeccH-HHeeeccccC
Confidence 3 3466778888655 34445566799994 33322222222 22211 112244 8899985 4677777777
Q ss_pred CcEEEEeccCCCc
Q 001311 1058 GGVHVFEPLESEG 1070 (1102)
Q Consensus 1058 g~v~vW~~~~~~~ 1070 (1102)
|--.+-=.-.|++
T Consensus 401 G~tsilVPGsGeP 413 (545)
T KOG1272|consen 401 GITSILVPGSGEP 413 (545)
T ss_pred CceeEeccCCCCC
Confidence 7666666666663
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=4e-13 Score=141.44 Aligned_cols=154 Identities=19% Similarity=0.294 Sum_probs=116.2
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe---------eeeee--eccCCCCccccccccCCCCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKV--WDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
+..|+|+.|-|-++.++..+-.+|.++++|.+-...... ..|.+ |.-.....|.. -..--++.|..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccce
Confidence 479999999998888888888999999998632110000 00111 10000001111 111223589999
Q ss_pred EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~ 494 (1102)
+|||||++||+.+.||.++|||..+.+.+.. ++.--+...|++|||||+ +|++|+.|-.|.||.+..++.+..-+
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 9999999999999999999999998765542 333457899999999999 89999999999999999999999999
Q ss_pred cCCCCeEEEeee
Q 001311 495 GHEAPVYSVCPH 506 (1102)
Q Consensus 495 ~h~~~v~~v~~~ 506 (1102)
||..+|..|+|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999986
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=5.1e-12 Score=134.25 Aligned_cols=256 Identities=14% Similarity=0.137 Sum_probs=174.9
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC--CCeEEEEEc
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG--VSVNRVIWS 417 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s 417 (1102)
++-++|...-+.|..+|||+|++|||..--.|++||+..-..-. .-|. ..|.-.-.|
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiLs 103 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEILS 103 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEec
Confidence 34456888889999999999999999999999999997654322 2222 345555556
Q ss_pred cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
-|-..++.-..|.+|.+-.--+ ... .++- ...-..++++.-.-. |+.++....|+-.+++.|..+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~G-~hy----~~RI-P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKYG-RHY----RTRI-PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhcC-eee----eeec-CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 6666777777777775543221 111 1110 112234555544443 4444445679999999999999998888
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
+.++++..++. ..+|++|+.+|.|.+||.+.......+..... |.+. | .+.....++++.|+.+|-.+
T Consensus 176 ~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---p------g~~~~~svTal~F~d~gL~~ 243 (703)
T KOG2321|consen 176 GELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---P------GGDAAPSVTALKFRDDGLHV 243 (703)
T ss_pred ccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccc-cCCC---c------cccccCcceEEEecCCceeE
Confidence 89998887543 35889999999999999998766555443222 1111 1 11122357777888777889
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC--CCEEEEEECCCcEEEEEccCC
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
++|..+|.|.|||+++.+++..-. |+...+|..+.|.+. +..+++. ....++|||-.+|
T Consensus 244 aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred EeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 999999999999999988876654 555667888999774 4445544 4578999998887
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.4e-10 Score=126.07 Aligned_cols=479 Identities=12% Similarity=0.128 Sum_probs=278.1
Q ss_pred CCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce------------eeeEEEeeccccCEEEEEEcCCCCeeEEEEec
Q 001311 407 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474 (1102)
Q Consensus 407 h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~------------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~ 474 (1102)
......|++|+....|+|+|+.||.++|-.+.+... +....++.||++.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 345789999999999999999999999998765321 112245889999999999998887 689999
Q ss_pred CCCcEEEEeCCCCeeeEEe--ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311 475 DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552 (1102)
Q Consensus 475 ~d~~i~vWd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1102)
.+|.|.||-+-.|.-...+ ......|.+++| ..+|..|+..-.||.|.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavI---------------------------- 140 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVI---------------------------- 140 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEE----------------------------
Confidence 9999999999888655433 224455777777 45556676666666553
Q ss_pred CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
+|+-||. |||.-+-. . . ....+.|++|.+.++.+-.+|.+.+
T Consensus 141 --------------------------VGsvdGN-RIwgKeLk----g---~----~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 141 --------------------------VGSVDGN-RIWGKELK----G---Q----LLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred --------------------------EEeeccc-eecchhcc----h---h----eccceeecccHHHHHhhhcCCcEEE
Confidence 3444442 55643210 0 0 1234778888887777777888888
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCC-CCCccccCCCCccccccCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM-NGDVRSLADVKPRITEESN 711 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d 711 (1102)
+|............. .+. ..+ +.+...++ +....-+ .......|+...++.+...
T Consensus 183 ydnqgnF~~Kl~~~c---~Vn-----------~tg-------~~s~~~~k---ia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDC---EVN-----------GTG-------IFSNFPTK---IAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ecccccHHHhhhhce---EEe-----------eee-------eecCCCcc---ccceeeccCccccCCCCCCEEEEEEcC
Confidence 876544221111100 000 000 00000001 1111112 2233445578888888888
Q ss_pred CccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCC
Q 001311 712 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 791 (1102)
Q Consensus 712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 791 (1102)
|.+.+..-.+...+.... ..-.|..+.|+++|..|+++|.+....- ......+.++.+-
T Consensus 239 Gr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~~-------------~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDADE-------------PTDSNKVHFYSPY 297 (1189)
T ss_pred ceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCcccccC-------------ccccceEEEeccc
Confidence 888877655433332222 2357888999999999999987632100 0000112222222
Q ss_pred CccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc
Q 001311 792 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 871 (1102)
Q Consensus 792 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 871 (1102)
...+-. +.. ....|++++|-..|-.+|.+-|+.|++-+++-.-.-..+. . .+.|-...... ..-.
T Consensus 298 G~i~gt--lkv--pg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e---~---TvVy~y~~~e~-----p~y~ 362 (1189)
T KOG2041|consen 298 GHIVGT--LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIE---E---TVVYVYQKEEL-----PQYG 362 (1189)
T ss_pred hhheEE--Eec--CCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEee---e---EEEEEEccCCC-----cceE
Confidence 111111 111 5678999999999999999999999988876422211111 1 11111101000 1124
Q ss_pred EEEEEeeccee-eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecC--CCCCCCC--CCCcEE
Q 001311 872 IQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTPTA--QSDTRV 946 (1102)
Q Consensus 872 v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~--~~v~~~ 946 (1102)
|.+||..+.+. ++... | ..+++|+.+.-.|+.-..|+.+.-++.-.... ..-.+... -|..... ..|.-.
T Consensus 363 i~Fwdtk~nek~vK~V~-~---~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~-~~~~l~LCNSIGT~lD~kytdirP~ 437 (1189)
T KOG2041|consen 363 IMFWDTKTNEKTVKTVT-H---FENMAFYREHCVLINRQDDGVIPEYSTLENRS-RVYFLQLCNSIGTSLDYKYTDIRPK 437 (1189)
T ss_pred EEEEecccChhhhhhhc-c---eeehheecccEEEEeccccCCCcchhhhhccc-ceEEEeeecccCCcCCCCcceeeee
Confidence 78899887643 23222 2 45688888877888888888777663211111 01111111 1111000 112222
Q ss_pred EEccCCcEEEEEeCCeEEEEEcCCceEee-------------------------eec-----cCCCCCCeeEEEEcCCCc
Q 001311 947 QFHQDQIHFLVVHETQLAIFETTKLECVK-------------------------QWV-----PRESSAPITHATFSCDSQ 996 (1102)
Q Consensus 947 ~~spdg~~l~~~~d~~i~iwd~~~~~~~~-------------------------~~~-----~~~h~~~v~~l~~spd~~ 996 (1102)
-..-+|.++++++...+.+|.....+... ++. ..|..++|-+++.| .+
T Consensus 438 Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk 515 (1189)
T KOG2041|consen 438 FVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DK 515 (1189)
T ss_pred EEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ce
Confidence 33446777777878888888753321110 011 11335677777775 67
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 997 LVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 997 ~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+|..+-..|.|.-|.+.++.+..+..
T Consensus 516 ~l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 516 FLMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred EEEEEeccCceEEEEecceeeeeccc
Confidence 88889999999999999988776544
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=4.9e-12 Score=126.23 Aligned_cols=326 Identities=14% Similarity=0.246 Sum_probs=203.9
Q ss_pred CCCCEEEEEeCCCeEEEEEC-CCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311 572 TTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 650 (1102)
Q Consensus 572 ~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 650 (1102)
|..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++...|++|-.+|++.-+.+..........+
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r---- 108 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK---- 108 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh----
Confidence 33445999999999999954 3444333332 23344688899999999999999999998887654322211111
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311 651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 730 (1102)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 730 (1102)
.|
T Consensus 109 -----------------------------------------------------------------~~------------- 110 (404)
T KOG1409|consen 109 -----------------------------------------------------------------DY------------- 110 (404)
T ss_pred -----------------------------------------------------------------hh-------------
Confidence 00
Q ss_pred ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311 731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810 (1102)
Q Consensus 731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~ 810 (1102)
..|...+..+.|+.....+++.+.|..+. |... +.|..+.... .....+
T Consensus 111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~---------------------e~~~~lg~Y~----~~~~~t 159 (404)
T KOG1409|consen 111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT---------------------ESGNRLGGYN----FETPAS 159 (404)
T ss_pred -----hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------------ccCCcccceE----eeccCC
Confidence 23778888999998888899999886653 3321 1111111000 011111
Q ss_pred EEEEecCCCeEEEEe-CCeEEEEE--cCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeeee
Q 001311 811 CFALSKNDSYVMSAS-GGKISLFN--MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKL 886 (1102)
Q Consensus 811 ~l~~s~d~~~las~s-dg~I~iwd--~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l 886 (1102)
++.+.-. +...|. .|.|..-. ......+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+...+ ....+
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 333443 35544433 345677889999999999999999 88999999999999999997644 34678
Q ss_pred ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeee-------------------------ecCCCCCCCC-
Q 001311 887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------------------QIPTGRTPTA- 940 (1102)
Q Consensus 887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~~~~- 940 (1102)
.+|.+.|..+...+--+.|++++.||.|.+|+++........-+ .....|-...
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg 316 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCG 316 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 89999999999988899999999999999999876433221110 0000000000
Q ss_pred CCCcEEEEccCCcEEEEEeCCeEEEEEcCCce-----EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 941 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 941 ~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
..+-..+-+.-..+...+.+-.+++.|.--.. .......+.-...|+.+.+..+-.+|+|++.|..|+|||+..
T Consensus 317 ~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 317 KAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 11111122222222233444455555432111 111111122255799999999999999999999999999764
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=5.6e-10 Score=123.77 Aligned_cols=209 Identities=16% Similarity=0.196 Sum_probs=131.8
Q ss_pred eeEEEEecCCCeEEEEe--CCeEEEEEcCC-Cceeee---e----------cCCCCCeeEEEEecCCCcEEEEEe-CCCc
Q 001311 809 VPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDSS 871 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s--dg~I~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~d~~~lasg~-~dg~ 871 (1102)
...++++|++++|+++. +|.|.++++.. +..... + +.......++.|+| +++++++.. ....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR 167 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence 44566667777776665 56777777764 222211 1 11234578899999 888777654 3348
Q ss_pred EEEEEeecce--eee--eec-cccccceeEEEecCCCEEEEE-cCCCcEEEEEcC--CCcccceeeeecCCCCCCCCCCC
Q 001311 872 IQIYNVRVDE--VKS--KLK-GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSD 943 (1102)
Q Consensus 872 v~vwd~~~~~--~~~--~l~-~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v 943 (1102)
|++|++.... +.. .+. .....-..++|+||++++... -.+++|.++++. .+.......+.............
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999997654 322 221 123345789999999988655 457889999998 44333333333332222112256
Q ss_pred cEEEEccCCcEEEEE--eCCeEEEEEcC--CceE--eeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEc--CC
Q 001311 944 TRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSA--AN 1014 (1102)
Q Consensus 944 ~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~--~~ 1014 (1102)
..++++|||++|.++ .++.|.+|+++ +++. +..+.. .......++++|||++|++++ .++.|.+|++ ++
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 789999999999996 66799999993 3333 333332 245589999999999999887 4578999976 57
Q ss_pred ceeEEE
Q 001311 1015 LKLRCR 1020 (1102)
Q Consensus 1015 ~~~~~~ 1020 (1102)
|++...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 776543
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.7e-11 Score=139.87 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=140.5
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
...+..+...+.+.+|||||+.|+.+.. .+..|.+||+.+++... +....+.+..++|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~ 250 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAF 250 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEE
Confidence 3344557778999999999998555432 24579999998876543 1222333556899
Q ss_pred ccCCCeEEEE-ECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec-CCCc--EEEEeCCCCeee
Q 001311 417 SPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQ 490 (1102)
Q Consensus 417 spdg~~las~-~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~--i~vWd~~~~~~~ 490 (1102)
||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+. |+..+ .++. |.++|+.+++.
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-
Confidence 9999999865 4444 58899999876433 4445567889999999995 54444 3444 55557666654
Q ss_pred EEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311 491 YIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567 (1102)
Q Consensus 491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 567 (1102)
..+..+........| +++|++|+..+.+ ..|.+||+.++... .+... .... .
T Consensus 324 ~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~---------------------~ 378 (429)
T PRK03629 324 QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDE---------------------T 378 (429)
T ss_pred EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCC---------------------C
Confidence 344334444455666 4666777766543 35788888765422 22111 0111 2
Q ss_pred EEEcCCCCEEEEEeCCCe---EEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311 568 VQFDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 616 (1102)
..|+|||++|+.++.++. +.++++ +|.....+..+.+ .+...+|+|
T Consensus 379 p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 379 PSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred ceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCC--CcCCcccCC
Confidence 446666677888776553 777887 4555566654433 577788887
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=1.1e-07 Score=116.58 Aligned_cols=521 Identities=12% Similarity=0.130 Sum_probs=276.3
Q ss_pred CCeeEEEEecCCCeEEEE-EecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311 347 SSPMSMDFHPVQQTLLLV-GTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llas-g~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 423 (1102)
..+...+|.+....++++ +.... .|.+......... ..+--|+.. ......+.|.++.|-+|...|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~~---------~~~~~~~~ivs~~yl~d~~~l 90 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSV--EVLASWDAP---------LPDDPNDKIVSFQYLADSESL 90 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCce--eEEEecccc---------CCcCCCCcEEEEEeccCCCcE
Confidence 467778888876654443 33322 3444444332211 111111111 012445789999999999999
Q ss_pred EEEECCCeEEEE----EccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee---------
Q 001311 424 GVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 490 (1102)
Q Consensus 424 as~~~d~~v~vw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~--------- 490 (1102)
+.+..+|.|.+. +..+.. +. ....-..+|.+++||||+. +|+....++++.+-+ ++-..+
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt-~~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLMT-RDFDPISEVPLDSDD 163 (928)
T ss_pred EEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEEe-ccceEEEEeecCccc
Confidence 999999999999 544432 22 1333467999999999999 455555566766553 222111
Q ss_pred ---------------EEeecCCCC------------------e----EEEeeeecCCccEEEEEeC---C---CeEEEEE
Q 001311 491 ---------------YIFEGHEAP------------------V----YSVCPHHKENIQFIFSTAL---D---GKIKAWL 527 (1102)
Q Consensus 491 ---------------~~~~~h~~~------------------v----~~v~~~~~~~~~~l~s~s~---d---g~i~~wd 527 (1102)
..|.|-.+. + ..+.++..+||.++++.+. . ..||+|+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 112111110 1 1222334788888888775 2 4688886
Q ss_pred cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEEcCC-
Q 001311 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDAD- 603 (1102)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~- 603 (1102)
-+ +....+.+ .+ .+--..++|.|.|+++++.-. ...|.+|.- +|-.-..|...
T Consensus 244 Re-G~L~stSE----~v-----------------~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 244 RE-GELQSTSE----PV-----------------DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred CC-ceEEeccc----cC-----------------CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 54 11111111 11 112234677777777777643 466778874 44433333322
Q ss_pred -CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001311 604 -GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 682 (1102)
Q Consensus 604 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1102)
.....|..+.|++|+..|++...|. |.+|-..+-.-.++..-..
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~---------------------------------- 345 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF---------------------------------- 345 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc----------------------------------
Confidence 2334689999999999999988664 9999876652222211000
Q ss_pred cccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCC-ceEEEeecCc
Q 001311 683 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNA 761 (1102)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg 761 (1102)
.....+..+.|+|.. ..|...+.+|
T Consensus 346 ------------------------------------------------------~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 346 ------------------------------------------------------SSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred ------------------------------------------------------cCCCCCCceEECCCCCCEEEEEecCC
Confidence 011122235666643 3355666656
Q ss_pred eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEeCCeEEEEEcCCCcee
Q 001311 762 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKISLFNMMTFKTM 840 (1102)
Q Consensus 762 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~sdg~I~iwd~~~~~~~ 840 (1102)
.+..+++ .|+...+.. .+| |.-.+++....++.+-.++.....
T Consensus 372 ~~~~~~~------------------~~~v~~s~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 372 QYEIYDF------------------AWDVSRSPG------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred cEEEEEE------------------EEEEEecCC------------------CCccCceEEEEEeCCeEEEecccccCCC
Confidence 6666654 222211110 011 222344444456777776643321
Q ss_pred -----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee--------eeec----------cccccceeEE
Q 001311 841 -----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--------SKLK----------GHSKRITGLA 897 (1102)
Q Consensus 841 -----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--------~~l~----------~h~~~V~~l~ 897 (1102)
..+. ....|.+++|++ ++..+|+-..||.|.+|........ ..+. .-...+..++
T Consensus 416 PPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (928)
T PF04762_consen 416 PPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA 493 (928)
T ss_pred chHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence 2333 346799999999 6766888999999999986442211 1111 1234567888
Q ss_pred EecCCCEEEEEcCC---CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceE
Q 001311 898 FSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC 973 (1102)
Q Consensus 898 ~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~ 973 (1102)
|..+...++....+ ..+.++++...+.. .......... ..+..+...++...++. ..+|.+..++......
T Consensus 494 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~ 568 (928)
T PF04762_consen 494 WLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS 568 (928)
T ss_pred EeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence 98887777766654 56888887433211 1111111111 23344444455442333 5778777665544322
Q ss_pred ee-eeccCCCCCCeeEEEEcCCCc---EEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC
Q 001311 974 VK-QWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1049 (1102)
Q Consensus 974 ~~-~~~~~~h~~~v~~l~~spd~~---~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~ 1049 (1102)
.. .+. .-... ..++...+.. .++.-+..|.+++ +++.++. . +. +...+ +.
T Consensus 569 ~~~~fp--~~c~~-~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~---------~-----~t--SF~v~---~~ 622 (928)
T PF04762_consen 569 QIVKFP--QPCPW-MEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS---------N-----CT--SFAVT---DS 622 (928)
T ss_pred ccccCC--CCCcE-EEEEEECCccceeEEEEECCCCEEEE----CCEEEec---------C-----Cc--eEEEE---cC
Confidence 11 121 11112 2222222322 3443344455554 3333321 1 33 45444 24
Q ss_pred EEEEEecCCcEEEEecc
Q 001311 1050 EFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1050 ~l~s~~~Dg~v~vW~~~ 1066 (1102)
+|+-......+++.++.
T Consensus 623 ~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 623 FLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEEecCceEEEEECc
Confidence 55555567888999888
No 234
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.43 E-value=3.8e-08 Score=120.55 Aligned_cols=537 Identities=12% Similarity=0.143 Sum_probs=287.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEE----eCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
..+.|.++.|-++... ++.+..+|.|.+. +..+.+... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999986 7778888999999 665554433 23346799999999999
Q ss_pred CeEEEEECCCeEEEEEcc----C---------C--cee--------eeE----------------------EEeeccccC
Q 001311 421 SLFGVAYSRHIVQIYSYH----G---------G--DEV--------RQH----------------------LEIDAHVGG 455 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~----~---------~--~~~--------~~~----------------------~~l~~h~~~ 455 (1102)
+.||..+.++++.+.+-. . | +.+ .++ ..+. +.+.
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999998876421 0 0 000 000 0011 3334
Q ss_pred EEEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC---CCeEEEE
Q 001311 456 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 526 (1102)
Q Consensus 456 V~~v~~s~d~~~~~l~s~~~------d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg~i~~w 526 (1102)
-..|+|-.||. +++..+. -+.+|||+ +.|....+-..-.+--.+++| .|.|++|++.-. ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~W--rPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSW--RPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccC--CCCCCEEEEEEEcCCCcEEEEE
Confidence 56789999999 5665543 25799999 668765554433333345677 456678887754 3456666
Q ss_pred EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE--EEEcCCC
Q 001311 527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG 604 (1102)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 604 (1102)
.-... ....+.. .+.+ ....+..+.|++++..|+....|. |.+|-..+.... +.+....
T Consensus 287 ErNGL-rhgeF~l--------~~~~---------~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNGL-RHGEFTL--------RFDP---------EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCCc-EeeeEec--------CCCC---------CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 43321 1111111 1111 112445556666666777766554 999998776532 2332222
Q ss_pred CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311 605 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 683 (1102)
Q Consensus 605 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1102)
. ..+..+.|+| +...|.+.+.+|.+..++..-. ...+...
T Consensus 348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~--------------------------------- 388 (928)
T PF04762_consen 348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS--------------------------------- 388 (928)
T ss_pred C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEecCCC---------------------------------
Confidence 1 2345599999 5667888888788877654221 0000000
Q ss_pred ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311 684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 763 (1102)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 763 (1102)
.++..-.+..-...++++-.+.....+.......+ .-...|..++|++++..+++...||.+
T Consensus 389 ---------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l---~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 389 ---------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL---ELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred ---------------CccCceEEEEEeCCeEEEecccccCCCchHhceEE---cCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 00001111111113444444444333333322111 134689999999999989999999999
Q ss_pred EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C---CeEEEEEcCCCc-
Q 001311 764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK- 838 (1102)
Q Consensus 764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d---g~I~iwd~~~~~- 838 (1102)
.+|................. ......... .........+..++|..+...++... + ..+.++++....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLLS-----SISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EEEEecCCCcccccCcchhh-----hcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 99986543221100000000 000000000 00001345678889988887777665 3 468888874332
Q ss_pred --eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eeeeccccccceeEEEecCCC---EEEEEcCCC
Q 001311 839 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS 912 (1102)
Q Consensus 839 --~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg 912 (1102)
.......-.+.+..+...+ +...++.-..+|.|...+...... +..|..-... ..+....+.. .++.-+..|
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~~~ 601 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSSNG 601 (928)
T ss_pred ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECCCC
Confidence 2223333344455555555 444567778899998766554321 1223221111 2222233333 455555555
Q ss_pred cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC-ceEeeeeccCCC----CCCe
Q 001311 913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRES----SAPI 986 (1102)
Q Consensus 913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~h----~~~v 986 (1102)
.+++ .. . .+. ..++++.++ +.+|+. .....++..++.. -....... ..+ ...+
T Consensus 602 ~Ly~---n~-~-----~la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~ 660 (928)
T PF04762_consen 602 RLYA---NS-R-----LLA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC 660 (928)
T ss_pred EEEE---CC-E-----EEe---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence 5443 11 1 111 245666663 444444 5666788888871 11111100 000 1122
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311 987 THATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus 987 ~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
.. -.-|..|+++--...=-|..+.-|.+
T Consensus 661 R~---VERGsriVt~vp~~~~vVLQmPRGNL 688 (928)
T PF04762_consen 661 RR---VERGSRIVTAVPSDTSVVLQMPRGNL 688 (928)
T ss_pred cc---CccCCEEEEEeCCCceEEEEcCCCch
Confidence 22 23577777776554545556666655
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.4e-10 Score=132.23 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=135.2
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 445 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~vwd~~~~~~~~~ 445 (1102)
..|.+||........ +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~ 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence 368889887554322 3456678999999999999997643 457999999988643 2
Q ss_pred EEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCe
Q 001311 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 522 (1102)
Q Consensus 446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~ 522 (1102)
+....+.+..++|+|||+. ++++.+.++ .|++||+.+++.... ..+...+....|+ ++|+.|+..+. ++.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wS--PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWF--PDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence 2223334557899999996 333334444 599999988876544 3344456667774 56677766665 345
Q ss_pred EEEE--EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC---CCeEEEEECCCcceE
Q 001311 523 IKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLL 597 (1102)
Q Consensus 523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 597 (1102)
..+| |+.++. ...+...... .....|+|+|++++..+. ...|++||+.+++..
T Consensus 311 ~~Iy~~d~~~g~-~~~lt~~~~~---------------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 311 PQVYKVNINGGA-PQRITWEGSQ---------------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred ceEEEEECCCCC-eEEeecCCCC---------------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 5555 444332 1222211112 223455666666766543 246889999888643
Q ss_pred EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc---EEEEEcc
Q 001311 598 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS 636 (1102)
Q Consensus 598 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~ 636 (1102)
.+.... ......|+|||++|+..+.++. +.++++.
T Consensus 369 -~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 369 -VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred -EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 333221 2346889999999999988765 5666653
No 236
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1e-09 Score=112.04 Aligned_cols=283 Identities=9% Similarity=0.080 Sum_probs=186.9
Q ss_pred CCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC---ceEEeeeccccccCCCCccccccccee
Q 001311 711 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 787 (1102)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~ 787 (1102)
++.|.+|++.+.........+ .......+-++|+|+++.|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 578999999843221111111 2256778899999999998888765 55666654
Q ss_pred ccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCC-Cceeee--ecCCCCC----------eeE
Q 001311 788 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 852 (1102)
Q Consensus 788 w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~-~~~~~~--~~~~~~~----------i~~ 852 (1102)
|..+|.+....... ....+.+.++++++|++++++. .|.|.++-++. |..... ...|.+. +-.
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33444422111100 1233448899999999999998 68999999965 433221 2224333 788
Q ss_pred EEEecCCCcEEEEEeCC-CcEEEEEeecceeeeeec---cccccceeEEEecCCCEEEEEc-CCCcEEEEEcCC--Cccc
Q 001311 853 LAFHPQDNNIIAIGMDD-SSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQ 925 (1102)
Q Consensus 853 l~~sp~d~~~lasg~~d-g~v~vwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~--~~~~ 925 (1102)
..|.| ++++|++.+-. -.|.+|++..|++...-. .....-..|+|+|++++..... -+++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888877532 379999999776543211 1233457899999999987666 489999999987 4443
Q ss_pred ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCC--ceEeeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311 926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
..+.+...............+.+++||++|.++ ....|.+|.+.. ++....-....+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 344444444334444567889999999999997 445788887754 3322221122345568899999999999999
Q ss_pred eCCC-eEEEEEc--CCceeEE
Q 001311 1002 FLDA-TVCVFSA--ANLKLRC 1019 (1102)
Q Consensus 1002 s~Dg-~I~vwd~--~~~~~~~ 1019 (1102)
+.|+ .|.||.. .+|++..
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEe
Confidence 8764 5888866 4565543
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.1e-11 Score=124.15 Aligned_cols=95 Identities=14% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 882 (1102)
...+++++...|++++|++|. -+.+..||++.+..... +.+..+.|+++..+| ...+||+++-|..|||+|+.+.++
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchh
Confidence 356788889999999999998 79999999999988776 889999999999999 889999999999999999999766
Q ss_pred eeeeccccccceeEEEecC
Q 001311 883 KSKLKGHSKRITGLAFSHA 901 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d 901 (1102)
+.... -...+++|-+.++
T Consensus 325 l~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 325 LHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred hhhhh-hhccccEEEecCC
Confidence 65543 2334666666544
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5e-10 Score=119.75 Aligned_cols=254 Identities=15% Similarity=0.234 Sum_probs=166.5
Q ss_pred cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCC--Cc
Q 001311 784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NN 861 (1102)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d--~~ 861 (1102)
.+++|+.+++......... .... ++..|+.|..+.|--..+.+.+|+..+.+.+.. .-|...|+.+++|| + ..
T Consensus 106 n~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~ 180 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPP 180 (566)
T ss_pred ceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCc
Confidence 3456666774433221111 1221 588999998776666678999999987443322 23577899999999 5 23
Q ss_pred EEEE-----EeCCCcEEEEEeecceeeeee--cc-ccccceeEEEecCCCE-E--EEEcCCC---------cEEEEEcCC
Q 001311 862 IIAI-----GMDDSSIQIYNVRVDEVKSKL--KG-HSKRITGLAFSHALNV-L--VSSGADS---------QLCVWSSDG 921 (1102)
Q Consensus 862 ~las-----g~~dg~v~vwd~~~~~~~~~l--~~-h~~~V~~l~~s~d~~~-l--~s~s~Dg---------~i~vwd~~~ 921 (1102)
.+|+ ++.-+.|+||...-...-..+ +. ....=..+.|.+-|.- | ++..-|. ++.+.++++
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 4443 345568999987632211111 00 1111224677766653 2 3333343 578888773
Q ss_pred CcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--E-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEE
Q 001311 922 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 998 (1102)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l 998 (1102)
+. ....... .++|.++.|+|+|+.+++ | .-..+.|||++ +..+..+. .++=+++-|+|.|++|
T Consensus 261 -~s---~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 261 -ES---VSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNII 326 (566)
T ss_pred -ce---EEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEE
Confidence 21 1222221 258999999999998887 4 56789999986 44555543 6678899999999999
Q ss_pred EEEeCC---CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec------CCcEEEEeccCCC
Q 001311 999 YACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1069 (1102)
Q Consensus 999 ~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1069 (1102)
+.++-+ |.|-|||+.+.+++.++. . ...+.+.|+| ||.+++|+.. |+.++||++....
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~----a--------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFK----A--------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccccc----c--------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 988754 889999999999998776 1 1233699999 6888887765 6899999985543
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=2.5e-12 Score=133.21 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=191.9
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeee------------------------eeeccCCCCccccc
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF------------------------KVWDLGACSMPLQA 401 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 401 (1102)
.-....+.++.+|++ ++.|+.-|.|-.+|+.+++......+ -+||-..-.+.
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElH--- 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELH--- 204 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEe---
Confidence 345578899999998 66777779999999999887765332 13332211111
Q ss_pred cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
-++. ...|..+.|-|.--+|++++..|.++--|+.+|+.+.. +..-.+.+..++-+|-+. ++-+|...|+|.+
T Consensus 205 -Clk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~---~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSl 277 (545)
T KOG1272|consen 205 -CLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS---IRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSL 277 (545)
T ss_pred -ehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHH---HHccCCccchhhcCCccc--eEEEcCCCceEEe
Confidence 1222 24688889999999999999999999999999998764 445677888999999888 8889999999999
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
|...+.+++..+..|.++|.++++ +++|.+++|.+.|..++|||++....+.++.. ......+++|..|
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv--~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-------- 346 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAV--DRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-------- 346 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEE--CCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--------
Confidence 999999999888899999999997 67779999999999999999998776665544 3344555555544
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEE-CCC--cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWD-MDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+++.+....|.||. .-. +.....+..|.....|..+.|.|-...|-+|...|.-.+.-...|
T Consensus 347 ---------------lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 347 ---------------LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred ---------------ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 56666667899994 222 222333333444457899999998888888887776666655455
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.3e-11 Score=138.36 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=139.7
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEec--CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~--d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
.+...+..|...+.+.+|||||++|+.+... +..|.+||+.+++... +..+.+...+.
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~ 253 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAP 253 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCc
Confidence 3444555678889999999999985544322 3469999998876543 23334455688
Q ss_pred EEccCCCeEEE-EECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec-CCCc--EEEEeCCCCe
Q 001311 415 IWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGA 488 (1102)
Q Consensus 415 ~~spdg~~las-~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~--i~vWd~~~~~ 488 (1102)
+|||||+.|+. .+.++ .|++||+.+++... +..+.......+|+|||+. |+..+ .++. |.++|+.+++
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence 99999998864 45555 59999999886432 5556556678999999995 44433 4444 7777777766
Q ss_pred eeEEeecCCCCeEEEeeeecCCccEEEEEeCCC---eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
... +..+.......+| +++|++|+..+.++ .|.+||+.++... .+. +.......
T Consensus 328 ~~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p------------------ 384 (433)
T PRK04922 328 AER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESP------------------ 384 (433)
T ss_pred eEE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCc------------------
Confidence 433 3223333445666 45667777665433 6899998765432 222 11112223
Q ss_pred eEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311 566 GVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 616 (1102)
.|+|+|++++..+. .+.|.++++.. .....+.... ..+...+|+|
T Consensus 385 ---~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 385 ---SFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred ---eECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 45555556665543 34688888854 4445444332 2456677776
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=5.5e-10 Score=110.95 Aligned_cols=238 Identities=14% Similarity=0.213 Sum_probs=156.1
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE-E
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A 426 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~ 426 (1102)
....++|+.|..- +++|.. .-.+||+.+.-+....+.+ ..+ .-.+.-+-| -.++||- |
T Consensus 7 ~~lsvs~NQD~Sc-Fava~~-~Gfriyn~~P~ke~~~r~~----------------~~~-G~~~veMLf--R~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHSC-FAVATD-TGFRIYNCDPFKESASRQF----------------IDG-GFKIVEMLF--RSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCce-EEEEec-CceEEEecCchhhhhhhcc----------------ccC-chhhhhHhh--hhceEEEec
Confidence 3455999999984 776665 5578898876433221111 000 011222222 2445554 3
Q ss_pred ECC------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCeeeEEeecCC--
Q 001311 427 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE-- 497 (1102)
Q Consensus 427 ~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~~~~~~~~h~-- 497 (1102)
|.+ ..|.|||-...+++. ++. -..+|.+|.+.++- |+..- ++.|.||... +.+.++.+.-..
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 332 479999955555443 232 46789999998763 33332 5689999988 566666665322
Q ss_pred CCeEEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 498 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
....+++ +..+..+|+.-| .-|.|++-|+..... ...+..|...| .|++++-+|
T Consensus 137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~I---------------------acv~Ln~~G 193 (346)
T KOG2111|consen 137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDI---------------------ACVALNLQG 193 (346)
T ss_pred CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCce---------------------eEEEEcCCc
Confidence 2244443 344434555443 468999999876544 34455555544 455555555
Q ss_pred CEEEEEeCCCe-EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 575 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 575 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
..+++++..|+ |||||..+|+.+..+........|.+++|||+..+|+++++.|+++|+.+...
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 68999998887 79999999999999876555668999999999999999999999999998764
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.41 E-value=5.1e-09 Score=109.16 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=134.5
Q ss_pred CCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeeeecccccccee
Q 001311 817 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 895 (1102)
Q Consensus 817 d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1102)
+|.+++..+.|+..|.+...+-.++ -+|.+.|.-..+.. ++.-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence 7889999999998888876655443 24677788888888 777899999999 999999988764 555666788999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC----CeEEEEEcCC
Q 001311 896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 970 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d----~~i~iwd~~~ 970 (1102)
+..++||++++.+.....|.+.|++++... .+.... .+-|+.++|+|+++++|.+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999999999999998899999999997642 222111 1478999999999999986 33 4799999999
Q ss_pred ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe
Q 001311 971 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 1002 (1102)
++....-.. .+.=.+-+|.||+++|.--+
T Consensus 479 ~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTP---TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCC---cccccCcccCCCCcEEEEEe
Confidence 988766543 33345678999999887554
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.3e-11 Score=135.44 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=133.7
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---CcEEEEEeecceeeeeeccccccceeEEEecCCC
Q 001311 827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 903 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 903 (1102)
..|.++|.. +...+.+..+...+.+.+|+| |++.|+..+.+ ..|++||+.+++.. .+....+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 467888874 444555556777899999999 88888877643 36999999888653 3333445567899999999
Q ss_pred EEE-EEcCCCcEEEEEc--CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEE--EcCCceEeee
Q 001311 904 VLV-SSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIF--ETTKLECVKQ 976 (1102)
Q Consensus 904 ~l~-s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d~~i~iw--d~~~~~~~~~ 976 (1102)
.|+ +.+.++...||.+ .++.. .... .+. .......|+|||++|+... ++...|| +..++.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt-~~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-----RRLT-QSS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-----EECC-CCC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 887 5677887777655 33321 1111 111 2346788999999988743 3444555 5555544332
Q ss_pred eccCCCCCCeeEEEEcCCCcEEEEEeCCC---eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 977 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
.. . .......+|||||++|+..+.++ .|++||+.+++... +. .+. . .. ...|+| |++.|+.
T Consensus 324 t~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt------~~~--~-~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 324 TF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT------DTT--R-DE--SPSFAP-NGRYILY 387 (427)
T ss_pred ec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc------CCC--C-cc--CceECC-CCCEEEE
Confidence 21 1 23345678999999998877654 69999999887543 22 110 1 22 578999 5777776
Q ss_pred EecCC
Q 001311 1054 GLSDG 1058 (1102)
Q Consensus 1054 ~~~Dg 1058 (1102)
.+.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 66554
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=4.8e-11 Score=119.14 Aligned_cols=365 Identities=15% Similarity=0.179 Sum_probs=213.5
Q ss_pred ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-----eeEEeecCC------------CCeEEEeeeecCCccEEE
Q 001311 453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF 515 (1102)
Q Consensus 453 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~~~~l~ 515 (1102)
.+-|.+|.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45789999999999 89999999999999743222 223444454 347778888888888899
Q ss_pred EEeCCCeEEEEEcCCCCCeee-e----cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001311 516 STALDGKIKAWLYDNLGSRVD-Y----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 590 (1102)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~-~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 590 (1102)
..+.|++|++|-+........ + ......+.++.. .+.+..|-.+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~---------------------------p~~~~~~~~ve--- 152 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL---------------------------PVEGRHDLEVE--- 152 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeec---------------------------eeeccccceee---
Confidence 999999999998876443320 0 000111111110 11111111111
Q ss_pred CCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhh
Q 001311 591 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 670 (1102)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1102)
..+.+.+ .+.|.-.|++++++.|+..++++. |=.|.+|++.-..+.+
T Consensus 153 ---a~prRv~-aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sF---------------------------- 199 (433)
T KOG1354|consen 153 ---ASPRRVY-ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSF---------------------------- 199 (433)
T ss_pred ---eeeeeec-cccceeEeeeeeecCccceEeecc-ceeeeeccccccCCce----------------------------
Confidence 0111222 244555799999999999988774 6789999875332211
Q ss_pred HhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccC
Q 001311 671 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 750 (1102)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 750 (1102)
.+.|+.. ..... -..-|++..|+|.
T Consensus 200 --------------------------------------------nIVDIKP----~nmEe-------LteVITsaEFhp~ 224 (433)
T KOG1354|consen 200 --------------------------------------------NIVDIKP----ANMEE-------LTEVITSAEFHPH 224 (433)
T ss_pred --------------------------------------------eEEEccc----cCHHH-------HHHHHhhhccCHh
Confidence 1222221 11111 2345677788886
Q ss_pred C-ceEEEeecCceEEeeeccccccCCCCcccccccceeccC-CCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCe
Q 001311 751 G-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP-PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 828 (1102)
Q Consensus 751 g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~ 828 (1102)
. +.++-.++.|+|++.|+.....-.. ..+++.. ..+.- ...+.+ --..|..+.|+++|+|+++-+--+
T Consensus 225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~-------hsKlfEepedp~~-rsffse--iIsSISDvKFs~sGryilsRDylt 294 (433)
T KOG1354|consen 225 HCNVFVYSSSKGTIRLCDMRQSALCDA-------HSKLFEEPEDPSS-RSFFSE--IISSISDVKFSHSGRYILSRDYLT 294 (433)
T ss_pred HccEEEEecCCCcEEEeechhhhhhcc-------hhhhhccccCCcc-hhhHHH--HhhhhhceEEccCCcEEEEeccce
Confidence 4 4456666779999999864322100 0111111 11100 000100 234588899999999999888789
Q ss_pred EEEEEc-CCCceeeeecCCC------------CC---eeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eeeeccccc
Q 001311 829 ISLFNM-MTFKTMATFMPPP------------PA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSK 891 (1102)
Q Consensus 829 I~iwd~-~~~~~~~~~~~~~------------~~---i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~ 891 (1102)
|++||+ ...+.+.+++-|. .. -..++|+. ++.++++|+....+++|++..|.. -.++.+...
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~ 373 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRK 373 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeeccccccc
Confidence 999999 4556666666553 12 24578998 888999999999999999765532 122222222
Q ss_pred c--ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311 892 R--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 967 (1102)
Q Consensus 892 ~--V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd 967 (1102)
. ...+ ..-+.+.+++......+|-.. +... ..+...+|+|....+|++..+.++||.
T Consensus 374 ~~~~~~~---~k~~~V~~~g~r~~~~~~vd~---------ldf~-------kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 374 NMKPRKV---LKLRLVSSSGKRKRDEISVDA---------LDFR-------KKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred CCccccc---ccceeeecCCCccccccccch---------hhhh-------hHHHhhccCCccceeeeeecCceEEec
Confidence 1 1111 112334444444332222110 0000 246788999999999998777777763
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=4.4e-10 Score=118.51 Aligned_cols=362 Identities=14% Similarity=0.190 Sum_probs=224.7
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC------
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK------ 477 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~------ 477 (1102)
+.....++..++|||.|.+|++....+ |.+|+-..+..+.. +. ...|..+.|+|.++ +|+|-+...
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~---~~--~~~V~~~~fSP~~k--YL~tw~~~pi~~pe~ 99 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVR---FR--HPDVKYLDFSPNEK--YLVTWSREPIIEPEI 99 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheee---ee--cCCceecccCcccc--eeeeeccCCccChhh
Confidence 444567899999999999999887666 89998877664332 32 35799999999999 788865433
Q ss_pred ---------cEEEEeCCCCeeeEEeecCCCC--eE-EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC-CCCee
Q 001311 478 ---------TIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWC 544 (1102)
Q Consensus 478 ---------~i~vWd~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v 544 (1102)
.+.|||+.+|..+..+.+...+ .+ -+.|+.+. .+++-- ....+.++++...-....+.. ....+
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 4999999999999999876655 44 35565433 344333 336788888622111111111 12456
Q ss_pred eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311 545 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 545 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
....++|.+.. .. .+.|.|. ..+.++++++|.+..++.+.+-....- .-..+.|.+.|.+|++-
T Consensus 177 ~dFsisP~~n~--------~~-la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNH--------DE-LAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEEecCCCCC--------ce-EEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence 66677776531 00 1112221 146788999999987766554432211 12357788888877754
Q ss_pred ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCc
Q 001311 625 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 704 (1102)
Q Consensus 625 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1102)
... +..+++...
T Consensus 241 ~~t------~~ksnKsyf-------------------------------------------------------------- 252 (561)
T COG5354 241 VMT------HTKSNKSYF-------------------------------------------------------------- 252 (561)
T ss_pred EEE------eeeccccee--------------------------------------------------------------
Confidence 321 111110000
Q ss_pred cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEee--cCceEEeeeccccccCCCCccccc
Q 001311 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS 782 (1102)
Q Consensus 705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~ 782 (1102)
.+..+.++++.....+.. ..-.+.|..++|.|.++.+++++ ....+.++++..
T Consensus 253 -----gesnLyl~~~~e~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------ 307 (561)
T COG5354 253 -----GESNLYLLRITERSIPVE--------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------ 307 (561)
T ss_pred -----ccceEEEEeeccccccee--------ccccccceeeeecccCCceeEEecccccceeeccccc------------
Confidence 001223333331111100 01357899999999999887766 456777776522
Q ss_pred ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C---CeEEEEEcCCCceee-eecCCCCCeeEEEEec
Q 001311 783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP 857 (1102)
Q Consensus 783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d---g~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp 857 (1102)
.+.... ....=..+.|+|.+++++.++ | |.|.+||....-.+. .+.+. ..+-+.|+|
T Consensus 308 -----------Nl~~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp 369 (561)
T COG5354 308 -----------NLRFYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP 369 (561)
T ss_pred -----------ceEEec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence 111111 233345678999999999977 5 789999987655443 55533 356678999
Q ss_pred CCCcEEEEEe------CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC
Q 001311 858 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 912 (1102)
Q Consensus 858 ~d~~~lasg~------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 912 (1102)
|+.++.+.. .|..|.|||+...+.. ..+.+.|.|.+++.-+.+.+.
T Consensus 370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 888887764 4678999998754322 567788888888777766654
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-10 Score=133.45 Aligned_cols=216 Identities=12% Similarity=0.061 Sum_probs=141.4
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 445 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~vwd~~~~~~~~~ 445 (1102)
..|.+||....... .+..|...|.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~- 240 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL- 240 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-
Confidence 47888998654332 25677889999999999999998764 4689999999886432
Q ss_pred EEEeeccccCEEEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CC-
Q 001311 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 521 (1102)
Q Consensus 446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg- 521 (1102)
+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.+++. ..+..+........|+ +||+.|+..+. +|
T Consensus 241 ---l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 241 ---VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred ---eecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 4556677889999999996 4456665555 77889887765 4455566656666764 56677776653 33
Q ss_pred -eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001311 522 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 597 (1102)
Q Consensus 522 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 597 (1102)
.|.+||+..+.. ..+......+ ....|+|+|+.|+....+ ..|.+||+.++. .
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~---------------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~ 370 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRY---------------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E 370 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcc---------------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence 577777654322 2221112222 234455666666665432 468889986554 3
Q ss_pred EEEcCCCCCCCcCeEEEcCCCCEEEEEECC------CcEEEEEccCC
Q 001311 598 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 638 (1102)
Q Consensus 598 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~ 638 (1102)
..+... . .+....|+|||+.|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333322 1 36678999999998876553 24667776544
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=1.5e-09 Score=116.28 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=129.7
Q ss_pred eEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceee--
Q 001311 810 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK-- 883 (1102)
Q Consensus 810 ~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~-- 883 (1102)
..++++|||+++.+.. +..|.+.|+.+++.+.++.-.. ...-...+. +..+ + -+.||......+.+ ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~-~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-M-HCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-E-EeecCceEEEEecCCCceEEe
Confidence 3567788888887765 5789999999999888876422 122222222 2222 1 22344444433322 2211
Q ss_pred --eeecccccccee-EEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC----CCCCCCCcEEEEccCCcEE
Q 001311 884 --SKLKGHSKRITG-LAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 884 --~~l~~h~~~V~~-l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~spdg~~l 955 (1102)
..+.+-...+.. -.|++ ||+++..... |+|.+.|+.+.+............. .-.+....-++++++|+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 111110011100 14455 8888877666 9999999766543333333322111 0112344559999999999
Q ss_pred EEEe---C--------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311 956 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 956 ~~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.+.. . +.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.|+|..+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8842 1 5899999999999998875 45899999999999 877666 57889999999999999883
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.7e-11 Score=136.44 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=136.0
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecC--CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
.....+..+...+.+.+|||||+.|+.+...+ ..|.+||+.+++... +....+.+.+.
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~ 245 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAP 245 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence 33444556888999999999999855544333 369999999886543 22233456789
Q ss_pred EEccCCCeEEE-EECCCeEEEEEc--cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC--CCCee
Q 001311 415 IWSPDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAK 489 (1102)
Q Consensus 415 ~~spdg~~las-~~~d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~--~~~~~ 489 (1102)
+|||||+.|+. .+.++...||.+ .++. .+ .+..|...+....|+|||+. +++++..++...||.+ .+++.
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce
Confidence 99999998875 577887666654 4443 22 25556666778899999995 2334444566666654 44443
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCC---eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
. .+..+........| +++|++|+..+.++ .|.+||+.+++... +.. ......
T Consensus 321 ~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~-------------------- 375 (427)
T PRK02889 321 Q-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDES-------------------- 375 (427)
T ss_pred E-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccC--------------------
Confidence 2 22222222334555 56778888776654 69999987754322 211 111223
Q ss_pred EEEEcCCCCEEEEEeCCC---eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311 567 VVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 616 (1102)
..|+|+++.|+..+.++ .+.+.++ ++.....+....+ .+...+|+|
T Consensus 376 -p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 376 -PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred -ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 34555555666655332 3556666 4555555543322 466677776
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.7e-10 Score=118.76 Aligned_cols=112 Identities=20% Similarity=0.305 Sum_probs=91.6
Q ss_pred CCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---CcEEEEEee
Q 001311 805 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVR 878 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~ 878 (1102)
..++|.++.|+++++-+++.. -..+.|||++ +..+..+ ..++-+++-|+| .|++|+.++-+ |.+-|||+.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence 478999999999999887765 3789999986 4555555 356778999999 89999888755 799999999
Q ss_pred cceeeeeeccccccceeEEEecCCCEEEEEcC------CCcEEEEEcCCC
Q 001311 879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW 922 (1102)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~ 922 (1102)
+.+++..+..-.. +-..|+|||++++|++. |+.++||++.+.
T Consensus 345 n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 345 NRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred chhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9999888876544 44789999999998875 677999999773
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1e-09 Score=121.67 Aligned_cols=252 Identities=15% Similarity=0.218 Sum_probs=164.1
Q ss_pred CCCeeEEEEecCCCeEEEEe-C----CeEEEEEcCCC--ce--eeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEE
Q 001311 806 EEAVPCFALSKNDSYVMSAS-G----GKISLFNMMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 875 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-d----g~I~iwd~~~~--~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 875 (1102)
......++++|++++|.+.. . +.|..|++... ++ +............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 34567789999999999886 2 57888888753 32 333332345567899999 788777775 58999999
Q ss_pred Eeec-ceeeee---ec--c--------ccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCc--ccceeeeecCCCCCC
Q 001311 876 NVRV-DEVKSK---LK--G--------HSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 938 (1102)
Q Consensus 876 d~~~-~~~~~~---l~--~--------h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~ 938 (1102)
++.. +.+... +. + -....-++.|+||+++|++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 443322 11 1 1233568999999998887642 3469999998755 322233344444
Q ss_pred CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--CceE--eeeeccC--CC--CCCeeEEEEcCCCcEEEEEe-CCCeE
Q 001311 939 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPR--ES--SAPITHATFSCDSQLVYACF-LDATV 1007 (1102)
Q Consensus 939 ~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~--~h--~~~v~~l~~spd~~~l~s~s-~Dg~I 1007 (1102)
...+.++|+|||+++.+. .++.|.+|++. ++.. +..+... +. ......|+++|||++|+++. .+.+|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 356999999999999885 57889999988 4432 2222211 11 23688999999999987766 56789
Q ss_pred EEEEcC--CceeE--EEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe-cCCcEEEEeccCCCccccc
Q 001311 1008 CVFSAA--NLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1008 ~vwd~~--~~~~~--~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~-~Dg~v~vW~~~~~~~~~~~ 1074 (1102)
.+|+++ +|++. ..+. ..| ..|..+.++| ++++|+++. .++.|.+|++....+.+..
T Consensus 270 ~vf~~d~~~g~l~~~~~~~-----~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVP-----TGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEEECTTTTTEEEEEEEE-----ESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEEEEecCCCceEEEEEEe-----CCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 999993 34433 2222 112 4577899999 577776665 6679999998755544443
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=4.9e-11 Score=119.02 Aligned_cols=155 Identities=12% Similarity=0.225 Sum_probs=108.9
Q ss_pred eEEEEecCCCcEEEEEeC----------CCcEEEEEeec-ceeeeeecc-ccccceeEEEecCCCEEEEE--cCCCcEEE
Q 001311 851 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 916 (1102)
Q Consensus 851 ~~l~~sp~d~~~lasg~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~v 916 (1102)
..+.|++ .|.+|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.+|+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 6665554332 13455555532 223333332 34579999999999987654 45679999
Q ss_pred EEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEc
Q 001311 917 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 992 (1102)
Q Consensus 917 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 992 (1102)
||++. +. ...... ..+..+.|+|+|++|+++. .|.|.+||..+.+.+.... ...++.++||
T Consensus 88 yd~~~-~~----i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKG-KK----IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCcc-cE----eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 99973 21 222221 2567899999999999952 4679999999999887754 3457999999
Q ss_pred CCCcEEEEEeC------CCeEEEEEcCCceeEEEeC
Q 001311 993 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 993 pd~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
|||++|++++. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999985 66766554
No 252
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.7e-10 Score=132.49 Aligned_cols=215 Identities=13% Similarity=0.142 Sum_probs=138.1
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeee
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ 445 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~ 445 (1102)
..|.|||....... .+..|...+.+.+|||||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46899998644332 245667789999999999999988743 469999999886432
Q ss_pred EEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCe
Q 001311 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 522 (1102)
Q Consensus 446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~ 522 (1102)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+| +++|+.|+..+. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 3344455668899999996 334555555 599999988875 445555555556676 456677776654 454
Q ss_pred --EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001311 523 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 597 (1102)
Q Consensus 523 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 597 (1102)
|.++++.+++. ..+...... ....+|+|+|++++..+.+ ..|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~---------------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNY---------------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCC---------------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 55555544322 111111111 1234566666667665433 36999999887754
Q ss_pred EEEcCCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccC
Q 001311 598 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 637 (1102)
Q Consensus 598 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 637 (1102)
.+. ++. ......|+|||++|+..+.+ +.|.+++...
T Consensus 374 -~Lt-~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLT-PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECC-CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 333 221 24567999999988877653 3466676643
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.6e-10 Score=132.83 Aligned_cols=232 Identities=11% Similarity=0.050 Sum_probs=144.5
Q ss_pred CCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCC
Q 001311 329 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 406 (1102)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1102)
+|..|........+..|...+.+.+|||||++|+.+.. .+..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 33334333444555678889999999999998555443 24689999999886543 345
Q ss_pred CCCCeEEEEEccCCCeEEE-EECCCe--EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec-CC--CcEE
Q 001311 407 PGVSVNRVIWSPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DD--KTIK 480 (1102)
Q Consensus 407 h~~~V~~l~~spdg~~las-~~~d~~--v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d--~~i~ 480 (1102)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++..+ +..+........|+|||+. |+..+ .+ ..|+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667888999999998864 455554 7778888876433 5556667788999999995 44333 33 3688
Q ss_pred EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
+||+.+++.. .+..+.+.+....| +++|+.|+..+.+ ..|.+||+..... ..+.. ...+..
T Consensus 318 ~~d~~g~~~~-~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~----------- 381 (435)
T PRK05137 318 VMNADGSNPR-RISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEG----------- 381 (435)
T ss_pred EEECCCCCeE-EeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCC-----------
Confidence 8897766543 34334455555666 4566777766543 3577788754322 22211 112333
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCC------CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDD------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 616 (1102)
..|+|+|+.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 382 ----------p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 382 ----------PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred ----------CeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 3455555556554332 3688888866544 4444222 355667766
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2e-10 Score=117.09 Aligned_cols=256 Identities=12% Similarity=0.089 Sum_probs=176.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEe-cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~-~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
.....|+.++|.-|++.=+..+. .|..+............. .|++. ........|..++.. ...
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCE
Confidence 35578888888887765455554 555566555554443332 12221 233445566666553 456
Q ss_pred EEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCC--CcEEEEeCCCCeeeEEeec----
Q 001311 423 FGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG---- 495 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d--~~i~vWd~~~~~~~~~~~~---- 495 (1102)
|++|-.+|.+.+|..+.+..- .....+..+ .++..|.-++.... ++++||.. ..++|||+...+.+.+-+.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 778889999999999854311 011123323 56778888877775 67779988 8899999998866654321
Q ss_pred ---CCC--CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311 496 ---HEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 570 (1102)
Q Consensus 496 ---h~~--~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 570 (1102)
-.- +++++.|.+......|++++.-+.||+||.+..+.. |.++.|. ...+.++..
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---------V~~fd~~-----------E~~is~~~l 255 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---------VAQFDFL-----------ENPISSTGL 255 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc---------eeEeccc-----------cCcceeeee
Confidence 122 345566655434678999999999999999864332 2222222 225666666
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEE-EcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.|+++++++|...|.+..||++.++.... +.+. .+.++++..+|.+++|++++-|..|||+|+.+.
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77778899999999999999999988766 5544 457999999999999999999999999999885
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=8.8e-09 Score=105.25 Aligned_cols=258 Identities=12% Similarity=0.191 Sum_probs=174.4
Q ss_pred CCCCeeEEEEecCCCeEEEEe----CCeEEEEEcCC--Cceee--eecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEE
Q 001311 805 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 875 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s----dg~I~iwd~~~--~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 875 (1102)
....++-++++|+++.|.++. +|.|.-|.+.. |+... .......+.+.+++++ ++++|+++. ..|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 567788999999999988875 36677777764 44322 2222233448899999 888888876 45799999
Q ss_pred Eeec-ceeeee--ecccccc----------ceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCC
Q 001311 876 NVRV-DEVKSK--LKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 940 (1102)
Q Consensus 876 d~~~-~~~~~~--l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 940 (1102)
-+.. |.+... +..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 432221 2234444 77889999999999875 454 9999999877655544444444
Q ss_pred CCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc-eEeeeec------cC-CCCCCeeEEEEcCCCcEEEEEeC-CCeEEE
Q 001311 941 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL-ECVKQWV------PR-ESSAPITHATFSCDSQLVYACFL-DATVCV 1009 (1102)
Q Consensus 941 ~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~-~~~~~~~------~~-~h~~~v~~l~~spd~~~l~s~s~-Dg~I~v 1009 (1102)
...+.+.|+|++++..+. -+++|.+|..+.. ..+..+. .. ........|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 356999999999998884 6799999988773 2222111 10 11557788999999999987753 346888
Q ss_pred EEcCC--ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-CcEEEEeccCCCcccccCCCC
Q 001311 1010 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPPPV 1078 (1102)
Q Consensus 1010 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-g~v~vW~~~~~~~~~~~~~~~ 1078 (1102)
|.++. +++.. +. ... .+...|....|.+. +++|++++.| ..|.++.++...+.+.....+
T Consensus 271 f~V~~~~g~L~~-~~--~~~-----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 271 FSVDPDGGKLEL-VG--ITP-----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EEEcCCCCEEEE-EE--Eec-----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEecccc
Confidence 87753 33322 11 011 22255668999994 6777666665 589999998877666665443
No 256
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=2.2e-10 Score=114.34 Aligned_cols=151 Identities=20% Similarity=0.417 Sum_probs=105.5
Q ss_pred eEEEEecCCCeEEEEEecC---------CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 350 MSMDFHPVQQTLLLVGTNV---------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
..+.|+|+|++|++....+ +...||.++.. ..+... +.....++|.+++|+|+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~----------------~~~~~~-i~l~~~~~I~~~~WsP~g 71 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK----------------NIPVES-IELKKEGPIHDVAWSPNG 71 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC----------------CCccce-eeccCCCceEEEEECcCC
Confidence 4688999999987766521 12344443221 111111 122345579999999999
Q ss_pred CeEEEE--ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCeeeEEeec
Q 001311 421 SLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIFEG 495 (1102)
Q Consensus 421 ~~las~--~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---d~~i~vWd~~~~~~~~~~~~ 495 (1102)
+.+|+. ..++.|.+||++ ++.+. .+ +...+..|.|+|+|+ +|++++. .|.|.+||+++.+.+..+.
T Consensus 72 ~~favi~g~~~~~v~lyd~~-~~~i~---~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~- 142 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK-GKKIF---SF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE- 142 (194)
T ss_pred CEEEEEEccCCcccEEEcCc-ccEeE---ee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence 998765 356799999997 33332 23 356788999999999 6776654 4679999999999888876
Q ss_pred CCCCeEEEeeeecCCccEEEEEeC------CCeEEEEEcC
Q 001311 496 HEAPVYSVCPHHKENIQFIFSTAL------DGKIKAWLYD 529 (1102)
Q Consensus 496 h~~~v~~v~~~~~~~~~~l~s~s~------dg~i~~wd~~ 529 (1102)
|. .+..++| +++|++|+++.. |+.++||+..
T Consensus 143 ~~-~~t~~~W--sPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 143 HS-DATDVEW--SPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cC-cEEEEEE--cCCCCEEEEEEeccceeccccEEEEEec
Confidence 43 3667787 567789988874 7889999885
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=3.6e-10 Score=113.16 Aligned_cols=214 Identities=12% Similarity=0.137 Sum_probs=140.4
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEE-ccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS-YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd-~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
.+.||.+.|++...-|-..-+.+.+.|.+++||- .+.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 5789999999999999888999999999999995 4444433221 112346789999999888 6888889999988
Q ss_pred EeCCC----CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 482 WDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 482 Wd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
+.+.. -..++....|...|..+.|+..+ .++++.+.|..+.---.+.+..+-.+. +
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~------------------~ 154 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYN------------------F 154 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceE------------------e
Confidence 87653 34456667899999999886544 689999998877532222222211110 0
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC--CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
...... ..+.- .+...|...|.|.+-.+. .-.++.++.++ ...+.+++|.+....|.+|..|..+.+||+
T Consensus 155 ~~~~t~----~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 155 ETPASA----LQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred eccCCC----Cceee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 000000 00000 023334444555444433 33445555544 558999999999999999999999999998
Q ss_pred cCCccceeecccc
Q 001311 636 SDGIRLLRTFENL 648 (1102)
Q Consensus 636 ~~~~~~~~~~~~~ 648 (1102)
.........+.+|
T Consensus 227 gg~~g~~~el~gh 239 (404)
T KOG1409|consen 227 GGRKGTAYELQGH 239 (404)
T ss_pred cCCcceeeeeccc
Confidence 6654334444433
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=1.8e-09 Score=124.79 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=139.3
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---CcEEEEEeecceeeeeeccccccceeEEEecCCC
Q 001311 827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 903 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 903 (1102)
..|.++|..... .+.+..+...+...+|+| |+++|+.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 358888876433 455555666788999999 89988887654 48999999887643 3344556677899999998
Q ss_pred EEEE-EcCCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC----CeEEEEEcCCceEeee
Q 001311 904 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 976 (1102)
Q Consensus 904 ~l~s-~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d----~~i~iwd~~~~~~~~~ 976 (1102)
.|+. .+.++ .|++||+.+++.. .... +. .......|+|||++|+...+ ..|+++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLT-----RLTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEE-----ECCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 5888898875431 1111 11 13456789999999887422 2688889887765433
Q ss_pred eccCCCCCCeeEEEEcCCCcEEEEEeCCC---eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 977 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++.... +. .. .. .. ...|+| |++.|+.
T Consensus 318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~--~~-~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT--GL-DE--SPSFAP-NGRMILY 381 (417)
T ss_pred e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC--CC-CC--CceECC-CCCEEEE
Confidence 2 2345677889999999999888776 89999998865432 22 11 01 11 467899 5777777
Q ss_pred EecCCc
Q 001311 1054 GLSDGG 1059 (1102)
Q Consensus 1054 ~~~Dg~ 1059 (1102)
.+.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 666653
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=1.2e-08 Score=107.92 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEE
Q 001311 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 946 (1102)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 946 (1102)
...++|+++.... +....+-.++|...+|.|+++.+++.+ .+..+.++|+.+. ...-.++. .-..+
T Consensus 254 esnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~------~rNT~ 321 (561)
T COG5354 254 ESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ------KRNTI 321 (561)
T ss_pred cceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc------ccccc
Confidence 3568888887433 333335678999999999988877654 6788999999873 12222222 33678
Q ss_pred EEccCCcEEEE-Ee---CCeEEEEEcCCceEee-eeccCCCCCCeeEEEEcCCCcEEEEEe------CCCeEEEEEcCCc
Q 001311 947 QFHQDQIHFLV-VH---ETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANL 1015 (1102)
Q Consensus 947 ~~spdg~~l~~-~~---d~~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~s------~Dg~I~vwd~~~~ 1015 (1102)
.|+|.+++++. +. .|.+.+||....-.+. .+. .....-+.|+||++++.+.. .|..|.|||+...
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 89999999998 43 3689999988755444 443 33456678999999987765 4788999998654
Q ss_pred e
Q 001311 1016 K 1016 (1102)
Q Consensus 1016 ~ 1016 (1102)
.
T Consensus 398 ~ 398 (561)
T COG5354 398 K 398 (561)
T ss_pred h
Confidence 3
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.1e-08 Score=109.64 Aligned_cols=237 Identities=10% Similarity=0.079 Sum_probs=149.7
Q ss_pred EecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe-C-CCcEE
Q 001311 814 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 873 (1102)
Q Consensus 814 ~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~-dg~v~ 873 (1102)
++||++.++++. ++.|.+||..+.+.+.++..... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999877664 36799999999999988874322 244789999 898888766 3 68999
Q ss_pred EEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCC-cEEEEcc-C
Q 001311 874 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQFHQ-D 951 (1102)
Q Consensus 874 vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp-d 951 (1102)
+.|+.+++.+.++.-.. ...-...+ +...++ -+.||......++...........++.+... .+ ..-.|++ |
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~d 205 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKS 205 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEec-CCccEE-EeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCC
Confidence 99999999888776422 11111221 112221 1234444433333211111111122111000 00 0114566 9
Q ss_pred CcEEEEEeCCeEEEEEcCC-----ceEeeeeccCC-----CCCCeeEEEEcCCCcEEEEEeC----------CCeEEEEE
Q 001311 952 QIHFLVVHETQLAIFETTK-----LECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFS 1011 (1102)
Q Consensus 952 g~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-----h~~~v~~l~~spd~~~l~s~s~----------Dg~I~vwd 1011 (1102)
|+++.++.+|.|.+.|+.+ ......+.... ..+.+.-+++++|++.++.... .+.|.++|
T Consensus 206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 9999998889999999543 33332221110 1333445999999999887542 24799999
Q ss_pred cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001311 1012 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
..+++.+.++. .... .+ .++++|+ ++ +|.+.. .++.|.+.|+.+++
T Consensus 286 ~~t~kvi~~i~----vG~~-----~~--~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGKRLRKIE----LGHE-----ID--SINVSQD-AKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCCeEEEEEe----CCCc-----ee--eEEECCC-CCeEEEEeCCCCCcEEEEECcCCe
Confidence 99999999887 2211 33 8999994 66 666555 68899999999887
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.8e-09 Score=124.65 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=135.7
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecC--CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
.+......+...+...+|||||++|+.+...+ ..|.+||+.+++... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 34455567888899999999999865555443 369999998886543 22223445678
Q ss_pred EEccCCCeEEE-EECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCee
Q 001311 415 IWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAK 489 (1102)
Q Consensus 415 ~~spdg~~las-~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~ 489 (1102)
+|||||++|+. .+.++ .|.+||+.+++..+ +..+........|+|||+. ++++...++ .|.++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence 99999999885 44454 68888999876432 4456666777899999996 333433333 578888888775
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeC-CC--eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
..... .........| +++|+.|+..+. ++ .|.+||+.+++... +.. ......
T Consensus 324 ~~lt~-~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~-------------------- 378 (430)
T PRK00178 324 ERVTF-VGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDES-------------------- 378 (430)
T ss_pred EEeec-CCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCC--------------------
Confidence 43221 1122223455 456677766654 33 47788887654321 111 111112
Q ss_pred EEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311 567 VVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 616 (1102)
..|+|+|+.++..+.+ ..|+++++.. .....+.... ..+...+|+|
T Consensus 379 -p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 379 -PSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred -ceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 2455555666655432 3577777743 3334444322 2355666766
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=1.2e-09 Score=109.37 Aligned_cols=277 Identities=14% Similarity=0.218 Sum_probs=172.4
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCee---EEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER---LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
...+-|.+|.|..+|.+ ||||..+|.|.++.-..... .....|+..+.. ..+.. --.-...|..+.|.+++
T Consensus 23 teadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE---FDYLk--SleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE---FDYLK--SLEIEEKINKIRWLDDG 96 (433)
T ss_pred chhcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcc---cchhh--hhhhhhhhhhceecCCC
Confidence 35578999999999996 99999999999997543221 011111111000 00000 01123578899999865
Q ss_pred C--eEEEEECCCeEEEEEccCCceee--------------------------------eEEE-eeccccCEEEEEEcCCC
Q 001311 421 S--LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPN 465 (1102)
Q Consensus 421 ~--~las~~~d~~v~vwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~v~~s~d~ 465 (1102)
. .+...+.|.+|++|.+....... +... -.+|.--|++|.++.|.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 4 56677899999999876432111 0000 13577779999999998
Q ss_pred CeeEEEEecCCCcEEEEeCCCCee---eEEeecC-----CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee--
Q 001311 466 KQLCVITCGDDKTIKVWDATNGAK---QYIFEGH-----EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-- 535 (1102)
Q Consensus 466 ~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h-----~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-- 535 (1102)
. .++++ +|=.|.+|+++--.. +..++.+ +..|++..|++... ++++-.+..|+|++-|++.....-
T Consensus 177 E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 177 E--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred c--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcch
Confidence 8 56655 477899999874322 2222222 34577788887655 567777778999999998532211
Q ss_pred --eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC-CCcceEEEEcCCCCC------
Q 001311 536 --DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL------ 606 (1102)
Q Consensus 536 --~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------ 606 (1102)
.+..+..+. . +.+...--..|.-+.|+.+|+++++-+ --+|++||+ ...+++.+++.|...
T Consensus 253 sKlfEepedp~--------~-rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 253 SKLFEEPEDPS--------S-RSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhccccCCc--------c-hhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 111111111 0 000011112455567777777777644 358999999 456667776654321
Q ss_pred ----CCc---CeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311 607 ----PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 607 ----~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
..| ..++|+.++.++++|+....+++++...|..
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 112 3588999999999999999999999766633
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.1e-09 Score=121.98 Aligned_cols=228 Identities=10% Similarity=0.069 Sum_probs=132.9
Q ss_pred eeccCCCCeeEEEEecCCCe--EEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 341 RTLNQGSSPMSMDFHPVQQT--LLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~--llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
.+......+..-+|||||+. ++++...+| .|.+.++.+++... +....+.....+|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~w 238 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTF 238 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEE
Confidence 33345556678899999986 333544444 58888888776543 2223445567899
Q ss_pred ccCCCeEEEEEC-----CCeEEEEEccCCc--eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE--eCCC-
Q 001311 417 SPDGSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN- 486 (1102)
Q Consensus 417 spdg~~las~~~-----d~~v~vwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW--d~~~- 486 (1102)
||||+.||..+. |-.+.+|++.++. ..+.+ ..++.+.....+|+|||+. ++++...++...+| ++..
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECccc
Confidence 999999987653 2234457776532 12221 2223344567899999995 23334456655555 4432
Q ss_pred CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311 487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 563 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 563 (1102)
+.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++... +......+....|+
T Consensus 316 g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wS------------- 379 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWA------------- 379 (428)
T ss_pred ccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEEC-------------
Confidence 3334555555556666677 4566777766543 468899988765432 22212223344444
Q ss_pred ceeEEEEcCCCCEEEEEe---CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311 564 SLGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 618 (1102)
Q Consensus 564 ~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 618 (1102)
|+|+.|+... ....|++||+.+++........+ .+...+|+|-.
T Consensus 380 --------pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 380 --------IDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred --------CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence 4445555432 24679999998877655443222 35567888743
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.5e-09 Score=124.27 Aligned_cols=223 Identities=11% Similarity=0.042 Sum_probs=131.5
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
.....+...+.+.+|||||++|+.+...++ .|.+||+.+++.... ....+.....+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wS 270 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFS 270 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeEC
Confidence 345557778899999999998665554444 588999988765331 1112234568999
Q ss_pred cCCCeEEE-EECCCe--EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCeeeEE
Q 001311 418 PDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYI 492 (1102)
Q Consensus 418 pdg~~las-~~~d~~--v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~~~~ 492 (1102)
|||+.|+. .+.++. |.+||+.+++..+ +..+...+...+|+|||+. ++++...++ .|.++|+.+++...
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~- 344 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR- 344 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-
Confidence 99998876 455664 7778888876432 4455566778999999996 334443344 47777887776543
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEeC-CCe--EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
+..+.......+| +++|++|+..+. ++. |.++|+.++... .+... ...... .
T Consensus 345 Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~p---------------------s 399 (448)
T PRK04792 345 LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESP---------------------S 399 (448)
T ss_pred EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCc---------------------e
Confidence 2212222233455 456667766554 443 444566554321 11111 011112 3
Q ss_pred EcCCCCEEEEEe-CCC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311 570 FDTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 616 (1102)
Q Consensus 570 ~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 616 (1102)
|+|+|+.|+..+ .++ .+++++. +|.....+..... .+...+|+|
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG--EVKSPAWSP 446 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence 555556665544 333 4777787 4555565654322 456677876
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=4.6e-09 Score=121.29 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=124.3
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--c
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 478 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~ 478 (1102)
+..+...+...+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566679999999999999987654 479999999886432 3445667778999999985 344554444 5
Q ss_pred EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CC--eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311 479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1102)
|++||+.++... .+..+........|+ ++|+.|+..+. ++ .|.++|+.+++. ..+.....
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~------------- 322 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG------------- 322 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC-------------
Confidence 899998877643 344454444455664 56677766554 33 566677654332 12221222
Q ss_pred eeeccccCceeEEEEcCCCCEEEEEeCCC---eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311 556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 628 (1102)
Q Consensus 556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 628 (1102)
......|+|++++++.++.++ .|.+||+.++.. ..+.... ......|+|||++|+..+.++
T Consensus 323 --------~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 --------YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred --------CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 223445666667777777665 799999987654 3333222 234578999999988877654
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.4e-09 Score=115.74 Aligned_cols=173 Identities=18% Similarity=0.304 Sum_probs=138.6
Q ss_pred cCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE-------------------
Q 001311 356 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW------------------- 416 (1102)
Q Consensus 356 pdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------------------- 416 (1102)
|-+. ++|....||.++|||..+++....+. -...-.+..++..|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~----------------p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFA----------------PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeec----------------cchhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 3345 48999999999999999887765311 01112233444444
Q ss_pred -ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311 417 -SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495 (1102)
Q Consensus 417 -spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~ 495 (1102)
+.|-..||-|...|.|.+|++..|+.... .+-..|.+.|.++.++.+-. .|.|++.|+.+.+|+..++..++.+.+
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 22445677788899999999999985543 23457999999999998888 799999999999999999999999999
Q ss_pred CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311 496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552 (1102)
Q Consensus 496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1102)
....+.++|. .+||..+++++ +.|++||+.+.+....|.+|.+.|.++.|..+
T Consensus 143 ~~~~~~sl~i--s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 143 QKPLVSSLCI--SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred CCCccceEEE--cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 9999999996 45678898887 79999999999999999999999999998665
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.3e-08 Score=108.35 Aligned_cols=295 Identities=12% Similarity=0.152 Sum_probs=183.5
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..|.-+.|||+.++|++-+..-.+.-|+- .....+.+||+.+|.+.............-.-+.||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 34677888888888887765422222210 0011245666677776554332111222233468999999
Q ss_pred eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEEEeecceeeeeeccccccce
Q 001311 820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 894 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1102)
|+|--...+|.||+..+..++-.-.-....|....|+| .+++||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988878999999877554433233356788999999 88888865432 3677777777777766655544444
Q ss_pred eEEEecCCCEEEEEcC----------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--Ee--C
Q 001311 895 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E 960 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~--d 960 (1102)
.|-|-.+|.+|+.--. =..+.|+.+..... ....+.+. ..|...+|-|.|..+++ +. .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velk-------e~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELK-------ESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecc-------hheeeeeeccCCCeEEEEEccccc
Confidence 5777788888875321 12245555544221 11112111 36788999999999888 32 3
Q ss_pred CeEEEEEcCC-ce---EeeeeccCCCCCCeeEEEEcCCCcEEEEEe---CCCeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311 961 TQLAIFETTK-LE---CVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus 961 ~~i~iwd~~~-~~---~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
.++.+|.+++ .. .+..+. ....+.+.|+|.|++++.+. ..|.+..+|.+...+...-. +.+
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh--- 537 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEH--- 537 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccc---
Confidence 4788898873 22 222222 45678899999999988665 46889999988533322211 111
Q ss_pred CcccceEEEecCCCCCEEEEEec------CCcEEEEeccCCC
Q 001311 1034 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1069 (1102)
Q Consensus 1034 ~~v~~~~v~f~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1069 (1102)
-....+.|.|. |++++|+++ |..-++|++....
T Consensus 538 --~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 538 --FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred --cccccceECCC-CCEEEEeeehhhhccccceEEEEeecHH
Confidence 11226889994 899999886 4566788875543
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.2e-08 Score=108.65 Aligned_cols=321 Identities=11% Similarity=0.158 Sum_probs=202.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC-----------CcEEEE
Q 001311 565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKIL 633 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw 633 (1102)
-+.+.|+|.|.+|++--..| |.+|--.+...++.+. |. .|.-+.|||..++|++-+.. ..+.||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 34567777777888876655 8899777766677765 22 47889999999999987532 457778
Q ss_pred EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311 634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 713 (1102)
Q Consensus 634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 713 (1102)
|+.+| ...+.+... . +.
T Consensus 288 DI~tG-~lkrsF~~~------------------~--------------------------------------------~~ 304 (698)
T KOG2314|consen 288 DIATG-LLKRSFPVI------------------K--------------------------------------------SP 304 (698)
T ss_pred Ecccc-chhcceecc------------------C--------------------------------------------CC
Confidence 87777 443333210 0 00
Q ss_pred cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311 714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 793 (1102)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 793 (1102)
. ..-.-+.||.|+++++.-..| .|.||+...- .+.|.
T Consensus 305 ~-------------------------~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--------------~lld~--- 341 (698)
T KOG2314|consen 305 Y-------------------------LKWPIFRWSHDDKYFARMTGN-SISIYETPSF--------------MLLDK--- 341 (698)
T ss_pred c-------------------------cccceEEeccCCceeEEeccc-eEEEEecCce--------------eeecc---
Confidence 0 111235788999988777664 6777764210 11111
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCeEEEEe---C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311 794 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 867 (1102)
Q Consensus 794 ~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s---d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 867 (1102)
+.+ .-..|....|+|.+..||.-. + ..+.+..+.+++.+++...+.-.=..+-|-. .|.+|+.--
T Consensus 342 Ksl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkv 412 (698)
T KOG2314|consen 342 KSL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKV 412 (698)
T ss_pred ccc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEE
Confidence 100 235588899999999999765 2 3588888888888887766654445566766 677776432
Q ss_pred ----------CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC---CcEEEEEcCCCcccceeeeecCC
Q 001311 868 ----------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPT 934 (1102)
Q Consensus 868 ----------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~ 934 (1102)
.=..+.|+.++....--..-.-...|...+|-|.|..+++.+.. .++.+|.+++... ....+..+.
T Consensus 413 dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~d 491 (698)
T KOG2314|consen 413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELD 491 (698)
T ss_pred EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhc
Confidence 11134455554432211112245678899999999888765543 5789998885221 222233332
Q ss_pred CCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC------
Q 001311 935 GRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ 1004 (1102)
Q Consensus 935 ~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D------ 1004 (1102)
. .....+.|+|.|++++++ ..|.+..+|..-..+..+-.+ . -...+.+.|.|.|+|+++++.-
T Consensus 492 k-----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d 564 (698)
T KOG2314|consen 492 K-----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVD 564 (698)
T ss_pred c-----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhccc
Confidence 2 245789999999999883 468899999885333322111 2 3356788999999999998853
Q ss_pred CeEEEEEcC
Q 001311 1005 ATVCVFSAA 1013 (1102)
Q Consensus 1005 g~I~vwd~~ 1013 (1102)
.--+||++.
T Consensus 565 ~GYri~tfq 573 (698)
T KOG2314|consen 565 NGYRIFTFQ 573 (698)
T ss_pred cceEEEEee
Confidence 335555554
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.8e-09 Score=114.17 Aligned_cols=188 Identities=16% Similarity=0.302 Sum_probs=148.8
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCceeeeecCC---CCCeeEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 872 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~lasg~~dg~v 872 (1102)
|...++|... ||.+++|+...++....+... .+..++.+|. | .|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456788777 999999999998887776532 3344444442 1 134488899999999
Q ss_pred EEEEeecceeeeeec--cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 873 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 873 ~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
.+|++..++....+. .|.+.|.++.++.+-..|.|++.|+.+..|+...... +....+..+ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-----~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-----IRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-----eeeeccCCC---ccceEEEcC
Confidence 999999999888885 5999999999999999999999999999999987543 333433332 688999999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC-----CcEEE-EEeCCCeEEEEEcCC
Q 001311 951 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVY-ACFLDATVCVFSAAN 1014 (1102)
Q Consensus 951 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd-----~~~l~-s~s~Dg~I~vwd~~~ 1014 (1102)
||+.++++ .++|.+||+++++.+..|. ||.++|.++.|.-+ |.++. +...+..|.+|-++.
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 4689999999999999998 99999999999887 66655 444566688887654
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.9e-08 Score=116.21 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=123.6
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--c
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 478 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~ 478 (1102)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 369999999886432 3333445667899999995 333554454 6
Q ss_pred EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CC--eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311 479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1102)
|++||+.+++.. .+..+........| +++|+.|+..+. +| .|.++++.+++.. .+.....
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~--spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~------------- 331 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFW--GKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN------------- 331 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-------------
Confidence 888899887654 45545555555666 455566655543 33 4666666554321 1111111
Q ss_pred eeeccccCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC-C--c
Q 001311 556 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 629 (1102)
Q Consensus 556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 629 (1102)
......|+|+++.++..+. ++ .|.+||+.+++.. .+... . ......|+|||++++..+.+ | .
T Consensus 332 --------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 332 --------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred --------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 1123456666677766553 22 5889999887653 33321 1 12356899999999877654 3 3
Q ss_pred EEEEEcc
Q 001311 630 IKILATS 636 (1102)
Q Consensus 630 i~iwd~~ 636 (1102)
|.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555553
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2e-08 Score=115.10 Aligned_cols=210 Identities=10% Similarity=0.078 Sum_probs=132.2
Q ss_pred eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CC--cEEEEEeecceeeeeeccccccceeEEEecCCCE
Q 001311 828 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 904 (1102)
Q Consensus 828 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~ 904 (1102)
.|.++|...... +.+..+...+....|+| ||+.|+..+. ++ .|++||+.+++.. .+....+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCE
Confidence 577778755433 44555667788999999 8888877653 33 6889998877642 22222333457899999998
Q ss_pred EEE-EcCCCc--EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--C--CeEEEEEcCCceEeeee
Q 001311 905 LVS-SGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--E--TQLAIFETTKLECVKQW 977 (1102)
Q Consensus 905 l~s-~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d--~~i~iwd~~~~~~~~~~ 977 (1102)
|+. .+.++. |.+||+.+++.. .... +. ......+|+|||++|+... + ..|+++|+.+++.....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-----~lt~-~~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-----RITR-HR---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-----ECcc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 875 455665 777788775431 1111 11 2456789999999988743 2 35777788877754432
Q ss_pred ccCCCCCCeeEEEEcCCCcEEEEEeCC-C--eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE
Q 001311 978 VPRESSAPITHATFSCDSQLVYACFLD-A--TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1054 (1102)
Q Consensus 978 ~~~~h~~~v~~l~~spd~~~l~s~s~D-g--~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~ 1054 (1102)
. . .......+|+|||++|+..+.+ + .|.++|+.+++... +. .+ .. .. ...|+| |++.|+..
T Consensus 347 ~-~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt------~~--~~-d~--~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 347 F-E--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT------ST--RL-DE--SPSVAP-NGTMVIYS 410 (448)
T ss_pred c-C--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc------CC--CC-CC--CceECC-CCCEEEEE
Confidence 1 1 2233457999999998876653 3 46667888886532 22 11 01 11 347899 56665554
Q ss_pred e-cCCc--EEEEec
Q 001311 1055 L-SDGG--VHVFEP 1065 (1102)
Q Consensus 1055 ~-~Dg~--v~vW~~ 1065 (1102)
+ .+|. +++++.
T Consensus 411 ~~~~g~~~l~~~~~ 424 (448)
T PRK04792 411 TTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEEC
Confidence 4 4444 556665
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=4.1e-08 Score=111.33 Aligned_cols=304 Identities=12% Similarity=0.069 Sum_probs=179.3
Q ss_pred EEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 548 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1102)
.++.++.++.|..+|..+|+.+..+.-......... .++..++.++.++.+..+|..+++..............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-- 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP-- 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC--
Confidence 477888889999999999999877654332222222 22357888889999999999888776654432211000
Q ss_pred EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCC---cCeEEEcCCCCEEEEEE
Q 001311 549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST 625 (1102)
Q Consensus 549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~ 625 (1102)
..+ .+..++.++.++.|+.||.++|+.+..+........ ..+..+ .+..++++.
T Consensus 141 -------------------p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 141 -------------------PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred -------------------CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 001 124577778899999999999998887764322100 011122 224677888
Q ss_pred CCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcc
Q 001311 626 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 705 (1102)
Q Consensus 626 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 705 (1102)
.+|.+..+|..++..... ...... .+
T Consensus 198 ~~g~v~ald~~tG~~~W~-~~~~~~---------------~g-------------------------------------- 223 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWE-QRVALP---------------KG-------------------------------------- 223 (377)
T ss_pred CCCEEEEEEccCCCEeee-eccccC---------------CC--------------------------------------
Confidence 889999999888832211 100000 00
Q ss_pred ccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccc
Q 001311 706 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 785 (1102)
Q Consensus 706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 785 (1102)
.. ...++.+.. ... .+ .+..+++++.+|.+..||..+++
T Consensus 224 ---~~-~~~~~~~~~------------------~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 224 ---RT-ELERLVDVD------------------GDP----VV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ---CC-chhhhhccC------------------Ccc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 00 000000000 000 11 13356677778888888763321
Q ss_pred eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEE
Q 001311 786 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNII 863 (1102)
Q Consensus 786 ~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~l 863 (1102)
.+|....+ .....+ .++..+++++ +|.|..+|..+++.+........ ....... .+..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence 23433210 011122 2345565555 89999999999987765532222 2222233 24578
Q ss_pred EEEeCCCcEEEEEeecceeeeeecccccccee-EEEecCCCEEEEEcCCCcEEEE
Q 001311 864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW 917 (1102)
Q Consensus 864 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vw 917 (1102)
++++.+|.|+++|..+++.+.++..+...+.. .++. + ..|+.++.||.|..|
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 88999999999999999999888766654433 3333 3 358888899988765
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=9.2e-08 Score=108.47 Aligned_cols=230 Identities=16% Similarity=0.110 Sum_probs=137.4
Q ss_pred CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEc
Q 001311 358 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY 437 (1102)
Q Consensus 358 g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~ 437 (1102)
+.+ +++++.++.|.-+|..+|+.+-...+. ..... ..+ .++..+++++.++.+..+|.
T Consensus 65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 65 GGK-VYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CCE-EEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEEC
Confidence 443 778888899999999999887542221 00111 111 25788888999999999999
Q ss_pred cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE-----EEeeeecCCcc
Q 001311 438 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-----SVCPHHKENIQ 512 (1102)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~~ 512 (1102)
++|+.+.... + .+.+.+.-... +. .++.++.++.|..||.++|+.+..+......+. +... . + .
T Consensus 123 ~tG~~~W~~~-~---~~~~~~~p~v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~ 191 (377)
T TIGR03300 123 EDGKELWRAK-L---SSEVLSPPLVA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-G 191 (377)
T ss_pred CCCcEeeeec-c---CceeecCCEEE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-C
Confidence 9998764321 1 12222211112 33 366677899999999999999887754332211 1111 1 2 3
Q ss_pred EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001311 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 592 (1102)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 592 (1102)
.++.+..++.+..+|..+++......... +.+...... .........+ .+..++.++.+|.++.||..
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~-~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELER-LVDVDGDPVV--DGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhh-hhccCCccEE--ECCEEEEEEcCCEEEEEECC
Confidence 67888888999999998876654332110 000000000 0000000011 13467888889999999999
Q ss_pred CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 593 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+|+.+....... ..... .++..+++++.+|.+..+|..++
T Consensus 260 tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 260 SGRVLWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred CCcEEEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 998777665211 11122 24567777778888888887666
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=9.7e-09 Score=101.04 Aligned_cols=199 Identities=13% Similarity=0.122 Sum_probs=136.2
Q ss_pred eeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee-cceeee
Q 001311 809 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 884 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~ 884 (1102)
..++.|++-+..++++. +|.+.+-+....... +..++|.-++..+.|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888888776 788886665544443 47889999999999998788999999999999999998 344444
Q ss_pred e-eccccccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEEEEEeC
Q 001311 885 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHE 960 (1102)
Q Consensus 885 ~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~d 960 (1102)
. -+-|...|.+|.-+| .+.+++||+.|-.|++||...-.+ ++ ..+ ...+.|..+..+|. ++.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl--~~~--~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PL--FKA--KVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----cc--ccC--ccccceEEEEecchhhhHHHHHHHh
Confidence 3 466888899998885 578999999999999999885221 11 111 11257889999885 344555555
Q ss_pred CeEEEEEcCCceEe---eeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEE-EEEcCCc
Q 001311 961 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANL 1015 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~-vwd~~~~ 1015 (1102)
+..+|.+...+... .......|.+-...-.|.....+|||++ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 55666666543322 1112235555555556644445788865 466644 6655444
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.5e-08 Score=111.25 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=118.5
Q ss_pred cCCCCCCeEEEEEccCCCeEE---EEECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC---
Q 001311 404 VKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--- 475 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~la---s~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--- 475 (1102)
+......+..-+|||||+.++ +...++ .|.+.++.+++..+ +....+.....+|+|||+.+ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334455677889999998633 333343 57788998886433 33344556678999999963 333322
Q ss_pred -CCcEEEEeCCCC---eeeEEeecCCCCeEEEeeeecCCccEEEEEe-CCCeEEEEEc--CCC-CCeeeecCCCCeeeEE
Q 001311 476 -DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTM 547 (1102)
Q Consensus 476 -d~~i~vWd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~--~~~-~~~~~~~~~~~~v~~~ 547 (1102)
|..+.+|++..+ +......++.+.....+| ++||+.|+..+ .+|...+|.+ ... .....+.....
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~----- 327 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR----- 327 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----
Confidence 334455777653 333333333333445566 56667666555 4665555643 221 11222222222
Q ss_pred EEccCCceeeeccccCceeEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311 548 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
.+....|+|+|+.|+..+. ...|++||+.+++....... . ..+....|+|||+.|+..
T Consensus 328 ----------------~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~--~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 328 ----------------NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P--ENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ----------------CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C--CCccceEECCCCCEEEEE
Confidence 2234455666666665543 24799999988876543322 1 245679999999988865
Q ss_pred EC---CCcEEEEEccCC
Q 001311 625 TN---DNGIKILATSDG 638 (1102)
Q Consensus 625 ~~---dg~i~iwd~~~~ 638 (1102)
.. ...|.+|++.++
T Consensus 389 ~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 389 AGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCceEEEEECCCC
Confidence 43 346778887766
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.7e-10 Score=128.29 Aligned_cols=217 Identities=17% Similarity=0.173 Sum_probs=146.8
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
...|+..-+|++||-+.++ |+.|+..|.|+++++.+|.... ....|..+|+.+.=|.||.
T Consensus 1097 frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~-------------------s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEE-------------------SVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred hhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccc-------------------cccccccccccccccCCcc
Confidence 3458889999999999997 9999999999999999997765 3779999999999999999
Q ss_pred eEEEEECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecC--
Q 001311 422 LFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH-- 496 (1102)
Q Consensus 422 ~las~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h-- 496 (1102)
.+.+.+.-. ...+|+..+- ....+++. .-.++.|+....+ .++.+. ...+.+||++++..+.++ .+.
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RALGTE-ADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred eeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHhccc-ccceEEEecccCcHHHHhcCcchh
Confidence 988765433 5789998762 22222332 3467889877553 333333 346789999999887763 221
Q ss_pred -CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311 497 -EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 497 -~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
...-++..|++ ...+++ .||. +||++..+.+..+..-.. ...-.|+|.|+
T Consensus 1229 ~~y~~n~a~FsP--~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~----------------------~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSP--CDTLIL---NDGV--LWDVRIPEAIHRFDQFTD----------------------YGGGGFHPSGN 1279 (1516)
T ss_pred hhhhccccccCC--CcceEe---eCce--eeeeccHHHHhhhhhhee----------------------cccccccCCCc
Confidence 11123444544 334444 3454 599987766554432110 01123677777
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
.++.-+ .|||+++.+.++....-.. ..+.|+..|..++..
T Consensus 1280 eVIINS-----EIwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1280 EVIINS-----EIWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEeec-----hhhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence 787755 4899999988877654332 457888877766543
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=1.1e-07 Score=118.97 Aligned_cols=256 Identities=9% Similarity=0.077 Sum_probs=162.3
Q ss_pred eEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeecC--------------CCCCeeEEEEecCCCcEEEEEe-CCCcE
Q 001311 810 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIGM-DDSSI 872 (1102)
Q Consensus 810 ~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d~~~lasg~-~dg~v 872 (1102)
..+++++++. .+++-. ++.|++||... ..+..+.+ .-.....+++++ +++.|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688887644 444444 68899999764 44433322 112367899999 666555544 45789
Q ss_pred EEEEeecceeeeeecc--c---------------cccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCccccee---eee
Q 001311 873 QIYNVRVDEVKSKLKG--H---------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FLQ 931 (1102)
Q Consensus 873 ~vwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~~ 931 (1102)
+++|+.++.. .++.+ . -..-+.|+|+| ++.++++.+.++.|++||..++...... ...
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877543 33311 0 11235799999 5667777788899999998775431100 000
Q ss_pred cCCCCC---CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEeeeec-----------cC--------CCCCCee
Q 001311 932 IPTGRT---PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-----------PR--------ESSAPIT 987 (1102)
Q Consensus 932 ~~~~~~---~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~~~~-----------~~--------~h~~~v~ 987 (1102)
...+.. ........++++|+|++|.++ .++.|++||+.++....... .. ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000110 011245779999999866653 67899999998765321110 00 0112356
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc-ccCCCC--CCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311 988 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus 988 ~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~~~~gh--~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
.++++++|.++++-+.++.|++||..++.......... ....|. ...--.|..+++++ +|+++++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999998988899999999999887664332110 000110 01112466899998 688999999999999999
Q ss_pred ccCCC
Q 001311 1065 PLESE 1069 (1102)
Q Consensus 1065 ~~~~~ 1069 (1102)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98876
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=2.9e-08 Score=97.75 Aligned_cols=190 Identities=19% Similarity=0.131 Sum_probs=129.8
Q ss_pred CCCeeEEEEe---cCCCeEEEEEecCCeEEEEeCCCCeeEEe-eeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 346 GSSPMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 346 ~~~v~~v~~s---pdg~~llasg~~d~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
++.+..+.|. -+|...++-+-.+|.|.++...-.+.... +.+.. ..-....-.++.|++.|.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 4455666665 24554566677778888887643322221 11100 000011345788999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCeeeEE-eecCCCC
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP 499 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~~~~~-~~~h~~~ 499 (1102)
.++++..+|.+.+-+.... .+....++++|.-..+...|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985554433 23444468899999999999987776 89999999999999999 4555554 4568888
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1102)
|.++.-++ +.+.+|++|+.|..|++||.++......-....+.|..+..+|.
T Consensus 213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence 98886543 45679999999999999999976655433334455666655554
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=2e-09 Score=128.99 Aligned_cols=197 Identities=18% Similarity=0.333 Sum_probs=155.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 423 (1102)
.+-..|.++.=+|...+ .+||+.||.|++|.+..++.+.. |+ -.|. ..|+.+.|+.+|+..
T Consensus 2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCce
Confidence 35678899999999986 89999999999999988877653 11 2233 789999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec---CCCcEEEEeCCCC---eeeEEeecCC
Q 001311 424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNG---AKQYIFEGHE 497 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~vWd~~~~---~~~~~~~~h~ 497 (1102)
..+..||.+.+|.... +.....+.|....+...|-. . .+++++ .++.+.+||..-. .++. ..|.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~ 2336 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHD 2336 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecC
Confidence 9999999999999873 34445778999999999976 3 466664 5789999996532 2333 7799
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
+.++++++.| ..++|++|+.+|.|++||++..+.+..+.. ++ ...++
T Consensus 2337 ~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f 2383 (2439)
T KOG1064|consen 2337 GGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYF 2383 (2439)
T ss_pred CCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhhee
Confidence 9999999754 448999999999999999998666554432 11 22579
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcC
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
++++..|.|+||++.....+..+..
T Consensus 2384 ~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eccCcccceEEEEccccchhhcCch
Confidence 9999999999999998877777653
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.5e-09 Score=114.60 Aligned_cols=210 Identities=15% Similarity=0.188 Sum_probs=149.6
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC-cee---eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 478 (1102)
.+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+ ....++..|..+|.++.|..+.+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 57899999999988888999999999999999998742 222 25567889999999999999988 56655 789
Q ss_pred EEEEeCCCCeeeEEee-----cCCCCeEEEeeeecCCccEEEEE-eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311 479 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1102)
|.+||.--|+.+..+. +..+.|.++ ++-+..+++.| +...+|+++|.+..+-...+..... |
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~- 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------P- 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC--------C-
Confidence 9999988887765332 223334443 33344555555 6789999999887654433321110 0
Q ss_pred CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
..+..+.++++.+.|++++++-..|.|.+.|.++|+.+.....-.. ....++ .|..+.|+....|.++.+
T Consensus 874 -------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 874 -------GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred -------CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence 1123566788888889999999999999999999998876653221 121122 356667777777888888
Q ss_pred -EEccCC
Q 001311 633 -LATSDG 638 (1102)
Q Consensus 633 -wd~~~~ 638 (1102)
|...++
T Consensus 944 nWhaldg 950 (1034)
T KOG4190|consen 944 NWHALDG 950 (1034)
T ss_pred eehhcCC
Confidence 876665
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=5.7e-07 Score=112.83 Aligned_cols=275 Identities=15% Similarity=0.201 Sum_probs=164.2
Q ss_pred eeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccc-cccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL-QAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 349 v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
...+++++++..++++-+.++.|.+||.... .+....- .+..-. ....-..+-.....+++++++..|.++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~------~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGS------TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEcc------CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 3478999875557888888899999998643 3321000 000000 0000111223468899999988776664
Q ss_pred -CCCeEEEEEccCCceeeeEEE-------eecc-------ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 428 -SRHIVQIYSYHGGDEVRQHLE-------IDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 428 -~d~~v~vwd~~~~~~~~~~~~-------l~~h-------~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
.++.|+++|..++.. ..+.. ..+. -..-..++|+|++.. ++++.+.++.|++||..++... .
T Consensus 643 t~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~ 719 (1057)
T PLN02919 643 TENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-V 719 (1057)
T ss_pred CCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-E
Confidence 457899999887642 21110 0000 112367999995554 6777888899999998877543 2
Q ss_pred eecC---------------CCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCCe-eeEEEEc-cCCc
Q 001311 493 FEGH---------------EAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYS-ADGT 554 (1102)
Q Consensus 493 ~~~h---------------~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s-~~~~ 554 (1102)
+.+. ......++++ +++. ++++-+.++.|++||+.++.......+.... .....|. .+|.
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavs--pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLS--PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEe--CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 2211 1123456664 4445 5566677899999999865432211100000 0000110 0110
Q ss_pred eeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC------------CCCCcCeEEEcCCCCEEE
Q 001311 555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLA 622 (1102)
Q Consensus 555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~ 622 (1102)
. ....-.....++++++|+.+++-..++.|++||..++...... +.+ .......++++++|+.++
T Consensus 798 g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 798 G--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred h--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 0 0000112346888999998888889999999999887655333 111 112456899999999988
Q ss_pred EEECCCcEEEEEccCC
Q 001311 623 VSTNDNGIKILATSDG 638 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~ 638 (1102)
+-+.++.|++||+.++
T Consensus 875 aDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 875 ADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EECCCCEEEEEECCCC
Confidence 8889999999999887
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=9.6e-09 Score=112.72 Aligned_cols=304 Identities=13% Similarity=0.150 Sum_probs=187.8
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC--CCCeEEEEEccC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIWSPD 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~spd 419 (1102)
.+.-.+.+.++.++|.|+- +|.++.-| +.|-|+...-.... ...| .-.|..+.|||.
T Consensus 20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~h 78 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSPH 78 (1081)
T ss_pred EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceecccC
Confidence 3446788999999999997 77766644 34445543211100 1111 224666778773
Q ss_pred --CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecC
Q 001311 420 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGH 496 (1102)
Q Consensus 420 --g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h 496 (1102)
-.+-++......-.+|++.....-..-..+.||...|+.+.|.+.... ++++++.|..+..||+++.. .+..+..-
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecc
Confidence 334444445566778998754443444468899999999999999887 89999999999999999864 45555544
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
...-..|.|+.. ++. +...+..+.|++||.+.+... ..+.++...+..+.|..--. .
T Consensus 158 ~s~asqVkwnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------------------s 215 (1081)
T KOG0309|consen 158 RSAASQVKWNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------------------S 215 (1081)
T ss_pred cccCceeeeccc-Ccc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh--------------------h
Confidence 445566788654 333 445556688999999987544 45566655566555533211 3
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC--EEE---------EEECCCcEEEEEccCCccceee
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLA---------VSTNDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~---------~~~~dg~i~iwd~~~~~~~~~~ 644 (1102)
.+.+.+.|++|++||.............. ...|..-.+.|-|. ++. .-.-+.....|+..++.+.+..
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~ 294 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT 294 (1081)
T ss_pred hhcccCCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee
Confidence 47888999999999987654322221111 11344444555222 222 1222333445666667778888
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311 645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 721 (1102)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 721 (1102)
+.||.+.+..- .+...+ .-+.......-.|++-+.|.++|+|.+..
T Consensus 295 F~GH~D~V~eF------lWR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 295 FVGHDDVVLEF------LWRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ecCcchHHHHH------hhhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 99998876522 111111 11111222345688999999999999875
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=1.2e-08 Score=105.11 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=110.8
Q ss_pred eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE---E
Q 001311 350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV---A 426 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las---~ 426 (1102)
..+..+|+++ ++|++..++...+.++..... ..+.++.. ... ..-+++.|..+...... +
T Consensus 66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~---~~~~ai~~~~~~~sv~v~dka 128 (390)
T KOG3914|consen 66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVP---KRPTAISFIREDTSVLVADKA 128 (390)
T ss_pred cccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecc---cCcceeeeeeccceEEEEeec
Confidence 4455566666 477777767766666644322 01111100 011 12234444444444444 4
Q ss_pred ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEee
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCP 505 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~ 505 (1102)
+....+.+|....+.+.. +-||-.-++.|+|+||++ .++++..|..|+|-....-..+..| -||+..|..++.
T Consensus 129 gD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred CCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence 555667777766554332 668999999999999999 7999999999999887766666555 579999999986
Q ss_pred eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC
Q 001311 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 539 (1102)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1102)
. ++..|+++|.|++|++||+.+++.+.++..
T Consensus 203 ~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 203 T---DNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred c---cCceeeecCCCCcEEEEecccCCcccccch
Confidence 3 336799999999999999999988765543
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=7.3e-09 Score=109.55 Aligned_cols=240 Identities=14% Similarity=0.187 Sum_probs=167.6
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC-------CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~-------~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
+|...|+.++--.+.+.+++++ |.+|++|.++ +..+..++..|..+|..+.|-. +.++++++ ||-|.+|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 4888898887777777788888 9999999986 3346778899999999999998 88888765 8899999
Q ss_pred Eeecceeeeeecc--ccccceeEEEecC--CCEEE-EEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 876 NVRVDEVKSKLKG--HSKRITGLAFSHA--LNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 876 d~~~~~~~~~l~~--h~~~V~~l~~s~d--~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
|.--++.+..+.. ..+.+..+..-++ ...++ -++...+|+++|...++-..........+. ...+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P---na~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP---NALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC---chheeEEEecc
Confidence 9887777664421 2233444443333 33343 347789999999988765443333222222 24678999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEE-EEcCCceeEEEeCCCcccC
Q 001311 951 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRINPSAYLP 1028 (1102)
Q Consensus 951 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~v-wd~~~~~~~~~~~~~~~~~ 1028 (1102)
.|++++++ ++|.|.+.|.++|+.+..|.+- .-....++ .|..+.|+....|.++.| |-.-.|....+.++.. .|
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp-ep 962 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP-EP 962 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC-cc
Confidence 99999996 9999999999999999988732 11222333 456778888888999999 9988887776655221 11
Q ss_pred CCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1029 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1029 ~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
. .|...-|..|++.-..+.+.||.-
T Consensus 963 a------------hflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 963 A------------HFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred h------------hhhhccCceeEEeccCcEEEEEec
Confidence 1 111112456666666666666654
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=1e-08 Score=123.23 Aligned_cols=200 Identities=15% Similarity=0.227 Sum_probs=155.4
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
++.|-..|.++.=+|...+-++|+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4556678999999999999999999999999999999887655443 33 8999999999999 688888899999999
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe---CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 560 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 560 (1102)
+. .+.....+.|......+.|-. ..+++++ .++.+.+||.--.... .++...
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~--------------------s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMN--------------------SLVHTC 2334 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCccc--------------------ceeeee
Confidence 65 777778888988888887754 3466654 4688999986542221 112233
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
+.+..+++++-|....|++||.+|.|++||++..+.++.++. +. ...++++|+..|.++||++..- .
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence 444667777788888999999999999999998888777653 33 5678999999999999998766 4
Q ss_pred ceeec
Q 001311 641 LLRTF 645 (1102)
Q Consensus 641 ~~~~~ 645 (1102)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 44444
No 286
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=98.84 E-value=1.6e-08 Score=97.85 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=115.4
Q ss_pred chhHHhHHHHHHHHhhhcCCCcc---------HHHHHHHHhcCCHHHHHHHhcccc--cccCccccchhhHHHHHhHhHH
Q 001311 3 KSSKKLFTSKHFLLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKIFFEIRKQKYLE 71 (1102)
Q Consensus 3 ~~~~~g~~~s~~~l~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~~~~i~~q~~~E 71 (1102)
-|-.+||.++|+.+.+|+|+... ....|.+|..|+-++|+..+..+. .++.+ +. +.|.+.+|+++|
T Consensus 36 ylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~~-l~F~Lq~q~lIE 112 (228)
T KOG2659|consen 36 YLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--RE-LFFHLQQLHLIE 112 (228)
T ss_pred HHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--hh-HHHHHHHHHHHH
Confidence 36689999999999999999982 678999999999999999998872 33333 22 789999999999
Q ss_pred HhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC--chhHHHHHHHHHHhhcccCccccccc
Q 001311 72 ALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKLIEANPLFRDKL 149 (1102)
Q Consensus 72 ll~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~i~~~~~~~~~~ 149 (1102)
|+..|..++|+.|+++++.|+...+++.++.|...+..--++ ......... ....|.++.+.++..|-...- ..
T Consensus 113 liR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~-~~~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~---~~ 188 (228)
T KOG2659|consen 113 LIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFE-LSQESPSAELLSQSLRQKVASEVNSAILASQE---HE 188 (228)
T ss_pred HHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcC-CcccCcHHHHHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence 999999999999999999999887888888777666443332 122121222 245588888888887744222 11
Q ss_pred CCCccchHHHHHHHHHHHHHH
Q 001311 150 QFPNLKNSRLRTLINQSLNWQ 170 (1102)
Q Consensus 150 ~~~~~p~~rL~~ll~q~~~~q 170 (1102)
. ..+|..|+...+..|
T Consensus 189 ~-----~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 189 S-----EPKLPFLLKLISWAQ 204 (228)
T ss_pred c-----cchHHHHHHHHHHHH
Confidence 1 347888885554444
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=9.7e-07 Score=87.89 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=138.3
Q ss_pred EEEecCCCeEEEEeCCeEEEEEcCCC--ceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311 812 FALSKNDSYVMSASGGKISLFNMMTF--KTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 812 l~~s~d~~~las~sdg~I~iwd~~~~--~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 886 (1102)
++.+.||+.||+..|..|.|=..++. ..+... +.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67789999999999998888776542 122222 22334568899999 999999999999999999875433 233
Q ss_pred cc-------ccccceeEEEecC------CCEEEEEcCCCcEEEEEcCCCcccc---eeeeecCCCCCCCCCCCcEEEEcc
Q 001311 887 KG-------HSKRITGLAFSHA------LNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 887 ~~-------h~~~V~~l~~s~d------~~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
.. -..+|.+|.|.+- ...|.....+|.++=|-+..+.... ........ + .+..|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~-~--yp~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS-H--YPHGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc-c--CCCceeEEEEcC
Confidence 21 2356777777542 1246666778888777664322111 11222221 1 125889999999
Q ss_pred CCcEEEEEe---CC---------eEEEEEcCCceEeee---------------------e-----cc-CCCCCCeeEEEE
Q 001311 951 DQIHFLVVH---ET---------QLAIFETTKLECVKQ---------------------W-----VP-RESSAPITHATF 991 (1102)
Q Consensus 951 dg~~l~~~~---d~---------~i~iwd~~~~~~~~~---------------------~-----~~-~~h~~~v~~l~~ 991 (1102)
..++|++++ +. .+..|.+-++..-.. . .. ......|..|.+
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 988888741 11 366676533221100 0 00 112567999999
Q ss_pred cCCCcEEEEEeCCCeEEEEEcCCceeEEEeCC
Q 001311 992 SCDSQLVYACFLDATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus 992 spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 1023 (1102)
||||+.||+...+|.|.+|++.+.++...+..
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999999999887763
No 288
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2.2e-06 Score=95.99 Aligned_cols=337 Identities=9% Similarity=0.071 Sum_probs=184.8
Q ss_pred eEEEEecCCCeEEEEEec----CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 350 MSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~----d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
+-..|+|.... +|+++. .|.|-|+- ++|+...... .. -.+++++|+|..-.||.
T Consensus 19 ti~SWHPsePl-fAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P---~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEPL-FAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YP---VHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCce-eEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cc---eehhhhccChHHHHHhh
Confidence 34567787774 666543 46787774 4555332111 11 13567999999999999
Q ss_pred EECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE--eecC--CCCeE
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGH--EAPVY 501 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~--~~~h--~~~v~ 501 (1102)
|-.-|.+.+|...+.+.- .....|..+|..+.||++|. .++|+..-|.|.+|...--..++. +..| ...++
T Consensus 77 gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt 151 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT 151 (1416)
T ss_pred ccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence 999999999998875422 23456999999999999999 899999999999998763222221 1112 22344
Q ss_pred EEeeeecCCcc------EEEEEeCCCeEE-EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 502 SVCPHHKENIQ------FIFSTALDGKIK-AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 502 ~v~~~~~~~~~------~l~s~s~dg~i~-~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
-+||--+.++. ..+..+++..+- .++++........ . -.-.|+|
T Consensus 152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~------------------~-----------ksgv~~g 202 (1416)
T KOG3617|consen 152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD------------------E-----------KSGVPKG 202 (1416)
T ss_pred EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc------------------c-----------ccCCCCC
Confidence 44443333311 123333333332 2222210000000 0 0112455
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc-CCccc---eeecccccc
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS-DGIRL---LRTFENLAY 650 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~---~~~~~~~~~ 650 (1102)
..++.++.+|+|+--|- .|++....+.... ..+-|.+....+++...+-++.++-+. +|... ...+.+...
T Consensus 203 ~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~----vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~G 277 (1416)
T KOG3617|consen 203 TEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE----VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLG 277 (1416)
T ss_pred cEEEEEcCCceEEEEcC-CCcEEEEEEccch----HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccC
Confidence 67888999999988874 5665555543321 234566655555555555444444332 22000 000000000
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311 651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 730 (1102)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 730 (1102)
. ....++.+...|.++ .
T Consensus 278 g-------------------------------------------------rqGgiA~sEssGvLr--------------~ 294 (1416)
T KOG3617|consen 278 G-------------------------------------------------RQGGIACSESSGVLR--------------K 294 (1416)
T ss_pred C-------------------------------------------------ccCcccccccccccc--------------C
Confidence 0 000122222222111 0
Q ss_pred ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311 731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810 (1102)
Q Consensus 731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~ 810 (1102)
-.--+......+.+++++..+..+..+...|.+.+|.-....+..+ .+...|.+.+... ..+.|+
T Consensus 295 ~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~------p~~d~w~l~~~~e---------~~g~I~ 359 (1416)
T KOG3617|consen 295 SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGD------PTIDVWTLNGKRE---------SLGKIS 359 (1416)
T ss_pred CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCC------CCcceEEecCchh---------hccceE
Confidence 0000122457899999999999999999999999997533322221 1344565544322 345688
Q ss_pred EEEEecCCCeEEEEe
Q 001311 811 CFALSKNDSYVMSAS 825 (1102)
Q Consensus 811 ~l~~s~d~~~las~s 825 (1102)
.+.|.|-...+++-+
T Consensus 360 ~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 360 LIRWGPIKSTAAVNT 374 (1416)
T ss_pred EEEeccccchhhhhh
Confidence 888888665555544
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.2e-06 Score=98.77 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=124.1
Q ss_pred CeeEEEEecCCCe-EEEEe-C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEE-EeCC--CcEEEEEeec
Q 001311 808 AVPCFALSKNDSY-VMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDD--SSIQIYNVRV 879 (1102)
Q Consensus 808 ~i~~l~~s~d~~~-las~s-d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~d--g~v~vwd~~~ 879 (1102)
......|+|||+. ++..+ + ..|+++|+.+++...... ..+......|+| ||+.|+. .+.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 6778999999985 66544 3 459999998877654433 455567788999 7765554 4334 4688888877
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcC-CC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 956 (1102)
++. ..+..+........|+|||+.|+-.+. .+ .|.+.|+.+++.... . ..+. ....|||||++|+
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t--~~g~-------~~~~~SPDG~~Ia 334 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--V--FHGK-------NNSSVSTYKNYIV 334 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--c--cCCC-------cCceECCCCCEEE
Confidence 763 445444443456789999998876653 33 577888887654211 1 1111 1248999999998
Q ss_pred EE-eC---------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC---eEEEEEcCCc
Q 001311 957 VV-HE---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANL 1015 (1102)
Q Consensus 957 ~~-~d---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg---~I~vwd~~~~ 1015 (1102)
.. .. ..|.+.|+.++.... +... .......|+|||+.|+..+.++ .+.+.+++..
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 73 22 368888998887543 3321 2233588999999887666442 3666676543
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.80 E-value=1.8e-06 Score=91.12 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=139.1
Q ss_pred CCeEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCC
Q 001311 826 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 903 (1102)
Q Consensus 826 dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 903 (1102)
+|+|..||..+++.+...... .....+..+ + ++..+++++.++.|+.||..+|+.+..... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999988776531 122222233 2 455666778999999999999998877764 23222222 22455
Q ss_pred EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCC
Q 001311 904 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 982 (1102)
Q Consensus 904 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h 982 (1102)
.++.++.|+.|..+|..+++..-.......... ..........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 666666888999999999876433112111110 111222333336666665 599999999999999877764221
Q ss_pred C--C------CeeEEEEcCCCcEEEEEeCCCe-EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 983 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 983 ~--~------~v~~l~~spd~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
. . .+..-.+..++ .++.++.++. +.+ |+.+++.+-+.. ..+ .. . .... ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 1 11222233345 6666777775 555 999999664222 111 11 1 1233 4677787
Q ss_pred EecCCcEEEEeccCCCcccc
Q 001311 1054 GLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus 1054 ~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
++.|+.|..||+.+++.+|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998875
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.4e-06 Score=84.85 Aligned_cols=242 Identities=13% Similarity=0.082 Sum_probs=153.8
Q ss_pred CCeEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 895 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1102)
..+||.|+ .|...+|...+.+.. +....|...|+-+.=.-+...-+..++.|.++++.++.-+.....+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34778776 799999999865543 2333344433322111112334566788889999988765433333222223788
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEe
Q 001311 896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 974 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~ 974 (1102)
+++++|++++++.+....|..|.++.............. ...-....|+.....+|++ .||.+.|||++.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-----~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-----SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-----CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 999999999999999999999999864322222111111 1233678899999999985 9999999999875433
Q ss_pred eee---ccCCCCCCeeEEEEcCCCc--EEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC
Q 001311 975 KQW---VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1049 (1102)
Q Consensus 975 ~~~---~~~~h~~~v~~l~~spd~~--~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~ 1049 (1102)
... ....|.+.+..+.|++-|. +|+..-.-+.+.|-|+.+++-...+.+....-..|....+. .-.|+. ++.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~ 315 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE 315 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence 221 1235899999999998664 34444456789999999999888777544443333333355 566665 334
Q ss_pred EEEEEecCCcEEEEeccCC
Q 001311 1050 EFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1050 ~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
-+.+.+.+ .+.-|++.+.
T Consensus 316 s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccch-hhheeecccc
Confidence 44443333 3455666443
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=7.6e-06 Score=93.13 Aligned_cols=310 Identities=10% Similarity=0.054 Sum_probs=170.9
Q ss_pred EEEEecCCCcEEEEeCCCCeeeEEeecCC--CCeE-----EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCC
Q 001311 469 CVITCGDDKTIKVWDATNGAKQYIFEGHE--APVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 541 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~--~~v~-----~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 541 (1102)
.++.++.++.+.-+|..+|+.+....-.. .... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 46777778899999999999887654221 0000 0000001122467788889999999999988877665432
Q ss_pred CeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCC---cCeEEEcCCC
Q 001311 542 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDG 618 (1102)
Q Consensus 542 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~ 618 (1102)
....+.. + .+..++.+..++.|+.+|..+|+.+..+........ ..+... .+
T Consensus 151 ~~~ssP~---------------------v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPV---------------------V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCE---------------------E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 2110000 0 023477778899999999999999888764321000 011111 23
Q ss_pred CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccc
Q 001311 619 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 698 (1102)
Q Consensus 619 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1102)
..++.++.+|.+..+|..++...-+ ...... .
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~---------------~-------------------------------- 237 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQP---------------T-------------------------------- 237 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhhe-eccccC---------------C--------------------------------
Confidence 4577778889999999888732211 100000 0
Q ss_pred cCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCc
Q 001311 699 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 778 (1102)
Q Consensus 699 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 778 (1102)
+ .. ..-+++++ ...++ + .+..++.++.++.+..+|..+++
T Consensus 238 ---~------~~-~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------ 277 (394)
T PRK11138 238 ---G------AT-EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------ 277 (394)
T ss_pred ---C------cc-chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence 0 00 00000000 00011 0 12345556667777666653221
Q ss_pred ccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEe
Q 001311 779 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH 856 (1102)
Q Consensus 779 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~s 856 (1102)
.+|....+. ...+.. ++..+..++ +|.+..+|..+++.+....... ....+.++.
T Consensus 278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 234322110 111222 334455554 8999999999988765433211 122223332
Q ss_pred cCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee-EEEecCCCEEEEEcCCCcEEEEEc
Q 001311 857 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 857 p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
+ .+|+.++.||.|++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 335 --~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 --N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 46677899999999999999988776543333332 222 2447888899999888764
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=2.6e-06 Score=96.19 Aligned_cols=157 Identities=9% Similarity=0.002 Sum_probs=98.6
Q ss_pred CCeeEEEEecCCCeEEEE-Eec--CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311 347 SSPMSMDFHPVQQTLLLV-GTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llas-g~~--d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 423 (1102)
+.+...+|||||+++++. ... +..|.++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 377889999999864443 332 3579999999887654 22344566778899999988
Q ss_pred EEE-ECC--CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCeeeEEeecCCCC
Q 001311 424 GVA-YSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 424 as~-~~d--~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
+.. +.+ ..|.++|+.+++..+ +..+........|+|||+.+++.+...+ ..|.+.|+.+|+..+.... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence 754 333 568888888876332 3334433445689999997444442222 2688889888776443321 111
Q ss_pred eEEEeeeecCCccEEEEEeCC---------CeEEEEEcCCCC
Q 001311 500 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 532 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~ 532 (1102)
...| +++|+.|+..+.. ..|.+.|+.++.
T Consensus 323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1255 5666777666543 256666766543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=1e-07 Score=98.46 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=107.9
Q ss_pred ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEc
Q 001311 893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFET 968 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~iwd~ 968 (1102)
...+..++++++||++..+....++++..... ...++...... ..-+.+.|..+.....++ ....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677888888888887777777765443 22222222211 133566666665555542 3445666666
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
..+.+...+ ||-+.++.++||||+++|+++..|..|||-.++.--.+..+ +-||..- |. .++--+ +
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf------clGH~eF-VS--~isl~~--~ 205 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF------CLGHKEF-VS--TISLTD--N 205 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh------ccccHhh-ee--eeeecc--C
Confidence 655554443 89999999999999999999999999999887765444333 2355333 55 455544 5
Q ss_pred CEEEEEecCCcEEEEeccCCC
Q 001311 1049 NEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1049 ~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+.|+++|.|++|++||+.++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 789999999999999999998
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.71 E-value=6.4e-08 Score=106.47 Aligned_cols=256 Identities=12% Similarity=0.174 Sum_probs=162.7
Q ss_pred CeeEEEEecCC--CeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEE
Q 001311 348 SPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 424 (1102)
Q Consensus 348 ~v~~v~~spdg--~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 424 (1102)
.|-.+.|||.- .+ -++......-+||++....... ..-.+.||...|+.+.|.| .-..||
T Consensus 69 ~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCce-eEEecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCccee
Confidence 45566676642 22 3444445667789986432221 1115789999999999999 567899
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCeEEE
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 503 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v~~v 503 (1102)
+++.|..|..||+.+... .+.....-...-..|+|+.-.. .+...+..+.|++||++.| .++..+++|...|+.+
T Consensus 132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 999999999999998653 3333434445667899998777 3666677789999999876 5678899999999998
Q ss_pred eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
.|..... ..+.+++.||+|++||.+......... .....+..-++.|-|.-. ++-....++.+..-.-
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~----------~~mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY----------CIMPMVGGNMVPQLRC 276 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee----------EeccccCCeeeeeccc
Confidence 8754333 368899999999999997654333221 122334444444444311 1111111121111222
Q ss_pred CCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcC----------CCCEEEEEECCCcEEEEEccC
Q 001311 583 DFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 583 dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
++....|+..+ .+.++++.+|.. .|....|-. ..-.|++-+.|.++++|-+.+
T Consensus 277 ~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 277 ENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 33344455543 356788887754 343333321 234799999999999998754
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=6.7e-06 Score=82.06 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=135.1
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEeecc--eeeeee---ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce
Q 001311 853 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 927 (1102)
Q Consensus 853 l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 927 (1102)
++.+. +|++||+- .|..|.|-..++. .++.+. +...-.-..++||||+.+||.+...|+|+++|+.+.+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888865 5777777655431 222222 22333456799999999999999999999999987543221
Q ss_pred eeeecCCCCCCCCCCCcEEEEccCC-------cEEEEEeCCeEEEEEcCCc-----eEeeeeccCC-CCCCeeEEEEcCC
Q 001311 928 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-SSAPITHATFSCD 994 (1102)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~~~~spdg-------~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~-h~~~v~~l~~spd 994 (1102)
...... .......|..+.|-.-- .+|+....|.++-|-+..+ +.-..+.... +...|.++.+.|.
T Consensus 81 ~p~~~~--~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSF--PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred Cccccc--CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 111111 11122466777776532 4566678888888876332 2333333323 3778999999999
Q ss_pred CcEEEEEeC----C-------CeEEEEEcCCceeEEEeCC---------------------CcccCCCCCCCcccceEEE
Q 001311 995 SQLVYACFL----D-------ATVCVFSAANLKLRCRINP---------------------SAYLPAGVSSSNVHPLVIA 1042 (1102)
Q Consensus 995 ~~~l~s~s~----D-------g~I~vwd~~~~~~~~~~~~---------------------~~~~~~gh~~~~v~~~~v~ 1042 (1102)
.++|++|+. | .-+..|.+-++........ ..+...+.....|. .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998877763 1 1377887755544322110 00111111122244 777
Q ss_pred ecCCCCCEEEEEecCCcEEEEeccCCC--cccccC
Q 001311 1043 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1075 (1102)
Q Consensus 1043 f~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~ 1075 (1102)
.+| ||..||+.+.+|.|.+|++.+-. +.|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 888 68999999999999999998766 666654
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=9e-06 Score=84.04 Aligned_cols=245 Identities=15% Similarity=0.152 Sum_probs=149.0
Q ss_pred eEEEEecCCCeEEEEEecCC-eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC
Q 001311 350 MSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 428 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 428 (1102)
-.++.+|+....++.+-.-| ...+||..+++...... .-....|.|| -.||+||++|.+.-.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence 46778886655677777666 47899999998876411 1222346677 689999999998643
Q ss_pred -----CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec----------------CCCcEEEEeCCCC
Q 001311 429 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG----------------DDKTIKVWDATNG 487 (1102)
Q Consensus 429 -----d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~----------------~d~~i~vWd~~~~ 487 (1102)
.|.|-|||... .++.+.++..|.-.-..+.+.|||+.++++-|+ .+-++.+-|..+|
T Consensus 71 d~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 47899999993 244555677777677889999999864444443 2335677777888
Q ss_pred eeeEE--e--ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC--CeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 488 AKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 488 ~~~~~--~--~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
+.+.. + .-|...|..+++. .+|.. +.+.. |.-.... .+.-+......+..+...++. ...-
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V-~~a~Q------~qg~~~~~~PLva~~~~g~~~~~~~~p~~~----~~~l 215 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVD--GDGTV-AFAMQ------YQGDPGDAPPLVALHRRGGALRLLPAPEEQ----WRRL 215 (305)
T ss_pred ceeeeeecCccccccceeeEEec--CCCcE-EEEEe------cCCCCCccCCeEEEEcCCCcceeccCChHH----HHhh
Confidence 88765 4 3377778888864 44433 33322 1111100 011111111111111111000 0011
Q ss_pred cCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 562 KRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
.+.+.+|+++.++.++++.+ ..+.+.+||..+++.+...... .+..++..+++ ++++.+ .|.+..
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEEE
Confidence 24667788888887776655 6889999999999988877643 45667776666 454443 455433
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.68 E-value=3e-05 Score=88.21 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCceeeeecCCCCC-----eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc----c---cc
Q 001311 826 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----K---RI 893 (1102)
Q Consensus 826 dg~I~iwd~~~~~~~~~~~~~~~~-----i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~----~---~V 893 (1102)
++.|.-+|.++++.+......... ..+-... ++ .++.++.+|.+..+|..+|+.+....... . ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 666777777777766555422110 0111122 23 46667788999999998887665432110 0 01
Q ss_pred eeEEEec--CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001311 894 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 971 (1102)
Q Consensus 894 ~~l~~s~--d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~ 971 (1102)
..+.-+| .+..++.++.++.+..+|..+++..-.. ..+ ....+.. .++..++...++.+..+|..+|
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EYG------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cCC------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 2456767778999999999988643211 111 1111222 2344444468899999999999
Q ss_pred eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311 972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus 972 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.+. ..+ . +.. +-... +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~--~~s-~P~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--G--FLS-EPVVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--c--cee-CCEEE---CCEE
Confidence 8754332111 111222222 255678889999999999999999887762 111 0 110 11111 3578
Q ss_pred EEEecCCcEEEEec
Q 001311 1052 ALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1052 ~s~~~Dg~v~vW~~ 1065 (1102)
+.++.||.|+.++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88899999998875
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=4.4e-06 Score=81.53 Aligned_cols=232 Identities=11% Similarity=0.032 Sum_probs=151.2
Q ss_pred CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCc
Q 001311 617 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 696 (1102)
Q Consensus 617 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1102)
...+|+.|+..|...+|...+....+.....+...+... .
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~--------~-------------------------------- 122 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV--------K-------------------------------- 122 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhh--------h--------------------------------
Confidence 456899999999999999887644444433332221100 0
Q ss_pred cccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc--ceEEEEEccCCceEEEeecCceEEeeeccccccC
Q 001311 697 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT--KISRLIFTNSGNAILALASNAIHLLWKWQRTERN 774 (1102)
Q Consensus 697 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 774 (1102)
..-.....+..++.|.++++.++......... |.. .+.++.+++|++++++.+....|..|.++....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se- 192 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE- 192 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCccccee---------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc-
Confidence 00011234556677788888887754332222 222 378899999999999999999999988754221
Q ss_pred CCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceee-----eecCCCC
Q 001311 775 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPP 848 (1102)
Q Consensus 775 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~-----~~~~~~~ 848 (1102)
......+.. ....-.+..|+.....+|++. ||++.|||++...... +-..|.+
T Consensus 193 -------------------y~~~~~~a~--t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 193 -------------------YIENIYEAP--TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred -------------------eeeeeEecc--cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence 111111111 344456788999999999999 9999999998654332 2345888
Q ss_pred CeeEEEEecCCC--cEEEEEeCCCcEEEEEeecceeeeeec-------ccc-ccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 849 AATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLK-------GHS-KRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 849 ~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~-------~h~-~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
.+..+.|++ .| .+|...-.-+.+.|.|+++++-.+.+. .|. ..|..-.|+.++.-+.+.+++. +.-|+
T Consensus 252 a~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~n 329 (344)
T KOG4532|consen 252 AFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYN 329 (344)
T ss_pred ceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheee
Confidence 999999997 44 355555556789999999876444332 233 3388888888887777666654 56677
Q ss_pred cCC
Q 001311 919 SDG 921 (1102)
Q Consensus 919 ~~~ 921 (1102)
+.+
T Consensus 330 i~s 332 (344)
T KOG4532|consen 330 ILS 332 (344)
T ss_pred ccc
Confidence 665
No 300
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.66 E-value=0.0025 Score=74.39 Aligned_cols=560 Identities=10% Similarity=0.089 Sum_probs=275.8
Q ss_pred EEccCCCeEEEEECCCeEEEEEcc-CCceeee---EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYH-GGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 490 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~-~~~~~~~---~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~ 490 (1102)
....+|.+...|..+|.+...-+. +++.... ....-+...-..|+..-++| ++..|+.-|.=.+-.+.+....
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888887766555 4433221 12233555566778887777 5888887766566655543222
Q ss_pred -------EEeecCCCCeEEEeeeecC--CccEEEEEe---CCCeEEEEEcCCC------------CCeeeecC----CCC
Q 001311 491 -------YIFEGHEAPVYSVCPHHKE--NIQFIFSTA---LDGKIKAWLYDNL------------GSRVDYEA----PGR 542 (1102)
Q Consensus 491 -------~~~~~h~~~v~~v~~~~~~--~~~~l~s~s---~dg~i~~wd~~~~------------~~~~~~~~----~~~ 542 (1102)
.++. .-++|..++..... .+..+++|+ .||++|+..-.-+ +..+.++. ...
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d 419 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYD 419 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCC
Confidence 2333 45688888765433 334566654 3788888642211 11111110 000
Q ss_pred e---------eeEEEEccC--------------------------------Cceeeecc-------ccCceeEEEEcCCC
Q 001311 543 W---------CTTMAYSAD--------------------------------GTRTYQGF-------RKRSLGVVQFDTTK 574 (1102)
Q Consensus 543 ~---------v~~~~~s~~--------------------------------~~~~~~~~-------~~~~i~~~~~~~~~ 574 (1102)
. -..+.++++ +-+++.+. ....+++...+-+.
T Consensus 420 ~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~ 499 (1096)
T KOG1897|consen 420 NYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANA 499 (1096)
T ss_pred cEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecc
Confidence 0 000111111 00111111 00112222222222
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC--C----CEEEEEECCCcEEEEEccCCccceeecccc
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRTFENL 648 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 648 (1102)
..++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.......+....-
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l- 577 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL- 577 (1096)
T ss_pred eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-
Confidence 345555555555555555444 222222233346888989873 2 27888877766655433222111111100
Q ss_pred cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC--CCC
Q 001311 649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS--EPN 726 (1102)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~--~~~ 726 (1102)
.... -| ....... +..+..+|.++..||.+.-|.+.... ...
T Consensus 578 ~~~~-----------iP-------------------RSIl~~~------~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd 621 (1096)
T KOG1897|consen 578 SGEI-----------IP-------------------RSILLTT------FEGDIHYLLVALGDGALLYFVLDINTGQLSD 621 (1096)
T ss_pred CCCc-----------cc-------------------hheeeEE------eeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence 0000 00 0000011 11236788899999988766555322 111
Q ss_pred ccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311 727 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 806 (1102)
Q Consensus 727 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 806 (1102)
..+. .-...++.--.|+..++.-+-+.+|.-..+|.- ++++....+.. ..-
T Consensus 622 ~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-----------------------n~kLv~spls~-kev 672 (1096)
T KOG1897|consen 622 RKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-----------------------NGKLVYSPLSL-KEV 672 (1096)
T ss_pred cccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-----------------------CCcEEEeccch-HHh
Confidence 1110 113345555566666555555555544444431 11111111100 000
Q ss_pred CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEeC-----------C---C
Q 001311 807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D---S 870 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~-----------d---g 870 (1102)
..+..+.-+.-...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+. . .
T Consensus 673 ~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s 750 (1096)
T KOG1897|consen 673 NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVS 750 (1096)
T ss_pred hhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEE
Confidence 001111111223467777777777776654332 23333 223456666665 3444444331 1 1
Q ss_pred cEEEEEeecceeeeee--ccc--cccceeEEEecC-CCEEEEEcC----------CCcEEEEEcCCCcccceeeeecCCC
Q 001311 871 SIQIYNVRVDEVKSKL--KGH--SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTG 935 (1102)
Q Consensus 871 ~v~vwd~~~~~~~~~l--~~h--~~~V~~l~~s~d-~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~ 935 (1102)
.++++|-.+.+.+... ... .-.|.++.|..| +.++++|.. .|.|.|+.+...............|
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4566665554433322 111 123445558877 778887753 3677788776622211111111111
Q ss_pred CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc--C
Q 001311 936 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA--A 1013 (1102)
Q Consensus 936 ~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~--~ 1013 (1102)
. ..+..--...++++-+..|++|++.+.+.++.-. .|..++..+.+.-.|..++.|..=+.|.+-.. .
T Consensus 831 ------a--v~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 831 ------A--VYALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred ------c--eeehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 1 2222232334555677899999999986665533 66888999999999999999988887766554 4
Q ss_pred CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1014 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1014 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
.|.+.-.- ..+.| -|.+++.+-. ++..+-+..+|.+++-...+.
T Consensus 901 eg~f~evA--rD~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 901 EGNFEEVA--RDYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred CCceEEee--hhhCc-------cceeeEEEec--CceEEeecccccEEEEEecCC
Confidence 43343222 22333 2333666664 456666778898888876543
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=3.3e-05 Score=81.63 Aligned_cols=217 Identities=15% Similarity=0.098 Sum_probs=137.3
Q ss_pred eEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311 810 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 810 ~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~dg~v~vwd~~~~~~~~~l 886 (1102)
.+++|.+ ++.++++-. .+.|..|+..++.... +.... ...+++. + ++++++ +.. +.+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEc-CceEEEecCCCcEEEEe
Confidence 3578887 555555554 7899999998866533 22122 7788888 5 665555 444 45566698887544333
Q ss_pred cc-----ccccceeEEEecCCCEEEEEcCC--------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311 887 KG-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 953 (1102)
Q Consensus 887 ~~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 953 (1102)
.. .....+.+++.++|++.++.... |.|..++.. ++. ....... .....++|+||++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGK 146 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSS
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcch
Confidence 22 34567889999999988876644 446666665 232 1111111 1347899999999
Q ss_pred EEEEE--eCCeEEEEEcCCceE----eeee-ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcc
Q 001311 954 HFLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026 (1102)
Q Consensus 954 ~l~~~--~d~~i~iwd~~~~~~----~~~~-~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1026 (1102)
.|.++ ..+.|..|++..... .+.+ ......+..-.+++..+|++.++....+.|.+++.+ |+++..+.
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~---- 221 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE---- 221 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----
Confidence 88764 677899888863221 1222 111212358899999999988888889999999987 99988887
Q ss_pred cCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 1027 LPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 1027 ~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
++. -.+.+++|...|.+.|..
T Consensus 222 ~p~------~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 222 LPV------PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -SS------SSEEEEEEESTTSSEEEE
T ss_pred CCC------CCEEEEEEECCCCCEEEE
Confidence 441 135589996434444443
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=5.3e-07 Score=89.30 Aligned_cols=227 Identities=15% Similarity=0.221 Sum_probs=142.0
Q ss_pred CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc--eeeeEEEeeccc------------cCEEEEEEcCCCCeeEEE
Q 001311 406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHV------------GGVNDIAFSHPNKQLCVI 471 (1102)
Q Consensus 406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~d~~~~~l~ 471 (1102)
...+-|+++.|...|.|||+|...|.|.+|.-+... ..+-..++++|. ..|..|.|..++..-.++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345689999999999999999999999999765432 122222355564 358899998887654677
Q ss_pred EecCCCcEEEEeCCCCee-------------------------------------e-----EEe-ecCCCCeEEEeeeec
Q 001311 472 TCGDDKTIKVWDATNGAK-------------------------------------Q-----YIF-EGHEAPVYSVCPHHK 508 (1102)
Q Consensus 472 s~~~d~~i~vWd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~v~~~~~ 508 (1102)
..+.|++|++|.+..... + +.. ..|.-.|+++.|.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-- 181 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-- 181 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence 778899999998764310 0 011 2466667777764
Q ss_pred CCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEE
Q 001311 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIK 587 (1102)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~ 587 (1102)
.+...+++ +.|-.|.+|+++-....+.+ +.+-|..- . .-...|++..|+|.. +.+.-.+..|.|+
T Consensus 182 sD~et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nm---e-eLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 182 SDKETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNM---E-ELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred Cchheeee-ccceeeeeccccccCCceEE---------EeccCccH---H-HHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 34345554 45788999988754433221 11111100 0 000123344455543 3455677899999
Q ss_pred EEECCCcceE------E--EEcCC------CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311 588 FWDMDSVQLL------T--SIDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649 (1102)
Q Consensus 588 iwd~~~~~~~------~--~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 649 (1102)
+-|++...+. . .+.+. +-...|..+.|+++|+++++-+. -+++|||++..+.++.++.-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 9999743211 1 11111 11245778999999999997654 6899999988877777665443
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=5.7e-07 Score=87.24 Aligned_cols=150 Identities=16% Similarity=0.215 Sum_probs=97.9
Q ss_pred ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--
Q 001311 748 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-- 825 (1102)
Q Consensus 748 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-- 825 (1102)
+--++.+++++.||.+.+++.+. .+....+. .. ....-.+.++...++++.++.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i---------------~~--------~~~~~as~~~~~~~~~i~s~~~g 153 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDK-DLALMSRI---------------PS--------IHSGSASRKICRHGNSILSGGCG 153 (319)
T ss_pred cccCCceEecCCCceEEEEechH-HHhhhhhc---------------cc--------ccccccccceeecccEEecCCcc
Confidence 33456689999999999887633 11100000 00 011112223334455555543
Q ss_pred ----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeeeeccccccceeEEEec
Q 001311 826 ----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSH 900 (1102)
Q Consensus 826 ----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~ 900 (1102)
-+..+.|+++..+....-......|++++-+|.-.+++++|++||.+.+||.+... ....+..|..+|+.+-|+|
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred eEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence 24456666553322221111233499999999667889999999999999998864 3345688999999999998
Q ss_pred C-CCEEEEEcCCCcEEEEEcCC
Q 001311 901 A-LNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 901 d-~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
. +..|++++.||.+.-||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 5 68899999999999999876
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=0.00011 Score=77.50 Aligned_cols=226 Identities=19% Similarity=0.198 Sum_probs=143.3
Q ss_pred eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc-cCCCeEEEEEC
Q 001311 350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 428 (1102)
Q Consensus 350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 428 (1102)
.+++|.+....|+.+.-..+.|..|+..+++.... ... ....+++. +++ .|+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g-~l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDG-RLYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTS-EEEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCC-EEEEEEc
Confidence 46789985555788887889999999998866431 111 26777888 565 4555555
Q ss_pred CCeEEEEEccCCceeeeEEEee--c-cccCEEEEEEcCCCCeeEEEEecCC--------CcEEEEeCCCCeeeEEeecCC
Q 001311 429 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 429 d~~v~vwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~d~~~~~l~s~~~d--------~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
++ +.++|..+++. ..+.... . .....+.+++.++|. +.++.... +.|..++.. ++...... ..
T Consensus 60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 55 55559988854 3333332 1 345788999999999 56665433 457777766 55444443 35
Q ss_pred CCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc--CceeEEEEcCCC
Q 001311 498 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK--RSLGVVQFDTTK 574 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~--~~i~~~~~~~~~ 574 (1102)
...+.++|+ ++++.| ++-+..+.|..++++.......-. +.+..... +....++++.+|
T Consensus 134 ~~pNGi~~s--~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 134 GFPNGIAFS--PDGKTLYVADSFNGRIWRFDLDADGGELSNR----------------RVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp SSEEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTCCEEEE----------------EEEEE-SSSSCEEEEEEEBTTS
T ss_pred ccccceEEC--CcchheeecccccceeEEEeccccccceeee----------------eeEEEcCCCCcCCCcceEcCCC
Confidence 567889985 445555 566778889888887543311000 11100000 134557777777
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEE-cCCCCEEEEEE
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVST 625 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~ 625 (1102)
+..++....+.|.++|.+ |+.+..+..... .+++++| .++.+.|++.+
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence 777777789999999987 888888876522 6889999 46777777654
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=2.2e-05 Score=81.18 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=140.0
Q ss_pred eeEEEEec-CCCeEEEEe-CC-eEEEEEcCCCceeeeecCCCCCe--eEEEEecCCCcEEEEEeC-----CCcEEEEEee
Q 001311 809 VPCFALSK-NDSYVMSAS-GG-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGMD-----DSSIQIYNVR 878 (1102)
Q Consensus 809 i~~l~~s~-d~~~las~s-dg-~I~iwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~~-----dg~v~vwd~~ 878 (1102)
...++.+| ....++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 45678888 555666666 34 58999999999888776554432 2468999 8998887643 4799999998
Q ss_pred -cceeeeeeccccccceeEEEecCCCEEEEEcC------------------CCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311 879 -VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPT 939 (1102)
Q Consensus 879 -~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 939 (1102)
+.+.+.++..|.-.--.|.+.|||+.|+.+-. +-.+..-|..+|+......+.. .-+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~-- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ-- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc--
Confidence 66777888776555566889999988877632 1234555566665433322211 1122
Q ss_pred CCCCcEEEEccCCcEEEEE-eCC-------eEEEEEcCCceEeeeeccC-----CCCCCeeEEEEcCCCcEEEEEe-CCC
Q 001311 940 AQSDTRVQFHQDQIHFLVV-HET-------QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACF-LDA 1005 (1102)
Q Consensus 940 ~~~v~~~~~spdg~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s-~Dg 1005 (1102)
.++..+++.++|..++.. ..+ -|.+++.. +.+..+... .-...|-+|++++++.++++.| .-+
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 378999999999988774 222 24444433 222222211 1257899999999998876555 567
Q ss_pred eEEEEEcCCceeEEEeC
Q 001311 1006 TVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 1006 ~I~vwd~~~~~~~~~~~ 1022 (1102)
.+.+||..+++++....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 89999999999997766
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2.2e-07 Score=93.60 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=120.3
Q ss_pred EEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce
Q 001311 363 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE 442 (1102)
Q Consensus 363 asg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~ 442 (1102)
++.+.+-.|-+-|++||-... +. -.+.|.++.|...+.++..|+.+|.|.+.|+..+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred ecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence 444556788999999885542 22 567899999999999999999999999999986511
Q ss_pred --eeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCee---eEEeecCCCCeEEEeeeecCCccEEEE
Q 001311 443 --VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPHHKENIQFIFS 516 (1102)
Q Consensus 443 --~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s 516 (1102)
..+.. ---|...|+++.... ++. +|++.+.+|.|++||++.-++ +.++.||-..-.-+-++..+....+++
T Consensus 287 G~~~~a~-rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 287 GNGWCAQ-RLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred CCCcceE-EEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE
Confidence 11111 224889999998877 455 799999999999999998777 899999977665565666666678999
Q ss_pred EeCCCeEEEEEcCCCCCeeeecCCC
Q 001311 517 TALDGKIKAWLYDNLGSRVDYEAPG 541 (1102)
Q Consensus 517 ~s~dg~i~~wd~~~~~~~~~~~~~~ 541 (1102)
++.|...|+|.++.+..+.+++.+.
T Consensus 364 ~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccCeeEEEEEecccCceeeccCCCC
Confidence 9999999999999887776665543
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=7.6e-06 Score=91.88 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=86.3
Q ss_pred eEEEEEccCCCeEEEEEC----CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 411 VNRVIWSPDGSLFGVAYS----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 411 V~~l~~spdg~~las~~~----d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
-+-.+|+|...++|+++- .|.|.||- ++|+.-+. .+..- .+++++|.|..- +|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 344679999999998864 47788874 34443221 12222 356799999876 788888889999999887
Q ss_pred CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe
Q 001311 487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~ 534 (1102)
.+.-.....|..+|..+.|+ ++|..++++..-|.|.+|..+..+..
T Consensus 91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeecccc
Confidence 77766777899999999985 56679999999999999988754433
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.58 E-value=5.9e-07 Score=87.11 Aligned_cols=210 Identities=12% Similarity=0.156 Sum_probs=125.5
Q ss_pred eeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC
Q 001311 349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 428 (1102)
Q Consensus 349 v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 428 (1102)
|+.+.|+-+- +|+++..++.+......++.+... |+-..+.. +...+..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6667676654 588888888888877766555432 21111111 11123355555455555556888999999
Q ss_pred CCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecC-----CCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 429 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGD-----DKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 429 d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~-----d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
||.+.+++.+.-..+. .... .|.+ -.+.+....+. .+.+++- -+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1211 12233333444 3333321 224556665543332221222334888
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
+|-++... +.+++|+.||.+-+||.+...... .+..|...+..+.|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 88877654 688999999999999999864332 3455666666666666543 5699999
Q ss_pred CCCeEEEEECCC
Q 001311 582 DDFSIKFWDMDS 593 (1102)
Q Consensus 582 ~dg~i~iwd~~~ 593 (1102)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999864
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00033 Score=68.54 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=98.2
Q ss_pred EEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec
Q 001311 459 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 538 (1102)
Q Consensus 459 v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1102)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -...|.+-+.. -+ ++++.|+..|.+++-+..++.+...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeee
Confidence 344456665 78889999999999999998876432 23334433322 12 579999999999999999987776554
Q ss_pred CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311 539 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 618 (1102)
Q Consensus 539 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 618 (1102)
..+..- .....++++..+..++.|+..+..|..+..++...+..+. ...+-++.|-.
T Consensus 91 ~~~~vk---------------------~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILETVK---------------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhhhc---------------------cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 332211 1123455667899999999999999999999998776554 23345566633
Q ss_pred CEEEEEECCCcEEEEE
Q 001311 619 CLLAVSTNDNGIKILA 634 (1102)
Q Consensus 619 ~~l~~~~~dg~i~iwd 634 (1102)
..|.++...|.+.--.
T Consensus 148 ~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAVT 163 (354)
T ss_pred ceEEEEeccceEEEEc
Confidence 3344444455554433
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.55 E-value=7.2e-07 Score=88.43 Aligned_cols=119 Identities=15% Similarity=0.265 Sum_probs=89.3
Q ss_pred CCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc---eeeeecCCCC-----CeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 804 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMATFMPPPP-----AATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~---~~~~~~~~~~-----~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
.|...|.++.+..|.+.++++.|=.|.+|++.-.. .+..+++|.- -|++..|+|...+.+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47778999999999999999999999999986322 2333455542 488999999778888889999999999
Q ss_pred Eeeccee------ee--e--------eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311 876 NVRVDEV------KS--K--------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 923 (1102)
Q Consensus 876 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 923 (1102)
|++...+ +. . +.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9973211 00 1 1122356888999999999987654 469999987643
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=0.00012 Score=76.67 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=128.7
Q ss_pred EEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee-cceeeee-
Q 001311 811 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK- 885 (1102)
Q Consensus 811 ~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~~- 885 (1102)
.++++.||+++.+.. ...|.|.|+...+.+.++... .+..+- |..++-+.+-|.||.+....+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 356777888777764 467999999998888777522 222222 3234457777889999999887 3554322
Q ss_pred ---eccccccc-eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC----CCCCCCCCcEEEEccCCcEEEE
Q 001311 886 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 886 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
|..-.+++ ..-+++.++..++-.+.+|.|+--|+................ ..-.++.-..+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 11112222 233455555566667888988888887765433333332210 0111234466889887766665
Q ss_pred E----eCC-------eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEE-eCCCeEEEEEcCCceeEEEeC
Q 001311 958 V----HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYAC-FLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 958 ~----~d~-------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~-s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
- .++ .|.++|+.+++.+..+.. ..++.+|.++.|.+ +|++. ..++.+.|||..+|+++.+++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 688999999999998875 34688999999887 55444 457999999999999999887
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.52 E-value=2.4e-05 Score=82.41 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=137.2
Q ss_pred CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEE
Q 001311 368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447 (1102)
Q Consensus 368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~ 447 (1102)
+|+|..||..+|+.+-...+. .+. ....+. ..+++.++++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~-~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGI-GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSC-SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCC-CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 689999999999988753221 011 122211 3346778888899999999999999866533
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCC---eEEEeeeecCCccEEEEEeCCCeE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAP---VYSVCPHHKENIQFIFSTALDGKI 523 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~---v~~v~~~~~~~~~~l~s~s~dg~i 523 (1102)
.+. +.+.......++. ++.++.++.|+.+|..+|+.+... ...... ......... +..++.+..++.|
T Consensus 63 ~~~---~~~~~~~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 DLP---GPISGAPVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp ECS---SCGGSGEEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred ecc---ccccceeeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 222 2211112223443 555557789999999999999884 432111 111121112 4678888889999
Q ss_pred EEEEcCCCCCeeeecCCCCee-eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311 524 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
..+|.++++.+.......... ..+.... .....+.+. ++ .++.++.++.+..+|+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFS-----------DINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEET-----------TEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeec-----------ccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988877665533211 0000000 001111122 23 57777777754444999998665333
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311 603 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 603 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
.. .+.. ....++..|++++.++.|..||..+++.
T Consensus 201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 21 1222 2456788888888999999999999843
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.6e-06 Score=86.15 Aligned_cols=215 Identities=12% Similarity=0.094 Sum_probs=142.3
Q ss_pred CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeC
Q 001311 406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA 484 (1102)
Q Consensus 406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~ 484 (1102)
.|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+-|+. ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 477777776554 467999999999999998654222333334778999999999999998 7888777 999999999
Q ss_pred CCCeeeEEeec--CCCCeEEEeeeecCC-c--cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 485 TNGAKQYIFEG--HEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 485 ~~~~~~~~~~~--h~~~v~~v~~~~~~~-~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
.+-..+.-++- -.+.+ +|..+++ - .+-++.-.++.+.++|-....+.. ..+.+
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-------------------~~fkk 141 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-------------------GYFKK 141 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-------------------ceecc
Confidence 87655433321 11222 2222221 1 233344457889999876544322 11222
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC------cceEEEEc-------CCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
.+..++.++.+.+.+..+++....|.|.-|.... .+....++ .........++.|+|++..+.+-..
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 2333455555555556788888899999999873 11111111 1112234678999999999999999
Q ss_pred CCcEEEEEccCCccceeecc
Q 001311 627 DNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 627 dg~i~iwd~~~~~~~~~~~~ 646 (1102)
|..|++++..++ +.++.+.
T Consensus 222 DrkVR~F~~KtG-klvqeiD 240 (558)
T KOG0882|consen 222 DRKVRGFVFKTG-KLVQEID 240 (558)
T ss_pred ccEEEEEEeccc-hhhhhhh
Confidence 999999999998 6665554
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=6.5e-07 Score=90.33 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=111.8
Q ss_pred eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-----eeeeeeccccccce
Q 001311 820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLKGHSKRIT 894 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~~h~~~V~ 894 (1102)
.+++|.+-.|-+-|++++... .|. ..+.|.++.|.. .++++..|+.+|.|.++|++.+ .+...+. |...|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred eecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 345556888999999886543 333 567799999997 7889999999999999999864 3444443 888999
Q ss_pred eEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceE
Q 001311 895 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 973 (1102)
Q Consensus 895 ~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~ 973 (1102)
++..-. ++++|++.+.+|+|++||....+... -+...+||..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN----------------------------------- 345 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVN----------------------------------- 345 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccc-----------------------------------
Confidence 988766 78899999999999999987633210 1122222211
Q ss_pred eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCC
Q 001311 974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus 974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 1023 (1102)
...-.-+-+.+....++++++|...|||.++.|.+++++..
T Consensus 346 ---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 346 ---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 11122223456677888899999999999999999999883
No 315
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.50 E-value=4.2e-07 Score=86.68 Aligned_cols=133 Identities=23% Similarity=0.256 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccc-cccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001311 26 MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEIT 104 (1102)
Q Consensus 26 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~ 104 (1102)
...++++|++|+++.|+..+.... .+- ..... +.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~-~~~~~-L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELL-KRNSS-LEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHH-hcCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 678999999999999999998752 111 11122 889999999999999999999999999988775444678899999
Q ss_pred HHhccccccc--ccccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccc-hHHHHHHHHHHHHHH
Q 001311 105 QLLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 170 (1102)
Q Consensus 105 ~ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~q 170 (1102)
.||.+....+ ...+..+- ....|.+|.+.+.+.+-...- +| ...|+.++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 9998876654 22222222 236689999999987755322 33 357888888876543
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.4e-06 Score=90.94 Aligned_cols=213 Identities=13% Similarity=0.080 Sum_probs=152.8
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCC
Q 001311 846 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 921 (1102)
Q Consensus 846 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~ 921 (1102)
|...|+.+.... .+++.+++-||.++.|.-.- -+.+..+..|-+.|.+++.+.|+.++.|.+. |..++++|++.
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 667777777664 67999999999999997542 2445667889999999999999999999877 99999999987
Q ss_pred CcccceeeeecCCCCCCCCCCCcEEEEccCC--cEEEEE--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcE
Q 001311 922 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 997 (1102)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~ 997 (1102)
-.......+..+.+ -..+..++.. ..++++ .++.+.++|-..+.+.......-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 54432222222221 1122223321 244443 788999999887665444444578999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC------ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 998 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 998 l~s~s~Dg~I~vwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+++....|.|.-|..+. +++...++...++-.- -...-.+.++.|+| ++..+.+-+.|..|+++++.+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999873 2233233322222211 11224466899999 68999999999999999999997
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=0.00011 Score=83.16 Aligned_cols=182 Identities=12% Similarity=0.047 Sum_probs=117.2
Q ss_pred EecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---C-cEEEEEeecceeeeeec
Q 001311 814 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 814 ~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~~~~~~l~ 887 (1102)
+++||+.+...+ .+.+.+.|.++.+...++.-. +....+++++ +++++++.+.+ | ++..-+......+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456777665444 577889999988777665532 2456789999 88888777532 2 22222221111111111
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcCC----CcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCC
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG----WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET 961 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~ 961 (1102)
- ..+ -++.++|++... .+++|.+.|..+ +.. ....++.+ .....+.+||||++++++ .+.
T Consensus 278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~---v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA---LTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcc---eEEEEECC-----CCccceEECCCCCEEEEeCCCCC
Confidence 0 000 133457877665 367799999887 211 12222223 245899999999999994 678
Q ss_pred eEEEEEcCCceE------------eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 962 QLAIFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 962 ~i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
+|.|+|+.+.+. +..... .......+|.++|....|-..|..|..||+.+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999988653 333322 34566789999999888899999999999987
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.2e-07 Score=104.30 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=144.9
Q ss_pred CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC--cE
Q 001311 837 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL 914 (1102)
Q Consensus 837 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i 914 (1102)
.+..+++..|....+|++|+. +.++|++|+..|.|++|++.+|.......+|.++|+-+.-+.||..+.+.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 899999999999999999999999999999999999999999998877665443 46
Q ss_pred EEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccC--CCCCCeeEEEE
Q 001311 915 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF 991 (1102)
Q Consensus 915 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~ 991 (1102)
.+|++...-. ....+ ..-.++.|+.....-+.+ ......+||+.|+....++... +....-++..|
T Consensus 1170 aLW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 7999876211 11111 244678898876655555 4457889999999877764321 12333477889
Q ss_pred cCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 992 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 992 spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
||+.++++ .|| .+||+...+.+.+|.....-. .=.|+|. |..++.-+ .|||+.+-.
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccCC-CceEEeec-----hhhhhHHHH
Confidence 99999887 566 579999888877766222111 2347784 66666655 578876654
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00052 Score=81.58 Aligned_cols=275 Identities=14% Similarity=0.133 Sum_probs=150.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
..|.++.|..+.+.++.+..+|.|.+-|..+......-... .+|.+++|+||+.+++..+..+++.+-.-. - .++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-F-EPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cch
Confidence 46777788888888999999999999988776544333222 358999999999999999988887765421 1 111
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
....-+.+.. .....+..+....-..+....+
T Consensus 144 ~E~~L~~d~~------------------------------------------------~~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 144 AEKPLDADDE------------------------------------------------RKSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred hccccccccc------------------------------------------------cccccceecccccceeeecchh
Confidence 1100000000 0011111111111111111111
Q ss_pred CCCCcccccc---CCCcccccceEEEEEccCCceEEEee----cC-ceEEeeeccccccCCCCcccccccceeccCCCcc
Q 001311 723 SEPNQCRSLR---LPENLRATKISRLIFTNSGNAILALA----SN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 794 (1102)
Q Consensus 723 ~~~~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~----~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 794 (1102)
......+... .+.....+.=..+.|--||.++++.. .+ +.++|||-. |.
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~ 232 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA 232 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence 1000000000 00001223345689999999888733 23 788888753 11
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCeEEEEe----CCeEEEEEcCCCc---eeeeecCCCCCeeEEEEecCCCcEEEE--
Q 001311 795 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAI-- 865 (1102)
Q Consensus 795 ~~~~~~~~~~~~~~i~~l~~s~d~~~las~s----dg~I~iwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~las-- 865 (1102)
+-.... ...+--.+++|-|.|..+++.. |+.|.+|.-+..+ ..-.+.....+|..++|+. ++.+||+
T Consensus 233 Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~ 308 (1265)
T KOG1920|consen 233 LNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT 308 (1265)
T ss_pred hhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence 111000 0223345789999999999863 5679999865322 2222333344599999999 8999998
Q ss_pred -EeCCCcEEEEEeecce--eeeeeccccccceeEEEecCC-CEEEEEcCCCcEEEEEc
Q 001311 866 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 866 -g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~ 919 (1102)
......|++|-+.+.. +.+.+.-..... +.|+|-. ..|..-..+|...++++
T Consensus 309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 5555569999987742 233333222222 6676642 22333335555544443
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=1.6e-05 Score=89.78 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=138.4
Q ss_pred cCCCeEEEEe--CCeEEEEEcCCCceeeeecC------C---------CCCeeE-----EEEecCCCcEEEE-EeCCCcE
Q 001311 816 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAATF-----LAFHPQDNNIIAI-GMDDSSI 872 (1102)
Q Consensus 816 ~d~~~las~s--dg~I~iwd~~~~~~~~~~~~------~---------~~~i~~-----l~~sp~d~~~las-g~~dg~v 872 (1102)
.||+|+..-. +..|...++...++-+.+.- | +..|.+ +=++| ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 5888888876 45566666665554333221 1 111211 22445 5554432 2334677
Q ss_pred EEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCc--EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 873 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
.+.|..+.+...++.-- +.-..+++++||+++++.+.+.. ..+-.+...+.......... ..-.+.+
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence 77888777666655432 23456789999999988863221 11122222111100000000 0113455
Q ss_pred CCcEEEEEeCCeEEEEEcCC-----ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCcee-------
Q 001311 951 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 1017 (1102)
Q Consensus 951 dg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~------- 1017 (1102)
+|++..+ .++.|.+.|..+ .+.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 7887666 467899999998 355555443 56889999999999987655 588999999998663
Q ss_pred -----EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1018 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1018 -----~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+.+++ + | ..|+..+|.+ +|+...|..-|..|-.|++.+
T Consensus 363 ~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 44444 2 2 4477899988 588999999999999999987
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=6.8e-05 Score=88.73 Aligned_cols=275 Identities=9% Similarity=0.132 Sum_probs=155.4
Q ss_pred ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311 739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 818 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~ 818 (1102)
...|.++.|-.+...++.+...|.|.+-|..+ ...... ..-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence 36899999999999999999999988866432 211110 1246779999999999
Q ss_pred CeEEEEeCCeEEEEEcCCCceeeeecCC-----CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeeecccccc
Q 001311 819 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKR 892 (1102)
Q Consensus 819 ~~las~sdg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~ 892 (1102)
+.++..+.+...++...+...+....-+ .+....+-|-. ....+ -| ..|...-.+.... +......-| +.
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~~ 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-DH 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-cC
Confidence 9999998533334444444444332211 11122222221 00011 01 1111111111110 000111112 22
Q ss_pred ceeEEEecCCCEEEEE-----cCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeE
Q 001311 893 ITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQL 963 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i 963 (1102)
=++|.|--||+++|+. ...+.|+|||-+ +.... .... ..+.-.+++|-|.|.++++- +|+.|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns------~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS------TSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc------ccCc--ccccccceeecCCCCeEeeeeecCCCCcE
Confidence 3569999999999973 333789999987 32211 1110 11234789999999999982 56678
Q ss_pred EEEEcCCceEeeeecc--CCCCCCeeEEEEcCCCcEEEE---EeCCCeEEEEEcCCceeEE--EeCCCcccCCCCCCCcc
Q 001311 964 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRC--RINPSAYLPAGVSSSNV 1036 (1102)
Q Consensus 964 ~iwd~~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~s---~s~Dg~I~vwd~~~~~~~~--~~~~~~~~~~gh~~~~v 1036 (1102)
.+|.-+..+. ..+.. .....+|..++|+.++..||+ ......|++|-+.+..--. .+. .+.. .
T Consensus 269 vffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~-----~ 338 (1265)
T KOG1920|consen 269 VFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK-----A 338 (1265)
T ss_pred EEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc-----c
Confidence 8888654332 22211 111344999999999999987 4455569999988765332 222 1111 1
Q ss_pred cceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1037 HPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1037 ~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
-+.|+|-....|..-..+|...+.++
T Consensus 339 ---~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 ---LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ---cccccCCCceeEEEEecCCcEEEEEE
Confidence 26677655555555555665555444
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.4e-07 Score=62.68 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.1
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1e-05 Score=91.30 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=132.4
Q ss_pred CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce
Q 001311 848 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 927 (1102)
Q Consensus 848 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 927 (1102)
..++|++++ +++++.|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457788886 4799999999999999965 333 444456554 56799999999999999999887654221
Q ss_pred eeeecCCCCCCCCCCCcEEEEccC-----CcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe
Q 001311 928 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~~~~spd-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 1002 (1102)
. ... .++.+++++|| .+++++|+...+.++.-.-.........+...++|.++.| .|.++|-++
T Consensus 109 ~--df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 Y--DFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred E--ecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1 111 36789999998 5666775444477765432222222222344789999999 588899887
Q ss_pred CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1003 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1003 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
++| |+|||+.+++.+..+.+.... -....++-.+.|.+ ...|+. |.--+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~----~R~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQS----VRPELFPPHLHWQD--EDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCC----CCcccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence 666 899999999999888754422 23335566788886 345555 467788998887
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=0.0023 Score=62.86 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=84.6
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 431 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 431 (1102)
+..-+|.+.+++.|+..+.+.--|..+|+...+.. + ...|.+-+.- -|++++.|+..|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCc
Confidence 34456667789999999999999999998765311 1 2233332222 4788999999999
Q ss_pred EEEEEccCCceeeeEEEeeccccCEEE-EEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311 432 VQIYSYHGGDEVRQHLEIDAHVGGVND-IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495 (1102)
Q Consensus 432 v~vwd~~~~~~~~~~~~l~~h~~~V~~-v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~ 495 (1102)
+++-+.++|........+ +.|.+ ....+++. ++..|+.|++.+.-|.++..++...+-
T Consensus 75 lYfl~~~tGs~~w~f~~~----~~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVIL----ETVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEEEEecchhheeeeeeh----hhhccceEEcCCCc--eEEEecCCCcEEEecccccceEEeccc
Confidence 999999999766543222 22222 23456777 899999999999999999999988663
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4e-05 Score=79.47 Aligned_cols=223 Identities=14% Similarity=0.183 Sum_probs=131.5
Q ss_pred ccCCCCCCeEEEEEccCCC-eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
++.+|...|..++|||..+ +|..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6889999999999999777 78889999999999999976554 34555 78999999999987 8999999999999
Q ss_pred EeCCCCee-eEEeec--CCCCeEEEeeee----cCCccEEEEEeCCCeEEEEEcCCCCCe--eeecCC-CCeeeEEEEcc
Q 001311 482 WDATNGAK-QYIFEG--HEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAP-GRWCTTMAYSA 551 (1102)
Q Consensus 482 Wd~~~~~~-~~~~~~--h~~~v~~v~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~-~~~v~~~~~s~ 551 (1102)
+|++..+- +..+.+ ...+|..++..+ .+.|.+++..+. .+.+|++...... ..++.. .+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986543 222222 233444333110 011223443332 2445654322111 111111 11222222222
Q ss_pred ----------------------------CCcee------eeccccCc---eeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001311 552 ----------------------------DGTRT------YQGFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMDS 593 (1102)
Q Consensus 552 ----------------------------~~~~~------~~~~~~~~---i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 593 (1102)
+|..+ +.|..... -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 11111 10111000 011222344455555 55678999999999
Q ss_pred cceEEEEcCCCCCCCcCeEEEcC-C-CCEEEEEECCCcEEEEEcc
Q 001311 594 VQLLTSIDADGGLPASPRIRFNK-D-GCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 594 ~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~iwd~~ 636 (1102)
++.++++.... .|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998653 465555433 3 34555554 5688887643
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.26 E-value=1.2e-05 Score=91.66 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=133.7
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 895 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1102)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 444566666 778889999988887777655656666655 6789999999999999999999999999999999986
Q ss_pred EEEecCCCEEEEEcC---------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEEEEEeCCeEE
Q 001311 896 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 964 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~d~~i~ 964 (1102)
+.. .|+.|+++|. |.-|+|||+..-+.. .++++..+ ..-+.|.|. .+..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6889999876 556899999875432 22333332 245677774 3444447888888
Q ss_pred EEEcCCce-E-eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 965 IFETTKLE-C-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 965 iwd~~~~~-~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
+-|..+.. . ......+.-...+..+++|++|..||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843321 1 11222223355699999999999999999999999997
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=6.9e-05 Score=85.34 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=132.8
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEecCCCEEEEEcCCCc-----EEEEEcCCCcccc-
Q 001311 854 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 926 (1102)
Q Consensus 854 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~- 926 (1102)
+|++ ++..+|.|+.+|.|.+++ .+.+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3566 778999999999999887 345566788888777 555554445578999888764 8999998764333
Q ss_pred eeee---ecCCCCCC-CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC--ceEeeeeccCCCCCCeeEEEEcCCCcEEE
Q 001311 927 NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVY 999 (1102)
Q Consensus 927 ~~~~---~~~~~~~~-~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 999 (1102)
..++ .......+ .+.++..++.+.+-+.+|+| .+|.|..+.-+- .+-.+.-..+....+|+.+++..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 3333 22221111 24678899999999999998 888888885322 11112222223378999999999999844
Q ss_pred EEeCCCeEEEEEcCCcee-EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001311 1000 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus 1000 s~s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
-+..-..|.+|.+....+ .+.+. +++.... +.+|++..+ .++++ .+..|.+++....+..|.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~-qfIca-~~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTY-QFICA-GSEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCc-cEEEe-cCceEEEEcCCCcceeee
Confidence 444567899999884332 22222 1122234 677776322 24444 367788888876654443
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.4e-05 Score=79.19 Aligned_cols=243 Identities=13% Similarity=0.104 Sum_probs=143.2
Q ss_pred CCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-
Q 001311 805 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 881 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~- 881 (1102)
+...|..++|||..+ ++..++ +.+|+|.|+++..++..+..+ ..+.+++|.-++.++|..|..+|.|+|||++.-+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 788899999999988 667777 899999999999888888877 7799999999788899999999999999998633
Q ss_pred eeeeecc--ccccceeEE------EecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311 882 VKSKLKG--HSKRITGLA------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 953 (1102)
Q Consensus 882 ~~~~l~~--h~~~V~~l~------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 953 (1102)
.+..+.+ -..+|-.|+ ..+-|.+|+....+ +..|++.........+...- .++...++.+.+-.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-----~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-----PPGICISMQYHGVSN 343 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-----CCcceeeeeecCccc
Confidence 2222222 122333333 23345556555443 67787765332111111111 112344555555445
Q ss_pred EEEEE--eCC------eEEE-EEcCCceEeeeeccCCC-CCCe------eEEEEcCCCcEEE-EEeCCCeEEEEEcCCce
Q 001311 954 HFLVV--HET------QLAI-FETTKLECVKQWVPRES-SAPI------THATFSCDSQLVY-ACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 954 ~l~~~--~d~------~i~i-wd~~~~~~~~~~~~~~h-~~~v------~~l~~spd~~~l~-s~s~Dg~I~vwd~~~~~ 1016 (1102)
.+..+ .+. .+-. -|-.+|..+..... +| .+.- ..+.=.+|..+++ ++.....+.+||..+++
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE 422 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence 55442 211 1111 12222322222111 11 1110 1112245666665 44455789999999999
Q ss_pred eEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
.+.++... ..+. .+.....++.-++..-.|..++|++.+.
T Consensus 423 vvQ~l~~~---------epv~--Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 423 VVQTLALS---------EPVL--DICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred eeeecccC---------ccee--ecceeecCCcchhhheecceEEEEecCC
Confidence 99988733 1244 4444433444444455688888887653
No 329
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.21 E-value=1.2e-06 Score=68.13 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=42.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCH
Q 001311 25 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 78 (1102)
Q Consensus 25 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 78 (1102)
++..++++|++|+|+.|++.+...........+. +.|.|++|+|+|||+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence 3788999999999999999998874322222233 8999999999999998864
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=3.8e-06 Score=59.00 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=36.5
Q ss_pred CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311 837 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 876 (1102)
Q Consensus 837 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 876 (1102)
++++.++.+|.+.|++++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 357889999999999999999 899999999999999997
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.20 E-value=0.001 Score=69.89 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=144.3
Q ss_pred eeEEEEecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe--C
Q 001311 809 VPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM--D 868 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~--~ 868 (1102)
.-.+.++||++.+++++ ...|.+||..+.....++.-... ....++++. |++++.+.. -
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence 44578899999888752 12499999999887776432221 234467777 777776643 3
Q ss_pred CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-CcccceeeeecCCCCCCCCCCCcEEE
Q 001311 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~ 947 (1102)
-.+|.|.|+..++.+.++.-. ....+--+. .+-+.+.|.||.+.-..++. |+.. ......+..... .....-+
T Consensus 117 a~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~d--p~f~~~~ 190 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDD--PLFEHPA 190 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS---B-S--E
T ss_pred CCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCc--ccccccc
Confidence 457888888888877766522 122222222 34678888999999998884 4433 222223322111 1223344
Q ss_pred Ecc-CCcEEEEEeCCeEEEEEcCCceEe--eeeccC------CC--CCCeeEEEEcCCCcEEEEEeCC--------C--e
Q 001311 948 FHQ-DQIHFLVVHETQLAIFETTKLECV--KQWVPR------ES--SAPITHATFSCDSQLVYACFLD--------A--T 1006 (1102)
Q Consensus 948 ~sp-dg~~l~~~~d~~i~iwd~~~~~~~--~~~~~~------~h--~~~v~~l~~spd~~~l~s~s~D--------g--~ 1006 (1102)
++. ++.++.++.+|.|+-.|+...... ..|..- .+ .+.-.-+++.+....|++-... + .
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 444 456777789999998888665422 122110 00 1233457777766555544322 1 4
Q ss_pred EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCCcc
Q 001311 1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESEGK 1071 (1102)
Q Consensus 1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~~~ 1071 (1102)
|.++|+.+++.+.++. +... +. +|..+.++.-+|++. ..++.|.+||..+++..
T Consensus 271 VWv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 8888999999999988 3221 43 677777665577655 45899999999999833
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.0002 Score=80.10 Aligned_cols=121 Identities=10% Similarity=0.024 Sum_probs=94.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
|...|.--+++..+++ ++.|+.-|.+++++-.+++.+.. ...+-.+.+..++.|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5566777778888887 99999999999999887766542 1233456777788999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEE---eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
.|+..|.|.|+-+..+..-..... -..|...|+|++|++|+. .+++|...|.|..-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 999999999998877443222111 123778999999999999 699999999999988877
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.0085 Score=66.90 Aligned_cols=104 Identities=16% Similarity=0.276 Sum_probs=64.1
Q ss_pred ecCCCeEEEEE--------ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311 355 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 426 (1102)
Q Consensus 355 spdg~~llasg--------~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 426 (1102)
|||++++|+.- +..+.+.|+|+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999866632 223679999999876654 22225678999999999999988
Q ss_pred ECCCeEEEEEccCCceeeeEEEeec-------c---------ccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEe
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD 483 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd 483 (1102)
. ++.|.+++..++...+. +..| - -+.-..+-||||+++ |+.. -.+..|+.+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence 6 57899999888754432 1222 0 112356889999996 4333 3344444443
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.12 E-value=5.4e-05 Score=86.48 Aligned_cols=184 Identities=11% Similarity=0.123 Sum_probs=129.9
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
++..++-|+-...+..+|+.+.+..+. ..--.+.|.-|+. +++ ++.+|...|+|.+-|..+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 456777788888899999998876553 2222334655554 566 799999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEeC---------CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
.|.++.. .|+.|+++|. |..|+|||++..+.+..+..+.++ .-+.|.|.=.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------------- 278 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------------- 278 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc---------------
Confidence 9987753 3468888875 556899999987765544333221 1122222211
Q ss_pred EcCCCCEEEEEeCCCeEEEEE---CCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 570 FDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
..+++++..|...+-| +.+.. ...+..+.....+..+.+++++..++.|..+|.|.+|.-
T Consensus 279 -----t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 279 -----TRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -----ceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 3577888889999888 33221 222222222335889999999999999999999999973
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00048 Score=78.82 Aligned_cols=203 Identities=13% Similarity=0.172 Sum_probs=138.5
Q ss_pred EEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCcEEEEEeCCC-----cEEEEEeecc----
Q 001311 812 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD---- 880 (1102)
Q Consensus 812 l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~---- 880 (1102)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++-++|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45678888999998 899888874 34555778877777 44444443 556888777765 4999999742
Q ss_pred --eee--eeecc-----ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311 881 --EVK--SKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 951 (1102)
Q Consensus 881 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 951 (1102)
.++ ..+.. ...++.+++.+.+-+.+|+|-.||.|..+.=+--+....+..-...+ ..+|+.++|-.|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence 233 12222 24568899999999999999999999988543322222222222222 258999999999
Q ss_pred CcE-EEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 952 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 952 g~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
++- +.++.-..|.+|.+.... ........|+..+.|..|++...-+++|+ +..+.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 988 556788899999998444 33222346788899999986555355554 5679999988666555554
No 336
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.9e-05 Score=81.11 Aligned_cols=156 Identities=14% Similarity=0.216 Sum_probs=111.5
Q ss_pred hhHHhHHHHHHHHhhhcCCCc--------cHHHHHHHHhcCCHHHHHHHhcccc-cccCccccchhhHHHHHhHhHHHhc
Q 001311 4 SSKKLFTSKHFLLEQESGFFF--------NMKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALD 74 (1102)
Q Consensus 4 ~~~~g~~~s~~~l~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~~Ell~ 74 (1102)
+-.+||.++|..|-++|.+.- ++...+++|++|+...|+...+.=+ .+... ...+.|.+..|.|+||+.
T Consensus 126 mlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~--~S~lEf~lRlQefIELi~ 203 (389)
T KOG0396|consen 126 MLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE--ESSLEFQLRLQEFIELIK 203 (389)
T ss_pred HHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHHHHHH
Confidence 457899999999999999983 3888999999999999988775421 11111 222779999999999999
Q ss_pred CCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC-chhHH-HHHHH-HHHhhcccCcccccccCC
Q 001311 75 KHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSAR-SIMLV-ELKKLIEANPLFRDKLQF 151 (1102)
Q Consensus 75 ~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~~R-~~l~~-~l~~~i~~~~~~~~~~~~ 151 (1102)
.+++.+|+.+.++.+.|...-+.++++....+|.++...+... |.+ -...| +.|.+ -++++.+---
T Consensus 204 ~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l~~-------- 272 (389)
T KOG0396|consen 204 VDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKLFG-------- 272 (389)
T ss_pred hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHHhC--------
Confidence 9999999999999999998878999999999999875543332 555 23345 33322 2333332211
Q ss_pred Cccch-HHHHHHHHHHHHHHHH-hc
Q 001311 152 PNLKN-SRLRTLINQSLNWQHQ-LC 174 (1102)
Q Consensus 152 ~~~p~-~rL~~ll~q~~~~q~~-~~ 174 (1102)
+|. .+|.++|+--+..|.- .|
T Consensus 273 --i~~~~~L~~~l~~GLsalKTp~c 295 (389)
T KOG0396|consen 273 --IPINPALTIYLQAGLSALKTPRC 295 (389)
T ss_pred --CCCCcHHHHHHHhhhhhcccccc
Confidence 222 2477777766666644 45
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.06 E-value=0.0038 Score=72.85 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=93.4
Q ss_pred EEEecCCCcEEEEEeCCC------------------cEEEEEeecceeeeeecc--ccc----cceeEEEe----cCCC-
Q 001311 853 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN- 903 (1102)
Q Consensus 853 l~~sp~d~~~lasg~~dg------------------~v~vwd~~~~~~~~~l~~--h~~----~V~~l~~s----~d~~- 903 (1102)
.++.+ .+.+++.++.++ .|.-+|..+|+.+-..+. |.. ......+. -++.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 456777777665 799999999998876542 211 00111111 1343
Q ss_pred --EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE------------------EeCCeE
Q 001311 904 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL 963 (1102)
Q Consensus 904 --~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~------------------~~d~~i 963 (1102)
.++.++.+|.+...|.++|+..-...... ..++.+| +...+. ..++.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 57788899999999999987643322110 1122233 111111 135677
Q ss_pred EEEEcCCceEeeeeccCCCC------CCe--eEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 964 AIFETTKLECVKQWVPRESS------API--THATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 964 ~iwd~~~~~~~~~~~~~~h~------~~v--~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.-.|..+|+.+-......+. .+. ..+.. .+.+|+.++.||.|+.+|..+|+.+-+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 78888888876655432111 111 12222 56788889999999999999999998877
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0024 Score=74.58 Aligned_cols=211 Identities=12% Similarity=0.078 Sum_probs=115.5
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeec---cccCEE--EEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGVN--DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~---h~~~V~--~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~ 494 (1102)
+..+..++.++.|.-.|..+|+.+-....-.. +...+. .++.. ++. .++.++.++.|.-+|.++|+.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 55666777889999999999886543211000 000110 11221 213 47778889999999999999998775
Q ss_pred cCCCC-----eEE-EeeeecCCccEEEEEe---------CCCeEEEEEcCCCCCeeeecCCCCeeeEEE-EccCCceeee
Q 001311 495 GHEAP-----VYS-VCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQ 558 (1102)
Q Consensus 495 ~h~~~-----v~~-v~~~~~~~~~~l~s~s---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~ 558 (1102)
..... +.+ ..+ .. .+++.++ .++.|..+|..+++.+..+........... +.... ...
T Consensus 138 ~~~~~~~~~~i~ssP~v--~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~- 211 (488)
T cd00216 138 NNDQVPPGYTMTGAPTI--VK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW- 211 (488)
T ss_pred CCCCcCcceEecCCCEE--EC--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence 43221 111 111 11 3455553 367899999999888776654321110000 00000 000
Q ss_pred ccccCce-eEEEEcCCCCEEEEEeCCC------------------eEEEEECCCcceEEEEcCCCCCC----CcCeEEEc
Q 001311 559 GFRKRSL-GVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN 615 (1102)
Q Consensus 559 ~~~~~~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s 615 (1102)
+.....+ ...++++.+..++.++.++ .|.-+|+.+|+.+..++...+.. ......+.
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence 0111111 1244555556677776554 79999999999888875322110 00111111
Q ss_pred ----CCCC---EEEEEECCCcEEEEEccCCc
Q 001311 616 ----KDGC---LLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 616 ----~~~~---~l~~~~~dg~i~iwd~~~~~ 639 (1102)
-++. .+++++.+|.+...|..+++
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 1333 57778888888888888883
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.00085 Score=74.54 Aligned_cols=280 Identities=12% Similarity=0.171 Sum_probs=141.8
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccccccCC-CCccc-----------ccccceeccC--------CCcccccccc
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS-SGKAT-----------ASVAPQLWQP--------PSGIMMTNDV 800 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~-----------~~~~~~~w~~--------~~~~~~~~~~ 800 (1102)
.|+.+.|+++..-|+++...|.+.+|.+....... ..... ....-.+-|+ ..|.+....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998889999999999999987764432 00000 0001112221 1232222222
Q ss_pred CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee--ecC------CCCCeeEEEEec----CCC---cEEE
Q 001311 801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FMP------PPPAATFLAFHP----QDN---NIIA 864 (1102)
Q Consensus 801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~--~~~------~~~~i~~l~~sp----~d~---~~la 864 (1102)
.. ..++|++++.| |=-++|+|. +|.+.|.|++....+.. +.. ....|+++.|+- +|+ -.|+
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47889999997 445999999 89999999988777655 222 234588888872 133 4788
Q ss_pred EEeCCCcEEEEEeec---ceeeeeec----cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee--ee-cCC
Q 001311 865 IGMDDSSIQIYNVRV---DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQ-IPT 934 (1102)
Q Consensus 865 sg~~dg~v~vwd~~~---~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~-~~~ 934 (1102)
+|+..|.+.+|.+.- +.....+. .+.++|..| ...+.++++...... ++ ...
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998752 11111111 122222222 222333333211110 00 000
Q ss_pred CCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEc-----CCCcEEEEEeCCCeEEE
Q 001311 935 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1009 (1102)
Q Consensus 935 ~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-----pd~~~l~s~s~Dg~I~v 1009 (1102)
+. ....+++++.+..++++...+.+...... ...-....+++- ..+..|++-..||.|++
T Consensus 222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 00 01235666789999999998887765544 112233344452 35677889999999999
Q ss_pred EEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311 1010 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus 1010 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
|.+...+.+..+....... ..... ..++++ +|+.++-.+ ...+.++.
T Consensus 287 ~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~s 333 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFS 333 (395)
T ss_dssp EETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEE
T ss_pred EECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEE
Confidence 9999999998887321111 11122 455666 577666554 33434333
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00043 Score=77.58 Aligned_cols=157 Identities=12% Similarity=0.127 Sum_probs=90.1
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..+....++++..++++++..|.|.++.++. ...++.. .+. .....|...|++++|++|+.
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~----------------~~t--~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLD----------------YVT--PCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcce----------------eec--cccccCCceEEEEEeccccc
Confidence 4455667788888788888888888887643 1111111 111 11122788999999999999
Q ss_pred eEEEEe-CCeEEEEEcCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc-ccc-c
Q 001311 820 YVMSAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSK-R 892 (1102)
Q Consensus 820 ~las~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-h~~-~ 892 (1102)
.+.+|. .|+|..-.+.+.. ..+.+....+.|..+.+.. +.+|++...- -.+++.+.++..+.=+. ..+ .
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~ 213 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEAETITQIGKKPRKSLI 213 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecchhHHHHhcCCCcCCcc
Confidence 999998 6998888877621 1233334567788887763 5555543322 23444443321111111 111 1
Q ss_pred ceeEEEecC----CCEEEEEcCCCcEEEEEcC
Q 001311 893 ITGLAFSHA----LNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 893 V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~ 920 (1102)
-.+.+|-|. .+-.+.++.=| .|+|..+
T Consensus 214 ~~GACF~~g~~~~q~~~IycaRPG-~RlWead 244 (726)
T KOG3621|consen 214 DFGACFFPGQCKAQKPQIYCARPG-LRLWEAD 244 (726)
T ss_pred ccceEEeeccccCCCceEEEecCC-CceEEee
Confidence 234555544 34455555555 7888765
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.0012 Score=73.67 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=149.8
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1102)
.+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++.....+..+ ...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~----------- 85 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPG----------- 85 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTT-----------
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-cee-----------
Confidence 56799999998765444332 23578899999999999886 578999987776222111111 000
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311 663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 742 (1102)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 742 (1102)
+..|-.| |-.++ .--+.-
T Consensus 86 ------------------------------------------i~nG~~d-----wvyeE---------------Ev~~~~ 103 (353)
T PF00930_consen 86 ------------------------------------------IYNGVPD-----WVYEE---------------EVFDRR 103 (353)
T ss_dssp ------------------------------------------EEESB-------HHHHH---------------HTSSSS
T ss_pred ------------------------------------------EEcCccc-----eeccc---------------cccccc
Confidence 0000000 00000 000112
Q ss_pred EEEEEccCCceEEEeecC-ceEEeeeccccc-------------cCCCCcccccccceeccCCCccccccccC--CCCCC
Q 001311 743 SRLIFTNSGNAILALASN-AIHLLWKWQRTE-------------RNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNPE 806 (1102)
Q Consensus 743 ~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~ 806 (1102)
..+.|||||++|+....| ..+..+.+..-. ....|.......+.++++.++........ .....
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 356788888877776654 444443332111 11223333444566788877765432222 01235
Q ss_pred CCeeEEEEecCCCeEEEE-eC-----CeEEEEEcCCCceeeeecC-CC---CCeeEEEEe-cCCCcEEEEEeCCCcEEEE
Q 001311 807 EAVPCFALSKNDSYVMSA-SG-----GKISLFNMMTFKTMATFMP-PP---PAATFLAFH-PQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~-sd-----g~I~iwd~~~~~~~~~~~~-~~---~~i~~l~~s-p~d~~~lasg~~dg~v~vw 875 (1102)
..+..+.|.++++.|+.. .+ ..+.+.|..++.+...... .. ..-....|. ++++.+|.....||.-+||
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 568899999999944443 22 2377778877655433221 11 223456665 6466777777788865555
Q ss_pred Eee--cceeeeeecccccccee-EEEecCCCEEE-EEcCCC----cEEEEEcC-CCcccceeeeecCCCCCCCCCCC-cE
Q 001311 876 NVR--VDEVKSKLKGHSKRITG-LAFSHALNVLV-SSGADS----QLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSD-TR 945 (1102)
Q Consensus 876 d~~--~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~s~Dg----~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v-~~ 945 (1102)
-+. .+. ...+....-.|+. +.++++++.|. ++..+. .|..-+++ +++. .++.... .. ..
T Consensus 264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~-------~~~~~ 332 (353)
T PF00930_consen 264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCED-------GDHYS 332 (353)
T ss_dssp EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTS-------STTEE
T ss_pred EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCC-------CCceE
Confidence 544 444 4456555566755 67788876654 555432 34444555 3221 2222211 22 48
Q ss_pred EEEccCCcEEEE
Q 001311 946 VQFHQDQIHFLV 957 (1102)
Q Consensus 946 ~~~spdg~~l~~ 957 (1102)
+.|||+|++++.
T Consensus 333 ~~~Spdg~y~v~ 344 (353)
T PF00930_consen 333 ASFSPDGKYYVD 344 (353)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEECCCCCEEEE
Confidence 999999999987
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.002 Score=71.59 Aligned_cols=268 Identities=14% Similarity=0.196 Sum_probs=139.0
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEE------ee------------eeeeeccCCCCcc------ccccc
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSMP------LQAAL 403 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~------~~------------~~~~~~~~~~~~~------~~~~~ 403 (1102)
.|++|.|+++..- |++|...|.|.||.+...+.-. .. .-++.|+..+..+ .+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999775 9999999999999986543322 00 1123344332222 12234
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeec------cccCEEEEEEc-----CCC-CeeEEE
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI 471 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~------h~~~V~~v~~s-----~d~-~~~~l~ 471 (1102)
+....++|++++.| |=.++|+|+.+|.+.|.|+++...+.. ..+.. ....|+++.|+ .|+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999997 667999999999999999987765533 22333 23468888886 222 224788
Q ss_pred EecCCCcEEEEeCC-C--Ceee----EEeecCCCCeEEEeeeecCCc-------------------cEEEEEeCCCeEEE
Q 001311 472 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKENI-------------------QFIFSTALDGKIKA 525 (1102)
Q Consensus 472 s~~~d~~i~vWd~~-~--~~~~----~~~~~h~~~v~~v~~~~~~~~-------------------~~l~s~s~dg~i~~ 525 (1102)
.|...|.+.+|.+. . +... .....+.++|..++.-...+| +-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88899999999775 1 2211 122246677766653211110 11333344678888
Q ss_pred EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC-
Q 001311 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG- 604 (1102)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 604 (1102)
+...+.+..............+.+.+-. . ...+..|++-..+|.|++|.+..-+.+..+....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 8777655443322111111122221000 0 1123457888899999999999998888776532
Q ss_pred -CCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 605 -GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 605 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
....+...+++++|..++-.+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 1123456778888886665543 34444443
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00038 Score=79.06 Aligned_cols=185 Identities=14% Similarity=0.193 Sum_probs=126.9
Q ss_pred CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
...++|++++ +++++-|. +|.|++++.... . .+...|... .- +|.++++|+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 3446666654 56899998 899999997643 2 333334433 34 89999999999999999998887766
Q ss_pred eeccccccceeEEEecC-----CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe
Q 001311 885 KLKGHSKRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 959 (1102)
Q Consensus 885 ~l~~h~~~V~~l~~s~d-----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 959 (1102)
++. ...++.+|+++|| .+.+++||.-| +.++.-.=-.......+.. ..++|.++.| .|.++|-+.
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------GEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------CccceEEEEe--cCcEEEEec
Confidence 655 4567999999998 57899999988 7766422111101111221 2257788877 567888899
Q ss_pred CCeEEEEEcCCceEeeeeccCCC----CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311 960 ETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 960 d~~i~iwd~~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
|-.|++||+.+++.+..+..... ..-...+.|.++.++++ | .--+|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 99999999999998877654221 12234678887765443 4 45578888776
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.91 E-value=0.0074 Score=64.96 Aligned_cols=288 Identities=15% Similarity=0.101 Sum_probs=137.3
Q ss_pred EEEEccCCceEEEeec-CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311 744 RLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 822 (1102)
Q Consensus 744 ~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la 822 (1102)
.=+|.+||+.|+.++. +|.-.+|-+ |+.+++.... +.. .........++++++.++
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEE
Confidence 3467889987776665 555555543 4455554332 111 111222466778888877
Q ss_pred EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCCcEEEEEeC----------------------CCcEEEEEee
Q 001311 823 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMD----------------------DSSIQIYNVR 878 (1102)
Q Consensus 823 s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~----------------------dg~v~vwd~~ 878 (1102)
... +..|+-.|+.+.+....+......+....|. ..|+..++-.-. ...|..-|+.
T Consensus 97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 665 5789999999987665555555555445554 225555543211 1245555666
Q ss_pred cceeeeeeccccccceeEEEecCCCEEEEEcC----CCc-EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311 879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 953 (1102)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 953 (1102)
+|+....+. -..-+..+.|||....++.=+. |.. -|||-+.+.......+.+ +. ....+..=-|.|||.
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~----~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR----RM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS
T ss_pred CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec----CC-CCcccccccccCCCC
Confidence 666444433 3445677899997666555433 332 367766543221111111 11 113456678999999
Q ss_pred EEEE-Ee-----CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC----------------eEEEEE
Q 001311 954 HFLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFS 1011 (1102)
Q Consensus 954 ~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg----------------~I~vwd 1011 (1102)
.|.. +. +..|.-+|..+++...... ......+..++||++++-=+.|. -|++++
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 8876 32 3367788888887644322 22455667789999887444332 567788
Q ss_pred cCCceeEEEeCC-Ccc-cCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1012 AANLKLRCRINP-SAY-LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1012 ~~~~~~~~~~~~-~~~-~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
+..+........ ..+ .-.|+ .. +.---..|+|++...|.+....|...|+-++
T Consensus 327 ~~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 327 VEAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTTEEEEEEE-------BTTB-SS-TT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 888765432221 001 11110 11 1112489999654456677777877777654
No 345
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.88 E-value=0.06 Score=63.08 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=65.9
Q ss_pred EEEEecCCCcEEEEeCCCCeeeEEeecCC-CCeEE----------EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee
Q 001311 469 CVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYS----------VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY 537 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~-~~v~~----------v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1102)
.++.++.++.|.-.|..+|+.+..+.... ..+.. +.+ . +..++.++.|+.|...|..+++.+...
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--Y--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--E--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 36666777889999999999887765321 11111 111 1 236778888999999999988877655
Q ss_pred cCCCCee-eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe------CCCeEEEEECCCcceEEEEcC
Q 001311 538 EAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG------DDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 538 ~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
....... ..+.-+| .+. + ..++.+. .+|.|+.+|.++|+.+..+..
T Consensus 147 ~~~~~~~~~~~tssP-----------------~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAP-----------------LVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCc-----------------EEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4321100 0000000 000 1 2344433 368999999999998877653
No 346
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.87 E-value=0.12 Score=61.11 Aligned_cols=468 Identities=10% Similarity=0.074 Sum_probs=234.9
Q ss_pred cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee--cCCCCeEEEeeeecCCcc----EEEEEeCCCeEEEEE
Q 001311 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWL 527 (1102)
Q Consensus 454 ~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~----~l~s~s~dg~i~~wd 527 (1102)
+.++..+.+.+..+ ++.++.++.+...++..+. ++... .....|.|+.+++.++++ +++.|.-+..+
T Consensus 488 ~~~ti~~~~~n~sq--VvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~---- 560 (1096)
T KOG1897|consen 488 GKITIGVVSANASQ--VVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDIS---- 560 (1096)
T ss_pred CceEEEEEeecceE--EEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceE----
Confidence 34455455555553 5555556777777777666 32222 234568888777655443 45555433322
Q ss_pred cCCCCCeeeecCCCCeeeEEEEccCCceeeecc-----ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC--cceEEEE
Q 001311 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSI 600 (1102)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~ 600 (1102)
.-+.+.||...+.... -...+-...+-.+..+|+++..||.+.-|.+.. +..-..-
T Consensus 561 -----------------~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K 623 (1096)
T KOG1897|consen 561 -----------------MILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK 623 (1096)
T ss_pred -----------------EEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc
Confidence 2233333332111110 012333445555678999999999998776554 3332222
Q ss_pred cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311 601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 680 (1102)
Q Consensus 601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1102)
+.+-++.++.--.|+..++.-+.+.+|.-..+|..+.. -.+..+.-..-. ....|+..+
T Consensus 624 k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~-------~~c~f~s~a------------- 682 (1096)
T KOG1897|consen 624 KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN-------HMCPFNSDA------------- 682 (1096)
T ss_pred ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh-------hhccccccc-------------
Confidence 22333344544556665555444555666666653322 122111100000 000111100
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311 681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 760 (1102)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 760 (1102)
....++ ....+.+++..++....... +++ | -......+++.+....+.+.+.-
T Consensus 683 --------------------~~d~l~-~~~~~~l~i~tid~iqkl~i-rtv--p---l~~~prrI~~q~~sl~~~v~s~r 735 (1096)
T KOG1897|consen 683 --------------------YPDSLA-SANGGALTIGTIDEIQKLHI-RTV--P---LGESPRRICYQESSLTFGVLSNR 735 (1096)
T ss_pred --------------------CCceEE-EecCCceEEEEecchhhcce-eee--c---CCCChhheEecccceEEEEEecc
Confidence 111222 22335566666554332211 111 1 12344556666644333333322
Q ss_pred ceEEeeeccccccCCCCcccccccceeccCCCccccccc-cCCCCCCCCeeEEEEecC-CCeEEEEe-----------CC
Q 001311 761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GG 827 (1102)
Q Consensus 761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~i~~l~~s~d-~~~las~s-----------dg 827 (1102)
.....= . .+.......++++|.++-+..... +........+.++.|..| +.++++|. .|
T Consensus 736 ~e~~~~-------~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G 807 (1096)
T KOG1897|consen 736 IESSAE-------Y-YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG 807 (1096)
T ss_pred cccchh-------h-cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence 111000 0 011111112345555554433321 111001122344447766 77887773 26
Q ss_pred eEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEE
Q 001311 828 KISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 905 (1102)
Q Consensus 828 ~I~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l 905 (1102)
.|.+|.+...+.+.....+ .+.+.++..- +|++||. -+..|++|+..+.+.++.-..|...+..+...-.|..+
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI 883 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEI 883 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEE
Confidence 7888888774444443322 3445555443 5777763 56789999999987777777788999999999999999
Q ss_pred EEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce----------Eee
Q 001311 906 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVK 975 (1102)
Q Consensus 906 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~----------~~~ 975 (1102)
+.|+--+.+.+--.+..+-.......-.. . ...+++.+-.+..++.+-.+|.+.+...++.. .+.
T Consensus 884 ~VgDlm~Sitll~y~~~eg~f~evArD~~--p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~ 958 (1096)
T KOG1897|consen 884 AVGDLMRSITLLQYKGDEGNFEEVARDYN--P---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVG 958 (1096)
T ss_pred EEeeccceEEEEEEeccCCceEEeehhhC--c---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhccccee
Confidence 99998887776665543321112221111 1 35677778788888777666766665443210 111
Q ss_pred eeccC------CCCCCeeEE--EEcCCCcEEEEEeCCCeEEEE
Q 001311 976 QWVPR------ESSAPITHA--TFSCDSQLVYACFLDATVCVF 1010 (1102)
Q Consensus 976 ~~~~~------~h~~~v~~l--~~spd~~~l~s~s~Dg~I~vw 1010 (1102)
.|..+ .|..-|.++ ..+|-+..+..|..+|.|-+-
T Consensus 959 ~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 959 KFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 11110 133334331 234445557788888887654
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=5.1e-06 Score=90.95 Aligned_cols=204 Identities=15% Similarity=0.244 Sum_probs=129.1
Q ss_pred CCCCeeEEEEecCCC-eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCe
Q 001311 345 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 422 (1102)
Q Consensus 345 h~~~v~~v~~spdg~-~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 422 (1102)
....+.|++++-+.+ .|++.|..+|.|-+-.+...... ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 456778888776544 68999999999999887653222 1114678889999999999 8888
Q ss_pred EEEEE----CCCeEEEEEccCCce--eeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEee
Q 001311 423 FGVAY----SRHIVQIYSYHGGDE--VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE 494 (1102)
Q Consensus 423 las~~----~d~~v~vwd~~~~~~--~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~ 494 (1102)
||+|- .|..+.|||+.++-. .... .+. +-.....+++|..|.+ ++++|...+.+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88873 467899999988621 1111 122 2445677899998888 78899888999999987322 11222
Q ss_pred cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE-cCCCCCeeeecCC-----CCeeeEEEEccCCceeeeccccCceeEE
Q 001311 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV 568 (1102)
Q Consensus 495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 568 (1102)
.+..+..+.+.+- .+.++++-. ||.|-+|| ...-+.......+ ...+..++|.|...
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------------- 256 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------------- 256 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence 2223444444331 335776666 89999999 4433332221111 11355555555432
Q ss_pred EEcCCCCEEEEEe-CCCeEEEEECC
Q 001311 569 QFDTTKNRFLAAG-DDFSIKFWDMD 592 (1102)
Q Consensus 569 ~~~~~~~~l~~~~-~dg~i~iwd~~ 592 (1102)
..+++.. ..++|+.+|+.
T Consensus 257 ------glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 ------GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ------chhhhhccCcceEEEeccc
Confidence 2244433 56788888875
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.85 E-value=0.0021 Score=72.42 Aligned_cols=221 Identities=10% Similarity=0.097 Sum_probs=116.5
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
.....+.++|+|+.+++ +.+|...++.... .+. ...+.....+|.+.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~----------------------~r~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALA----------------------WRN--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTT----------------------TEE--------EEEEE-SEEEE-TSSE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccC----------------------Ccc--------cccCceeEEEEecCcc
Confidence 34678999999997777 6667777765210 000 0223456788888666
Q ss_pred eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEe
Q 001311 820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 899 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 899 (1102)
+.+.-..++|.|+.--+....+.+... ..+..+-. |.+|...+.+ .|.+||..+++.++++... .|..|.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 544444788999643232332333321 12333322 6777776644 8999999999999998743 38999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCC---------cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001311 900 HALNVLVSSGADSQLCVWSSDGW---------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 970 (1102)
Q Consensus 900 ~d~~~l~s~s~Dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~ 970 (1102)
++|.+++..+.+ .+.|++.+.. -......+.... ..|.+.+|..| .++.+... +++. +-.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiYtT~~-~lkY--l~~ 222 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIYTTSN-HLKY--LVN 222 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TT-EEEE--EET
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEEEcCC-eEEE--EEc
Confidence 999999999866 5888776542 000111111111 36788899888 44444333 6666 333
Q ss_pred ceE--eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 971 LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 971 ~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
|+. +..+ ..++.=+.+.+....+.....|+.|..+.++..
T Consensus 223 Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 223 GETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp TEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 332 2222 456777778887778888888888888876643
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.81 E-value=0.0039 Score=64.10 Aligned_cols=218 Identities=11% Similarity=0.105 Sum_probs=117.5
Q ss_pred eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc-cccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 841 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 841 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
+.+.+-...+..++|.|+++.++++....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3455566679999999966778888989999988886 47777765322 245678999888888887777999999998
Q ss_pred CCCcc--cceeeeecCCCC-CCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---ceEeee-----ec-cCCCCCCe
Q 001311 920 DGWEK--QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAPI 986 (1102)
Q Consensus 920 ~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~---~~~~~~-----~~-~~~h~~~v 986 (1102)
..... .........-+. .........++|++.++.|.++ ...-..+|.+.. ...+.. +. .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 44221 111111111111 1122467899999987777776 444455665543 111111 11 11235678
Q ss_pred eEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEE
Q 001311 987 THATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus 987 ~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
.++++.|. |.+++.......|.++| .+|+.+..+......+ |-...--.+=+|+|.+ +|++.++ +.-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 99999985 55677777888999999 7888877766332111 0001112344899998 5665555 455554444
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.79 E-value=0.0003 Score=77.87 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=90.2
Q ss_pred cceeeccCCCCeeEEEEecCCCeEEEEE----ecCCe----EEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC
Q 001311 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 409 (1102)
Q Consensus 338 ~~~~~~~h~~~v~~v~~spdg~~llasg----~~d~~----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 409 (1102)
++.....-.....++.||-...+.+.|- +.+|. -.+|++..++... ..+ +-.....
T Consensus 197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~s 260 (545)
T PF11768_consen 197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLPS 260 (545)
T ss_pred EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecCC
Confidence 3344444456678888887554444442 22342 4566665443221 111 2335677
Q ss_pred CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 489 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~ 489 (1102)
.|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. +++.|+..|.+.+||+.-...
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCcc
Confidence 9999999999999999999999999999876422 223445688999999999 899999999999999875544
Q ss_pred e
Q 001311 490 Q 490 (1102)
Q Consensus 490 ~ 490 (1102)
.
T Consensus 334 ~ 334 (545)
T PF11768_consen 334 K 334 (545)
T ss_pred c
Confidence 3
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.013 Score=66.35 Aligned_cols=199 Identities=15% Similarity=0.133 Sum_probs=107.8
Q ss_pred EEEecCCCeEEEEeCC------------eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 812 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 812 l~~s~d~~~las~sdg------------~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
++.+|.|-.+|...|. .|+||+.. |+.+..+.-..+.|.++.|+. +.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 4555666666655533 59999875 456665543448899999997 554 44567899999999863
Q ss_pred ce------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeee-ecCCCCCC--CCCCCcE-EEEc
Q 001311 880 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTP--TAQSDTR-VQFH 949 (1102)
Q Consensus 880 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~--~~~~v~~-~~~s 949 (1102)
.. .+....-....+....+..+| +|.-..++.+.+-+--.... ..+.. ..+..... ....... ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEee
Confidence 22 111111122233333444455 33333444444332211110 10111 11110000 0001111 2344
Q ss_pred cCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 950 QDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 950 pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.+....+. ..++.+.+.+....+. + ...+++..+++||+|++||.-..+|.+.|...+-.+....+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 45444444 4445555444332211 1 124689999999999999999999999999877777776666
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.019 Score=59.13 Aligned_cols=162 Identities=8% Similarity=0.110 Sum_probs=96.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
-...+..++|+|+.+.|+++....+.|...+.. |+.+.... +.+ -+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445699999999988889999999999999974 77766432 223 34678899988888877
Q ss_pred EEECCCeEEEEEccCCce---eee--EEEee---ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC---CeeeEEe
Q 001311 425 VAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF 493 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~---~~~~~~~ 493 (1102)
+--.++.+.++++..... ... ...+. .+...+-.++|.+.++. |+.+-...-..++.+.. +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999843221 111 11111 34567999999999885 44445555556665543 2222111
Q ss_pred --------ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311 494 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528 (1102)
Q Consensus 494 --------~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~ 528 (1102)
......+.++.+++. .+++++....+..|..+|.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR 200 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence 123445777888754 4577788888888888883
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.01 Score=66.71 Aligned_cols=207 Identities=13% Similarity=0.128 Sum_probs=145.8
Q ss_pred CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEEeeccee
Q 001311 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV 882 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~~~~~ 882 (1102)
....+++++++..+.... ++.|.+.|..+........-- .....+++++ +++.+.++.. ++.+.+.|-.+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678888888666554 689999998776666554422 2678899999 6655555544 68999999888887
Q ss_pred eeeeccccccceeEEEecCCCEEEEE-cCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311 883 KSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 959 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~ 959 (1102)
+.....-..+ ..++++|+|..+..+ ..++.|.+.|..+..... . ..............+.++++|.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccCCCCceEEECCCCCEEEEEecc
Confidence 7775433334 889999999966555 478899999977644321 0 000001111345789999999988774 2
Q ss_pred C--CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-CeEEEEEcCCceeEEEeC
Q 001311 960 E--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 960 d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-g~I~vwd~~~~~~~~~~~ 1022 (1102)
+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 2 58999999998887763322223 57788999999998887544 889999999988887665
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.049 Score=63.81 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=87.2
Q ss_pred cEEEEEeecceeeeeecccccccee---------EEEecCCC---EEEEEcCCCcEEEEEcCCCcccceee------e--
Q 001311 871 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRF------L-- 930 (1102)
Q Consensus 871 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~------~-- 930 (1102)
.|.-.|+++|+..-.++.....++. +.+..+|+ .++.++.+|.+.+.|-.+++...... .
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788888887666542222221 12224665 78899999999999999987642100 0
Q ss_pred ec--CCCCCC-----------C-------C---CC--CcEEEEccCCcEEEE-EeC------------------------
Q 001311 931 QI--PTGRTP-----------T-------A---QS--DTRVQFHQDQIHFLV-VHE------------------------ 960 (1102)
Q Consensus 931 ~~--~~~~~~-----------~-------~---~~--v~~~~~spdg~~l~~-~~d------------------------ 960 (1102)
.+ ..+... . + +. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 000000 0 0 00 022567776655554 121
Q ss_pred ---------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 961 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 961 ---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.|.-+|+.+++..-...... ....+. +.-.+.+++.++.||.++.+|..+|+.+-+++
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357778888887766543211 111111 12255577778889999999999999998887
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.74 E-value=0.0015 Score=72.38 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCeeEEEEec-CCCeEEEE----e-CCe----EEEEEcCCCceeee---ecCCCCCeeEEEEecCCCcEEEEEeCCCcE
Q 001311 806 EEAVPCFALSK-NDSYVMSA----S-GGK----ISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 872 (1102)
Q Consensus 806 ~~~i~~l~~s~-d~~~las~----s-dg~----I~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 872 (1102)
+....++.||- +...+.+. + +|. -.+|+....+..+. --.....|.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34456677775 33333332 2 333 45666654432211 123567899999999 88999999999999
Q ss_pred EEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311 873 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922 (1102)
Q Consensus 873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 922 (1102)
.+||...+.. .+..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876532 23334456788999999999999999999999998753
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.0073 Score=68.17 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=118.1
Q ss_pred CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
...+..+.++|+|+++++++||...|+.....+... .+.....+|.+ +++ +|+-..++.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 445789999999999999889999999854443322 23456788998 555 56666688999973223333223
Q ss_pred eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001311 886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 965 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~i 965 (1102)
++.. ..+..|-. |.+|...+.+ .|.+||+++++... .... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12333333 8888777655 79999999865422 2211 1478999999999999988888888
Q ss_pred EEcCCc--------------eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee--EEEeCCCcccCC
Q 001311 966 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1029 (1102)
Q Consensus 966 wd~~~~--------------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~ 1029 (1102)
++.+.. ..+..+ ...|.+.+|..| -++.+. .. .++- +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-------
Confidence 776544 222221 568889999766 344433 33 5665 444433 32222
Q ss_pred CCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1030 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1030 gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
..++ -+.+.++ .+.+.....|+.|..+.+...+
T Consensus 233 ----~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 ----KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ----S--E--EEEEETT-TTEEEEE-TT--EEEEE--HHH
T ss_pred ----CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHHH
Confidence 1244 4455553 4688888899999888775543
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.11 Score=58.84 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=77.2
Q ss_pred EEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc-c
Q 001311 813 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 890 (1102)
Q Consensus 813 ~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~ 890 (1102)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+....+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555555444 56666555433211 22 346799999999 9999999999999999876555555555433 3
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 970 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~ 970 (1102)
.....|.|.-++..++.- ...|.+..... ..+.|.-++..++...-..++|+.-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455677776553333222 22344443221 223444444444444333477776666
Q ss_pred ceEeeee
Q 001311 971 LECVKQW 977 (1102)
Q Consensus 971 ~~~~~~~ 977 (1102)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 5555543
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0014 Score=73.51 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=116.4
Q ss_pred CCCeeEEEEecCCCeEEEEe---CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEE-EEeCCC--cEEEEEe
Q 001311 806 EEAVPCFALSKNDSYVMSAS---GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA-IGMDDS--SIQIYNV 877 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s---dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la-sg~~dg--~v~vwd~ 877 (1102)
...+..-+|+++++.++... .+ .+.++++.+++....+. ..+.-..-+|+| ||+.|+ +...|| .|+++|+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-CCCEEEEEECCCCCccEEEEcC
Confidence 44566678999999877664 23 59999999887665554 344456678999 555554 555666 5666677
Q ss_pred ecceeeeeeccccccceeEEEecCCCEEEEEc-CCCc--EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcE
Q 001311 878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 954 (1102)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 954 (1102)
.++. +..+..-.+.-+.=.|+|||++++-.+ ..|. |.+.+.++... .+ + ...+. .-..-.+||||++
T Consensus 270 ~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~r-i-T~~~~-----~~~~p~~SpdG~~ 339 (425)
T COG0823 270 DGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TR-L-TFSGG-----GNSNPVWSPDGDK 339 (425)
T ss_pred CCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eE-e-eccCC-----CCcCccCCCCCCE
Confidence 7665 344554444444678999999988665 3444 55666666443 11 1 11111 1136789999999
Q ss_pred EEEEe--CCe--EEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311 955 FLVVH--ETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus 955 l~~~~--d~~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
++... +|. |.+.|+.++...+.+. +......-.|.++++.+...+.-
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence 99842 454 7777777666444332 23444566788888887755533
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.48 E-value=0.1 Score=60.09 Aligned_cols=246 Identities=15% Similarity=0.121 Sum_probs=124.5
Q ss_pred eeEEEEecCCCeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 349 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 349 v~~v~~spdg~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
+...++||||++++++-+..| +|+|.|+.+|+.+... +.. ..-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------------------i~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------------------IEN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------------------EEE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------------------ccc--cccceEEEeCCCCEEE
Confidence 346789999998766655555 5999999999776531 111 0122399999999887
Q ss_pred EEECCC-----------eEEEEEccCCceeeeEEEeeccccC--EEEEEEcCCCCeeEEEEecCC--CcEEEEeCCCC--
Q 001311 425 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGDD--KTIKVWDATNG-- 487 (1102)
Q Consensus 425 s~~~d~-----------~v~vwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~d~~~~~l~s~~~d--~~i~vWd~~~~-- 487 (1102)
....+. .|+.|++.++..-. ...+.+.... ...+..++|++.+++.+.+.. ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 765433 37778877664321 1124443333 568889999996333333322 35888888775
Q ss_pred --eeeEEeecCCCCeEEEeeeecCCccEEEEEeC---CCeEEEEEcCCCCCe--e-eecCCCCeeeEEEEccCCceeeec
Q 001311 488 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSR--V-DYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 488 --~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~--~-~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
.....+......+....-+. .+ .+++.... .+.|...++...... . .+..+...
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---------------- 326 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---------------- 326 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS----------------
T ss_pred CcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc----------------
Confidence 23333333333343322222 22 23333322 345655666554321 1 11111110
Q ss_pred cccCceeEEEEcCCCCEEEEE-eC--CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC----CCcEEE
Q 001311 560 FRKRSLGVVQFDTTKNRFLAA-GD--DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKI 632 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i 632 (1102)
..+..+ ...+++|+.. .. ...|+++++..+.....+.... ...|..+...+++..+..... -+++..
T Consensus 327 ---~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 327 ---VSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYR 400 (414)
T ss_dssp ---EEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred ---eeEEEE--EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 011122 2223344443 33 3468889998344444444332 223445554555554443322 256778
Q ss_pred EEccCCc
Q 001311 633 LATSDGI 639 (1102)
Q Consensus 633 wd~~~~~ 639 (1102)
||+.++.
T Consensus 401 ~d~~t~~ 407 (414)
T PF02897_consen 401 YDLATGE 407 (414)
T ss_dssp EETTTTC
T ss_pred EECCCCC
Confidence 8887773
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.45 E-value=0.00012 Score=80.53 Aligned_cols=250 Identities=14% Similarity=0.177 Sum_probs=151.0
Q ss_pred CCeeEEEEecCC--CeEEEEe-CCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEe----CCCcEEEEEe
Q 001311 807 EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYNV 877 (1102)
Q Consensus 807 ~~i~~l~~s~d~--~~las~s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~----~dg~v~vwd~ 877 (1102)
..+.|++...+. -.+++|. +|.|.+-..+...- .....++...+++++|++-|.++||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345666665443 3667777 89888887764332 2335567788999999998888999874 4568999999
Q ss_pred ecc--ee--eeeecc-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-C
Q 001311 878 RVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-D 951 (1102)
Q Consensus 878 ~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d 951 (1102)
.++ .. ...|.+ -.....+++|-.|.+++.+|...+.+.++|+...-..... +++ ..+..+..+| .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnT--------k~vqG~tVdp~~ 207 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNT--------KYVQGITVDPFS 207 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhh--------hhcccceecCCC
Confidence 876 11 122222 2334568899988899999999999999998732111111 111 1456788889 8
Q ss_pred CcEEEEEeCCeEEEEEc-CCce-EeeeeccC--CCCCCeeEEEEcCCCc-EEEEEeCC-CeEEEEEcCC------ceeEE
Q 001311 952 QIHFLVVHETQLAIFET-TKLE-CVKQWVPR--ESSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAAN------LKLRC 1019 (1102)
Q Consensus 952 g~~l~~~~d~~i~iwd~-~~~~-~~~~~~~~--~h~~~v~~l~~spd~~-~l~s~s~D-g~I~vwd~~~------~~~~~ 1019 (1102)
+.|++...|+.|.+||. .+-+ .+...... .-...+..++|+|-.. .+++.+.| ++|+.+|+.. ++...
T Consensus 208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~ 287 (783)
T KOG1008|consen 208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSV 287 (783)
T ss_pred CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccc
Confidence 89999988999999994 2222 11111110 1123589999999543 45555554 7899998742 11111
Q ss_pred EeCCCcccCCCCCC--CcccceEEEecCCC-CCEEEEEecCCcEEEEeccC
Q 001311 1020 RINPSAYLPAGVSS--SNVHPLVIAAHPQE-PNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1020 ~~~~~~~~~~gh~~--~~v~~~~v~f~p~d-~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
.+......+-.|.+ ..|. ...|++.+ -...+++-..-...-+++.+
T Consensus 288 ~~~~~s~~~~q~~~~~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 288 FVNYESKYPVQPNSQCSGID--FFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred eeeeccccccccccccccee--ecCcCcCCccceeEEeeccCChhhccchh
Confidence 11112211222223 2233 56666644 23455555555666666544
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0052 Score=69.12 Aligned_cols=163 Identities=16% Similarity=0.134 Sum_probs=96.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecC---CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
+..-...+..-+|+|+++.+....-.. ..+.++|+++++.....+ -.+.-..-+|||
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fsp 247 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFSP 247 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCCC
Confidence 333566777889999999855553332 359999999887665322 233445678999
Q ss_pred CCCeEEEEE-CCCe--EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCeeeEEe
Q 001311 419 DGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF 493 (1102)
Q Consensus 419 dg~~las~~-~d~~--v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~vWd~~~~~~~~~~ 493 (1102)
||++||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||+. ++++.+..|. |.+.|++.+.. ..+
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~ri 321 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRL 321 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEe
Confidence 999998764 4554 6667887766332 3322333336679999997 3444555554 55556554443 333
Q ss_pred ecCCCCeEEEeeeecCCccEEEEEeC-CCe--EEEEEcCCCC
Q 001311 494 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLG 532 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~ 532 (1102)
.-..+.-..-.| +++|++|+..+. +|. |.+.|+.+..
T Consensus 322 T~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 322 TFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 222221112233 567777777664 344 5555555444
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.44 E-value=0.25 Score=53.55 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=109.4
Q ss_pred EEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEEccCCCeEEEEECC
Q 001311 353 DFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSR 429 (1102)
Q Consensus 353 ~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d 429 (1102)
+|.+||+.||.++..|| .+.+-|+.+++..+. .... .......++|+++.|+-...+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL--------------------Tdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL--------------------TDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC--------------------ccCCCCCccceEEecCCCeEEEEECC
Confidence 57899999888888777 577778888877652 2221 223346778999988877777
Q ss_pred CeEEEEEccCCceeeeEEEeeccccCEEEEEEc--CCCCeeEEEEec----------------------CCCcEEEEeCC
Q 001311 430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLCVITCG----------------------DDKTIKVWDAT 485 (1102)
Q Consensus 430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s--~d~~~~~l~s~~----------------------~d~~i~vWd~~ 485 (1102)
..|+--|+++.+.. .+ +....+.+-...|. .|+. .++..- ..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78999999997643 33 33345555445553 4555 332211 12345666777
Q ss_pred CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC---CC-eEEEEEcCCCCCe-eeec--CCCCeeeEEEEccCCceeee
Q 001311 486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DG-KIKAWLYDNLGSR-VDYE--APGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg-~i~~wd~~~~~~~-~~~~--~~~~~v~~~~~s~~~~~~~~ 558 (1102)
+|+....+. -...+..+.|+|... .+|.-|-. |. .-|||-+++.... ..+. .....+..=-|.+||..++
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~- 253 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW- 253 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE-
T ss_pred CCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE-
Confidence 777655554 445566677765433 34444422 22 1366766653322 2221 1223444456677776322
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 627 (1102)
-....+ ++.+..|.-+|+.+++........ .......++||++++-=+.|
T Consensus 254 --------y~~~~~-------~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 254 --------YDSYTP-------GGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --------EEEEET-------TT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred --------EEeecC-------CCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 111111 123445666777777654333221 23346667888877654443
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.03 Score=65.99 Aligned_cols=204 Identities=14% Similarity=0.076 Sum_probs=110.9
Q ss_pred CCCeeEEEEecCCCcEEEEEe------CCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC-C-----
Q 001311 847 PPAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-S----- 912 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~------~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g----- 912 (1102)
...+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.... .
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4555554 22222222332 37889999999988877533 1
Q ss_pred ------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE---EEcCCceEeee-----ec
Q 001311 913 ------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WV 978 (1102)
Q Consensus 913 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~i---wd~~~~~~~~~-----~~ 978 (1102)
.+.+.+++.++... .....|..+.|||||+.++...++.|++ -....|. ... +.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~ 492 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG 492 (591)
T ss_pred ccCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee
Confidence 22222333322210 1124699999999999999976788887 4544554 111 11
Q ss_pred cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC-ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC
Q 001311 979 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus 979 ~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
.+-...+.++.|..++.++ ++..++...+|.++- |.....+ +.+.....+ ++|+-.+ ..+.....+
T Consensus 493 -~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~------~~~n~~~~v--~~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 493 -PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL------PSRNLSAPV--VAVAASP---STVYVTDAR 559 (591)
T ss_pred -cccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc------CCCCccCce--EEEecCC---ceEEEEcCC
Confidence 1223346889999999965 555555555555432 2211111 111011112 2566555 245555556
Q ss_pred CcEEEEeccCCCcccccCCCCC
Q 001311 1058 GGVHVFEPLESEGKWGVPPPVD 1079 (1102)
Q Consensus 1058 g~v~vW~~~~~~~~~~~~~~~~ 1079 (1102)
|.+.+=.-.+++..|+.-+...
T Consensus 560 g~~~l~~~~~~~~~W~ev~~l~ 581 (591)
T PRK13616 560 AVLQLPNSDSGDQYWREVPGLM 581 (591)
T ss_pred ceEEecCCCCCCCCceECcccc
Confidence 6443332233346777655443
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.065 Score=57.65 Aligned_cols=231 Identities=12% Similarity=0.134 Sum_probs=131.5
Q ss_pred cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCe
Q 001311 749 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 828 (1102)
Q Consensus 749 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~ 828 (1102)
..++.|+.|+++| +.+++.... .+ ... ..+...|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~--------------------~~-~~~-----i~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP--------------------SK-PTR-----ILKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC--------------------cc-cee-----EeecceEEEEEEecccCEEEEEcCCc
Confidence 4567788998888 777765110 00 000 00334499999999999999999999
Q ss_pred EEEEEcCCCceeeee--------------cCCCCCeeEEE--EecCCCcEEEEEeCCCcEEEEEeecc-----eeeeeec
Q 001311 829 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 887 (1102)
Q Consensus 829 I~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~ 887 (1102)
++++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 11222344444 1121445555554 558999888753 3445554
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC------CCCCCCCcEEEEccCCcEEEEEeCC
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR------TPTAQSDTRVQFHQDQIHFLVVHET 961 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~spdg~~l~~~~d~ 961 (1102)
-...+.+++|. ++.|+.+..++ ..+.|+.++..... ....... .....++..+.. +++.+|++- +.
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~ 208 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DN 208 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cc
Confidence 34678899998 55677776555 88899987554221 1111100 000112222233 345655543 33
Q ss_pred eEEEEEcCCceEee--eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 962 QLAIFETTKLECVK--QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 962 ~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.-...|. .|+..+ .+.- ...+.++++ ...||+..+. +.|.||++.++++++.+.
T Consensus 209 ~g~fv~~-~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 209 IGVFVNK-NGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred eEEEEcC-CCCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 2223333 343322 1111 335666666 3457776654 569999999999998877
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.19 Score=56.60 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=156.1
Q ss_pred CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
....+.+.+++..+.... ...+...+.. ...... ..........+++++.+.+..+....+..|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 456677888886555554 2345555554 222222 121113456778888444466666667999999977766655
Q ss_pred eeccccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311 885 KLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 959 (1102)
Q Consensus 885 ~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~ 959 (1102)
...--. .-..++++++++.+..+.. ++++.+.|-.+.+.... ...+.. + ..++++|+|..+.+. .
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~----P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT----P-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC----c-ceEEECCCCCeEEEEecC
Confidence 543222 4567999999977776655 67888888777654322 233322 2 889999999988875 5
Q ss_pred CCeEEEEEcCCceEeeeecc---CCCCCCeeEEEEcCCCcEEEEEeCC---CeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311 960 ETQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus 960 d~~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
++.|.+.|..+....+ ... ..-......+.++|||.++...... +.+.+.|..++.....-... .
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~ 251 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------G 251 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------c
Confidence 8999999987776664 110 1124456788999999977665544 58999999998887652211 1
Q ss_pred CcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001311 1034 SNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1034 ~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~ 1069 (1102)
.. .+..+...| ++..+.+. +..+.+.+-|..+..
T Consensus 252 ~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 252 SG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 11 344688899 46666555 444888888887766
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.28 E-value=0.11 Score=59.68 Aligned_cols=239 Identities=12% Similarity=0.092 Sum_probs=129.0
Q ss_pred eeEEEEecCCCeEEEEe--CC----eEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEeCC-----------C
Q 001311 809 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDD-----------S 870 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s--dg----~I~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~d-----------g 870 (1102)
+..+.+||||+++|.+- .| .|+++|+.+++.+... .. .....+.|.+ |++.|+....+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999999766432 21 1123499999 66655544322 2
Q ss_pred cEEEEEeecceee--eeecccccc--ceeEEEecCCCEEEEEcCC----CcEEEEEcCCC--cccceeeeecCCCCCCCC
Q 001311 871 SIQIYNVRVDEVK--SKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGW--EKQKNRFLQIPTGRTPTA 940 (1102)
Q Consensus 871 ~v~vwd~~~~~~~--~~l~~h~~~--V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~ 940 (1102)
.|+.|.+.+...- ..+...... ...+..++|+++|+..... ..+.+.++..+ .......+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 4778887664322 333333332 4678899999998754322 34677777764 111222222211
Q ss_pred CCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceE---eeeeccCCCCC--CeeEEEEcCCCcEE-EEEeCCC--eEE
Q 001311 941 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVC 1008 (1102)
Q Consensus 941 ~~v~~~~~spdg~~l~~~----~d~~i~iwd~~~~~~---~~~~~~~~h~~--~v~~l~~spd~~~l-~s~s~Dg--~I~ 1008 (1102)
..+....-+.++.+++.. ..+.|...++.+... ...+. .|.. .+..+.. .+.+| +....++ .|+
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 123333333355555443 345777778877652 22333 3344 4555544 34444 4555554 488
Q ss_pred EEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC---CcEEEEeccCCC
Q 001311 1009 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1069 (1102)
Q Consensus 1009 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D---g~v~vW~~~~~~ 1069 (1102)
++++..+.....+. ++.. ..+. .+...+....+.++.++- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99999445554444 2221 1122 455455444555555544 578889998887
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.014 Score=68.69 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=104.4
Q ss_pred CCeeEEEEecCCCeEEEEe-------CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC--------
Q 001311 807 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 869 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-------dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------- 869 (1102)
..+.+.+++|||+.++... |. .|.+++... .. ..+.. ....+.-.|+| ||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887654 32 466666532 22 33321 22378889999 77777666432
Q ss_pred ----CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEE---EEcCCCcccceeeeecCCCCCCCCCC
Q 001311 870 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 942 (1102)
Q Consensus 870 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1102)
+.+++.++..++... ...+.|..+.|||||..++... ++.|.| -....|+...........+-. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234333444433322 2346799999999999988766 467776 444444321111112221111 23
Q ss_pred CcEEEEccCCcEEEEEeCCeEEEE--EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311 943 DTRVQFHQDQIHFLVVHETQLAIF--ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus 943 v~~~~~spdg~~l~~~~d~~i~iw--d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
+..+.|..++.+++...++...+| ++.... ...+........+.+++=+++ -|+....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 578999999997654433333344 444222 122122223556777776653 344455566443
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.098 Score=56.09 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=125.8
Q ss_pred EEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec---
Q 001311 813 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--- 887 (1102)
Q Consensus 813 ~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--- 887 (1102)
.|.++...|.... .+.|.-|+..+++. ..+... +.+.++..-. .+..|+++ +.-+++++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE--ccccEEEeccCCceeEEecccc
Confidence 4566776665555 68899999876543 333322 2334444333 34444443 2346677766555422221
Q ss_pred -c-ccccceeEEEecCCCEEEEEcC-----C----CcEEEEEcCC-CcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311 888 -G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 888 -~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 955 (1102)
+ -...-+.+...|+|.+-++... . ..-.+|-+.. +.. .....++. ..-..++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCEE
Confidence 1 1244567888899988776544 1 1124555542 221 11122111 133689999999888
Q ss_pred EEE--eCCeEEEEEcCC--ceE---eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-eEEEEEcCCceeEEEeCCCccc
Q 001311 956 LVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYL 1027 (1102)
Q Consensus 956 ~~~--~d~~i~iwd~~~--~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~ 1027 (1102)
..+ ..+.|.-|++.. +.. ...+....+.+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+. +
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----l 252 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----L 252 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----C
Confidence 875 447777777652 211 11122223456777888888998886555554 89999988 99999888 4
Q ss_pred CCCCCCCcccceEEEecCCCCCEEEEEec
Q 001311 1028 PAGVSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus 1028 ~~gh~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
|. ..+.+++|--.+.+.|...+.
T Consensus 253 P~------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 253 PV------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CC------CCCccceEeCCCcCEEEEEec
Confidence 42 223378887545555544443
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.23 E-value=0.0073 Score=71.78 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=99.0
Q ss_pred CCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC-eEEEeeeec---CCccEEEEEeCCCeEEEEEcCCCCCeeeecCC
Q 001311 465 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 540 (1102)
Q Consensus 465 ~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~-v~~v~~~~~---~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1102)
++.++|........|+-.|++.|+.+..+..|... |..++-... -+..-.+.|-.+..+..||.+-.+...... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-c
Confidence 34435555566788999999999999999887755 666652110 012346777788999999998643211100 0
Q ss_pred CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE
Q 001311 541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 620 (1102)
Q Consensus 541 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 620 (1102)
+ ..+ .+...+.|++-+.+| +||+|+.+|.||+||--..+....+.+-+ .+|.+|..+.||++
T Consensus 571 ------------~-k~Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 571 ------------S-KQY--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGKW 632 (794)
T ss_pred ------------c-ccc--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCcE
Confidence 0 001 222355566555554 49999999999999954333333444433 47999999999999
Q ss_pred EEEEECCCcEEEEEc
Q 001311 621 LAVSTNDNGIKILAT 635 (1102)
Q Consensus 621 l~~~~~dg~i~iwd~ 635 (1102)
|++.+. ..|.+++.
T Consensus 633 ilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 633 ILATCK-TYLLLIDT 646 (794)
T ss_pred EEEeec-ceEEEEEE
Confidence 997775 57777775
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.19 E-value=0.067 Score=58.93 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCceeeeecCCCC-CeeEE---EEecC---CCcEEEEEeC----------CCcEEEEEeecc----eeeee
Q 001311 827 GKISLFNMMTFKTMATFMPPPP-AATFL---AFHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK 885 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~-~i~~l---~~sp~---d~~~lasg~~----------dg~v~vwd~~~~----~~~~~ 885 (1102)
+.|++.|..+.+.+.++.-... .++++ .|..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888888877766443222 24443 33321 1578888863 289999999884 12222
Q ss_pred e--ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc-ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001311 886 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 961 (1102)
Q Consensus 886 l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~ 961 (1102)
+ ....++|++|+-- +++ |+.+. .+.|.+|++...+ ...... ... ..........+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~---~~~------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF---YDS------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE---E-B------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe---ecc------eEEEEEEeccccEEEEEEccc
Confidence 2 2357889998876 444 44333 4679999998866 222211 111 23444455556688886 456
Q ss_pred eEEEEEcCC-ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311 962 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 962 ~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
.+.++.... ...+..+........++++.|-+|++.++.+..+|.+.++..+
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 666664432 3323333323346678999998777799999999999999876
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.041 Score=55.34 Aligned_cols=250 Identities=12% Similarity=0.155 Sum_probs=129.1
Q ss_pred CCeeEEEEecCCCeEEEEEecCC-eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
..-..|+|+|.-..-++-+-.-| ...++|..+.+.+.... .....-+.||. .|||||.+|..
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vfs~dG~~LYA 130 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VFSPDGRLLYA 130 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------ccCCCCcEEEe
Confidence 34445777777665455555544 46788888876655311 11112355664 69999999987
Q ss_pred EECC-----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC----------------CCcEEEEeC
Q 001311 426 AYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDA 484 (1102)
Q Consensus 426 ~~~d-----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----------------d~~i~vWd~ 484 (1102)
.-+| |.|-|||...+ +....++..|.-.-..+.|.+||+.+.++-|+- .-++.+-|.
T Consensus 131 TEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~ 208 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA 208 (366)
T ss_pred ecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence 6443 78999999853 455567888888888999999999532222211 112344444
Q ss_pred CCCeeeEE--ee--cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeee
Q 001311 485 TNGAKQYI--FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 485 ~~~~~~~~--~~--~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
.+|..+.. +. -+...|..+.. ..||. +..|+. |.-... ..+.-....+..+.-+...++ ...
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~--g~dgt-vwfgcQ------y~G~~~d~ppLvg~~~~g~~l~~~~~pee---~~~ 276 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDI--GRDGT-VWFGCQ------YRGPRNDLPPLVGHFRKGEPLEFLDLPEE---QTA 276 (366)
T ss_pred cccchhhhccCchhhhhcceeeeee--CCCCc-EEEEEE------eeCCCccCCcceeeccCCCcCcccCCCHH---HHH
Confidence 45554432 11 12333444432 23322 222211 100000 000000001111111100000 000
Q ss_pred ccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 634 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 634 (1102)
. -...+.+++.+.+..+++..+ ..+...+||..+|..+..-... .+..++ +...-+++.+.+|.+.++.
T Consensus 277 ~-~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 277 A-FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred H-HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc----ccccce--eccCceEEecCCceEEecc
Confidence 0 012445566665555555544 5667889999999987655422 222333 3344466667788888774
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.12 E-value=0.11 Score=57.17 Aligned_cols=219 Identities=13% Similarity=0.087 Sum_probs=119.6
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE---EEccC----CCeEEEEEC----------CCe
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV---IWSPD----GSLFGVAYS----------RHI 431 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l---~~spd----g~~las~~~----------d~~ 431 (1102)
..|++.|..+.+.+....+.- ...|.++ .|..+ ..+|++|.. .|.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~------------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP------------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET------------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECCC------------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 467888888887776544431 2234433 34433 578887753 288
Q ss_pred EEEEEccCC----ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEee-cCCCCeEEEee
Q 001311 432 VQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCP 505 (1102)
Q Consensus 432 v~vwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~-~h~~~v~~v~~ 505 (1102)
|.++++... ..++.... ....++|++|+-. .+. ++++. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 23333322 2457899999876 343 34433 3689999998887 443222 12235555553
Q ss_pred eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe
Q 001311 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 585 (1102)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 585 (1102)
.. ++++.|...+.|.++.++...... .-++-... ...+.++.+-++++.++.+..+|.
T Consensus 138 --~~--~~I~vgD~~~sv~~~~~~~~~~~l---------~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 138 --FK--NYILVGDAMKSVSLLRYDEENNKL---------ILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp --ET--TEEEEEESSSSEEEEEEETTTE-E---------EEEEEESS----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred --cc--cEEEEEEcccCEEEEEEEccCCEE---------EEEEecCC---------CccEEEEEEecCCcEEEEEcCCCe
Confidence 23 589999888888888665422211 11111111 113344444433357888999999
Q ss_pred EEEEECCC-------c--ceEEEEcCCCCCCCcCeE---EEcC--CC------CEEEEEECCCcEEEEE
Q 001311 586 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILA 634 (1102)
Q Consensus 586 i~iwd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iwd 634 (1102)
+.++.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|-..-
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 99987752 2 22222221211 235555 4444 12 2488888999998543
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.002 Score=71.58 Aligned_cols=94 Identities=17% Similarity=0.370 Sum_probs=73.6
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE-EEEEccCCCeEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG 424 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 424 (1102)
...|.-+.|+|.-. |+|++..+|.|.+..++ .+++.. +.-|...|+ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence 35678899999988 69999999999999887 554442 444566666 999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEc
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 462 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s 462 (1102)
+|-.||+|++-|++++..+... ...-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998866431 22345567777775
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.11 E-value=0.024 Score=67.54 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=97.5
Q ss_pred CCcEEEEE-eCCCcEEEEEeecceeeeeecccccc-ceeEEEec-----CCCEEEEEcCCCcEEEEEcCCCcccceeeee
Q 001311 859 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 931 (1102)
Q Consensus 859 d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 931 (1102)
+.++|+.- .....|+-.|+..|+.+..+..|... |..++-.. +...-+.|-.+..+..||.+-... .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence 44454443 35678999999999999999888754 55443221 123344566677799999875321 1111
Q ss_pred cCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 932 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 932 ~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
.............+++-+.+|...+.+.+|.||+||-- |..-++..+ +-..+|.+|+.+.||+||++.+ +..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 11111122245678888888887777899999999954 333333332 5578999999999999988665 67788877
Q ss_pred c
Q 001311 1012 A 1012 (1102)
Q Consensus 1012 ~ 1012 (1102)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.08 E-value=0.18 Score=54.29 Aligned_cols=223 Identities=13% Similarity=0.139 Sum_probs=125.1
Q ss_pred ecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee--------
Q 001311 815 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-------- 886 (1102)
Q Consensus 815 s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-------- 886 (1102)
...++.|+.|.++.+.+++........... +...|..+...+ +-+.|++-+ |+.++++++..-......
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 346778888884449999983322222222 233399999998 555555443 599999998764333210
Q ss_pred ------ccccccceeEE--EecCC-CEEEEEcCCCcEEEEEcCCCccc---ceeeeecCCCCCCCCCCCcEEEEccCCcE
Q 001311 887 ------KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIH 954 (1102)
Q Consensus 887 ------~~h~~~V~~l~--~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 954 (1102)
......+...+ -...+ ..|+.+ ...+|.+|........ ...-+... ..+..++|. +..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNK 150 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCE
Confidence 01122233333 11233 444444 4558999888764221 11112222 367888888 677
Q ss_pred EEEEeCCeEEEEEcCCceEeeeeccCCC----------CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEE--EeC
Q 001311 955 FLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RIN 1022 (1102)
Q Consensus 955 l~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~--~~~ 1022 (1102)
++++..+...+.|+.++.....+..... ..++..+... ++.+|++- |..-...|. .|+... .+.
T Consensus 151 i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 151 ICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence 7888788899999998776555432211 2234444443 45666643 333333343 443332 222
Q ss_pred CCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1023 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1023 ~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.. ..|.++.+.. .+|+..+. +.|.||++.+++
T Consensus 227 ----W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 ----WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ----cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 11 1244677753 46666554 559999999987
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.17 Score=54.28 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=131.8
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 431 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 431 (1102)
-.|.|++..|+.+.-..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .-
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HG 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--cc
Confidence 35777777778888888999999998775542 11 122334444444555555543 33
Q ss_pred EEEEEccCCceeeeEEEee-cc-ccCEEEEEEcCCCCeeEEEEecC------C---CcEEEEeCC-CCeeeEEeecCCCC
Q 001311 432 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP 499 (1102)
Q Consensus 432 v~vwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~d~~~~~l~s~~~------d---~~i~vWd~~-~~~~~~~~~~h~~~ 499 (1102)
+.+++.+++..+..+.... +. ...-+.+...|+|. +.++.-. + ..-.+|-+. .+..++.+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6677776665433222211 11 13556788899998 3333222 0 112344444 57777777766666
Q ss_pred eEEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 500 VYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
-+.++|++ |++.++.+. ..+.|.-|++...... .... .. ........+..-.++++.+|++.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~---------~~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGP----IGGR-RG---------FVDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCc----cCCc-ce---------EEEccCCCCCCCceEEeCCCCEEE
Confidence 78899854 445555554 4578887877631100 0000 00 011111122333466777777775
Q ss_pred EEeCCC-eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001311 579 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 626 (1102)
Q Consensus 579 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 626 (1102)
++..+| .|.+|+.+ |+.+..+.... ..+.+++|-- +.+.|++.+.
T Consensus 229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 229 AAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 544443 99999998 88888887663 2577788854 5566655544
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0089 Score=65.06 Aligned_cols=150 Identities=12% Similarity=0.126 Sum_probs=96.5
Q ss_pred CeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEE-----EEEeCCCeEEEEEcCCCCCeeeecCC
Q 001311 466 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSRVDYEAP 540 (1102)
Q Consensus 466 ~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-----~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1102)
..+++.++.....++--|++.|+.+..+.-|.. |+-+.+.++..+..+ +.|-.|..|.-||.+-....
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------ 417 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------ 417 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence 334677788888899999999999999987766 555555444433332 34556788999998743321
Q ss_pred CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE
Q 001311 541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 620 (1102)
Q Consensus 541 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 620 (1102)
-+++... ..+ .++..+.|.+-..+| ++++|+.+|.||+||--...-...+++-+. .|..|..+.+|++
T Consensus 418 -----kl~~~q~--kqy--~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKw 485 (644)
T KOG2395|consen 418 -----KLAVVQS--KQY--STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKW 485 (644)
T ss_pred -----eeeeeec--ccc--ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcE
Confidence 0011000 000 112234444444443 699999999999999743333445555544 7999999999999
Q ss_pred EEEEECCCcEEEEEc
Q 001311 621 LAVSTNDNGIKILAT 635 (1102)
Q Consensus 621 l~~~~~dg~i~iwd~ 635 (1102)
|++.+. ..+.+.++
T Consensus 486 il~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 486 ILATCK-TYLLLIDT 499 (644)
T ss_pred EEEecc-cEEEEEEE
Confidence 987664 56666664
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.98 E-value=0.15 Score=56.73 Aligned_cols=91 Identities=19% Similarity=0.304 Sum_probs=61.3
Q ss_pred EEEEccCCCeEEEEECCCeEEE---EEccC-C--ce---eeeEEEeeccc-cCEEEEEEcC-----------CCCeeEEE
Q 001311 413 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSH-----------PNKQLCVI 471 (1102)
Q Consensus 413 ~l~~spdg~~las~~~d~~v~v---wd~~~-~--~~---~~~~~~l~~h~-~~V~~v~~s~-----------d~~~~~l~ 471 (1102)
.++.+|++++||.+..+..+.+ |+... + .. +.-...+.... ..|+++.|-| |.. +++
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~--~I~ 83 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT--CIA 83 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE--EEE
Confidence 4688999999999988887666 64421 1 11 11111122111 4677766543 334 899
Q ss_pred EecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311 472 TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506 (1102)
Q Consensus 472 s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~ 506 (1102)
.|..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus 84 VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 84 VGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 999999999999 6888876666689999988754
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.13 Score=51.85 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=134.5
Q ss_pred eEEEEecCCC-eEEEEe-CCe-EEEEEcCCCceeeeecCCCCC--eeEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001311 810 PCFALSKNDS-YVMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 879 (1102)
Q Consensus 810 ~~l~~s~d~~-~las~s-dg~-I~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 879 (1102)
..|+++|.-. -++.+. -|+ ..++|..+.+...++...++. --.=.||| ||.+|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 4567777544 344444 344 778998887776665433322 12236899 89888765433 6899999875
Q ss_pred c-eeeeeeccccccceeEEEecCCCEEEEEcC------C------------CcEEEEEcCCCcccceeeeecCCCCCCCC
Q 001311 880 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA------D------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 940 (1102)
Q Consensus 880 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 940 (1102)
+ ..+.++..|.-.--.|.|.+||+.|+.+.. | -.+.+.|..+++...+..+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 3 456677777766677999999999998743 1 1233334334433332222211111
Q ss_pred CCCcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceEeeeeccC-----CCCCCeeEEEEcCCCcEEEEEeCC-CeEE
Q 001311 941 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATVC 1008 (1102)
Q Consensus 941 ~~v~~~~~spdg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~D-g~I~ 1008 (1102)
.++..++..+||+.++.+ ..| ---+=....++.+..+... .-...|-+++...+..+++..+-. +...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 367888888998877764 222 1111111222222222111 114467788888777776655544 5678
Q ss_pred EEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEE
Q 001311 1009 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus 1009 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
+||..+|..+.... +++. . .+.-. ..-++..+.+|.+.++
T Consensus 306 i~da~tG~vv~~a~----l~da---a-----Gva~~---~~gf~vssg~G~~~~~ 345 (366)
T COG3490 306 IWDAATGAVVSEAA----LPDA---A-----GVAAA---KGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEcCCCcEEeccc----cccc---c-----cceec---cCceEEecCCceEEec
Confidence 99999999886544 2221 1 22222 2334445668887766
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.81 E-value=2.1 Score=52.24 Aligned_cols=213 Identities=15% Similarity=0.082 Sum_probs=116.0
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeecccc------CEEEEEEcC----------------CCCeeEEEEecCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFSH----------------PNKQLCVITCGDDK 477 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~------~V~~v~~s~----------------d~~~~~l~s~~~d~ 477 (1102)
+..|..++.++.|.-.|.++|+.+-+... ..... ....+++-. ++. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 56677777788888888888876543211 11000 011122211 233 477788899
Q ss_pred cEEEEeCCCCeeeEEeecCCCCeE-------------EEeeeecCCccEEEEEeC----------CCeEEEEEcCCCCCe
Q 001311 478 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR 534 (1102)
Q Consensus 478 ~i~vWd~~~~~~~~~~~~h~~~v~-------------~v~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~ 534 (1102)
.+.-.|.++|+.+..+. ..+.|. .+.-.+--.+..++.|+. +|.|+-+|..+++..
T Consensus 271 ~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999997764 222221 000000001135666642 688999999999988
Q ss_pred eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE------------------eCCCeEEEEECCCcce
Q 001311 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQL 596 (1102)
Q Consensus 535 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~ 596 (1102)
..+.......... ...+. .+.......-...++++..+.++.+ ...+.|.-.|+++|+.
T Consensus 350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 8765321111100 01121 1211111111233444443333321 1245677889999998
Q ss_pred EEEEcCCCCC-------CCcCeEEEcC-CCC---EEEEEECCCcEEEEEccCCc
Q 001311 597 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 597 ~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~ 639 (1102)
...++...|. ....-+.+.. +|+ .++.++.+|.+.++|.++++
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 8887653221 0011122322 553 78999999999999999994
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.76 E-value=0.0027 Score=43.63 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.3
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0057 Score=68.08 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee-EEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
...+.-+.|+|.-..+|.+. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999988 888899987777777 999999 8999999999999999999998766
Q ss_pred eee-ccccccceeEEEe
Q 001311 884 SKL-KGHSKRITGLAFS 899 (1102)
Q Consensus 884 ~~l-~~h~~~V~~l~~s 899 (1102)
... -.-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2234567777775
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.72 E-value=0.99 Score=48.18 Aligned_cols=159 Identities=11% Similarity=0.067 Sum_probs=80.1
Q ss_pred cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcC-CC
Q 001311 844 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GW 922 (1102)
Q Consensus 844 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~ 922 (1102)
..-.+.+..+..++ |+++++++..-....-||-....-...-..-+.+|.+|.|.||+.+.+.+ ..|.|+.=+.. ..
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788888888 99999887655455567643211111122245789999999998776654 78888877622 11
Q ss_pred cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeec-cCCCCCCeeEEEEcCCCcEEEEE
Q 001311 923 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
+.-......... ....+..++|.+++...+++..|.+. ...+.|+--..-. ...-....+.+.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 219 ETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 110000011111 11347899999999998888877553 3444444322211 11224568889998776666655
Q ss_pred eCCCeEEEE
Q 001311 1002 FLDATVCVF 1010 (1102)
Q Consensus 1002 s~Dg~I~vw 1010 (1102)
.||.|--|
T Consensus 294 -~~G~ll~~ 301 (302)
T PF14870_consen 294 -QDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred -CCcEEEEe
Confidence 68887655
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.021 Score=67.66 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=79.2
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
-+..+|.|+..|.|-..|+.+. +++...-..-.++|++++|+.||+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999999998774 222111222357999999999999 788899999999999999999999988888
Q ss_pred CeEEEeeee-cCCccEEEEEeCCCeEEEEEc
Q 001311 499 PVYSVCPHH-KENIQFIFSTALDGKIKAWLY 528 (1102)
Q Consensus 499 ~v~~v~~~~-~~~~~~l~s~s~dg~i~~wd~ 528 (1102)
+.+++-++. ..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775433 333446777777776 4654
No 385
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.63 E-value=0.94 Score=49.85 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=58.7
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC----CCeE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF 423 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 423 (1102)
..++|+|.|||+ +++ +...|.|++.+ ..+..... +. + ...+..........++|+|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~~--v~--~--------~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKTP--VA--D--------LPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECEE--EE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcce--ec--c--------cccccccccCCcccceeccccCCCCEEE
Confidence 568999999998 354 46689999999 44543110 00 0 01234555678899999994 4444
Q ss_pred EEEECC--------CeEEEEEccCC-cee---eeEE-Eeec---cccCEEEEEEcCCCCeeEEEEec
Q 001311 424 GVAYSR--------HIVQIYSYHGG-DEV---RQHL-EIDA---HVGGVNDIAFSHPNKQLCVITCG 474 (1102)
Q Consensus 424 as~~~d--------~~v~vwd~~~~-~~~---~~~~-~l~~---h~~~V~~v~~s~d~~~~~l~s~~ 474 (1102)
++.+.. ..|.-|....+ ..+ +.+. .+.. ....-..|+|.|||. +++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 443321 24555555544 111 1111 1121 233456799999996 3444443
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.61 E-value=0.23 Score=50.87 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=117.9
Q ss_pred eeEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeeeecccc-ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccc
Q 001311 850 ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~ 926 (1102)
...+.|.. ++.++-+.+.-| .|+.+|+.+++......-.. ----.++...| +...-.=.++...+||..+-+...
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 56788866 788888888777 89999999988765443211 11123444422 333334467889999998865543
Q ss_pred eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCC---CeeEEEEcCCCcEEEEEe
Q 001311 927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~spd~~~l~s~s 1002 (1102)
.... . + .=..++ .||+.|+.+ ....++.+|..+.+..+.+....... .++-+.|- +|...|=.=
T Consensus 125 ~~~y--~-~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 125 TFPY--P-G------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp EEE---S-S------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred EEec--C-C------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 3222 1 1 114444 677777775 67789999999888877765433333 45556665 777777666
Q ss_pred CCCeEEEEEcCCceeEEEeCCCcccCCCC-------CCCcccceEEEecCCCCCEEEEEe
Q 001311 1003 LDATVCVFSAANLKLRCRINPSAYLPAGV-------SSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 1003 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh-------~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
....|..-|..+|+.+..+..+...+... .....+ .|+|.|..+.+++||=
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTGK 250 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEeC
Confidence 67778888999999999887555443210 012234 8999998777888873
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.47 Score=48.66 Aligned_cols=198 Identities=14% Similarity=0.188 Sum_probs=121.2
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc-ccCCCCCCCCeeEEEEec
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~l~~s~ 816 (1102)
-...+.++.|+|+.+.|++..+.....||=- .+|.++.. .+.+ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEec
Confidence 4455999999999999999988766555421 33443332 2222 33456678888
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeec---------CC-CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---e
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFM---------PP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V 882 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~---------~~-~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~ 882 (1102)
+|+++++-. ++.+.++.+.....+..+. .+ ......++|+| ....|..+-+-.-+.||.+.... .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887776 7888888876543322111 12 45678899999 56666667777777777765322 1
Q ss_pred eeeeccc-------cccceeEEEecC-CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC---CCCCCcEEEEccC
Q 001311 883 KSKLKGH-------SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP---TAQSDTRVQFHQD 951 (1102)
Q Consensus 883 ~~~l~~h-------~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~spd 951 (1102)
......+ -..|.++.|.+. +.+||-+.+++.+.-.|....-. ..+....|... .......+++.++
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECCC
Confidence 1111122 234677888754 56777777888888888766432 12222222221 1123467888888
Q ss_pred CcEEEEEeCCeEE
Q 001311 952 QIHFLVVHETQLA 964 (1102)
Q Consensus 952 g~~l~~~~d~~i~ 964 (1102)
|...+++.-+..+
T Consensus 295 g~lYIvSEPnlfy 307 (316)
T COG3204 295 GNLYIVSEPNLFY 307 (316)
T ss_pred CCEEEEecCCcce
Confidence 8877776544333
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.072 Score=58.36 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=98.8
Q ss_pred EEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCE--E-----EEEcCCCcEEEEEcCCCcccceeeeecCC
Q 001311 862 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIPT 934 (1102)
Q Consensus 862 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 934 (1102)
+|..+..-..++--|++.|+.+..++-|.. |+-+.+.|+.+. | +.|-.|..|+-||..-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 445556666888889999999999998877 888888887532 2 23445777999998743221 233333
Q ss_pred CCCC-CCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311 935 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 935 ~~~~-~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
++.- ....-.+.+-..+|..++.+.+|.|++||- .+...++..+ +-..+|..+..+.||++|+..+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3321 113345666666777666679999999998 5555444432 5688999999999999988665 666666664
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.52 E-value=1 Score=50.21 Aligned_cols=40 Identities=10% Similarity=-0.130 Sum_probs=34.4
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
...+.+++.+|++++.|+...=|.|.++|+.++..++.++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 4568899999999988888777999999999998877665
No 390
>PHA02713 hypothetical protein; Provisional
Probab=96.46 E-value=0.27 Score=58.35 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=113.5
Q ss_pred eEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCC------CcEEEEEeeccee--eeeeccccccceeEE
Q 001311 828 KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV--KSKLKGHSKRITGLA 897 (1102)
Q Consensus 828 ~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~~--~~~l~~h~~~V~~l~ 897 (1102)
.+..||..+.+-. ..+..... -.+++. - ++.++++|+.+ ..+..||..++.- +..+....... .+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 4667777664322 12221111 122333 2 67788888854 3577888776532 22222111111 22
Q ss_pred EecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC-----------
Q 001311 898 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------- 960 (1102)
Q Consensus 898 ~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d----------- 960 (1102)
..-+|+..+.||.++ ++..||..+.+- .......... ..... ..-+|+..+.| .+
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W---~~~~~mp~~r---~~~~~--~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKW---KMLPDMPIAL---SSYGM--CVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeE---EECCCCCccc---ccccE--EEECCEEEEEeCCCccccccccccc
Confidence 233778888888764 378899876432 2211111110 01111 22356666664 22
Q ss_pred ------------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC------CeEEEEEcCC-ceeEEEe
Q 001311 961 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1021 (1102)
Q Consensus 961 ------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D------g~I~vwd~~~-~~~~~~~ 1021 (1102)
..+..||..+.+....-... ......-+..-+|+..+.|+.+ ..|..||.++ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 35778998887654332211 1111111223367777777754 2467898887 4332211
Q ss_pred CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC--cEEEEeccCCCcccccCCC
Q 001311 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus 1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg--~v~vW~~~~~~~~~~~~~~ 1077 (1102)
. ++.. ....+++-. ++.+.++|+.|| ++..+|+.+.+ |..-.|
T Consensus 498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~ 542 (557)
T PHA02713 498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICH 542 (557)
T ss_pred c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhh
Confidence 1 2211 111122222 578999999998 78888887766 666554
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.45 E-value=0.19 Score=43.76 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=66.4
Q ss_pred eEEEEEcc-CC---CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 411 VNRVIWSP-DG---SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 411 V~~l~~sp-dg---~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
|++|++.. || +.|++|+.|..|+||+-+. .+. ++. -.+.|++++-...++ ++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence 66777766 33 5899999999999998654 333 233 246788888777654 888889999999973
Q ss_pred CeeeEEeecCCCCeEEEee-eecCCc-cEEEEEeCCCeEE
Q 001311 487 GAKQYIFEGHEAPVYSVCP-HHKENI-QFIFSTALDGKIK 524 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~-~~~~~~-~~l~s~s~dg~i~ 524 (1102)
...+...+... .+.++++ ....+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33344444322 3555553 223222 2578887778763
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.42 E-value=1.3 Score=45.67 Aligned_cols=186 Identities=9% Similarity=0.116 Sum_probs=114.4
Q ss_pred CCeeEEEEecCCCeEEEEe-C--CeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311 807 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-d--g~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 882 (1102)
.-...+.|..+|.++-+.+ - ..|+.+|+.+++......-... --..++.. ++++....-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3356788878888777766 3 4699999999987765442222 12344444 456677777899999999999888
Q ss_pred eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001311 883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 961 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~ 961 (1102)
+.++.- .+.=+.|+ .|++.|+..+....|.++|.++.+..+. +.+.....+ -..+.-+-+- +|...|-. ...
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGRP-VSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTEE----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCC
Confidence 888753 35567777 4677777776677799999887654332 222221111 1123344443 56655554 677
Q ss_pred eEEEEEcCCceEeeeeccC----------CC---CCCeeEEEEcCCCcEE-EEE
Q 001311 962 QLAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLV-YAC 1001 (1102)
Q Consensus 962 ~i~iwd~~~~~~~~~~~~~----------~h---~~~v~~l~~spd~~~l-~s~ 1001 (1102)
.|...|..+|+.+..+... .+ ..-.+.||+.|+...| +||
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8888999999988765321 01 3457899998866655 454
No 393
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.40 E-value=2.3 Score=47.64 Aligned_cols=289 Identities=13% Similarity=0.098 Sum_probs=153.2
Q ss_pred CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-----CCCeEEEEe
Q 001311 751 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS 825 (1102)
Q Consensus 751 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-----d~~~las~s 825 (1102)
...+++|+..|.++||+.....+.+..-.+.. .-..+|..+.... +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEec
Confidence 35688999999999998744333222111111 1345566555432 344666666
Q ss_pred CCeEEEEEcCC--Cc-------eeeeecCCCC--CeeEEEEecC----CCcEEEEEeCCCcEEEEEeecceeeeeecccc
Q 001311 826 GGKISLFNMMT--FK-------TMATFMPPPP--AATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 890 (1102)
Q Consensus 826 dg~I~iwd~~~--~~-------~~~~~~~~~~--~i~~l~~sp~----d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 890 (1102)
-..+.||.+.. +. .+..+..|.- ....+++-|- +..+|.+-+-||.+.+|+-+.......+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 77788887631 11 1122222321 2222333221 246888999999999999776544444443 2
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee-------eecCCCCCC----------CCCCCcEEEEccCCc
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------LQIPTGRTP----------TAQSDTRVQFHQDQI 953 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~----------~~~~v~~~~~spdg~ 953 (1102)
---..++|.+.-..+++++.+..+..|....-....... .....+... ..-.+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 222347888888999999999889888753210000000 000000000 001122233333444
Q ss_pred EEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEE-E----cCCC---cEEEEEeCCCeEEEEEcCCceeEEEeCCCc
Q 001311 954 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT-F----SCDS---QLVYACFLDATVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus 954 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~-~----spd~---~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
.+++-.+..+...+- +|......+.+. ...+++ | ..++ ..++.++.++++.||.=.+ ++-.-.
T Consensus 255 ~IvvLger~Lf~l~~-~G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~--- 325 (418)
T PF14727_consen 255 DIVVLGERSLFCLKD-NGSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQ--- 325 (418)
T ss_pred eEEEEecceEEEEcC-CCeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecC---
Confidence 455556667777665 345544443322 222221 1 1222 2478889999999987433 332222
Q ss_pred ccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCC
Q 001311 1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP 1076 (1102)
Q Consensus 1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~ 1076 (1102)
++.. .| .+.++..++-...|++-+.+|.+.+-=+-|.......++
T Consensus 326 -l~~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~ 370 (418)
T PF14727_consen 326 -LPHV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPP 370 (418)
T ss_pred -CCCC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCC
Confidence 1111 02 223333333456899999999999998877664444433
No 394
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=96.33 E-value=0.0028 Score=58.67 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=64.5
Q ss_pred hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC----chhHH---HHHH
Q 001311 60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----TKSAR---SIML 132 (1102)
Q Consensus 60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~~~~R---~~l~ 132 (1102)
++|+|+.+.||||+..|..++|..++.+.-..+...+.+++++|+.+.+..++.+++....+++ ...+| ..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999998766666668999999999999998888887776665 23344 5666
Q ss_pred HHHHh
Q 001311 133 VELKK 137 (1102)
Q Consensus 133 ~~l~~ 137 (1102)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 66665
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.32 E-value=0.0076 Score=41.25 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.0
Q ss_pred ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311 838 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 876 (1102)
Q Consensus 838 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 876 (1102)
+....+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566777888999999999 779999999999999996
No 396
>PRK10115 protease 2; Provisional
Probab=96.31 E-value=2.5 Score=51.56 Aligned_cols=195 Identities=10% Similarity=0.045 Sum_probs=101.1
Q ss_pred CCeeEEEEecCCCeEEEEeC--C----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC------CcEEE
Q 001311 807 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQI 874 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~sd--g----~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~v 874 (1102)
-.+..+.++||+++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998763 3 48999998876432221111 14599999 66655544332 36888
Q ss_pred EEeecc--eeeeeeccccccce-eEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEE
Q 001311 875 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 948 (1102)
Q Consensus 875 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 948 (1102)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+++...........+....+ ....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence 888876 33333333222222 3344558887764433 4568888853311111111111111 112222
Q ss_pred ccCCcEEEEEeC----CeEEEEEcCC-ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311 949 HQDQIHFLVVHE----TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 949 spdg~~l~~~~d----~~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
+..+.+.+.... ..|...++.+ ++. ..+........|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333321 2344445442 222 223322123478888887 44566677778776665544
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.30 E-value=0.25 Score=42.99 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=47.5
Q ss_pred EEEEEE---cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311 456 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528 (1102)
Q Consensus 456 V~~v~~---s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~ 528 (1102)
|+++++ ..||.. -|+.|+.|..||||+ ....+..+. ....|.+++-. .. ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~--~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSL--GG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEc--CC-CEEEEEecCCEEEEEeC
Confidence 455554 445555 799999999999997 446777776 44567777632 22 57899999999988854
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.27 E-value=1.5 Score=48.15 Aligned_cols=241 Identities=14% Similarity=0.120 Sum_probs=119.9
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce---eeee----cCCCCCeeEEEEecC---CCcEEEEEeCC--------
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 869 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d-------- 869 (1102)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 36789999999888876699999999 33333 2222 223456889999992 23434433321
Q ss_pred CcEEEEEeecc-------e-eeeeecc---ccccceeEEEecCCCEEEEEcCCCc-------------EEEEEcCCCccc
Q 001311 870 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQ-------------LCVWSSDGWEKQ 925 (1102)
Q Consensus 870 g~v~vwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~-------------i~vwd~~~~~~~ 925 (1102)
..|.-|....+ + ++..+.. ....-..|+|.|||.+.++.+..+. |.-.+....-..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24444444433 1 1112221 1223356999999988887765443 221222110000
Q ss_pred ce--------eeeecCCCCCCCCCCCcEEEEccC-CcEEEE--EeCCeEEEEEcCCceEe--------------------
Q 001311 926 KN--------RFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV-------------------- 974 (1102)
Q Consensus 926 ~~--------~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~--~~d~~i~iwd~~~~~~~-------------------- 974 (1102)
.. .......|+ .....++|+|. |.+.++ +.+..=.|..+..|.-.
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00 000000011 13467899999 777776 34433333333332210
Q ss_pred -------eeeccCCCCCCeeEEEEcC-------CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceE
Q 001311 975 -------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus 975 -------~~~~~~~h~~~v~~l~~sp-------d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
..+.. .+...+..+.|-. .|.++++.-..+.|....++++..+.... .++ . .....++.
T Consensus 238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~ 310 (331)
T PF07995_consen 238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRD 310 (331)
T ss_dssp S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEE
T ss_pred CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceE
Confidence 00001 1235667777753 45566666666788888887553332222 111 1 11124668
Q ss_pred EEecCCCCCEEEEEecCCcEE
Q 001311 1041 IAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus 1041 v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
+++.| ||.+.++...+|.|+
T Consensus 311 v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEET-TSEEEEEE-TTTTEE
T ss_pred EEEcC-CCeEEEEECCCCeEe
Confidence 99999 688888888888774
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.26 E-value=2.9 Score=47.34 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=44.1
Q ss_pred EEEecCCCEEEEEcCC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 896 LAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 896 l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
|+|.|..+.+|.++.- ..|.||.+........+.++...+.. ...++|-.|...|+.
T Consensus 344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ER-----PKGiCFltdklLLil 401 (671)
T PF15390_consen 344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNER-----PKGICFLTDKLLLIL 401 (671)
T ss_pred eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCC-----CceeeEccCCeEEEE
Confidence 7999999999999875 46889999876666666666666543 478999888887775
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=0.52 Score=51.58 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=95.5
Q ss_pred EEEEecCCCeEEEEe---C----CeEEEEEcCCCceeeeecCCC---CCeeEEEEecCCCcEEEEEe-------------
Q 001311 811 CFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGM------------- 867 (1102)
Q Consensus 811 ~l~~s~d~~~las~s---d----g~I~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~lasg~------------- 867 (1102)
.+-.-|+|++++++- + |.+.+.|-++.+......... .--..+-|.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 344557898888762 2 568899988887776654322 2345567778 677777654
Q ss_pred -------CCCcEEEEEeecceeeeeecccc--ccceeEEEecC--CCE-EEEEcCCCcEEEE-EcCCCcccceeeeecCC
Q 001311 868 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVW-SSDGWEKQKNRFLQIPT 934 (1102)
Q Consensus 868 -------~dg~v~vwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~i~vw-d~~~~~~~~~~~~~~~~ 934 (1102)
...++.+||+.+.+.++++.--. .....|.|.++ ..+ ++.+.-..+|..| .-+.++-....++.+..
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 23589999999999998885432 23556777655 333 3333344445444 32444443444444433
Q ss_pred CCC-------------CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc---eEeeeeccCCC--------------
Q 001311 935 GRT-------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRES-------------- 982 (1102)
Q Consensus 935 ~~~-------------~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~---~~~~~~~~~~h-------------- 982 (1102)
... ..+.-|+.+.+|.|.++|.++ .+|.|+.||+..- +.+..+...+-
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 210 012457999999999999995 7999999999763 33333332221
Q ss_pred CCCeeEEEEcCCCcEEEEEe
Q 001311 983 SAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s 1002 (1102)
.+...-+..|-||+.|...+
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 23347788999999987655
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.23 E-value=0.6 Score=55.27 Aligned_cols=234 Identities=9% Similarity=0.074 Sum_probs=129.4
Q ss_pred cCCCeEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC-C-----cEEEEEeecc
Q 001311 816 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD 880 (1102)
Q Consensus 816 ~d~~~las~s-d------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-g-----~v~vwd~~~~ 880 (1102)
..+..++.|+ + ..+..+|..+.+-... +. ....-.++++. ++.+.++|+.| | .+..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3445566665 4 3588888877643222 22 22234455555 57889999998 3 6778887765
Q ss_pred e--eeeeeccccccceeEEEecCCCEEEEEcCCCc-----EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311 881 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 953 (1102)
Q Consensus 881 ~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 953 (1102)
+ .+..+........... -+|...|+||.||. |-.||..+.+-......... .-..-...-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 4 2233332222222222 27888999999964 77787776442111111110 112223334666
Q ss_pred EEEEE-eC------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeEEEe
Q 001311 954 HFLVV-HE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 954 ~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~ 1021 (1102)
..++| .+ ..+..||..+++....-.... ...-..++ .-++.+.+.|+.|+ +|..||..+.+-...-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 66663 23 368899998877654433211 11112233 23778888888776 3788888877654321
Q ss_pred CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC-----cEEEEeccCCCcccccCCC
Q 001311 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus 1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1077 (1102)
. +... .....++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 508 ~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 P----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred c----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1 2211 111122222 578889999887 68888887766 554433
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.19 E-value=0.7 Score=48.52 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=89.0
Q ss_pred CeeEEEEecCCCeEEEEe--CCe--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE-eeccee
Q 001311 808 AVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDEV 882 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s--dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-~~~~~~ 882 (1102)
.+.+.++++|++.+|... ++. ++++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887765 444 5555443 3333322 223688889999 677777777677777774 233322
Q ss_pred ee-eecc--ccccceeEEEecCCCEEEEEc---CCCcEEEEEcCCCccc----ceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 883 KS-KLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ----KNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 883 ~~-~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
.. .+.. -.+.|+++.+||||..+|... .++.|.|=-+...... .......... ....+..+.|.+++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDS 177 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCC
Confidence 21 1111 112899999999999888665 3566776655432221 1111111111 12478899999999
Q ss_pred cEEEEE
Q 001311 953 IHFLVV 958 (1102)
Q Consensus 953 ~~l~~~ 958 (1102)
.+++.+
T Consensus 178 ~L~V~~ 183 (253)
T PF10647_consen 178 TLVVLG 183 (253)
T ss_pred EEEEEe
Confidence 988874
No 403
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.021 Score=60.41 Aligned_cols=102 Identities=10% Similarity=0.143 Sum_probs=82.8
Q ss_pred hhHHhHHHHHHHHhhhcCCCcc----------HHHHHHHHhcCCHHHHHHHhccc-ccccCccccchhhHHHHHhHhHHH
Q 001311 4 SSKKLFTSKHFLLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEA 72 (1102)
Q Consensus 4 ~~~~g~~~s~~~l~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~~~El 72 (1102)
++.+|....+..|-+|+|...+ +.+.-+++.+|+-+-|++.+..- ..+.+.. +. +.|.+..+.|+++
T Consensus 127 ~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s~-LE~~Lh~l~fl~l 204 (394)
T KOG2817|consen 127 FYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-SS-LEFKLHSLHFLSL 204 (394)
T ss_pred HHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-cc-HHHHHHHHHHHHH
Confidence 5678999999999999999862 78889999999999999988763 2333322 23 7899999999999
Q ss_pred hcCCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 73 LDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 73 l~~~~~~--~a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
+..|... +|++..|+.++||...+...++.|-.+|
T Consensus 205 ~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 205 IRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 9999988 9999999999999776655666665444
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.14 E-value=0.29 Score=58.07 Aligned_cols=188 Identities=10% Similarity=0.062 Sum_probs=97.6
Q ss_pred cCCCeEEEEe-C------CeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecce
Q 001311 816 KNDSYVMSAS-G------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 881 (1102)
Q Consensus 816 ~d~~~las~s-d------g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~ 881 (1102)
-++..++.|+ + ..+..||..+..-. ..+....... +++. - ++++.+.|+.++ .+..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3666666665 3 24778887765321 1121111112 2222 2 678888898764 48889987643
Q ss_pred --eeeeeccccccceeEEEecCCCEEEEEcCCC-----------------------cEEEEEcCCCcccceeeeecCCCC
Q 001311 882 --VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR 936 (1102)
Q Consensus 882 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~ 936 (1102)
.+..+.........+ .-+|+..+.||.++ .+..||..+.+-. .+......
T Consensus 379 W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~---~v~~m~~~ 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE---TLPNFWTG 453 (557)
T ss_pred EEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---ecCCCCcc
Confidence 333332222222222 23678888887653 3667777764422 11111110
Q ss_pred CCCCCCCcEEEEccCCcEEEEE-eC------CeEEEEEcCC-ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC--e
Q 001311 937 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1006 (1102)
Q Consensus 937 ~~~~~~v~~~~~spdg~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg--~ 1006 (1102)
.....+..-+|+..++| .+ ..+..||..+ .+....-...........+.+ +|+..++|+.|| .
T Consensus 454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 11111223345555554 32 2467899987 554433222122222223333 788999999888 6
Q ss_pred EEEEEcCCceeE
Q 001311 1007 VCVFSAANLKLR 1018 (1102)
Q Consensus 1007 I~vwd~~~~~~~ 1018 (1102)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 777887776443
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.06 E-value=0.13 Score=57.47 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCeeEEEEecCCCcEEEEEe--CCCcEEEEEeecceeeeeeccccccceeEEEecC----CCEEEEEcCCCcEEEEEcC
Q 001311 847 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~ 920 (1102)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+.+| ..|.+++|+|- -..|...-.-..|.||-+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34688899984 333444332 344444322 2233443 45889999985 3344455566789999987
Q ss_pred CCc--ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeE-EEEEcCC--ceEeeeeccCCCCCCeeEEEEcCCC
Q 001311 921 GWE--KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL-AIFETTK--LECVKQWVPRESSAPITHATFSCDS 995 (1102)
Q Consensus 921 ~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i-~iwd~~~--~~~~~~~~~~~h~~~v~~l~~spd~ 995 (1102)
... ..+...-+..+-..+.+--...+.|+|....|++-....+ .++++.. .+....+. ..+.|.|.||.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence 322 2222222222111111122367899999999988433323 3444433 33333332 26789999999999
Q ss_pred cEEEEEeCC-CeEEEEEcCCc
Q 001311 996 QLVYACFLD-ATVCVFSAANL 1015 (1102)
Q Consensus 996 ~~l~s~s~D-g~I~vwd~~~~ 1015 (1102)
..|+.+-.. =.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 988766433 34789986544
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.95 E-value=0.44 Score=50.05 Aligned_cols=149 Identities=15% Similarity=0.025 Sum_probs=89.0
Q ss_pred CeeEEEEecCCCcEEEEEe---CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE-cCCCcc
Q 001311 849 AATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEK 924 (1102)
Q Consensus 849 ~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd-~~~~~~ 924 (1102)
.+...++++ +++.+|... ....++++. .+.....+. -...++.-.|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 677665544 333555554 333333321 223688889999987777777677677774 233222
Q ss_pred cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcC---Cc--eEe-eeecc-CCCCCCeeEEEEcC
Q 001311 925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFSC 993 (1102)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----d~~i~iwd~~---~~--~~~-~~~~~-~~h~~~v~~l~~sp 993 (1102)
. ...+...... ..|..+.+||||..++... ++.|.+--+. .+ ..+ ..... ......+.++.|.+
T Consensus 101 ~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 E-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred e-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 1 1112221110 1689999999999999843 5677766543 22 111 00111 12256899999999
Q ss_pred CCcEEEEEeCCCe
Q 001311 994 DSQLVYACFLDAT 1006 (1102)
Q Consensus 994 d~~~l~s~s~Dg~ 1006 (1102)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9998876665443
No 407
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.91 E-value=2.5 Score=47.37 Aligned_cols=198 Identities=11% Similarity=0.087 Sum_probs=105.5
Q ss_pred CCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccc-
Q 001311 702 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT- 780 (1102)
Q Consensus 702 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~- 780 (1102)
...+.+-+.||.+.+++-+.......+..+.+|+ .++|.+....+++++.+..+.-|....-....+....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg--------Pl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG--------PLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc--------CeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 5678888999999999877644322222222222 4678888888999999988988876432111111000
Q ss_pred ---------ccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCee
Q 001311 781 ---------ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 851 (1102)
Q Consensus 781 ---------~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~ 851 (1102)
...-..-|...-|+.. -.|..+.++.....+++-+..++.+.+.. |......+-.-.+..
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~~----------l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~ 285 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQA----------LDIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSC 285 (418)
T ss_pred ccccccccccccccceeEEECCcee----------EEEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEecCCceee
Confidence 0000112333222211 11222333334445566666777777753 444333332112222
Q ss_pred EEEEe------cCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEe---cCCCEEEEEcCCCcEEEEEcCC
Q 001311 852 FLAFH------PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 852 ~l~~s------p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
...|. +..+..+++++.++++.||.=. +++...+....+| +|... .-...|++-+.+|.+.+-=+.+
T Consensus 286 ~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 286 FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 22221 2112358889999999999733 3333333222332 33322 2345888899999998876655
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=1.4 Score=45.46 Aligned_cols=170 Identities=7% Similarity=0.051 Sum_probs=113.0
Q ss_pred eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001311 886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 964 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~ 964 (1102)
+.+-...|.++.|+|+.+.|++......-.||=-..|+..+..++.... ....+.+..+|++.++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3444455999999999999999888887777766666665554444332 34678888999998885 788888
Q ss_pred EEEcCCceEeee-----ecc--CCC-CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCC---
Q 001311 965 IFETTKLECVKQ-----WVP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS--- 1033 (1102)
Q Consensus 965 iwd~~~~~~~~~-----~~~--~~h-~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~--- 1033 (1102)
++.++.+..+.. +.. ..+ ....-.++|+|.+..|..+-+-.-+.||.+..+..-.... ....+..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 888766532221 111 122 5567789999999999999888878887765332111111 0111111
Q ss_pred ---CcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1034 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1034 ---~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
..+. ++.|.+..+.+||-+..++.|...|....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1133 78888877888888888888877777544
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.88 E-value=6.6 Score=48.11 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=70.1
Q ss_pred EEEEecCCCcEEEEeCCCCeeeEEeecCCCC--------eEEEeeeec--------------CCccEEEEEeCCCeEEEE
Q 001311 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP--------VYSVCPHHK--------------ENIQFIFSTALDGKIKAW 526 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~--------v~~v~~~~~--------------~~~~~l~s~s~dg~i~~w 526 (1102)
.++.++.++.|.-.|..+|+.+.++...... ...+.+... ..+..++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 3666666778888888888888776532211 112222211 123478889999999999
Q ss_pred EcCCCCCeeeecCCCCeee--EEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCc
Q 001311 527 LYDNLGSRVDYEAPGRWCT--TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSV 594 (1102)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~ 594 (1102)
|.++++.+..+......-. .+.-.+.+.. ..+..++ + .++.++.++. +|.|+-+|.++|
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~---~~ts~P~----V--~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYY---YPTSPPL----V--AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCccc---ccccCCE----E--ECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 9999888776543221100 0000011100 0000000 0 0234555532 689999999999
Q ss_pred ceEEEEcC
Q 001311 595 QLLTSIDA 602 (1102)
Q Consensus 595 ~~~~~~~~ 602 (1102)
+.+..+..
T Consensus 347 kl~W~~~~ 354 (764)
T TIGR03074 347 ALVWAWDP 354 (764)
T ss_pred cEeeEEec
Confidence 99988763
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.79 E-value=0.031 Score=40.33 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.5
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 441 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~ 441 (1102)
...|.+++|||...+||.|+.||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 411
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=0.031 Score=54.69 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCeEEEEe-CCeEEEEEcCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-ccce
Q 001311 818 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 894 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 894 (1102)
+..+++|. +|.|++|+..-. .....+..-...|.++.-.-+++.+..++..||.||.|++.-++.+.....|. ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566666 999999987622 11111222223344443333366799999999999999999888888877787 6666
Q ss_pred eEEEecCCCEEEEE--cCCCcEEEEEcCC
Q 001311 895 GLAFSHALNVLVSS--GADSQLCVWSSDG 921 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~--s~Dg~i~vwd~~~ 921 (1102)
.+..+..++.++++ |.|..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 67777777777777 7788888888765
No 412
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.036 Score=65.80 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=70.9
Q ss_pred EEEEEecCCeEEEEeCCCCee-EEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccC
Q 001311 361 LLLVGTNVGDIGLWEVGSRER-LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 439 (1102)
Q Consensus 361 llasg~~d~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~ 439 (1102)
.++.|+..|.|...|+...-. .+ --..-.++|++++|+.||++++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-------------------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-------------------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-------------------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 488888888998888765311 11 0122357999999999999999999999999999999
Q ss_pred CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311 440 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 485 (1102)
Q Consensus 440 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~ 485 (1102)
++.++.+.........|..+.+..++. .++++...|. +|.+.
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEEE
Confidence 887764322222222344455555666 6888877776 66543
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=0.034 Score=54.40 Aligned_cols=108 Identities=12% Similarity=0.012 Sum_probs=58.6
Q ss_pred EEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCC
Q 001311 905 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESS 983 (1102)
Q Consensus 905 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~ 983 (1102)
|..-+.|+.|+-+++...+...........+ ...-.-+..+++ +.+|.|++|............+.+-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----------~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG----------QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc----------eeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 3445668888888776533211110000000 111122344555 58999999988732221111111111
Q ss_pred CCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 984 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 984 ~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.-...+.-..++.+..+++.||.||.|++.-++.+....
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 122223334456688899999999999999988887655
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.43 E-value=4.7 Score=44.49 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCCeEEEEeCCCCe-eEEeeeeeeeccCCCCccccc--cccCCCCCCeEEEEEccCCCeEEEE--ECC--
Q 001311 357 VQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQA--ALVKDPGVSVNRVIWSPDGSLFGVA--YSR-- 429 (1102)
Q Consensus 357 dg~~llasg~~d~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~spdg~~las~--~~d-- 429 (1102)
+.++|++-|=.++.|.|.|+.+.- .... .++.+- ..... ..-..| .+.| -|+|++++++ ..+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l--~KvIe~----~ev~~k~g~s~PH--T~Hc---lp~G~imIS~lGd~~G~ 154 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRL--HKVIEP----EEVFEKTGLSRPH--TVHC---LPDGRIMISALGDADGN 154 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EE--EEEE-H----HHHHHHH-EEEEE--EEEE----SS--EEEEEEEETTS-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCce--EeeeCH----HHHHhhcCCCCCc--eeee---cCCccEEEEeccCCCCC
Confidence 567766666678999999998421 1110 011110 00000 001112 2333 3689899885 333
Q ss_pred --CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec--------------------CCCcEEEEeCCCC
Q 001311 430 --HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--------------------DDKTIKVWDATNG 487 (1102)
Q Consensus 430 --~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~--------------------~d~~i~vWd~~~~ 487 (1102)
|-+.+.|-++.+....-..-.+...--..+-|.|..+ +++|.. ...++.+||+.+.
T Consensus 155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 4578888777554432111111122345566677665 566653 2468999999999
Q ss_pred eeeEEeecCC--CCeEEEeeeecCCccEEEEEeC-CCeEEEE
Q 001311 488 AKQYIFEGHE--APVYSVCPHHKENIQFIFSTAL-DGKIKAW 526 (1102)
Q Consensus 488 ~~~~~~~~h~--~~v~~v~~~~~~~~~~l~s~s~-dg~i~~w 526 (1102)
+.++++.--. .....+.|..+++..+-++++. ..+|..|
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 9999986432 2244566666666555444443 3444333
No 415
>PRK10115 protease 2; Provisional
Probab=95.33 E-value=10 Score=46.48 Aligned_cols=245 Identities=9% Similarity=0.022 Sum_probs=115.6
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
-.+..+.++|||++|+.+.+.+--.-++ +.+.++.+|..+...+.. .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 3566788999999877665432222222 133444555433222211 114589999998
Q ss_pred eEEEEe-C------CeEEEEEcCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEEee--cceeeee
Q 001311 820 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK 885 (1102)
Q Consensus 820 ~las~s-d------g~I~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~--~~~~~~~ 885 (1102)
.|+... + ..|+.+++.++ +....+...........+.+.++++++..+. ++.+.+|+.. +++....
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 777664 2 25888888887 3333444333333322333336666655543 3478888843 3332222
Q ss_pred eccccccceeEEEecCCCEEEEEcCC-C--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E-eC
Q 001311 886 LKGHSKRITGLAFSHALNVLVSSGAD-S--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HE 960 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~s~s~D-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~-~d 960 (1102)
+..-.+....+. +..+.+++....+ . .|...++.. ......+..... ...+..+.++ +.+|+. . .+
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~--~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~ 335 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQR 335 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCC--cccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeC
Confidence 221112222222 2233333333222 2 333334432 111122221111 1246667776 334444 3 55
Q ss_pred Ce--EEEEEcCCceEeeeeccCCCCCCeeEEEEc--CCCc-EEEEEeC---CCeEEEEEcCCcee
Q 001311 961 TQ--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLKL 1017 (1102)
Q Consensus 961 ~~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s--pd~~-~l~s~s~---Dg~I~vwd~~~~~~ 1017 (1102)
+. +.+++..++.. ..+.... ...+..+.++ +++. ++++.+. -+.++.+|..+++.
T Consensus 336 g~~~l~~~~~~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~ 398 (686)
T PRK10115 336 GLTSLRQINRKTREV-IGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER 398 (686)
T ss_pred CEEEEEEEcCCCCce-EEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence 54 45555543333 3322111 1223333444 4443 4444443 36799999988753
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.30 E-value=0.75 Score=45.27 Aligned_cols=90 Identities=9% Similarity=0.110 Sum_probs=65.3
Q ss_pred eEEEEecCCCeEEEEe--CCeEEEEE--cCCCce-----eeeecC----CCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311 810 PCFALSKNDSYVMSAS--GGKISLFN--MMTFKT-----MATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 876 (1102)
Q Consensus 810 ~~l~~s~d~~~las~s--dg~I~iwd--~~~~~~-----~~~~~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 876 (1102)
..++|+.|.+.+.... +-+|.-|| ..+|.. +..++. .....-.+++.. +|++.++.-..|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4578888888776665 56777787 445443 222222 112234456666 788888888999999999
Q ss_pred eecceeeeeeccccccceeEEEec
Q 001311 877 VRVDEVKSKLKGHSKRITGLAFSH 900 (1102)
Q Consensus 877 ~~~~~~~~~l~~h~~~V~~l~~s~ 900 (1102)
..+|+.+.+++-....|+++||--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999988899999999963
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.13 E-value=3.2 Score=41.09 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=39.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 617 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 617 (1102)
++++.+|+..++.-..++|...|..+|+.+..+... +..++|++|-..
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence 345667788888889999999999999999998876 457999999653
No 418
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.11 E-value=1.1 Score=53.05 Aligned_cols=193 Identities=9% Similarity=0.065 Sum_probs=104.2
Q ss_pred eEEEEecCCCeEEEEe-C-C-----eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEE
Q 001311 810 PCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIY 875 (1102)
Q Consensus 810 ~~l~~s~d~~~las~s-d-g-----~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vw 875 (1102)
.++++. ++...++|+ | | ++..||..+.+-.. .+...........+ +|.+.|+|+.|| +|..|
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEe
Confidence 344443 446666666 6 2 47888887655222 12211221222222 789999999997 57778
Q ss_pred Eeecce--eeeeeccccccceeEEEecCCCEEEEEcCCC------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311 876 NVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 876 d~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 947 (1102)
|..+.+ .+..+.........+. -+|+..+.||.|+ ++..||..+..-.....+...... ..++
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~a 472 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGVA 472 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceEE
Confidence 876643 3332322222222222 3788888888664 467888877654333333222221 2233
Q ss_pred EccCCcEEEE-EeCC-----eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCce
Q 001311 948 FHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLK 1016 (1102)
Q Consensus 948 ~spdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~ 1016 (1102)
.-++...++ |.|+ .|..||..+.+....-........+..+.+ +++..++|+.|| +|..||..+.+
T Consensus 473 -~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 473 -VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred -EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 334555555 4444 488899988776554322222222222333 677888888876 47777766654
Q ss_pred eE
Q 001311 1017 LR 1018 (1102)
Q Consensus 1017 ~~ 1018 (1102)
-.
T Consensus 550 W~ 551 (571)
T KOG4441|consen 550 WT 551 (571)
T ss_pred ee
Confidence 43
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.10 E-value=0.081 Score=38.20 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311 983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
...|..++|+|...+||.++.||.|.||++ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 5443
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.85 E-value=6.7 Score=41.97 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=110.7
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-cee-
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV- 882 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~- 882 (1102)
...++.|.. ...+++|..+. .+.....++.-..+. .-.+....+.... ++..++ ++..|.|+. ... |+.
T Consensus 63 ~l~~I~f~~-~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~--T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDG-NEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYR--TTDGGKTW 136 (302)
T ss_dssp EEEEEEEET-TEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEE--ESSTTSSE
T ss_pred eEEEEEecC-CceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEE--eCCCCCCe
Confidence 356677754 34555555553 333333344333221 1123333444433 343333 344555443 322 221
Q ss_pred eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCe
Q 001311 883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 962 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~ 962 (1102)
......-.+.+..+..++||++++++..-....-||-... ...+..... ...|..+.|+|++...+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 1223344577888999999999998877666677875431 122222221 24789999999999888888888
Q ss_pred EEEEE-cCCceEeee--eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311 963 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus 963 i~iwd-~~~~~~~~~--~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
|+.=+ ....+.... .....-.-.+..++|.+++...|+|+ .|.+. ...+.|+-=.+.+.....+ .+.+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~-----~n~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVP-----SNLY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSS-----S-----
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCC-----CceE--
Confidence 88776 222222111 11111234589999999988888665 55443 4566666554444222222 2245
Q ss_pred EEEecCCCCCEEEEEecCCcEEEE
Q 001311 1040 VIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus 1040 ~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
.|.|.+ ++.-.+.+.||.|.-|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 788876 3455555778887655
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=4.7 Score=48.88 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=57.9
Q ss_pred CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
....|..+.++++|+++|..+...|.|..+.. +.....+.+-...|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 34578999999999999998876677766632 111122332223333333222 221111
Q ss_pred eeeccccccceeEEEecC---CCEEEEEcCCCcEEEEEcCC
Q 001311 884 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123456777888876 47888888899999999864
No 422
>PHA03098 kelch-like protein; Provisional
Probab=94.72 E-value=1.5 Score=52.42 Aligned_cols=187 Identities=7% Similarity=-0.016 Sum_probs=92.6
Q ss_pred cCCCeEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecce
Q 001311 816 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 881 (1102)
Q Consensus 816 ~d~~~las~s-d------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~ 881 (1102)
.++..++.|+ + ..+..||..+.+-... +.........++ - ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4555556554 3 2477888776543221 111111222222 2 677888888663 57778877643
Q ss_pred e--eeeeccccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311 882 V--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 953 (1102)
Q Consensus 882 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 953 (1102)
- ...+....... ++ ..-+++..+.||.+ ..+..||..+.+-.. ....... .. ...+...+++
T Consensus 370 W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~----r~-~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPIS----HY-GGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCcc----cc-CceEEEECCE
Confidence 2 22222111111 12 22367777777732 357888887654321 1111100 01 1122334556
Q ss_pred EEEEE-eC--------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCcee
Q 001311 954 HFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 1017 (1102)
Q Consensus 954 ~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~ 1017 (1102)
..+.| .+ ..+.+||..+++....-...........+. -++++++.|+.+ ..|.+||..+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 55554 21 238899998876544321111111111222 277777777754 4688888777654
No 423
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=94.54 E-value=0.034 Score=52.11 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=50.2
Q ss_pred hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC
Q 001311 60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 123 (1102)
Q Consensus 60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 123 (1102)
++|+|+.|.||+|+..|..++|..+|.+.-..+...+.+++++|..+....++.+++....++.
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~ 103 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRS 103 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHh
Confidence 8999999999999999999999999998777766667888999988777776665555554544
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=94.50 E-value=2.1 Score=49.99 Aligned_cols=184 Identities=10% Similarity=-0.028 Sum_probs=91.9
Q ss_pred cCCCeEEEEe-C-----CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEEeecce--ee
Q 001311 816 KNDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDE--VK 883 (1102)
Q Consensus 816 ~d~~~las~s-d-----g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~--~~ 883 (1102)
.++..+++|+ + .++..||..+.+-.. .+....... +++ .- ++++.++|+.++ .+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 3 247778877644322 222111112 222 23 678888888643 57888876543 22
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCC---cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 960 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d 960 (1102)
..+....... .+..-+|+..+.||.++ .+..||..+.+- ......... .-...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W---~~~~~m~~~-----r~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQW---QFGPSTYYP-----HYKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEE---EeCCCCCCc-----cccceEEEECCEEEEEC--
Confidence 3332111111 22234778888888654 467888776432 211111110 01112223456655555
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCce
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1016 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~ 1016 (1102)
|.+.+||..+++....-......... +++ .-+|+..+.|+.+ .+|.+||..+++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 45778998877665432221111122 222 2377888888754 346666666553
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=94.40 E-value=9.8 Score=41.92 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=87.1
Q ss_pred cccceeEEEecCCCEEEEEcCCCcEEE-EEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEc
Q 001311 890 SKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 968 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~ 968 (1102)
...+.++.+.+++.+++++. .|.+.. ++- .++ ........ ....+..+.+.++++.++++..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~--tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQT--AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCC--eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 45688899999987766554 454432 221 111 11122111 124778999999999888887776653234
Q ss_pred CCceEeeeeccC--CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311 969 TKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus 969 ~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
+.|..-...... .-...+.++.+.+++..++++ .+|.|. ...+.|+.-.........+. ..+ .+.|..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~- 312 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD- 312 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC-
Confidence 444432221111 113457889999988765544 677665 34555554333321111111 133 566664
Q ss_pred CCCEEEEEecCCcEEEEec
Q 001311 1047 EPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1047 d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
++.....+..|.|..|+-
T Consensus 313 -~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 -PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred -CCceEEECCCceEEEecC
Confidence 345555677899888764
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=2.1 Score=41.56 Aligned_cols=173 Identities=11% Similarity=0.061 Sum_probs=98.0
Q ss_pred CCCeEEEEe---CCeEEEEEcCCCceeeeecCCCC-----CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311 817 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-----AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 888 (1102)
Q Consensus 817 d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~-----~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 888 (1102)
+|.++.+.+ ...|++||+.+++.+..-.-... .|+.+ +..+.+..-.+|.-.+||..+.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 455666554 35699999999888765432211 22222 33444455678999999999888877765
Q ss_pred ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001311 889 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 967 (1102)
Q Consensus 889 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd 967 (1102)
..+.=+.++- |++.|+.++...+++.-|.++-...... ....+|..- ..+..+-| -||...|- -....|...+
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARID 202 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceee-eccEEEEeeeeecceEEEc
Confidence 2344455544 6666777766667777776654332221 111222100 01111222 14444444 2555666667
Q ss_pred cCCceEeeeeccC----------CCCCCeeEEEEcCCC-cEEEEE
Q 001311 968 TTKLECVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1001 (1102)
Q Consensus 968 ~~~~~~~~~~~~~----------~h~~~v~~l~~spd~-~~l~s~ 1001 (1102)
.++|+.+.-+... .|..-.+.+++.|++ +++++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7777776554321 245567888999887 555555
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=94.14 E-value=11 Score=41.51 Aligned_cols=156 Identities=10% Similarity=0.039 Sum_probs=88.8
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCcEEE-EEeecceeee-eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcc
Q 001311 847 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 924 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~~dg~v~v-wd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~ 924 (1102)
...+..+.+.+ ++.+++++. .|.++. +|- .++.-. .-..-...++++.+.++++.++.+ ..|.+++=+.+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776554 565543 221 122111 122334678899999998877654 467654323333321
Q ss_pred cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeecc-CCCCCCeeEEEEcCCCcEEEEEeC
Q 001311 925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
.......... ....+..+.+.+++..++++.+|.+. ...+.++.-..... ..-....+.+.|..+++.+++ +.
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence 1111111000 11246788999999988888887665 34444443333221 111345778888877776664 46
Q ss_pred CCeEEEEEc
Q 001311 1004 DATVCVFSA 1012 (1102)
Q Consensus 1004 Dg~I~vwd~ 1012 (1102)
.|.|-.|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888887763
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.08 E-value=8.8 Score=40.11 Aligned_cols=229 Identities=15% Similarity=0.232 Sum_probs=128.2
Q ss_pred CeEEEEEccCCCeEEEEECCCeEEEEEcc------CCceeeeEEEeec-----cccCEEEEEEcCCCCe----------e
Q 001311 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L 468 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d~~v~vwd~~------~~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~----------~ 468 (1102)
.-+.|+|+|.+.+-++....+...+||.. ..+.+ ..++.. -....+.+.|+..... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L--~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPL--VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccce--EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999999888888888999999987 12111 112221 1245777888754331 1
Q ss_pred EEEEecCCCcEEEEeCCCCee-----eEEee-cCCCCe-EEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCCee--eec
Q 001311 469 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE 538 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~~~-----~~~~~-~h~~~v-~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~--~~~ 538 (1102)
.++.+++||+|.=|...-+.. ...+. +..+.| ..+++.....+.+|+.+. ..++|.++|-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367788999999998543222 12222 122333 344554344445665554 46888888754322110 010
Q ss_pred CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--
Q 001311 539 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-- 616 (1102)
Q Consensus 539 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-- 616 (1102)
.+. + -.-|.|-+-+.+.+ .-.++...-+++++.=+.+-.-|.|-+||+ .|..++++...+....-..|+..|
T Consensus 182 DP~--i-PagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPA--L-PAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCC--C-CCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 000 0 00011110000000 000111112333333344556689999997 688888887666555667788766
Q ss_pred ----CCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 617 ----DGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 617 ----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
.+.+|+---.||+|..+|..++ +.+-.+..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4677887778999999999888 44444443
No 429
>PHA03098 kelch-like protein; Provisional
Probab=94.00 E-value=3 Score=49.76 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=94.5
Q ss_pred CCcEEEEEeCCC------cEEEEEeecceeee--eeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCccc
Q 001311 859 DNNIIAIGMDDS------SIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ 925 (1102)
Q Consensus 859 d~~~lasg~~dg------~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~ 925 (1102)
++.+++.|+.++ .+..||..+.+-.. .+.........+ .-+++..+.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666665432 56778877654322 122111112222 2367788888865 34677887764422
Q ss_pred ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--C-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEE
Q 001311 926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--E-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 998 (1102)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l 998 (1102)
....+... ..-.++ ..-+++..+.|+ . +.+..||..+++....-.... ...-.+ +...+++.+
T Consensus 372 ~~~~lp~~-------r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iy 441 (534)
T PHA03098 372 EEPPLIFP-------RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIY 441 (534)
T ss_pred eCCCcCcC-------CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEE
Confidence 11111110 011122 233556555542 1 468899988776543321111 111112 223367777
Q ss_pred EEEeCC--------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEec
Q 001311 999 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1065 (1102)
Q Consensus 999 ~s~s~D--------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~ 1065 (1102)
+.|+.+ ..+.+||..+++-...-. .+...... . .+.+ ++.+++.|+.+ +.|.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~~--~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPRINA--S--LCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC----CCcccccc--e--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 777643 238888988775443211 11110011 1 2222 46788888765 46788887
Q ss_pred cCCCcccccC
Q 001311 1066 LESEGKWGVP 1075 (1102)
Q Consensus 1066 ~~~~~~~~~~ 1075 (1102)
.+.+ |...
T Consensus 511 ~~~~--W~~~ 518 (534)
T PHA03098 511 KTNT--WTLF 518 (534)
T ss_pred CCCE--EEec
Confidence 7654 6543
No 430
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.93 E-value=20 Score=43.76 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=64.7
Q ss_pred EEEecCCCeEEEEeCCeEEEEEcCCCceeeee--cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeecc
Q 001311 812 FALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG 888 (1102)
Q Consensus 812 l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~ 888 (1102)
.++.|-..++.+|-...+++||+...+.++.. +.....|+.+.+. +..+++|+.--.|..+..+. ++.+..+.+
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 45567777888888899999999876665543 3235567777774 45777777666666544432 223333322
Q ss_pred --ccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 889 --HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 889 --h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
-...|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22346666554 55567777766766666554
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.80 E-value=2.1 Score=50.28 Aligned_cols=125 Identities=10% Similarity=0.098 Sum_probs=78.1
Q ss_pred cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC
Q 001311 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 532 (1102)
Q Consensus 454 ~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 532 (1102)
...+-+.-|.-++ ..+..+....+.|||.+.+.....-. ...+.|.++.|...++++.+++.|..+.|.++.-....
T Consensus 30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3455555555566 34444455689999999887554322 35788999999999999999999999999998432111
Q ss_pred CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311 533 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 591 (1102)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 591 (1102)
.... ...-..+..+. +..++..+|....|.++|..++.+ ++.+.|+|-
T Consensus 108 y~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 0000 00011222222 233444567777888887655544 356888764
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.67 E-value=13 Score=40.78 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=92.1
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCc------EEEEEeec--c--eee-----eeeccccc--------cceeEEEecCCC
Q 001311 847 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN 903 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~~dg~------v~vwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 903 (1102)
-+.+..+++.+.++.+++ .+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999873555444 566776 66666543 1 001 11222122 234788888888
Q ss_pred EEEEEcCC------CcEEEEEcCCCcccceeeeecCC-------CCCCCCCCCcEEEEccCCcEEEEEe------CC--e
Q 001311 904 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVVH------ET--Q 962 (1102)
Q Consensus 904 ~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~spdg~~l~~~~------d~--~ 962 (1102)
++++.=.+ ..|+.++.. +.......+...- ...........++++|||+.|.++. |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887666 778888866 4432221111100 1122335678999999999555431 22 1
Q ss_pred -------EEE--EEcCC-ceEeeeecc--CC-----CCCCeeEEEEcCCCcEEEEEe-----CCCeEEEEEcC
Q 001311 963 -------LAI--FETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1013 (1102)
Q Consensus 963 -------i~i--wd~~~-~~~~~~~~~--~~-----h~~~v~~l~~spd~~~l~s~s-----~Dg~I~vwd~~ 1013 (1102)
+++ ||..+ ++....+.. .. ....|..+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 323333322 11 357889999999999877432 23456666543
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.64 E-value=1.2 Score=52.08 Aligned_cols=120 Identities=10% Similarity=0.134 Sum_probs=74.2
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec-cccccceeEEEe--cCCCEEEEEcCCCcEEEEEcCCC-
Q 001311 847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGW- 922 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~vwd~~~~- 922 (1102)
...++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|. ||++.+++.|-...|.++.-...
T Consensus 29 i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 29 ISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34455555555 44454444445589999998876433221 346789999986 78999999999999999854211
Q ss_pred ---cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEc
Q 001311 923 ---EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 968 (1102)
Q Consensus 923 ---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~ 968 (1102)
.......+....-...++.+|.+..|.++|.+++. ..+++.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECC
Confidence 11111112211111112257889999999986654 4567788764
No 434
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.41 E-value=16 Score=40.99 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=84.2
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce-
Q 001311 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN- 927 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~- 927 (1102)
...+..++ |+.+++.|..-..++-||-.. .. ...-......++++.|.+++..++++ .+|.+. |....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~-~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQ-PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCC-cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34455666 777777665333333344221 10 11112234568899999998887765 556543 44444321100
Q ss_pred eeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeec-cCCCCCCeeEEEEcCCCcEEEEEeCCCe
Q 001311 928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDAT 1006 (1102)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~Dg~ 1006 (1102)
........ .....+..+.|.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.
T Consensus 317 ~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 317 DFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred ceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 01111100 011257889999999999999888776653 3333322211 11224578899998887776665 6888
Q ss_pred EEEE
Q 001311 1007 VCVF 1010 (1102)
Q Consensus 1007 I~vw 1010 (1102)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.27 E-value=9.4 Score=38.99 Aligned_cols=192 Identities=13% Similarity=0.128 Sum_probs=121.8
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee
Q 001311 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF 929 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 929 (1102)
-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+..+
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--- 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--- 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---
Confidence 45667778 88888888888888888888888766655555555667788888766654443 35555655544322
Q ss_pred eecCCCCCCCCCCCcEEEEccCCcEEEEEeCC----------eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEE
Q 001311 930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 999 (1102)
Q Consensus 930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~----------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 999 (1102)
......+. ........|.+.|++-+++..| .|++|+.. .....+.||..|||...+
T Consensus 139 f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 FPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred eecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence 22222222 2467889999999999886443 34444432 245677889999999888
Q ss_pred EEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1000 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1000 s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+.-.+..|..-|..++.. ..+....-+..+ .. .+--+| -+..-+|....+.++.+|.++..
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 877777888778777632 233322222222 11 233334 36677777777888888876655
No 436
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=2.4 Score=41.12 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=102.0
Q ss_pred CCcEEEEEeCCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEEEE-EcCCCcEEEEEcCCCcccceeeeecCCC
Q 001311 859 DNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTG 935 (1102)
Q Consensus 859 d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 935 (1102)
++.++.+.+.-| .|++||+.+++.+..-.-....+..=-...-+.++.. .=.||.-.++|.++.+...... .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~---y-- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS---Y-- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc---c--
Confidence 567777665443 7999999988876543222122221111111223222 2247778888888754322111 1
Q ss_pred CCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCC---eeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 936 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 936 ~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
.=.......|++.|+.+ ....++.-|.++.....+........+ ++.+.|- ||...|-.=.+..|..-+
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11344556677767665 455676667766544443322111222 3334443 677777666667777778
Q ss_pred cCCceeEEEeCCCcccCCCC----CCCcccceEEEecCCCCCEEEEEe
Q 001311 1012 AANLKLRCRINPSAYLPAGV----SSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~gh----~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
.++|+.+.-+..+.....-. .....+ .|++.|+.+++++||-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence 89999888777555443321 111133 8999997767888873
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=0.96 Score=54.69 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=94.1
Q ss_pred CCCeeEEEEecCCCeEEEEe--C-CeEEEEEcCCCceee-----eecCC------CCCeeEEEEecCCCcEEEEEeCCCc
Q 001311 806 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS 871 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s--d-g~I~iwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~ 871 (1102)
..++..+++.+|+...++.. + ..|..||+++...-. .|..| ..-..++.|.|.=.-..|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44567777888877666554 3 369999987543221 12222 2235677888743445667788999
Q ss_pred EEEEEeecce-eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 872 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 872 v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
|+|..+.-.. ....+. -...+++++|+|.|+.++.|-..|++.-|......+.. + +.-.......|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---i--p~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---I--PEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---c--cCCCcCCCcceeEEEEec
Confidence 9988765321 122222 45668999999999999999999999988765422111 1 111111125789999998
Q ss_pred CCcEEEE
Q 001311 951 DQIHFLV 957 (1102)
Q Consensus 951 dg~~l~~ 957 (1102)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.04 E-value=3.6 Score=46.17 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=79.0
Q ss_pred cceeEEEecCCCEEEEEc-----------CCC-cEEEEEcCCC--cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 892 RITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGW--EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s-----------~Dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
...+|+|.++|+++++-. ..+ .|.+++-..+ ...+...+ ..+. .....+++.++| ++++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf--a~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF--AEEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe--ecCC----CCccceeEecCC-EEEe
Confidence 456789999988877753 223 6777765432 22111111 1111 245789999999 4444
Q ss_pred EeCCeEEEE-EcCCc-----e--Ee-eeeccCC--CCCCeeEEEEcCCCcEEEEEeCC-------------------CeE
Q 001311 958 VHETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATV 1007 (1102)
Q Consensus 958 ~~d~~i~iw-d~~~~-----~--~~-~~~~~~~--h~~~v~~l~~spd~~~l~s~s~D-------------------g~I 1007 (1102)
. ...|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|
T Consensus 88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3 3345444 54321 1 11 1222110 23457889999999877755521 345
Q ss_pred EEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC
Q 001311 1008 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus 1008 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
.-++.++++.. .+. .|+ ..+..++|+| +++++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence 55555554432 111 221 3355899999 678877655443
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.01 E-value=0.15 Score=59.53 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=96.7
Q ss_pred cCCCCeeEEEEe----cCCCeEEEEEecCCeEEEEeCCC--CeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 344 NQGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 344 ~h~~~v~~v~~s----pdg~~llasg~~d~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
+..+.|-.++|- |.+.. ++ |...|||+.- |+......+.+ ...-...+.-+.|.
T Consensus 130 gf~G~v~dl~fah~~~pk~~~-~v-----g~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGRR-LV-----GELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWC 189 (1283)
T ss_pred cCCCCcccccccccCChHHHH-Hh-----hhhheeehHhhccccccceEEee--------------cCcCCCCcceeeec
Confidence 355677777773 44442 22 7788998853 44433322221 22223334455555
Q ss_pred c---CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEE-----------EcCCCCeeEEEEecCCCcEEEEe
Q 001311 418 P---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA-----------FSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 418 p---dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~-----------~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
| +.-++..+-.+++|++..+.+... . .+.+|...+..++ .||||+ .+++++.||.++.|.
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQ 263 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceee
Confidence 5 777888888889999887766443 1 2557888777665 478898 789999999888886
Q ss_pred CC-----CCeeeEEeecCCCCeEEEeeeecCC---------ccEEEEEeC-CCeEEEEEcCCCCCe
Q 001311 484 AT-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR 534 (1102)
Q Consensus 484 ~~-----~~~~~~~~~~h~~~v~~v~~~~~~~---------~~~l~s~s~-dg~i~~wd~~~~~~~ 534 (1102)
+. ...|++..+.|++.-. +||..... -.+++++++ ...+++|.-..-.+.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 54 2345566677774322 23332221 123445444 456888865544443
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.01 E-value=0.022 Score=61.67 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=98.5
Q ss_pred EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311 743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 822 (1102)
Q Consensus 743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la 822 (1102)
....+.+.+..++.++.+..+..||-. |+.+.. .........++|+.++..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-----------------------gq~~le----~n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-----------------------GQVILE----LNPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-----------------------cceecc----cCCchhHhhhhhccccchhh
Confidence 345566666668888888777777631 111110 11344566778888887766
Q ss_pred EEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEec
Q 001311 823 SAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 900 (1102)
Q Consensus 823 s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 900 (1102)
... .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.||+..+.+.+..+-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 68899999976332211111112222278999 889999999999999999887766666555999999999998
Q ss_pred CCCEEEEEcCCCcEEEEEc
Q 001311 901 ALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 901 d~~~l~s~s~Dg~i~vwd~ 919 (1102)
.+ +.+.++.|..+.+-..
T Consensus 170 Ed-~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQ 187 (615)
T ss_pred cc-eeeecCcHHHHHHhhh
Confidence 76 5666777765554433
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.96 E-value=3.3 Score=45.71 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=89.8
Q ss_pred CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC------CccEEEEEeCCCeEEEEEcCCCCCeeee
Q 001311 464 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSRVDY 537 (1102)
Q Consensus 464 d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1102)
++..+++..|+....++--|++.|+.+..+.-|...| +.+.+.. +.+.|+--| +..|.-.|.+..+.....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccCCceee
Confidence 3444466677777888899999999999998887764 3443321 223344444 455544555543321111
Q ss_pred cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311 538 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 617 (1102)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 617 (1102)
......++.-.| .+.. .....++++++..|.|++||.-..+....+++-+. .|..+..+.+
T Consensus 554 ~esKdY~tKn~F----------------ss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~ 614 (776)
T COG5167 554 VESKDYKTKNKF----------------SSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTAN 614 (776)
T ss_pred eeehhccccccc----------------cccc-cccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecC
Confidence 111111111111 1111 11235799999999999999765554455554444 6888999999
Q ss_pred CCEEEEEECCCcEEEEEcc
Q 001311 618 GCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 618 ~~~l~~~~~dg~i~iwd~~ 636 (1102)
|+++++.+. ..+.+.|+.
T Consensus 615 Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 615 GKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CcEEEEeec-ceEEEEecc
Confidence 999988775 467777764
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.71 E-value=3 Score=46.75 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=81.8
Q ss_pred CCeeEEEEecCCCcEEEEEe-----------CCC-cEEEEEeec--ce--eeeeeccccccceeEEEecCCCEEEEEcCC
Q 001311 848 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 911 (1102)
Q Consensus 848 ~~i~~l~~sp~d~~~lasg~-----------~dg-~v~vwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 911 (1102)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+........+|++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567888888 787776542 223 677776443 22 123333333456889999998 444 4444
Q ss_pred CcEEEEEcCCCcc---cceeeeecCCCC-CCCCCCCcEEEEccCCcEEEE-EeC-------------------CeEEEEE
Q 001311 912 SQLCVWSSDGWEK---QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE 967 (1102)
Q Consensus 912 g~i~vwd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~-~~d-------------------~~i~iwd 967 (1102)
...++.+.+.... ....++..+... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333435443211 111222222221 001134678999999987776 311 3455555
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
..+++.. .+. .+ -.....++|+++|+++++-..+
T Consensus 171 pdg~~~e-~~a-~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLR-VVA-HG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEE-EEe-cC-cCCCccceECCCCCEEEEccCC
Confidence 5554432 222 23 3456789999999988765533
No 443
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.51 E-value=33 Score=42.11 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=70.9
Q ss_pred cEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE--EEEcCCceeEEEe
Q 001311 944 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC--VFSAANLKLRCRI 1021 (1102)
Q Consensus 944 ~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~--vwd~~~~~~~~~~ 1021 (1102)
.-.++.|...++.++....+++||+...+..+......-...|+.+++ .+..+++|...-.|. .|+-+..+++. +
T Consensus 937 ~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~-f 1013 (1205)
T KOG1898|consen 937 PVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV-F 1013 (1205)
T ss_pred cceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE-E
Confidence 345677777788888888999999988777666544333567778777 466777776555544 45544454443 2
Q ss_pred CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
. ....+.+ |. .+.+- |-..++.+..-|.+.+-++...-
T Consensus 1014 a-dD~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1014 A-DDPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred e-CCCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 2 2222222 33 44444 45678888777888887775543
No 444
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.47 E-value=14 Score=37.79 Aligned_cols=242 Identities=11% Similarity=0.071 Sum_probs=144.8
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
.......++-++||..-.++. .+.|--.|-.+++....--+.......|...| |+..-++-+.. -|.-.|-++.+.
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev- 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV- 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-
Confidence 345567788889998877777 67788888888887766666666677888888 55544442222 444455544432
Q ss_pred eee----ccccccceeEEEecCCCEEEEEcCC---------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 884 SKL----KGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 884 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
.++ +.-........|.++|.+-+++... +.|+||+... |. ....++..|
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G~-----gpyGi~atp 198 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------GG-----GPYGICATP 198 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------CC-----CCcceEECC
Confidence 222 2234556778899999888887532 3455555432 22 447899999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCC
Q 001311 951 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1029 (1102)
Q Consensus 951 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 1029 (1102)
||..-+++ .++.|...|..++.........+-...-..+--+|.|+.-++....+.+.-||-.+.. =..+. +|.
T Consensus 199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LPg 273 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LPG 273 (353)
T ss_pred CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CCC
Confidence 99988875 6677777777776433322222212334445557778887877777777777765544 22333 222
Q ss_pred CCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC-cccccCCC
Q 001311 1030 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1077 (1102)
Q Consensus 1030 gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~~ 1077 (1102)
. ...-+ ++.-.. .+..-.+--..|.|.-+|..+.. ..+..++|
T Consensus 274 s--~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 274 S--KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred C--CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 1 11122 232222 12333444455777777777666 55555555
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.29 E-value=0.13 Score=60.02 Aligned_cols=178 Identities=13% Similarity=0.196 Sum_probs=99.2
Q ss_pred CeEEEEEcC--CCceeee-----ecCCCCCeeEEEEecC--CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEE
Q 001311 827 GKISLFNMM--TFKTMAT-----FMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 897 (1102)
Q Consensus 827 g~I~iwd~~--~~~~~~~-----~~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 897 (1102)
|.+.||++. .|+.... .......+.-+.|.|. +.-++..+..++.|++....... ...+.+|+..++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHH
Confidence 678888875 2332222 1222233444444431 45677778888999887766533 245566887777665
Q ss_pred -----------EecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC-------Cc--EEEE
Q 001311 898 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV 957 (1102)
Q Consensus 898 -----------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-------g~--~l~~ 957 (1102)
.||||+.+|.++.||.++.|.+.-......+++.....|.. .+-.+.-|..+ |. ++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876433333334333333321 12222223332 22 2333
Q ss_pred E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc------------EEEEEeCCCeEEEEEc
Q 001311 958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ------------LVYACFLDATVCVFSA 1012 (1102)
Q Consensus 958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~------------~l~s~s~Dg~I~vwd~ 1012 (1102)
+ .+..+++|.....+|.-.+. -..|..+. -+||+ .+++-+-|++|.+|.=
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 3 34578888877776652221 12233333 22332 1344556788888853
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.16 E-value=3.8 Score=49.66 Aligned_cols=84 Identities=11% Similarity=0.175 Sum_probs=55.1
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC----------Cc--eeEEE-eCCCcccCCCCCCCcccceEEEecCC--C
Q 001311 983 SAPITHATFSCDSQLVYACFLDATVCVFSAA----------NL--KLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQ--E 1047 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~----------~~--~~~~~-~~~~~~~~~gh~~~~v~~~~v~f~p~--d 1047 (1102)
.-.|..+.++|+|++|+..+..|. .|-.+. .| ...|+ +.....+... +.......+.|+|. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence 457889999999999999987664 333332 11 22332 2222223222 22244558999996 2
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001311 1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+..|+.-.+|+++++||+....
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 4678888999999999998766
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=91.98 E-value=9.4 Score=44.61 Aligned_cols=185 Identities=6% Similarity=-0.048 Sum_probs=94.3
Q ss_pred CCcEEEEEeCCC-----cEEEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCC--CcEEEEEcCCCcccceee
Q 001311 859 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF 929 (1102)
Q Consensus 859 d~~~lasg~~dg-----~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~ 929 (1102)
++.++++|+.++ .+..||..+++- +..+........ ++ .-++...+.||.+ ..+..||..+++- ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W---~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAW---VN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeE---EE
Confidence 567777787653 566788776542 222322221122 22 3467777888764 3577788655332 11
Q ss_pred eecCCCCCCCCCCCcEEEEccCCcEEEEE-eC---CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC
Q 001311 930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005 (1102)
Q Consensus 930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg 1005 (1102)
....... .....+..-+|+..+.| .+ ..+..||..+.+....-........ .++ ..-+|+..+.| |
T Consensus 346 ~~~l~~~-----r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 346 MPSLLKP-----RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCCCCC-----CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEEC---C
Confidence 1111110 11122233456666663 32 3577899887765443222111111 122 23467776766 4
Q ss_pred eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311 1006 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus 1006 ~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
.+.+||..+++-... . .++..+... +++.. ++.+.+.||.+ .+|..+|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~-~---~m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLI-D---DPIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEc-C---CCCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577899877654421 1 122211111 22322 46888888865 357788887765
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=13 Score=43.57 Aligned_cols=182 Identities=8% Similarity=0.116 Sum_probs=96.3
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
.+..+.|+.+..+|++.-+|++++|++-... +.. +......|..+.|.. +|-.+ -..+|.|.+-+-.....+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~-~GVav--lt~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH-NGVAV--LTVSGQVILINGVEEPKL 160 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEec-CceEE--EecCCcEEEEcCCCcchh
Confidence 7889999999988888889999999985322 222 122334455555555 55333 344566655432222223
Q ss_pred eeecc-ccccceeEEEe--cCCC---EEEEEc-CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311 884 SKLKG-HSKRITGLAFS--HALN---VLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 884 ~~l~~-h~~~V~~l~~s--~d~~---~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 956 (1102)
.++.. .......-+|+ +++. .++-.. ..+ ..+.-.+... ......... ...+..+..||+.++|+
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~----~~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWP----NSSVVKISVSPNRRFLA 232 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCC----CceEEEEEEcCCcceEE
Confidence 33322 11222222332 2211 111111 111 1122222211 111111111 13678899999999999
Q ss_pred E-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 957 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 957 ~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
. ...|.|.+-+.+..++...+.+..|. +...++|. +.|..+.+|.
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wc---------gndaVvl~~e 278 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWC---------GNDAVVLSWE 278 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCCC-chHhceee---------cCCceEEEEe
Confidence 8 68899999998888887777654433 22255554 4455555665
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.56 E-value=45 Score=41.62 Aligned_cols=174 Identities=11% Similarity=0.137 Sum_probs=102.2
Q ss_pred CCCCeeEEEEe---c----CCCeEEEEeCCeEEEEEcCCC---------------ceeeeecC---CCCCeeEEEEecCC
Q 001311 805 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD 859 (1102)
Q Consensus 805 ~~~~i~~l~~s---~----d~~~las~sdg~I~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d 859 (1102)
...+|..|+|. . ..++|++-....+.|+...-. ..+.++.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888887 2 224777766777888872211 11222221 12346677888877
Q ss_pred CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311 860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 939 (1102)
Q Consensus 860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 939 (1102)
.+.||+.+..|...||++..... .+. ... -+.....|.| +.|.+..
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~~----------~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SNL----------RLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cCC-cce----------eeccCCCccc-cCCCccc-----------------
Confidence 77888888888888888721110 000 011 1111122222 2222110
Q ss_pred CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC--CcEEEEEeCCCeEEEEEcCCc
Q 001311 940 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 940 ~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++ +..++.. ...|...++.+.
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 123577888888888888888999999988766442222234678999999887 3333332 367888887763
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=24 Score=41.61 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=93.7
Q ss_pred eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee--e--ccccccceeEEEecCCC
Q 001311 828 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALN 903 (1102)
Q Consensus 828 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~ 903 (1102)
.|+||++. |+.+..+.-..+.+..+.|+. +. -|++-..||+++||++.. +.+.. . ......|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 48888874 555555444445899999996 44 555678999999999863 22222 1 22223354455555553
Q ss_pred EEEEEcCCCcEEE-EEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--EeCC--eEEEEEcCC--ceEeee
Q 001311 904 VLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET--QLAIFETTK--LECVKQ 976 (1102)
Q Consensus 904 ~l~s~s~Dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~d~--~i~iwd~~~--~~~~~~ 976 (1102)
.+. ..+|.+.+ -+.+.... ...-.++ +... .-.+...-+++..... .-+- ...++.... .+....
T Consensus 141 avl--t~~g~v~~i~~~~~~~~--~~~~diP-~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVL--TVSGQVILINGVEEPKL--RKMPDIP-YNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEE--ecCCcEEEEcCCCcchh--hhCCCCC-CccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 333 33444433 33322111 0000001 1000 1122222222211111 1110 011111111 111111
Q ss_pred eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 977 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
. .....+..+.+||+.++|+-=..+|.|.+-+.+..+..+.++
T Consensus 213 -~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 -S--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred -C--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 113578889999999999999999999999999988888777
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.88 E-value=19 Score=38.54 Aligned_cols=194 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred eeEEEEecCCCeEEEEeCC-------------eEEEEEcCCCceeeeecCC------CCCeeEEEEecCCC----cEEEE
Q 001311 809 VPCFALSKNDSYVMSASGG-------------KISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI 865 (1102)
Q Consensus 809 i~~l~~s~d~~~las~sdg-------------~I~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las 865 (1102)
|..+...+++++-+.=+.. +|.+||+.+.+.++++.-+ .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Q ss_pred EeCC-CcEEEEEeecceeeeeecccc-------------------ccceeEEEec---CCCEEEEEcCCCcEEEEEcCCC
Q 001311 866 GMDD-SSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW 922 (1102)
Q Consensus 866 g~~d-g~v~vwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~ 922 (1102)
.... +-|.|||+.+++..+.+..+. +.+.+++.+| |+++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Q ss_pred cccceeeeecC------CCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC----ceEeeeeccCCCCCCeeEEEE
Q 001311 923 EKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK----LECVKQWVPRESSAPITHATF 991 (1102)
Q Consensus 923 ~~~~~~~~~~~------~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~----~~~~~~~~~~~h~~~v~~l~~ 991 (1102)
-.......... ..-.........++++++|....+ ...+.|..|+..+ ........-...-..+..+.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Q ss_pred cC--CCcEEEEEeC
Q 001311 992 SC--DSQLVYACFL 1003 (1102)
Q Consensus 992 sp--d~~~l~s~s~ 1003 (1102)
.+ +|.+.+.++.
T Consensus 242 ~~~~~g~L~v~snr 255 (287)
T PF03022_consen 242 DPEGDGYLWVLSNR 255 (287)
T ss_dssp -T--TS-EEEEE-S
T ss_pred ccccCceEEEEECc
No 452
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.82 E-value=5.7 Score=45.77 Aligned_cols=77 Identities=16% Similarity=0.316 Sum_probs=54.5
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 487 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~ 487 (1102)
...++++.-+|.|+-++.+..||.|++|++......+ +.....+-..+.|...| |++...|+.+--|. +.|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence 3467888888999999999999999999987644321 22233455667776554 56667788888887 666
Q ss_pred eeeEEe
Q 001311 488 AKQYIF 493 (1102)
Q Consensus 488 ~~~~~~ 493 (1102)
-..+.|
T Consensus 85 vvqqqf 90 (1636)
T KOG3616|consen 85 VVQQQF 90 (1636)
T ss_pred cchhhc
Confidence 555544
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.76 E-value=0.97 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.0
Q ss_pred CCeEEEEEccC-C--CeEEEEECCCeEEEEEccCC
Q 001311 409 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 440 (1102)
Q Consensus 409 ~~V~~l~~spd-g--~~las~~~d~~v~vwd~~~~ 440 (1102)
+.|.++.|||+ + ++||.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58898888899999999864
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.70 E-value=24 Score=37.02 Aligned_cols=205 Identities=9% Similarity=0.073 Sum_probs=119.8
Q ss_pred eeEEEEecCCCeEEEEe-CCeEEEEEcC------CC-ceeeeecC-----CCCCeeEEEEecCCCc------------EE
Q 001311 809 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNN------------II 863 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s-dg~I~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~------------~l 863 (1102)
.+.|+++|.+.+-++.. -+...+||.. .. .++-++.. .....+.+.|+. ... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 57899999887666655 5889999986 11 22333332 234578888875 222 25
Q ss_pred EEEeCCCcEEEEEeeccee-----eeeec-cccccc-eeEEEecC--CCEEEE-EcCCCcEEEEEcCCCcccceeeeecC
Q 001311 864 AIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIP 933 (1102)
Q Consensus 864 asg~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~ 933 (1102)
+.+++||+|.=|.-.-+.. ...+. ...+.| ..+++... +.+|.. --..++|.|+|-.-.+. ...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~------~~~ 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP------PLP 177 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc------cCC
Confidence 6678999999998532221 11222 112333 34665533 455544 44678999998554221 111
Q ss_pred CCCCCC----CCCCcEEEEccCCcEEEE-E-------------eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC--
Q 001311 934 TGRTPT----AQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC-- 993 (1102)
Q Consensus 934 ~~~~~~----~~~v~~~~~spdg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp-- 993 (1102)
.....+ ......+.- -.+++.++ + .-|.|-+||.. |..++.+...+.-...+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 001000 000011111 12333332 2 22578899875 66666666556667778888866
Q ss_pred ----CCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 994 ----DSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 994 ----d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.|.+|+---.||+|-+||..+|+.+..+.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 46677766679999999999999888776
No 455
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.69 E-value=16 Score=42.46 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311 868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 947 (1102)
..+...++|. .|.++..+.........+...++|.+++..+ ..+..+|+.+. .... .....+.. .-=..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~~---~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGYY---DFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTEE----B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCccc---ccccccE
Confidence 3445555553 2444444432222222266778888887665 66888887653 2111 11221100 0115678
Q ss_pred EccCCcEEEEEe--------------CCeEEEEEcCCceEeeeeccCCCC-------------------------CCeeE
Q 001311 948 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH 988 (1102)
Q Consensus 948 ~spdg~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~ 988 (1102)
.-|+|++|+.+. +..|..+| .+|+.+..|....|- -.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999998754 23567777 888888776543331 24788
Q ss_pred EEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCC
Q 001311 989 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPS 1024 (1102)
Q Consensus 989 l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1024 (1102)
+.+.+ ++.+|+++-.-..|...|..++++.-.+...
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 99988 6666666655668999999999998877643
No 456
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=3.7 Score=50.06 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=66.0
Q ss_pred CeeEEEEecCCC--eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 808 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 808 ~i~~l~~s~d~~--~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
...++.|.|.-. .++.-.|+.|++..+.-.....+--......+|++|+| .|+.+++|..+|++.-|... .+....
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 345666766432 33333488888887653222211112456789999999 99999999999999988754 333333
Q ss_pred ecc----ccccceeEEEecCCCEEEEEc
Q 001311 886 LKG----HSKRITGLAFSHALNVLVSSG 909 (1102)
Q Consensus 886 l~~----h~~~V~~l~~s~d~~~l~s~s 909 (1102)
+.+ ...+|.+|+|-....+||+-+
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEec
Confidence 322 247899999988777777643
No 457
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=90.46 E-value=0.16 Score=31.67 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=15.4
Q ss_pred chhHHhHHHHHHHHhhhc
Q 001311 3 KSSKKLFTSKHFLLEQES 20 (1102)
Q Consensus 3 ~~~~~g~~~s~~~l~~Es 20 (1102)
=|.++||.+||++|.+||
T Consensus 10 YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 10 YLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHCT-HHHHHHHHHHT
T ss_pred HHHHCCcHHHHHHHHhcC
Confidence 478999999999999997
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=6.9 Score=42.75 Aligned_cols=143 Identities=7% Similarity=0.030 Sum_probs=89.3
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEeecce---eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccc
Q 001311 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~ 926 (1102)
-+.+-|. |.+....+...|.+.=|-++... .+..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 3455565 33334445556667777665321 122223356799999999999999999999999999985533211
Q ss_pred eeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311 927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
.....+......|...+|+.. .-+|...+..+.+|.+... +.++... .|.-.|.-..|.++-+.+..+
T Consensus 103 ----~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 103 ----EYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred ----HHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh--hcccCccEEEEccccceEeee
Confidence 111112222236888999887 5666667777777766432 2233322 567788888888887764433
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.22 E-value=20 Score=35.72 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=84.2
Q ss_pred cEEEEEeCCCcEEEEEeec--ceeeeeeccccccceeEEEecCCCEEEEEcCC---C---cEEEE---EcCCCcccceee
Q 001311 861 NIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S---QLCVW---SSDGWEKQKNRF 929 (1102)
Q Consensus 861 ~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g---~i~vw---d~~~~~~~~~~~ 929 (1102)
..|..+...+.|.+|++.. .+.+..|..- +.|..+.++..|++|+|-=.+ . .+|+| +....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence 3444446678899999983 4455666543 789999999999999986432 1 45654 22211111100
Q ss_pred eecCCCC------------------CCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceE-ee-----eec---cCCC
Q 001311 930 LQIPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES 982 (1102)
Q Consensus 930 ~~~~~~~------------------~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~-~~-----~~~---~~~h 982 (1102)
....|| .+....+.+++..|-.--|+++.++.+.+|.+..... .. .+. ...|
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000110 0112356788888876667788888999998765443 11 111 0011
Q ss_pred -CCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311 983 -SAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 983 -~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
.-.+..++|. +.|+|..+ |-.++|..+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 2335566664 56777665 566777654
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.19 E-value=18 Score=36.08 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=67.1
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC------cEEEE---E
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 876 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vw---d 876 (1102)
....++.+..+.++++++.+.|.+|++. ..+...+|..- +.|..++++. .|.+|++--++. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3445555554445455668889999987 44556666643 7799999999 899999864332 55665 2
Q ss_pred ee--cceee-eeeccc---------------------cccceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311 877 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922 (1102)
Q Consensus 877 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 922 (1102)
.. ..+.+ ..+-|| +..+.+++-.|-..-|+.|+ ++++.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22 11111 122232 23566777776544444454 456999988653
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=26 Score=36.35 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeeeeccccccc
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI 893 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V 893 (1102)
+++...+. +..++|+|+.+......+..-...=.+-.+.- .|++..++..|.-+.++|+.+ -.+..+.......-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceE
Q 001311 894 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 973 (1102)
Q Consensus 894 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~ 973 (1102)
..++.| |++-..+..|+-+.|-|+.. ..-..+.++......+..+..+++-.+++...++ +.+-|..+.+.
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ss 245 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSS 245 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCC
Q ss_pred eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
...+..-....++.--.|.=-+++...+..+.-+-+-|+++
T Consensus 246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ceEeeccccCCcccccceecccceeeeeccccCceeEeccC
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.00 E-value=14 Score=44.05 Aligned_cols=116 Identities=8% Similarity=0.075 Sum_probs=76.1
Q ss_pred CeEEEEEcc--CCCeEEEEECCCeEEEEEccC-------C----------ceeeeEEEeeccccCEEEEEEc--CCCCee
Q 001311 410 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL 468 (1102)
Q Consensus 410 ~V~~l~~sp--dg~~las~~~d~~v~vwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~d~~~~ 468 (1102)
.|+.|.... +...|+.|..||.|.+|.+++ . ..+++...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 577776655 778899999999999997631 0 0011222232 23478899987 5555
Q ss_pred EEEEecCCCcEEEEeCCCC--eeeEE-eecCCCCeEEEeeeecC---Ccc-EEEEEeCCCeEEEEEc
Q 001311 469 CVITCGDDKTIKVWDATNG--AKQYI-FEGHEAPVYSVCPHHKE---NIQ-FIFSTALDGKIKAWLY 528 (1102)
Q Consensus 469 ~l~s~~~d~~i~vWd~~~~--~~~~~-~~~h~~~v~~v~~~~~~---~~~-~l~s~s~dg~i~~wd~ 528 (1102)
+||.++....|.||-.... +.... -..|...|-+|+|.... +|. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765442 11111 11256678889886654 232 7888899999999887
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.89 E-value=7.3 Score=46.32 Aligned_cols=186 Identities=10% Similarity=0.126 Sum_probs=98.6
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
..+|+++. .+.|.||+...-.... ...++..+...|. .+...|+.+..|- . .| .
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p-------~~~p~~~~~t~p~------~~~~~D~~~s~~p--~--------PH--t 102 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLP-------SRKPCLRFDTKPE------FTSTPDRLISTWP--F--------PH--T 102 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCccccc-------ccccccccccCcc------ccccccccccCCC--C--------Cc--e
Confidence 66777765 6889999986522110 1112222222221 2223344444443 1 12 2
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCC-CeeeEEEEccCCceeeeccccCceeEEEEc--CCCC
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFD--TTKN 575 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~--~~~~ 575 (1102)
|+.+....-.+...|+.|.+||.|.+|.+++--... ...... .....+...|+ +.-.-....+.++++ ...+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~----f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF----FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC----eEeecCCceeEEEEEecCcce
Confidence 444433334555789999999999999764311000 000000 00000111121 111223367778887 7777
Q ss_pred EEEEEeCCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcCCC---C---EEEEEECCCcEEEEEc
Q 001311 576 RFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDG---C---LLAVSTNDNGIKILAT 635 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~iwd~ 635 (1102)
++|+++....|.||-..... .......+.+...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888888654421 11111112233468899997743 2 7888888999999887
No 464
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.23 E-value=43 Score=37.67 Aligned_cols=200 Identities=10% Similarity=-0.039 Sum_probs=103.3
Q ss_pred EecCCCeEEEEeCCeEEEEEcCCCceeeeecCCC--CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-
Q 001311 814 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS- 890 (1102)
Q Consensus 814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~- 890 (1102)
...|++.++...+|.|.-.|..++..+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3456666665558888888888877654332221 2233333333 565 6678889999999988888877765544
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEEEc
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFET 968 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d~~i~iwd~ 968 (1102)
-.+.+-..-.++ .+...+.|+.+...|..+++..-......... ..+..-....++..++... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLS-----LSIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccc-----cccccCceeecceEEEecCCCcceEEEEEc
Confidence 112222222233 22233356666666666554321111110000 0111111133444444433 456777777
Q ss_pred CCceEeeeecc---CCCCCCeeEEEEcCC-----CcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 969 TKLECVKQWVP---RESSAPITHATFSCD-----SQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 969 ~~~~~~~~~~~---~~h~~~v~~l~~spd-----~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.+|...-.... .+.. .+........ +.-+..++.++.+...|..+|+.+-++.
T Consensus 217 ~~G~~~w~~~~~~~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRT-AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred cCCcEeeeeeeecccCcc-cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 77777655321 0111 1100111111 1223566778888889999999988776
No 465
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.20 E-value=1.2 Score=31.24 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCeeEEEEecCCC--eEEEEEecCCeEEEEeCCCC
Q 001311 347 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGSR 379 (1102)
Q Consensus 347 ~~v~~v~~spdg~--~llasg~~d~~i~iWd~~~~ 379 (1102)
+.|.++.|||... -||+....-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998544 46888888899999999853
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.20 E-value=1.3 Score=30.50 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.7
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecC--CeEEEE
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 374 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iW 374 (1102)
.........+.+|||||++|+.+...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566778999999999988888887 776666
No 467
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.87 E-value=64 Score=42.09 Aligned_cols=390 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
|...++.|.-+|+|.++=+ .|+.++.||..+..-.. .-..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~Wk~-------------------~~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTARWKP-------------------PPDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccceecC-------------------CCCcccchhhhhcccCCCceEe
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-----e---eeEEeecC
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-----A---KQYIFEGH 496 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-----~---~~~~~~~h 496 (1102)
=+.|. |-|+..+.... ..-..|.+...+++|.- .++++-....+.+|++... . ..-.+.+-
T Consensus 419 -k~~~~---l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDDT---LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCCc---eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeE---EEEccCCceeeec---cccCceeEEEE
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT---MAYSADGTRTYQG---FRKRSLGVVQF 570 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~---~~~s~~~~~~~~~---~~~~~i~~~~~ 570 (1102)
.....+|.++.+. |+.+..+|.++.=++...+.. ........... +.-.-.+...+.| ..++.+..+.=
T Consensus 488 ~a~A~~VgLs~dr----LFvADseGkLYsa~l~~~~~~-~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlik 562 (1774)
T PF11725_consen 488 KAQAQSVGLSNDR----LFVADSEGKLYSADLPAAQDN-EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIK 562 (1774)
T ss_pred chhhhheeecCCe----EEEEeCCCCEEecccccccCC-CcceEeccccccccccccccccceeeccccCCCCeeeEEEe
Q ss_pred cCCCCEEEEEeCCCeEEE---EECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 571 DTTKNRFLAAGDDFSIKF---WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 571 ~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
+..|..-.+.-.+..-.+ |++..--.+..-.+-.....-..-..-.-++.=.++-.+|.|..||-.+.
T Consensus 563 d~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq--------- 633 (1774)
T PF11725_consen 563 DRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQ--------- 633 (1774)
T ss_pred ccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcch---------
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 727 (1102)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 727 (1102)
.|...+ ..+...|--|-..+...+
T Consensus 634 --------------~W~~~~-------------------------------~kd~~~L~RG~D~~AYVL----------- 657 (1774)
T PF11725_consen 634 --------------CWKDAG-------------------------------VKDIDQLKRGLDGNAYVL----------- 657 (1774)
T ss_pred --------------hhhhcc-------------------------------CcCHHHHhccccCCceEe-----------
Q ss_pred cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311 728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 807 (1102)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 807 (1102)
..+.|..+.+++....+.-+... ...+-...+...+...+.+.. ..
T Consensus 658 ----------k~G~vk~l~i~~~~~~~~~g~~~-----------------------~~a~~~~r~~~e~G~~l~Gl~-~~ 703 (1774)
T PF11725_consen 658 ----------KDGKVKRLSINQEHPSIAHGDNN-----------------------VFALPQRRNKVELGDALEGLE-DR 703 (1774)
T ss_pred ----------cCCceeeeecccCCCccccCCCc-----------------------ccccccccCCCCCCccccCCC-cC
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEE
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 873 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~ 873 (1102)
.|+++++-.+.+|++.-..|.+....-...-......+-.+.|..+++.. ..++.| -..+|.++
T Consensus 704 ~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~l~~~gl~G~ik~l~lD~-~~nL~A-lt~~G~Lf 767 (1774)
T PF11725_consen 704 VITAFAVVNDNKFVALDDQGDLTAHQKPGRPVPLSRPGLSGEIKDLALDE-KQNLYA-LTSTGELF 767 (1774)
T ss_pred cceeEEEEcCCceEEeccCCccccccCCCCCccCCCCCCCcchhheeecc-ccceeE-ecCCCcee
No 468
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.68 E-value=28 Score=39.15 Aligned_cols=203 Identities=13% Similarity=0.063 Sum_probs=105.2
Q ss_pred EEEEEeCCCcEEEEEeecceeeeeeccc--cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311 862 IIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 939 (1102)
Q Consensus 862 ~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 939 (1102)
.+.++..+|.|.-.|..+++.+.....- ...+.+-.+..+|+ +..++.++.+..+|..+++..-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~--- 142 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S--- 142 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C---
Confidence 3444577887777777777654322211 12233333333666 6677888888888887666533222211 0
Q ss_pred CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeC--CCeEEEEEcCCce
Q 001311 940 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFL--DATVCVFSAANLK 1016 (1102)
Q Consensus 940 ~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~--Dg~I~vwd~~~~~ 1016 (1102)
..+.....-.++..++...++.+...+..+|+..-...... -...+..--...++. ++.+.. ++.+.-.|..+|.
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCc
Confidence 01222233334444444456777777777777654432211 011111111122333 444444 6677778888888
Q ss_pred eEEEeCCCcccCCCCC--CCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCCC
Q 001311 1017 LRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~gh~--~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~ 1077 (1102)
..-............. ...+..-.+ .. +..+..++.++.+.-.+..+++..|+.+.+
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPV-YV---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceE-EE---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8766432111111100 000110011 11 233467788888999999999999999886
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=13 Score=40.71 Aligned_cols=159 Identities=10% Similarity=0.008 Sum_probs=86.8
Q ss_pred eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCce
Q 001311 894 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 972 (1102)
Q Consensus 894 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~ 972 (1102)
+.+-|...++.|+. ...|.+.=|.+++....-....... ..++|.++.||+|.+.||+ -.+..|.+++....+
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~-----d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMD-----DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeec-----CCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 44555443444443 3344566676665332111111111 2258999999999999999 489999999874433
Q ss_pred Eeee--eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCE
Q 001311 973 CVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1050 (1102)
Q Consensus 973 ~~~~--~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~ 1050 (1102)
.... ..+......|...+|+.. +-+|..+.. -+-+|-+...+.-.++- . .| +.+|. ..+|.++-.-.
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlV--k----s~-~~nvn--Wy~yc~et~v~ 168 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLV--K----SH-NLNVN--WYMYCPETAVI 168 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhh--h----hc-ccCcc--EEEEccccceE
Confidence 3222 222233556999999966 556666544 46667654433222211 0 11 22254 78888843222
Q ss_pred EEEEe-cCCcEEEEeccCCC
Q 001311 1051 FALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1051 l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
|.+.+ ..+++.=+-+.++.
T Consensus 169 LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 169 LLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred eeeccccccccccEEEeece
Confidence 33333 44555555565544
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.47 E-value=19 Score=32.75 Aligned_cols=118 Identities=9% Similarity=0.186 Sum_probs=68.9
Q ss_pred EEcCCCCeeEEEEecCCCcEEEEeCCCCe--------eeEEeecCCCCeEEEee---eecCCccEEEEEeCCCeEEEEEc
Q 001311 460 AFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVYSVCP---HHKENIQFIFSTALDGKIKAWLY 528 (1102)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~vWd~~~~~--------~~~~~~~h~~~v~~v~~---~~~~~~~~l~s~s~dg~i~~wd~ 528 (1102)
.|..... .|+.+..-+.|.|++..... .+..+. -...|++++- .+..+.+.|+.|+. ..|..||+
T Consensus 5 kfDG~~p--cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHP--CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EeCCCce--eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 4433333 57777778889999876432 344444 4566887753 33344567777765 77889999
Q ss_pred CCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 600 (1102)
Q Consensus 529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 600 (1102)
.....++.-..+ ..+.++.+..-+ ....-++..+.+..|.-||.+..+...+.
T Consensus 81 ~~N~d~Fyke~~-DGvn~i~~g~~~------------------~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVP-DGVNAIVIGKLG------------------DIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCc-cceeEEEEEecC------------------CCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 876655533332 345554442211 11123555666677888887655555443
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.44 E-value=2 Score=46.54 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=99.6
Q ss_pred CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCcee-eee-cCCCC----Cee-EEEEecCCCcEEEEEeCCCcEEEE-E
Q 001311 805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 876 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~d~~~lasg~~dg~v~vw-d 876 (1102)
....+..+-..|||+.+..-+..++.++++.+.... +.+ ....+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456678889999999999888888999988764432 111 11111 132 222233 67778889999998887 4
Q ss_pred eecce-----eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311 877 VRVDE-----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 951 (1102)
Q Consensus 877 ~~~~~-----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 951 (1102)
+..+. .++.++-...+|..+.--.+.+-+++-+..|++.++.-...+.. +..... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l----L~~~~~-----~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL----LFERAY-----QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce----ehhhhh-----cCcceeeeCcc
Confidence 44321 12222222233443333334567888888999988865443221 111111 25678999999
Q ss_pred CcEEEEEeCCeEEEEEcCCceE
Q 001311 952 QIHFLVVHETQLAIFETTKLEC 973 (1102)
Q Consensus 952 g~~l~~~~d~~i~iwd~~~~~~ 973 (1102)
+.++++-..|.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998876544
No 472
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=88.29 E-value=0.25 Score=32.85 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.5
Q ss_pred cchhHHhHHHHHHHHhhhcCCC
Q 001311 2 RKSSKKLFTSKHFLLEQESGFF 23 (1102)
Q Consensus 2 ~~~~~~g~~~s~~~l~~Esg~~ 23 (1102)
+-|.++||..|+++|++|+|+.
T Consensus 12 ~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 12 EYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHcCHHHHHHHHHHHhCCC
Confidence 4478899999999999999975
No 473
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.81 E-value=3.2 Score=42.31 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=52.5
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccC-------CCCCCeEEEEEccCCCeEE
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~la 424 (1102)
+.+..++.+ |.+-+.+|.+++||+.+++.+... .. . ..++. .....|..+.++.+|.-|+
T Consensus 16 ~~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~S----------i-~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 16 SFLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VS----------I-APLLNSSPVSDKSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred EEEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-cc----------H-HHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence 335667887 667788899999999998877631 11 0 11222 4667899999998888877
Q ss_pred EEECCCeEEEEEccCC
Q 001311 425 VAYSRHIVQIYSYHGG 440 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~ 440 (1102)
+-+ +|..+.|+.+-+
T Consensus 83 ~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 83 TLS-NGDSYSYSPDLG 97 (219)
T ss_pred EEe-CCCEEEeccccc
Confidence 665 477888887654
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.23 E-value=18 Score=40.50 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=63.9
Q ss_pred ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC---CEEEEEeCC
Q 001311 507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDD 583 (1102)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d 583 (1102)
.++.|..++-.+.+|.+.++-.+.-+....+......|.|-.++-+. +++.....-.+.-++|+|+. ..|+.-+.|
T Consensus 111 ~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd 189 (741)
T KOG4460|consen 111 LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD 189 (741)
T ss_pred ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCceEEEEecC
Confidence 35667788888888988776544334444444444445555554444 56665555567778999975 678888899
Q ss_pred CeEEEEECCCcceEEEEc
Q 001311 584 FSIKFWDMDSVQLLTSID 601 (1102)
Q Consensus 584 g~i~iwd~~~~~~~~~~~ 601 (1102)
+.||+||+.....+....
T Consensus 190 nviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 190 NVIRIYSLSEPTELYLQP 207 (741)
T ss_pred cEEEEEecCCcchhhccC
Confidence 999999998877665443
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.20 E-value=5.9 Score=43.10 Aligned_cols=171 Identities=11% Similarity=0.065 Sum_probs=94.0
Q ss_pred eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee-eee-cccc----ccce-eEEEecCCCEEEEEcCC
Q 001311 839 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHS----KRIT-GLAFSHALNVLVSSGAD 911 (1102)
Q Consensus 839 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l-~~h~----~~V~-~l~~s~d~~~l~s~s~D 911 (1102)
.+..+......+..+-..| |++.|..-+. .++.|+++.+.... +++ .... ..|+ ++..-..|.-|..++.|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3444555667788899999 8988877654 68899988764321 122 1111 1233 22223456778888999
Q ss_pred CcEEEE-EcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEE
Q 001311 912 SQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHA 989 (1102)
Q Consensus 912 g~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l 989 (1102)
|.|.-| |+..+.......+..+ .-.+.++..+.-..+.+-++. ..+|++.++.....+.+..-. --..+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeecc---ccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCccee
Confidence 998877 4443222111111111 111112222221122233333 356677766654443322211 13367788
Q ss_pred EEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311 990 TFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus 990 ~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
++||.+.+|++- +.|.|+++.+++....
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCC
Confidence 999999999865 4678999988776443
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.20 E-value=32 Score=37.83 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=93.7
Q ss_pred cccceEEEEEccCCceEEEeecCce------EEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311 738 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 811 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 811 (1102)
.-+.+..+.+.+++..+++.+.+|. +..+++..... ..........+.+-+.. |.... . ......+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 3466788999976667888888777 55444433111 00011001111111111 11110 0 1225667
Q ss_pred EEEecCCCeEEEEe-C------CeEEEEEcCCCceeeeec---------------CCCCCeeEEEEecCCCcEEEEEeCC
Q 001311 812 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMDD 869 (1102)
Q Consensus 812 l~~s~d~~~las~s-d------g~I~iwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~lasg~~d 869 (1102)
|++.++|.++++.. + ..|+.++.. ++....+. .......+++++| |++.|.++.+.
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888888776 6 678888876 55544431 1234588999999 88866555432
Q ss_pred -----C--c-------EEEEEe--ec-cee----eeeecc-----ccccceeEEEecCCCEEEEE-----cCCCcEEEEE
Q 001311 870 -----S--S-------IQIYNV--RV-DEV----KSKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS 918 (1102)
Q Consensus 870 -----g--~-------v~vwd~--~~-~~~----~~~l~~-----h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd 918 (1102)
+ . ++++.. .+ ++. ...+.. ....|+.+.+-+++++|+.= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 2 1 455544 33 222 222332 35678889999999877632 1233455554
Q ss_pred cC
Q 001311 919 SD 920 (1102)
Q Consensus 919 ~~ 920 (1102)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
No 477
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=87.01 E-value=97 Score=39.22 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=16.9
Q ss_pred cccceEEEEEccCCceEEEeecC
Q 001311 738 RATKISRLIFTNSGNAILALASN 760 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~d 760 (1102)
+-..+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 56678899999999866654433
No 478
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=8.6 Score=48.08 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=93.3
Q ss_pred eCCCcEEEEEeecceeeeeeccccccceeEEEe--------cCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCC
Q 001311 867 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR 936 (1102)
Q Consensus 867 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~ 936 (1102)
+-|..+.+|+..++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+..... ....+. -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 358889999999988788888888888877643 33344444444555777655432221110 111100 0
Q ss_pred CCCCCCCcEEEEccCCcEEEEEeCCeEE--EEEcCCc---e-Eee-------------e-ecc-CCCCCCeeEEEEcCCC
Q 001311 937 TPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL---E-CVK-------------Q-WVP-RESSAPITHATFSCDS 995 (1102)
Q Consensus 937 ~~~~~~v~~~~~spdg~~l~~~~d~~i~--iwd~~~~---~-~~~-------------~-~~~-~~h~~~v~~l~~spd~ 995 (1102)
......|.++....+|+.+.+|.||.|+ +|....+ + +-+ + +.. ..+..+|..+.+....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 0112467888888999999999888554 2222221 1 110 0 111 2567899999998888
Q ss_pred cEEEEEeCCCeEEEEEcCC
Q 001311 996 QLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 996 ~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
..|.+-++-|+|++||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999976
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=11 Score=47.97 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=41.6
Q ss_pred cEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311 944 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus 944 ~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
.+..+......+.....+.+-+|+.........+...++. .+.++..++++..||.+..||...+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 202 LQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 3333333444444444455555555444444444332222 288999999999999999999999866
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.21 E-value=3.5 Score=42.05 Aligned_cols=78 Identities=6% Similarity=0.084 Sum_probs=54.8
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCC----CCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001311 898 FSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR----TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 971 (1102)
Q Consensus 898 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~ 971 (1102)
+..++.+|++.+.+|.+++||+.+.+..... +..+.... ......|..+.++.+|.-+++-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4557889999999999999999987653322 11111110 02224788899999999988877888999988765
Q ss_pred eEee
Q 001311 972 ECVK 975 (1102)
Q Consensus 972 ~~~~ 975 (1102)
..+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5544
No 481
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.11 E-value=28 Score=36.93 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=67.8
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE------CCCeEEEEEccCCce
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE 442 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~v~vwd~~~~~~ 442 (1102)
..|++||..+.+-.. .-.+-.+.|+.|.|..+.++++.|. ....+..||+++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 468999988765543 2344567999999998888888774 355788999988653
Q ss_pred eeeEEEeec-----cccCEEEEEEcCCCCeeEEEEec-CCC--cEEEEeCCCCeeeEE-eecCCCCeEEEee
Q 001311 443 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI-FEGHEAPVYSVCP 505 (1102)
Q Consensus 443 ~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~-~d~--~i~vWd~~~~~~~~~-~~~h~~~v~~v~~ 505 (1102)
.. +.+ -.++|..+.+..++..-+.+.|. .++ .|..||=.+-..+.. ..+-...|..+.+
T Consensus 77 ~~----~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 77 SS----LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred ee----cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 22 333 24788888875433321344433 333 466676433333322 2222345555544
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.49 E-value=12 Score=46.74 Aligned_cols=171 Identities=13% Similarity=0.215 Sum_probs=98.2
Q ss_pred CCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311 333 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 412 (1102)
Q Consensus 333 ~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1102)
..+|..+...+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+.+++..... +.+-...|.
T Consensus 65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl 123 (1311)
T KOG1900|consen 65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTIL 123 (1311)
T ss_pred ccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence 3344555555555555555555555332233 5679999999998655442 444444555
Q ss_pred EEE--------EccCCCeEEEEECCCeEEEEEccCCceeee------EEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311 413 RVI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478 (1102)
Q Consensus 413 ~l~--------~spdg~~las~~~d~~v~vwd~~~~~~~~~------~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 478 (1102)
.+. |-|.=++|...+.--.|.|+-+.-.+.... ...+.-..-.|+|+....+|+ ++-+|.||
T Consensus 124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg- 199 (1311)
T KOG1900|consen 124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG- 199 (1311)
T ss_pred eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC-
Confidence 554 334445555555556676665432221111 111222245689999888887 44455566
Q ss_pred EEEEeCC----CC---e-ee----------------EEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC
Q 001311 479 IKVWDAT----NG---A-KQ----------------YIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 531 (1102)
Q Consensus 479 i~vWd~~----~~---~-~~----------------~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1102)
.+|.+. +| + |- -.+. .+..+|..+.+ +.....+++-+..|+|.+||+...
T Consensus 200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I--D~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI--DNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe--ccccceeeeeccCceEEEEEccCC
Confidence 445432 21 1 11 1122 46778888886 444578999999999999999763
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.30 E-value=7.4 Score=44.94 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=24.9
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 608 ASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
.++++.-+|.|..++.+..||.|++|+...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 356777889999999999999999998644
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.15 E-value=79 Score=35.63 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=82.7
Q ss_pred ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce
Q 001311 893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 972 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~ 972 (1102)
...+..++|+.+++.+..-..++-||-... ....+.... ...+..+.|.++|..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 344566778777776654433334443210 011122221 13678999999999998887777543 344443
Q ss_pred -----EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 973 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 973 -----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
.........-...+.++.|.+|+..+++| .+|.+.... +.|+.-.+....... ....+ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-----~~~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-----AANLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-----Cccee--EEEEcC--
Confidence 11221111112458999999888766655 688777654 555443332211111 12255 788876
Q ss_pred CCEEEEEecCCcEEEE
Q 001311 1048 PNEFALGLSDGGVHVF 1063 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW 1063 (1102)
.+.....+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 2455555678887655
No 485
>PRK13615 lipoprotein LpqB; Provisional
Probab=83.86 E-value=98 Score=36.49 Aligned_cols=153 Identities=9% Similarity=-0.027 Sum_probs=88.1
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-Cccccee
Q 001311 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR 928 (1102)
Q Consensus 850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~ 928 (1102)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-+...+...++..... ++... .
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-V 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-e
Confidence 37889999 88888888778888887655 22222222 2245666777776 555554433445444332 22211 1
Q ss_pred eeecCCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEc--CCc--eEe-ee-eccCCCCCCeeEEEEcCCCcEE
Q 001311 929 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFET--TKL--ECV-KQ-WVPRESSAPITHATFSCDSQLV 998 (1102)
Q Consensus 929 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----d~~i~iwd~--~~~--~~~-~~-~~~~~h~~~v~~l~~spd~~~l 998 (1102)
..... ....|..+..|+||..++.-. .++|.+--+ ..+ ..+ .. .........+.++.|..++++.
T Consensus 410 ~v~~~-----~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 410 AVSWT-----ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred ecccc-----CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 11111 124799999999999998842 256665433 223 122 11 1111124489999999999986
Q ss_pred EEEe---CCCeEEEEEcC
Q 001311 999 YACF---LDATVCVFSAA 1013 (1102)
Q Consensus 999 ~s~s---~Dg~I~vwd~~ 1013 (1102)
+.+. .+..+++..+.
T Consensus 485 Vl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 485 TLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEeccCCCCceEEEEECC
Confidence 6652 33456666655
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.36 E-value=5 Score=39.28 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=25.4
Q ss_pred CCeEEEEEccC------CCeEEEEECCCeEEEEEccC
Q 001311 409 VSVNRVIWSPD------GSLFGVAYSRHIVQIYSYHG 439 (1102)
Q Consensus 409 ~~V~~l~~spd------g~~las~~~d~~v~vwd~~~ 439 (1102)
..|.+++|||- +-+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 38999999994 34788889999999998664
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.00 E-value=37 Score=30.99 Aligned_cols=114 Identities=9% Similarity=0.041 Sum_probs=69.3
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCCCccc------ceeeeecCCCCCCCCCCCcEEEEcc-----CCcEEEEEeCCeEEE
Q 001311 897 AFSHALNVLVSSGADSQLCVWSSDGWEKQ------KNRFLQIPTGRTPTAQSDTRVQFHQ-----DQIHFLVVHETQLAI 965 (1102)
Q Consensus 897 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~sp-----dg~~l~~~~d~~i~i 965 (1102)
.|......|+.++.-++|.|.+....... ....+.+-+ .|++++-.+ +...|+.+....+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-------~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-------EITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-------ceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 34444567888888888888876543211 112233222 455554333 456777799999999
Q ss_pred EEcCCceEeeeeccCCCCCCeeEEEEc---CCCcEEEEEeCCCeEEEEEcCCceeEEE
Q 001311 966 FETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus 966 wd~~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
||+.....+.... -.+.|.++.+- ....-|+..+.+..|.-||.+..+..-+
T Consensus 78 YDV~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 78 YDVENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEcccCchhhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 9998766543322 24567777663 2223355555688888888777666543
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.95 E-value=82 Score=34.91 Aligned_cols=202 Identities=17% Similarity=0.286 Sum_probs=106.7
Q ss_pred cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE----cCCCCeeEEEEec-C-C--CcEEEEeCC--CC
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCG-D-D--KTIKVWDAT--NG 487 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~----s~d~~~~~l~s~~-~-d--~~i~vWd~~--~~ 487 (1102)
|...+++....++-+.+||++... +.. +. .+.++.+.. .-.|+..-|+.++ . + .+|++|.+. ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~---~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS---LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEE---E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEe---ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 456677778888899999998754 322 21 233333332 2245442243443 2 2 469999765 34
Q ss_pred eeeEEeec-------CCCCeEEEeeeecC-Cc-cEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceee
Q 001311 488 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 488 ~~~~~~~~-------h~~~v~~v~~~~~~-~~-~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
. +..+.. -...+..+|+..++ +| -+++....+|.+..|.+.... ..... ..|..+..
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~-------- 206 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV-------- 206 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence 3 333321 12347788875443 33 467778889999999875321 11100 01222221
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-----ceEEEEcCCCCCCCcCeEEEc--CCC-CEEEE-EECCC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-----QLLTSIDADGGLPASPRIRFN--KDG-CLLAV-STNDN 628 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~s--~~~-~~l~~-~~~dg 628 (1102)
...+-.+.++....+|+.+-++.-|.-|+.+.. +.+....+..-...+-.+++- .++ .||++ .-.++
T Consensus 207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 124555667777778999999988888887622 223233333333456667764 333 24444 44577
Q ss_pred cEEEEEccCCccce
Q 001311 629 GIKILATSDGIRLL 642 (1102)
Q Consensus 629 ~i~iwd~~~~~~~~ 642 (1102)
+..+|+.......+
T Consensus 283 sf~Vy~r~~~~~~~ 296 (381)
T PF02333_consen 283 SFAVYDREGPNAYV 296 (381)
T ss_dssp EEEEEESSTT--EE
T ss_pred eEEEEecCCCCccc
Confidence 89999987643333
No 489
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.21 E-value=1e+02 Score=35.46 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
...|.++.+...|. |-+|+.|| +..||..+++.+.. .......+|..+.-+-.|. +..|..+| |++.+.+.
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 35788888888884 45577777 66778777765542 1112236777777777777 66666554 66766544
No 490
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.99 E-value=81 Score=34.16 Aligned_cols=210 Identities=9% Similarity=-0.033 Sum_probs=101.3
Q ss_pred CCCCeeEEEEecCCCeEEEEeCCe--EEEEEcCCCcee---------------eeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311 805 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTM---------------ATFMPPPPAATFLAFHPQDNNIIAIGM 867 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~sdg~--I~iwd~~~~~~~---------------~~~~~~~~~i~~l~~sp~d~~~lasg~ 867 (1102)
+...|+++.+.+..+.|++-+|+. ++.+++...... ...-++.......+........++.+.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888766 999998533210 112234443444444431222333444
Q ss_pred CCCcEEEEEeecc----eeeeee---c-cccccceeEEEecC--CCEEEEEcCCCcEEEEEcCC--CcccceeeeecCCC
Q 001311 868 DDSSIQIYNVRVD----EVKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG 935 (1102)
Q Consensus 868 ~dg~v~vwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~ 935 (1102)
...+|.++..... ...+.+ . .-..++..+..+++ ...|..|+..+...++++.. ..............
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 4566776644321 111110 0 01123333333333 45666666542345555533 11101000000000
Q ss_pred CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 936 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 936 ~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
. .....++..-+++.+|.+ .|....+-|....+..+.... .-...+.++++. ..+|+.-. +..|.|+++.++
T Consensus 201 ~---~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 T---SLKPISVVQVPRDEFLLC-YDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred c---ccCceEEEEECCCeEEEE-ECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 0 001233333444554444 444444445443122111100 013456677776 35666554 556999999999
Q ss_pred eeEEEeC
Q 001311 1016 KLRCRIN 1022 (1102)
Q Consensus 1016 ~~~~~~~ 1022 (1102)
++++.+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9988776
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.86 E-value=32 Score=39.24 Aligned_cols=110 Identities=11% Similarity=0.081 Sum_probs=60.0
Q ss_pred ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC-CCCCCCcEEEEccCC------cEEEEE--e--
Q 001311 891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQDQ------IHFLVV--H-- 959 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~spdg------~~l~~~--~-- 959 (1102)
..-+.|+|.|||++|++--..|.|++++-.++.... ...+..-.. ........++|+|+- .+|.++ .
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~--~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV--VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee--eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 456889999999888876556999999865543211 111110000 013567899999885 234432 1
Q ss_pred -------CCeEEEEEcCCc-------eEe-eeecc-CCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311 960 -------ETQLAIFETTKL-------ECV-KQWVP-RESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus 960 -------d~~i~iwd~~~~-------~~~-~~~~~-~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
...|.-|.+... +.+ ..+.. ..| .-..|+|.|||.++++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H--~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH--NGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCc--CCceEEECCCCcEEEEECCC
Confidence 223444544321 111 11110 112 23467799999877766544
No 492
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.25 E-value=98 Score=38.33 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=113.4
Q ss_pred EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEE
Q 001311 745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 824 (1102)
Q Consensus 745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~ 824 (1102)
.++..-|+.+.+|+.+|.+.+|.+........... . ..... +...-+..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~---------~~~~~----~~~~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-V---------TETVK----FEKEFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-h---------cchhH----HhhhhccchhHHHhhcchhcchhee
Confidence 34455677899999999999998754322111000 0 00000 0001135667777777777778888
Q ss_pred eCCeEEEEEcCCCceeeeecCCCCCeeEEEEe--cCC-C--cEEEEEe-CCC-cEEEEEeecceeeeeeccccccceeEE
Q 001311 825 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQD-N--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA 897 (1102)
Q Consensus 825 sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s--p~d-~--~~lasg~-~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~ 897 (1102)
+|+.|.++++.+.+.... ..+-..+...++. +.. + .+.+... ... ....|+-+.+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 899999998876655211 1111111111110 001 1 1222222 111 122233222222211111122223333
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEee-e
Q 001311 898 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK-Q 976 (1102)
Q Consensus 898 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~-~ 976 (1102)
| .+..+.++-.+....+|.-.++......+...... ..--.+.--+++..++.+.|+...+-|.......+ .
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34444444443344444444432211111111100 11234455556666777777766666644322111 0
Q ss_pred eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311 977 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
+.. .....++.+ +.-|+++- .++.|.||+..++.+++++
T Consensus 238 l~w---s~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhcc
Confidence 000 112222222 44555554 4669999999999888777
No 493
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.98 E-value=48 Score=42.31 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=29.3
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL 382 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~ 382 (1102)
......++|+|... ++|.|+..|.|.++-...-+..
T Consensus 35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 35678899999998 6999999999999987654443
No 494
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.77 E-value=41 Score=38.66 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 985 PITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
.|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999899999999999999999974
No 495
>PRK13614 lipoprotein LpqB; Provisional
Probab=80.70 E-value=1.3e+02 Score=35.68 Aligned_cols=161 Identities=11% Similarity=0.125 Sum_probs=87.3
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-eeccccccceeEEEecCCCEEEEEcCCC--cEEEEEcCC-Ccc
Q 001311 849 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDG-WEK 924 (1102)
Q Consensus 849 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~-~~~ 924 (1102)
.+.+++.++ ++..+|....|+. .+|-...+.... .+.+ ..++.-.|.++| ++-+...+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888777662 333322233222 2333 246667787777 555554433 444443321 111
Q ss_pred cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCe--EEEEEc---CCceEeeee--ccCCCCCCeeEEEEcCCC
Q 001311 925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ--LAIFET---TKLECVKQW--VPRESSAPITHATFSCDS 995 (1102)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~--i~iwd~---~~~~~~~~~--~~~~h~~~v~~l~~spd~ 995 (1102)
.......... .......|..+..|+||..++.- .++. |.|--+ ..|.....- ..-++...+.++.|..++
T Consensus 419 ~~~~~~~v~~-~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 419 AQAPTVTLTA-DWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccceeecc-cccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 0000000000 01111259999999999999883 4665 665433 344322211 111234688999999999
Q ss_pred cEEEEEe---CCCeEEEEEcCCc
Q 001311 996 QLVYACF---LDATVCVFSAANL 1015 (1102)
Q Consensus 996 ~~l~s~s---~Dg~I~vwd~~~~ 1015 (1102)
.+++.+. .+-.+++..+..|
T Consensus 498 sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCCCcceEEEEEeCCC
Confidence 9877654 2344666666444
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.43 E-value=47 Score=38.73 Aligned_cols=128 Identities=9% Similarity=-0.009 Sum_probs=71.5
Q ss_pred EEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCC-CCeeEEEEcCCCcEEEEEe--------------CCCeEEEE
Q 001311 946 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACF--------------LDATVCVF 1010 (1102)
Q Consensus 946 ~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~spd~~~l~s~s--------------~Dg~I~vw 1010 (1102)
+.+-++|.+++... ..++.+|+. |+.+..+...+.. .-=..+..-|+|.+|+.+. .| .|..+
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEE
Confidence 56678888887654 788888885 5555555433211 1125677889999998887 23 36667
Q ss_pred EcCCceeEEEeCCCcccCCC-----------------CCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001311 1011 SAANLKLRCRINPSAYLPAG-----------------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus 1011 d~~~~~~~~~~~~~~~~~~g-----------------h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
| .+|+.+..+....++... ....+...=++.+.+.++.+++++-.-..|...|..+++-.|.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 899988887755544111 1111222338889887667777766667899999888887777
Q ss_pred cCCC
Q 001311 1074 VPPP 1077 (1102)
Q Consensus 1074 ~~~~ 1077 (1102)
+-.+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 7655
No 497
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=80.32 E-value=8.3 Score=45.02 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhccc
Q 001311 128 RSIMLVELKKLIEA 141 (1102)
Q Consensus 128 R~~l~~~l~~~i~~ 141 (1102)
|.+-...|++.|+.
T Consensus 421 rpqYykLIEecISq 434 (1102)
T KOG1924|consen 421 RPQYYKLIEECISQ 434 (1102)
T ss_pred hHHHHHHHHHHHHH
Confidence 44455555555544
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.22 E-value=49 Score=37.77 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
.-...+.|+|.|||+ +|++--..|.|++++-.++.......+ .......-.+....|+|+||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 446779999999998 466654469999998665532211000 000111136788999999874
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.92 E-value=43 Score=39.61 Aligned_cols=212 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCcEEEEE--------------------------------------------------
Q 001311 847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYN-------------------------------------------------- 876 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-------------------------------------------------- 876 (1102)
.+.|.+.+||. |.+.++....+..|.+++
T Consensus 112 ~nGIvaa~wS~-DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~ 190 (1243)
T COG5290 112 SNGIVAASWSA-DEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPY 190 (1243)
T ss_pred cCceEEEeecc-CCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcc
Q ss_pred -eecceeeeeeccccccceeEEEecCCCEEEEEcCC----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311 877 -VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 951 (1102)
Q Consensus 877 -~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 951 (1102)
+..|.+.....+..- ++|-.|..+.+.+... ..++||.-++ +......+..+.-..+.|-|.
T Consensus 191 ~vD~G~l~avd~~k~~----i~wrgD~~y~~v~r~Ee~prra~rvysreg---------~lds~sep~~g~e~~LSWkpq 257 (1243)
T COG5290 191 MVDYGDLFAVDTNKKI----IFWRGDTEYNLVGRSEERPRRAFRVYSREG---------QLDSASEPVTGMEHQLSWKPQ 257 (1243)
T ss_pred cccccceeEeeCCceE----EEEccCcceeeecchhcccccceeeecccc---------ccccccCCcccchhccccccC
Q ss_pred CcEEEE-EeCC-----eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc
Q 001311 952 QIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus 952 g~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
|..+++ +.|| .|..+..+..+.-.--...+-...+..++|.-....++.+ ....|.+|-..+..-..+..
T Consensus 258 gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e--- 333 (1243)
T COG5290 258 GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVE--- 333 (1243)
T ss_pred CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEe---
Q ss_pred ccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCCCCCCCCCC
Q 001311 1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTS 1084 (1102)
Q Consensus 1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1084 (1102)
....+ +. -+.|+|...+.|...+ .+.|..-++......-....|+++|...
T Consensus 334 ~~ip~-----~s--~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~~ 384 (1243)
T COG5290 334 RQIPG-----IS--YVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTSY 384 (1243)
T ss_pred ecCCC-----cc--eeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCceE
No 500
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.88 E-value=1e+02 Score=33.88 Aligned_cols=66 Identities=8% Similarity=-0.068 Sum_probs=36.8
Q ss_pred CCcEEEEEe------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe----EEEEEcCCcee
Q 001311 951 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT----VCVFSAANLKL 1017 (1102)
Q Consensus 951 dg~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~----I~vwd~~~~~~ 1017 (1102)
+++..+.+. ...+..||+.+.+....-.... .......+..-++++.+.|+.++. +.+||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 555555542 2368889988776543321111 112222333447788888876643 56788877654
Done!